Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold92
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2337674
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 499 characters in sequence are not A, C, G, or T
File 11 of 19
Found at i:1363659 original size:36 final size:33
Alignment explanation
Indices: 1363582--1363669 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 33
1363572 TAAATAGAAA
*
1363582 TAAATATT-ATTTTTAAA-TTTAAATTATATTT
1 TAAATATTAATTTTTAAATTTTAAAATATATTT
1363613 T--ATATTAATTTTTAAATTTTAAAATATATTAAT
1 TAAATATTAATTTTTAAATTTTAAAATATATT--T
1363646 TAAATATTTAA-TTTTAATATTTTA
1 TAAATA-TTAATTTTTAA-ATTTTA
1363670 TATTAATTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
29 5 0.10
30 9 0.19
31 13 0.27
33 2 0.04
35 9 0.19
36 10 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (33 bp):
TAAATATTAATTTTTAAATTTTAAAATATATTT
Found at i:1363891 original size:26 final size:25
Alignment explanation
Indices: 1363836--1363883 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
1363826 TATTTTTTTA
*
1363836 AAAATTATATAGATATATAATATTT
1 AAAATTATATAGATATATAATATAT
* *
1363861 TAAATTAT-TATATATATAATATA
1 AAAATTATATAGATATATAATATA
1363884 AATAAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
AAAATTATATAGATATATAATATAT
Found at i:1366620 original size:2 final size:2
Alignment explanation
Indices: 1366613--1366657 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
1366603 TCCATCCATC
*
1366613 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1366654 TA TA
1 TA TA
1366658 CTTCCAGTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1367591 original size:2 final size:2
Alignment explanation
Indices: 1367572--1367614 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
1367562 AGTTTTGCAG
1367572 TC TC T- TC TC T- TC -C TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1367611 TC TC
1 TC TC
1367615 AGGTTCTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 3 0.08
2 35 0.92
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:1369583 original size:320 final size:320
Alignment explanation
Indices: 1369001--1369644 Score: 1270
Period size: 320 Copynumber: 2.0 Consensus size: 320
1368991 TAAAGTTAGG
1369001 TTTTGTTTTGTTTTTGTTTTTTTTTTTGGGTTTTGAATTAAATTGACTCAATTTAAAACAGTATT
1 TTTTGTTTTGTTTTTGTTTTTTTTTTTGGGTTTTGAATTAAATTGACTCAATTTAAAACAGTATT
1369066 TTTAAATTAAAATAATATATTTTTATGTAAATTTAATTATAAAATATATAAATATTAAAAAAAAT
66 TTTAAATTAAAATAATATATTTTTATGTAAATTTAATTATAAAATATATAAATATTAAAAAAAAT
1369131 ATATTTTTAAAAATAATGAATAATAATTTAAATTTAAATAAATAAATTAAATATATTTAAAATTT
131 ATATTTTTAAAAATAATGAATAATAATTTAAATTTAAATAAATAAATTAAATATATTTAAAATTT
*
1369196 TTTTGATCACAGCTTTCTCATGTCTAGATATACATATGAGGTTGGTGATTTTATTCGAACCTACT
196 TTTTGATCACAACTTTCTCATGTCTAGATATACATATGAGGTTGGTGATTTTATTCGAACCTACT
*
1369261 GGTTCCGACTTCGCTCAACCTCATAGGGGTGGATTTGAACTCAACTCCGCAGGGGTGGAA
261 GGTTCCGACTTCGCTCAACCTCATAGGGGTGGATTTGAACACAACTCCGCAGGGGTGGAA
1369321 TTTTGTTTTGTTTTTGTTTTTTTTTTTGGGTTTTGAATTAAATTGACTCAATTTAAAACAGTATT
1 TTTTGTTTTGTTTTTGTTTTTTTTTTTGGGTTTTGAATTAAATTGACTCAATTTAAAACAGTATT
1369386 TTTAAATTAAAATAATATATTTTTATGTAAATTTAATTATAAAATATATAAATATTAAAAAAAAT
66 TTTAAATTAAAATAATATATTTTTATGTAAATTTAATTATAAAATATATAAATATTAAAAAAAAT
1369451 ATATTTTTAAAAATAATGAATAATAATTTAAATTTAAATAAATAAATTAAATATATTTAAAATTT
131 ATATTTTTAAAAATAATGAATAATAATTTAAATTTAAATAAATAAATTAAATATATTTAAAATTT
1369516 TTTTGATCACAACTTTCTCATGTCTAGATATACATATGAGGTTGGTGATTTTATTCGAACCTACT
196 TTTTGATCACAACTTTCTCATGTCTAGATATACATATGAGGTTGGTGATTTTATTCGAACCTACT
1369581 GGTTCCGACTTCGCTCAACCTCATAGGGGTGGATTTGAACACAACTCCGCAGGGGTGGAA
261 GGTTCCGACTTCGCTCAACCTCATAGGGGTGGATTTGAACACAACTCCGCAGGGGTGGAA
