genome.fa.s912.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold912
Parameters: 2 7 7 80 10 50 1000
Length:  117662

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7324--7375	13	3.5	13	73	26	50	34	19	13	32	1.90
10689--10740	19	2.6	21	90	6	81	42	13	15	28	1.85
10793--10852	13	5.0	13	74	25	69	31	13	16	38	1.87
10772--10852	34	2.4	34	100	0	162	32	12	17	38	1.87
13302--13471	75	2.2	75	84	6	207	26	24	15	33	1.95
13353--13585	103	2.2	106	88	4	339	24	27	17	30	1.97
13429--13498	28	2.5	28	93	2	115	22	28	22	25	1.99
18131--18160	14	2.1	14	100	0	60	30	0	0	70	0.88
18208--18271	31	2.1	31	88	5	94	54	15	0	29	1.41
19866--19907	20	2.3	19	80	12	52	47	2	2	47	1.28
24165--24197	16	2.1	16	94	0	57	45	6	15	33	1.70
25721--26148	218	1.9	219	81	4	511	45	10	12	32	1.75
27568--27643	3	25.0	3	97	2	143	65	0	1	32	1.01
29090--29878	414	1.9	415	89	0	1213	26	20	23	29	1.99
31759--31817	25	2.5	24	91	5	93	64	8	10	16	1.48
32678--32708	16	1.9	16	100	0	62	35	19	12	32	1.90
32721--32798	40	2.0	39	87	2	111	42	11	11	34	1.77
32724--32798	20	3.8	20	76	0	87	42	10	12	34	1.77
33351--33415	33	2.0	33	81	6	78	35	18	21	24	1.96
33407--34424	28	35.5	28	82	7	1081	22	18	31	27	1.97
33394--34423	145	7.2	143	86	5	1216	22	19	31	27	1.98
35581--35634	20	2.7	19	83	11	63	3	1	11	83	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35598--35634	9	4.0	9	93	6	65	0	0	13	86	0.57
35597--35633	10	3.8	10	85	7	58	0	0	10	89	0.49
35588--35630	19	2.3	19	84	8	52	2	2	11	83	0.83
48579--48637	25	2.5	23	94	5	100	64	8	11	15	1.49
49548--49622	20	3.8	19	78	7	87	41	12	13	33	1.81
49545--49622	40	2.0	39	89	2	120	41	12	12	33	1.82
52602--52718	31	3.5	31	70	22	101	43	13	15	27	1.84
52633--52687	20	2.8	20	88	0	83	40	14	12	32	1.84
52602--52755	71	2.2	71	90	0	236	43	13	14	27	1.84
52708--52766	20	3.0	20	76	0	73	44	11	11	32	1.78
53482--53890	28	14.1	32	81	8	155	24	17	29	27	1.97
53524--54060	28	18.8	28	82	4	590	23	18	29	28	1.98
53503--54060	115	4.9	115	82	6	632	23	17	29	28	1.97
53524--54060	143	3.8	143	83	6	658	23	18	29	28	1.98
55280--55338	22	2.6	22	84	10	66	1	3	11	83	0.85
55280--55329	14	3.4	14	79	15	57	2	2	12	84	0.80
55280--55348	8	8.8	8	72	13	54	2	4	10	82	0.91
59444--59978	79	6.8	79	83	5	570	32	13	26	27	1.94
59452--59975	158	3.3	156	84	4	680	31	13	27	27	1.94
59454--60002	237	2.3	234	81	4	667	32	13	26	27	1.94
59954--60130	51	3.5	50	77	6	178	36	11	23	28	1.89
62413--62486	20	3.7	19	87	7	103	41	13	16	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63632--63669	20	1.9	20	94	0	67	34	10	10	44	1.73
63661--63717	19	2.9	19	86	2	78	33	15	15	35	1.90
63762--63791	13	2.3	13	94	0	51	36	16	13	33	1.88
63747--63811	33	2.0	33	90	0	103	33	13	18	33	1.90
