genome.fa.s914.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold914
Parameters: 2 7 7 80 10 50 1000
Length:  63784

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7890--7950	22	2.7	22	78	16	72	44	0	1	54	1.10
8149--8191	14	2.7	18	70	30	51	51	0	0	48	1.00
10714--11069	158	2.3	157	79	10	379	32	19	12	36	1.88
13761--13799	19	2.0	20	85	5	53	23	15	25	35	1.94
14571--14844	77	3.5	78	79	10	265	33	11	24	29	1.90
14696--14941	131	1.9	133	84	5	340	35	10	24	30	1.88
17893--19651	467	3.8	462	78	7	1603	36	14	17	31	1.90
17796--20949	158	20.3	159	69	13	1168	37	14	17	30	1.90
18231--20944	159	17.5	152	69	13	619	37	14	17	30	1.90
20564--21362	398	2.0	400	81	3	950	36	13	18	30	1.90
21272--21652	151	2.5	151	82	2	417	36	15	16	31	1.90
22916--22994	24	3.3	23	79	10	70	12	11	6	69	1.35
22934--22994	24	2.5	24	89	0	86	14	11	4	68	1.35
32272--32523	79	3.2	78	83	5	319	30	15	28	25	1.96
32477--32551	28	2.7	27	83	4	78	24	18	33	24	1.97
32535--32657	52	2.4	52	83	5	151	30	12	25	31	1.92
34659--34684	13	2.0	13	100	0	52	38	15	15	30	1.88
34671--34712	21	2.0	21	95	0	75	28	21	9	40	1.84
35575--35812	55	4.3	55	87	5	329	23	21	26	28	1.99
35737--35912	94	1.9	95	93	1	309	22	19	31	26	1.98
35892--36271	61	6.3	61	85	5	499	30	18	25	25	1.98
36030--36117	28	3.2	28	62	20	67	28	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35834--36271	116	3.7	116	86	6	532	28	19	26	26	1.99
35837--36238	177	2.3	176	89	2	619	27	18	26	26	1.98
37239--37287	25	2.0	25	88	8	73	0	4	12	83	0.77
56298--56554	79	3.3	78	81	5	302	30	17	27	24	1.97
56569--56691	52	2.4	53	83	2	151	31	11	25	31	1.91
59063--59088	13	2.0	13	100	0	52	38	15	15	30	1.88
59075--59116	21	2.0	21	90	0	66	26	21	11	40	1.88
60596--60667	34	2.1	35	97	2	137	25	15	11	48	1.77
61024--61245	84	2.6	83	75	6	189	39	23	8	28	1.84

Tables:   1

The End!