1369641 TTTT
1 TTTT
1369645 TTATTTTAAT
Statistics
Matches: 322, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
320 322 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (320 bp):
TTTTGTTTTGTTTTTGTTTTTTTTTTTGGGTTTTGAATTAAATTGACTCAATTTAAAACAGTATT
TTTAAATTAAAATAATATATTTTTATGTAAATTTAATTATAAAATATATAAATATTAAAAAAAAT
ATATTTTTAAAAATAATGAATAATAATTTAAATTTAAATAAATAAATTAAATATATTTAAAATTT
TTTTGATCACAACTTTCTCATGTCTAGATATACATATGAGGTTGGTGATTTTATTCGAACCTACT
GGTTCCGACTTCGCTCAACCTCATAGGGGTGGATTTGAACACAACTCCGCAGGGGTGGAA
Found at i:1369920 original size:18 final size:18
Alignment explanation
Indices: 1369875--1369925 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
1369865 TCTTTAATAC
1369875 ATATCAAAATTTATATAA
1 ATATCAAAATTTATATAA
1369893 A-AT--AAA-TTAT-TAA
1 ATATCAAAATTTATATAA
1369906 TATATCAAAATTTATATAA
1 -ATATCAAAATTTATATAA
1369925 A
1 A
1369926 ATATTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 12
0.69 0.00 0.31
Matches are distributed among these distances:
13 3 0.11
14 5 0.19
15 5 0.19
17 5 0.19
18 6 0.22
19 3 0.11
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATCAAAATTTATATAA
Found at i:1373954 original size:16 final size:16
Alignment explanation
Indices: 1373905--1373954 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
1373895 AATATTTTGT
1373905 AATTTATATAAATATA
1 AATTTATATAAATATA
* *
1373921 AA-TTAT-TAATGTTTTA
1 AATTTATATAA--ATATA
1373937 AATTTATATAAATATA
1 AATTTATATAAATATA
1373953 AA
1 AA
1373955 AGTATTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
14 3 0.12
15 4 0.15
16 12 0.46
17 4 0.15
18 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
AATTTATATAAATATA
Found at i:1374279 original size:30 final size:30
Alignment explanation
Indices: 1374226--1374286 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
1374216 TATAAAACTA
**
1374226 ATTTTTTATCAATTTAATTTAATTTTTAATC
1 ATTTTTTATCAATTTAAACTAA-TTTTAATC
*
1374257 ATTTTTTATTAA-TTAAACTAATTTTAATC
1 ATTTTTTATCAATTTAAACTAATTTTAATC
1374286 A
1 A
1374287 GTTTAACTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 9 0.33
30 7 0.26
31 11 0.41
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (30 bp):
ATTTTTTATCAATTTAAACTAATTTTAATC
Found at i:1374387 original size:14 final size:14
Alignment explanation
Indices: 1374368--1374398 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1374358 TTATGTTTAA
*
1374368 AATTTTTATATATT
1 AATTTTAATATATT
1374382 AATTTTAATATATT
1 AATTTTAATATATT
1374396 AAT
1 AAT
1374399 AATTCGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
AATTTTAATATATT
Found at i:1376546 original size:13 final size:14
Alignment explanation
Indices: 1376528--1376556 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
1376518 ATAAAATTTT
1376528 TTATATTA-ATAAA
1 TTATATTATATAAA
1376541 TTATATTATATAAA
1 TTATATTATATAAA
1376555 TT
1 TT
1376557 TTAAAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTATATTATATAAA
Found at i:1377843 original size:13 final size:14
Alignment explanation
Indices: 1377815--1377847 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
1377805 AAACAAATCT
*
1377815 AATTTTTTTATTTA
1 AATTTATTTATTTA
1377829 AATTTATTT-TTTA
1 AATTTATTTATTTA
1377842 AATTTA
1 AATTTA
1377848 ATATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
AATTTATTTATTTA
Found at i:1379427 original size:16 final size:16
Alignment explanation
Indices: 1379406--1379436 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1379396 CCATTTTATT
*
1379406 TTAATATTAATATATA
1 TTAATATCAATATATA
1379422 TTAATATCAATATAT
1 TTAATATCAATATAT
1379437 TTTTGATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAATATCAATATATA
Found at i:1379483 original size:19 final size:19
Alignment explanation
Indices: 1379444--1379500 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 19
1379434 TATTTTTGAT
1379444 ATATTATTTAAA-ATTTATTA
1 ATATTATTTAAATA-TT-TTA
1379464 ATATTATTTAAATATTTTA
1 ATATTATTTAAATATTTTA
*
1379483 AT-TTATATTTAATATTTT
1 ATATTAT-TTAAATATTTT
1379501 TTTAATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
18 4 0.12
19 15 0.44
20 14 0.41
21 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATATTATTTAAATATTTTA
Found at i:1379486 original size:27 final size:27
Alignment explanation
Indices: 1379455--1379520 Score: 69
Period size: 30 Copynumber: 2.3 Consensus size: 27
1379445 TATTATTTAA
1379455 AATTTATTAATATTATTTAAATATTTT
1 AATTTATTAATATTATTTAAATATTTT
* * *
1379482 AATTTATATTTAATATTTTTTTAATTTTTT
1 AA-TT-TA-TTAATATTATTTAAATATTTT
*
1379512 AATATATTA
1 AATTTATTA
1379521 TATAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
27 5 0.16
28 4 0.12
29 3 0.09
30 20 0.62
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
AATTTATTAATATTATTTAAATATTTT
Found at i:1379501 original size:20 final size:20
Alignment explanation
Indices: 1379433--1379501 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
1379423 TAATATCAAT
*
1379433 ATATTTTTGATATATTATTTA
1 ATATTTTTAATATA-TATTTA
*
1379454 AAATTTATTAATAT-TATTTA
1 ATATTT-TTAATATATATTTA
*
1379474 A-ATATTTTAATTTATATTTA
1 ATAT-TTTTAATATATATTTA
1379494 ATATTTTT
1 ATATTTTT
1379502 TTAATTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
19 8 0.20
20 20 0.49
21 7 0.17
22 6 0.15
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (20 bp):
ATATTTTTAATATATATTTA
Found at i:1379710 original size:16 final size:16
Alignment explanation
Indices: 1379668--1379710 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
1379658 AAAATAGCCT
*
1379668 GAACTCGAAATAACTT
1 GAACTCGAAATAACTC
*
1379684 AAAC-CGAAAATAACTC
1 GAACTCG-AAATAACTC
1379700 GAACTCGAAAT
1 GAACTCGAAAT
1379711 GATCTGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 2 0.09
16 18 0.82
17 2 0.09
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (16 bp):
GAACTCGAAATAACTC
Found at i:1380756 original size:15 final size:17
Alignment explanation
Indices: 1380733--1380788 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 17
1380723 TGTTATATGC
*
1380733 AATTGTAAAT-TTTAA-
1 AATTATAAATATTTAAT
1380748 AATTATAAATATTTAAT
1 AATTATAAATATTTAAT
*
1380765 AATTTTTTTAAATATTTAAT
1 AA---TTATAAATATTTAAT
1380785 AATT
1 AATT
1380789 TAACCTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
15 9 0.26
16 5 0.15
17 4 0.12
20 16 0.47
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
AATTATAAATATTTAAT
Found at i:1380925 original size:53 final size:54
Alignment explanation
Indices: 1380838--1380940 Score: 136
Period size: 53 Copynumber: 1.9 Consensus size: 54
1380828 CTAAACTTAA
* * **
1380838 AATGACTTGAACCCGATTTAACTTGAATGTTAAACCCAATTGACTCGAATTCAG
1 AATGACCTGAACCCGATTTAACTCGAACATTAAACCCAATTGACTCGAATTCAG
* **
1380892 AATGACCTGAACCTGA-TTAACTCGAACATTAAACCTGATTGACTCGAAT
1 AATGACCTGAACCCGATTTAACTCGAACATTAAACCCAATTGACTCGAAT
1380941 CCGAAATGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 28 0.67
54 14 0.33
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (54 bp):
AATGACCTGAACCCGATTTAACTCGAACATTAAACCCAATTGACTCGAATTCAG
Found at i:1381126 original size:379 final size:378
Alignment explanation
Indices: 1380427--1381157 Score: 1122
Period size: 379 Copynumber: 1.9 Consensus size: 378
1380417 AAATTTAACT
1380427 GTTAAACTTGATTGACTCAAACCTAAACCTAAAATGACTTGAACCCGATTTAACCTGAATATTAA
1 GTTAAACTTGATTGACTCAAACCTAAACCTAAAATGACTTGAACCCGATTTAACCTGAATATTAA
* * *