65502--65553	2	26.0	2	100	0	104	0	50	0	50	1.00
67555--67628	27	2.7	27	87	0	103	45	22	8	22	1.78
68981--69349	185	2.0	185	96	1	677	27	24	15	31	1.95
72284--72357	27	2.7	27	89	0	112	47	22	6	22	1.75
74435--74475	20	2.1	20	86	4	57	51	2	0	46	1.14
76456--76535	35	2.3	34	75	10	81	57	7	1	33	1.35
76997--77024	4	7.0	4	100	0	56	50	0	0	50	1.00
79820--79908	38	2.7	31	72	22	81	33	21	10	34	1.87
84299--84445	38	3.9	38	80	7	156	30	27	13	28	1.94
86140--86236	27	3.8	25	79	6	88	24	7	20	47	1.75
86196--86245	23	2.1	24	82	10	59	22	8	20	50	1.74
86196--86245	24	2.1	24	85	7	66	22	8	20	50	1.74
86292--86324	13	2.5	13	95	0	57	9	42	6	42	1.61
87110--87140	13	2.4	13	94	0	53	29	6	41	22	1.78
87206--87298	27	3.6	24	75	13	87	46	21	7	24	1.77
87223--87298	27	2.8	27	87	0	116	47	22	6	23	1.74
90177--90224	19	2.6	18	83	9	60	41	0	2	56	1.11
90234--90294	18	3.4	18	77	18	56	42	3	0	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90652--90698	14	3.4	14	72	21	53	38	0	4	57	1.18
90646--90699	28	1.9	28	100	0	108	37	0	5	57	1.22
90646--90698	16	3.6	16	73	19	60	35	0	5	58	1.22
91879--91980	41	2.4	43	76	17	104	53	0	0	45	1.06
91895--91980	41	2.1	42	82	10	106	53	1	0	45	1.07
92924--93092	11	16.3	11	68	21	80	38	1	0	60	1.05
92928--93091	20	9.2	17	67	23	65	39	1	0	59	1.05
92962--93038	27	2.9	27	77	11	72	42	1	0	55	1.07
93019--93092	29	2.6	27	77	12	76	35	1	0	63	1.03
92931--93094	33	5.2	33	72	18	106	39	1	0	59	1.05
93015--93094	12	7.0	12	67	24	57	35	1	0	63	1.02
93020--93103	39	2.2	39	80	8	100	38	1	0	60	1.04
93655--93725	27	2.6	27	86	8	101	47	22	4	25	1.69
98103--98132	13	2.3	13	94	0	51	50	6	36	6	1.55
98228--98302	27	2.8	26	78	6	78	46	16	4	33	1.65
100312--100350	19	2.0	20	85	10	53	51	2	0	46	1.14
100930--100970	18	2.3	18	87	4	57	46	0	2	51	1.14
103864--103929	31	2.1	31	88	0	96	42	19	21	16	1.89
104431--104459	14	2.1	14	100	0	58	31	20	34	13	1.92
105403--105450	13	3.6	13	81	15	62	79	4	0	16	0.89
107843--107914	32	2.3	32	87	2	110	37	9	19	33	1.85
108988--109014	6	4.5	6	100	0	54	0	14	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109732--109791	31	1.9	32	83	10	79	46	6	1	45	1.39
109790--109843	20	2.8	19	77	5	63	31	3	0	64	1.11
109803--109844	14	3.0	14	86	10	59	33	2	0	64	1.07
111581--111622	19	2.2	20	86	4	59	33	0	0	66	0.92
111960--111986	3	9.0	3	100	0	54	33	0	0	66	0.92
113302--113334	16	2.1	16	100	0	66	30	21	12	36	1.90
116516--116671	31	5.2	31	70	22	86	39	0	0	60	0.97
116615--116677	6	11.0	6	77	19	64	31	0	0	68	0.90
116577--116627	16	3.2	16	72	10	50	43	0	0	56	0.99
116615--116677	17	4.0	17	86	9	82	31	0	0	68	0.90
116627--116685	15	4.1	14	77	18	59	30	1	0	67	1.00

Tables:   1

The End!