1380492 ACCCAATTGACTCGAATTCAGAATGACTTGAACTCGATTAACTCGAACATTAAACTTGATTGATT
66 ACCCAATTGACTCGAATTCAGAATGACCTGAACTCGATTAACTCGAACATTAAACCTGATTGACT
* * * * *
1380557 CGAATCTAAAATAATCAAAATTCAAAATAATCCGAACCTGAAATAACCTTAAGTCGAAATGATCC
131 CGAATCCAAAATAATCAAAACTCAAAATAATCCGAACCTGAAATAACCTTAACTAGAAATGACCC
* * * *
1380622 GTACCCAAAACGACCCGAACCTAAAAATAATTCAAAAATTTTAAAAATAAAAATAATTTAACTCG
196 GAACCCAAAACGACCAGAACCTAAAAATAATCCAAAAATTTTAAAAATAAAAATAATTCAACTCG
* * *
1380687 AATGACCCAACTTAAAACCAATCTGATACATCTAATTGTTATATGCAATTGTAAATTTTAAAATT
261 AATGACCCAACTTAAAACCAATCCGACACATCCAATTGTTATATGCAATTGTAAATTTTAAAATT
1380752 ATAAATATTTAATAATTTTTTTAAATATTTAATAATTTAACCTTAAACTCAACA
326 ATAAATATTTAATAA-TTTTTTAAATATTTAATAATTTAACCTTAAACTCAACA
* * *
1380806 GTTAAACTTGATTGACTCAAACCTAAACTTAAAATGACTTGAACCCGATTTAACTTGAATGTTAA
1 GTTAAACTTGATTGACTCAAACCTAAACCTAAAATGACTTGAACCCGATTTAACCTGAATATTAA
1380871 ACCCAATTGACTCGAATTCAGAATGACCTGAAC-CTGATTAACTCGAACATTAAACCTGATTGAC
66 ACCCAATTGACTCGAATTCAGAATGACCTGAACTC-GATTAACTCGAACATTAAACCTGATTGAC
* * ** *
1380935 TCGAATCCGAAATGATCAAAACTCAAAATAATTTGAACCTGAAATGACCTTAACTAGAAATGACC
130 TCGAATCCAAAATAATCAAAACTCAAAATAATCCGAACCTGAAATAACCTTAACTAGAAATGACC
* * * * * * * *
1381000 CGAACTCAAAATGATCATAACTTAAAAATGATCCAAAAATTTTAAAACTAGAAATAATTCAACTC
195 CGAACCCAAAACGACCAGAACCTAAAAATAATCCAAAAATTTTAAAAATAAAAATAATTCAACTC
* ** *
1381065 GAATGATCCAACTTAAAACCAATCCGACATGTCCAATTGTTATTTGCAATTGTAAATTTTAAAAT
260 GAATGACCCAACTTAAAACCAATCCGACACATCCAATTGTTATATGCAATTGTAAATTTTAAAAT
1381130 TATAAATATTTAATAATTTTTTAAATAT
325 TATAAATATTTAATAATTTTTTAAATAT
1381158 AAATTAAATA
Statistics
Matches: 316, Mismatches: 35, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
378 13 0.04
379 303 0.96
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (378 bp):
GTTAAACTTGATTGACTCAAACCTAAACCTAAAATGACTTGAACCCGATTTAACCTGAATATTAA
ACCCAATTGACTCGAATTCAGAATGACCTGAACTCGATTAACTCGAACATTAAACCTGATTGACT
CGAATCCAAAATAATCAAAACTCAAAATAATCCGAACCTGAAATAACCTTAACTAGAAATGACCC
GAACCCAAAACGACCAGAACCTAAAAATAATCCAAAAATTTTAAAAATAAAAATAATTCAACTCG
AATGACCCAACTTAAAACCAATCCGACACATCCAATTGTTATATGCAATTGTAAATTTTAAAATT
ATAAATATTTAATAATTTTTTAAATATTTAATAATTTAACCTTAAACTCAACA
Found at i:1381210 original size:49 final size:48
Alignment explanation
Indices: 1381124--1381217 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
1381114 TTGTAAATTT
* *
1381124 TAAAATTATAAATATTTAATAATTTTTTAAATATAAATTAAATAAATA
1 TAAAATTATAAAAATATAATAATTTTTTAAATATAAATTAAATAAATA
* *
1381172 TAAAATTTTAAAAATATAATTAATTATTATT-AAT-TAAATTTAATAA
1 TAAAATTATAAAAATATAA-TAATT-TT-TTAAATATAAATTAAATAA
1381218 TTTAATTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
48 16 0.41
49 16 0.41
50 5 0.13
51 2 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (48 bp):
TAAAATTATAAAAATATAATAATTTTTTAAATATAAATTAAATAAATA
Found at i:1381224 original size:13 final size:13
Alignment explanation
Indices: 1381187--1381230 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
1381177 TTTTAAAAAT
*
1381187 ATAATTAATTATTA
1 ATAATTAAAT-TTA
*
1381201 TTAATTAAATTTA
1 ATAATTAAATTTA
*
1381214 ATAATTTAATTTA
1 ATAATTAAATTTA
1381227 ATAA
1 ATAA
1381231 ATATATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 18 0.69
14 8 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATAATTAAATTTA
Found at i:1382121 original size:21 final size:21
Alignment explanation
Indices: 1382108--1382149 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1382098 AATGCTCGAG
1382108 CTCAACTCAAGAATACCGAAA
1 CTCAACTCAAGAATACCGAAA
1382129 CTCAACTCAAGAATAACCGAA
1 CTCAACTCAAGAAT-ACCGAA
1382150 TAAATTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.48, C:0.29, G:0.10, T:0.14
Consensus pattern (21 bp):
CTCAACTCAAGAATACCGAAA
Found at i:1383942 original size:19 final size:21
Alignment explanation
Indices: 1383915--1383955 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
1383905 AATAATAAAA
1383915 TTTTAAATTT-A-AATTTATT
1 TTTTAAATTTAATAATTTATT
*
1383934 TTTTTAATTTAATAATTTATT
1 TTTTAAATTTAATAATTTATT
1383955 T
1 T
1383956 ATATAATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 1 0.05
21 9 0.47
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTAAATTTAATAATTTATT
Found at i:1384362 original size:30 final size:30
Alignment explanation
Indices: 1384326--1384382 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
1384316 CCCACTAATC
1384326 GCCACTTACGTTACATAAATGATAGGCCGA
1 GCCACTTACGTTACATAAATGATAGGCCGA
1384356 GCCACTTACGTTACATAAATGATAGGC
1 GCCACTTACGTTACATAAATGATAGGC
1384383 GGCGTAGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (30 bp):
GCCACTTACGTTACATAAATGATAGGCCGA
Found at i:1386430 original size:5 final size:5
Alignment explanation
Indices: 1386405--1386470 Score: 62
Period size: 5 Copynumber: 13.0 Consensus size: 5
1386395 TTTATCAATG
** * * *
1386405 ATTTT AATTTT ATAGT ATTTT ATTTT ATTTT ATTTA ATTATT ATTAT A-ATT
1 ATTTT -ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT ATTTT
1386456 ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT
1386471 TATAGAATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
4 2 0.04
5 37 0.77
6 9 0.19
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (5 bp):
ATTTT
Found at i:1386744 original size:14 final size:14
Alignment explanation
Indices: 1386725--1386782 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
1386715 GTTCATATTA
*
1386725 TATTTTTTATAATT
1 TATTTTTAATAATT
*
1386739 TATTTTTAAAAATAT
1 TATTTTTAATAAT-T
1386754 ATATTTTT-A-AATT
1 -TATTTTTAATAATT
1386767 TATTTTTAATAATT
1 TATTTTTAATAATT
1386781 TA
1 TA
1386783 ATATTTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
12 7 0.18
13 2 0.05
14 20 0.53
15 2 0.05
16 7 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTTTAATAATT
Found at i:1386773 original size:29 final size:28
Alignment explanation
Indices: 1386723--1386809 Score: 99
Period size: 28 Copynumber: 3.1 Consensus size: 28
1386713 CAGTTCATAT
1386723 TATAT-TTTTTATAATTTATTTTTAAAAA
1 TATATATTTTTA-AATTTATTTTTAAAAA
*
1386751 TATATATTTTTAAATTTATTTTTAATAA
1 TATATATTTTTAAATTTATTTTTAAAAA
* * *
1386779 TTTAATATTTTT-AATTAAATTTT-AAAA
1 TAT-ATATTTTTAAATTTATTTTTAAAAA
1386806 TATA
1 TATA
1386810 AATATAAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 5 0.10
28 31 0.61
29 14 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (28 bp):
TATATATTTTTAAATTTATTTTTAAAAA
Found at i:1387675 original size:32 final size:34
Alignment explanation
Indices: 1387623--1387687 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
1387613 ATTTTTATGT
*
1387623 TATTATTATATTTATATAAATTTTAATATGTTTA
1 TATTATTATATTTATATAAATTTAAATATGTTTA
*
1387657 TATT-TTAT-TTTATGTAAATTTAAATATGTTT
1 TATTATTATATTTATATAAATTTAAATATGTTT
1387688 GTTTCGTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 21 0.72
33 4 0.14
34 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (34 bp):
TATTATTATATTTATATAAATTTAAATATGTTTA
Found at i:1388798 original size:2 final size:2
Alignment explanation
Indices: 1388793--1388836 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
1388783 ATATATTTTA
1388793 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1388835 AT
1 AT
1388837 GAAACGGCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1390193 original size:16 final size:16
Alignment explanation
Indices: 1390174--1390210 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
1390164 AGTTCGTATC
*
1390174 ATTTTGGGTTTTGGTT
1 ATTTTGGGTTTAGGTT
1390190 ATTTTGGGTTTAGGTT
1 ATTTTGGGTTTAGGTT
1390206 ATTTT
1 ATTTT
1390211 CAGGATCAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.27, T:0.62
Consensus pattern (16 bp):
ATTTTGGGTTTAGGTT
Found at i:1392900 original size:2 final size:2
Alignment explanation
Indices: 1392883--1392921 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
1392873 TAAAAATGCG
* *
1392883 TA TA AA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1392922 GTTTACATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1394734 original size:2 final size:2
Alignment explanation
Indices: 1394727--1394783 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
1394717 TTAGCCATTT
1394727 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
1394769 TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA T
1394784 GTGTGTGTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1394929 original size:12 final size:12
Alignment explanation
Indices: 1394893--1394946 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
1394883 TTGATATAGA
*
1394893 TAAATTTAATTTT
1 TAAATTT-ATATT
*
1394906 TAAAAATTATATT
1 T-AAATTTATATT
*
1394919 TATATTTATATT
1 TAAATTTATATT
*
1394931 TAAATATATATT
1 TAAATTTATATT
1394943 TAAA
1 TAAA
1394947 AATTATAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
12 23 0.68
13 6 0.18
14 5 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
TAAATTTATATT
Found at i:1394962 original size:15 final size:14
Alignment explanation
Indices: 1394944--1394991 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
1394934 ATATATATTT
1394944 AAAAATTATAAAATA
1 AAAAATT-TAAAATA
*
1394959 AAAATATTTAAAAAA
1 AAAA-ATTTAAAATA
*
1394974 TAAAAATTTAAGATA
1 -AAAAATTTAAAATA
1394989 AAA
1 AAA
1394992 TTTAAAACCG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 3 0.11
15 18 0.64
16 7 0.25
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (14 bp):
AAAAATTTAAAATA
Found at i:1397476 original size:22 final size:22
Alignment explanation
Indices: 1397427--1397485 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
1397417 TTGATTATGA
** *
1397427 ATAAAATTATTTTATAAAATTTT
1 ATAAAATTAAATTA-AAAATTAT
1397450 A-AAAATTAAATTAAAAATTAT
1 ATAAAATTAAATTAAAAATTAT
*
1397471 ATAAAATTTAATTAA
1 ATAAAATTAAATTAA
1397486 TTCCAACCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 8 0.26
22 22 0.71
23 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATAAAATTAAATTAAAAATTAT
Found at i:1400079 original size:21 final size:21
Alignment explanation
Indices: 1400055--1400098 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1400045 TCTGAGTGTA
*
1400055 ATTA-ATAATTATGTATATTTT
1 ATTATATAATAAT-TATATTTT
*
1400076 ATTATATTATAATTATATTTT
1 ATTATATAATAATTATATTTT
1400097 AT
1 AT
1400099 ATAAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTATATAATAATTATATTTT
Found at i:1400107 original size:32 final size:33
Alignment explanation
Indices: 1400095--1400160 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 33
1400085 TAATTATATT
1400095 TTATATAAATTTTAATATATTATTAATT-T-TTA
1 TTATATAAATTTTAATATATTA-TAATTATATTA
* *
1400127 TTATATAAATTTTAAAATA-TATATTTATATTA
1 TTATATAAATTTTAATATATTATAATTATATTA
1400159 TT
1 TT
1400161 TTATTTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.13
31 3 0.10
32 23 0.77
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (33 bp):
TTATATAAATTTTAATATATTATAATTATATTA
Found at i:1400113 original size:21 final size:21
Alignment explanation
Indices: 1400068--1400115 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
1400058 AATAATTATG
*
1400068 TATATTTTATTATATTATAAT
1 TATATTTTATTAAATTATAAT
*
1400089 TATATTTTATATAAATTTTAA-
1 TATATTTTAT-TAAATTATAAT
1400110 TATATT
1 TATATT
1400116 ATTAATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TATATTTTATTAAATTATAAT
Found at i:1400130 original size:13 final size:14
Alignment explanation
Indices: 1400071--1400159 Score: 52
Period size: 14 Copynumber: 5.7 Consensus size: 14
1400061 AATTATGTAT
1400071 ATTTTATTATATTATA
1 ATTTTATTATA-TA-A
*
1400087 ATTATATTTTATATAA
1 ATT-T-TATTATATAA
1400103 ATTTTAATATATTATTAA
1 ATTTT-AT-TA-TA-TAA
*
1400121 TTTTTATTATATAA
1 ATTTTATTATATAA
** *
1400135 ATTTTAAAATATAT
1 ATTTTATTATATAA
1400149 ATTTATATTAT
1 ATTT-TATTAT
1400160 TTTATTTATA
Statistics
Matches: 57, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
14 18 0.32
15 8 0.14
16 11 0.19
17 7 0.12
18 13 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTTATTATATAA
Found at i:1400514 original size:18 final size:20
Alignment explanation
Indices: 1400491--1400527 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
1400481 GATTAAAATT
1400491 TTTTAAT-TTAAA-AAATAA
1 TTTTAATGTTAAATAAATAA
1400509 TTTTAATGTTAAATAAATA
1 TTTTAATGTTAAATAAATA
1400528 TAAATATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
TTTTAATGTTAAATAAATAA
Found at i:1401387 original size:16 final size:16
Alignment explanation
Indices: 1401341--1401388 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
1401331 TATATATTTG
*
1401341 ATATTTATATTTTTAAT
1 ATATTTA-ATTTTTTAT
* *
1401358 TTTTTTAATTTTTTAT
1 ATATTTAATTTTTTAT
1401374 ATATTTAATTTTTTA
1 ATATTTAATTTTTTA
1401389 AAAAATTTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
ATATTTAATTTTTTAT
Found at i:1401397 original size:25 final size:25
Alignment explanation
Indices: 1401343--1401400 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
1401333 TATATTTGAT
* * **
1401343 ATTTATATTTTTAATTTTTTTAATT
1 ATTTATATATTTAATTTTTTAAAAA
*
1401368 TTTTATATATTTAATTTTTTAAAAA
1 ATTTATATATTTAATTTTTTAAAAA
1401393 ATTTATAT
1 ATTTATAT
1401401 TTATATTTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (25 bp):
ATTTATATATTTAATTTTTTAAAAA
Found at i:1401442 original size:15 final size:17
Alignment explanation
Indices: 1401408--1401442 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
1401398 TATTTATATT
1401408 TAAATATATTTTAAATA
1 TAAATATATTTTAAATA
1401425 TAAATAT-TTTTAAA-A
1 TAAATATATTTTAAATA
1401440 TAA
1 TAA
1401443 TAAAAATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 7 0.39
17 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAATATATTTTAAATA
Found at i:1402560 original size:18 final size:18
Alignment explanation
Indices: 1402527--1402575 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
1402517 CTCTTTCAAA
*
1402527 TTATATTAAAAATTAATT
1 TTATATTAAAAATTAAAT
* *
1402545 TTATATTAATATTTAAAT
1 TTATATTAAAAATTAAAT
* *
1402563 TTAAAATAAAAAT
1 TTATATTAAAAAT
1402576 ATTTTTATTA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTATATTAAAAATTAAAT
Found at i:1403272 original size:11 final size:10
Alignment explanation
Indices: 1403219--1403289 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 10
1403209 TGATATGTTA
1403219 ATTAT-TTTT
1 ATTATATTTT
1403228 ATTATAAATTTT
1 ATTAT--ATTTT
**
1403240 AAAATA-TTT
1 ATTATATTTT
1403249 ATT-TATTTGT
1 ATTATATTT-T
1403259 ATTATATTTAT
1 ATTATATTT-T
1403270 ATTAT-TTTT
1 ATTATATTTT
*
1403279 ATTATGTTTT
1 ATTATATTTT
1403289 A
1 A
1403290 AATATTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
8 2 0.04
9 17 0.34
10 13 0.26
11 11 0.22
12 7 0.14
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
ATTATATTTT
Found at i:1403276 original size:20 final size:19
Alignment explanation
Indices: 1403243--1403283 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
1403233 AAATTTTAAA
1403243 ATATTTATTTATTTGTATT
1 ATATTTATTTATTTGTATT
*
1403262 ATATTTATATTATTTTTATT
1 ATATTTAT-TTATTTGTATT
1403282 AT
1 AT
1403284 GTTTTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
ATATTTATTTATTTGTATT
Found at i:1404155 original size:15 final size:15
Alignment explanation
Indices: 1404121--1404163 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
1404111 TTTTTTATTG
1404121 ATAATATTTAA-A-A
1 ATAATATTTAATATA
*
1404134 TTAATATTTAATATA
1 ATAATATTTAATATA
*
1404149 ATAATATTTATTATA
1 ATAATATTTAATATA
1404164 TTTATAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 10 0.40
14 1 0.04
15 14 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATAATATTTAATATA
Found at i:1404184 original size:15 final size:16
Alignment explanation
Indices: 1404166--1404202 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
1404156 TTATTATATT
1404166 TATAATTATAA-TAAA
1 TATAATTATAATTAAA
1404181 TATAA-TATAATTAAA
1 TATAATTATAATTAAA
*
1404196 AATAATT
1 TATAATT
1404203 TTATAACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 5 0.26
15 13 0.68
16 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATAATTATAATTAAA
Found at i:1404188 original size:24 final size:24
Alignment explanation
Indices: 1404131--1404188 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 24
1404121 ATAATATTTA
1404131 AAAT-TAATATTTAATATAATAAT
1 AAATATAATATTTAATATAATAAT
** * *
1404154 ATTTATTATATTT-ATAATTATAAT
1 AAATATAATATTTAAT-ATAATAAT
1404178 AAATATAATAT
1 AAATATAATAT
1404189 AATTAAAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AAATATAATATTTAATATAATAAT
Found at i:1405184 original size:186 final size:186
Alignment explanation
Indices: 1404844--1405197 Score: 491
Period size: 186 Copynumber: 1.9 Consensus size: 186
1404834 ATTGGATATC
* * * * * *
1404844 AAAATTTATTAAATATTTAAAATTTTTAATAACAATATATAAAATTAAATGAGAATCAAATAATA
1 AAAATTAATTAAATATTCAAAATTTTCAAAAACAATATATAAAATTAAATAAAAATCAAATAATA
* *
1404909 AACAAATATCAAATTCATATATCAAAATCTGTTATTCATATAAATAAAATAGATTCAAATATTCA
66 AAC-AATATCAAATTCATATATCAAAATCTATTATTCATATAAATAAAAGAGATTCAAATATTCA
*
1404974 ATATTATTAAATTACACAATGAATAATAAATCTAATATTTGAATCCTTAAAAAATTT
130 ATACTATTAAATTACACAATGAATAATAAATCTAATATTTGAATCCTTAAAAAATTT
* *
1405031 AAAATTAATTAAA-ATCTCAAAATTTTCAAAAATAATATATAAAATTAAATAAAAATCAAATATG
1 AAAATTAATTAAATAT-TCAAAATTTTCAAAAACAATATATAAAATTAAATAAAAATCAAATA-A
*
1405095 TAAAC-ATATTAAATTCATATATCAAAATCTATTATTCATATAAATAAAACGA-ATTCAAATATT
64 TAAACAATATCAAATTCATATATCAAAATCTATTATTCATATAAATAAAA-GAGATTCAAATATT
* ** *
1405158 CAATACTATTTAAA-TATATTATGAATAATAAATTTAATAT
128 CAATACTA-TTAAATTACACAATGAATAATAAATCTAATAT
1405198 CTAAATCTCT
Statistics
Matches: 147, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
186 84 0.57
187 58 0.39
188 5 0.03
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (186 bp):
AAAATTAATTAAATATTCAAAATTTTCAAAAACAATATATAAAATTAAATAAAAATCAAATAATA
AACAATATCAAATTCATATATCAAAATCTATTATTCATATAAATAAAAGAGATTCAAATATTCAA
TACTATTAAATTACACAATGAATAATAAATCTAATATTTGAATCCTTAAAAAATTT
Found at i:1405483 original size:11 final size:12
Alignment explanation
Indices: 1405467--1405525 Score: 59
Period size: 11 Copynumber: 4.9 Consensus size: 12
1405457 AAGAAAAAAA
*
1405467 TTAAATAT-TTT
1 TTAAATATATAT
1405478 TTAAATATATAT
1 TTAAATATATAT
1405490 TTAAATATATA-
1 TTAAATATATAT
* *
1405501 ATAAATATAATTTT
1 TTAAATAT-A-TAT
1405515 TTAAATATATA
1 TTAAATATATA
1405526 AAAATTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
11 15 0.38
12 15 0.38
13 2 0.05
14 7 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TTAAATATATAT
Found at i:1405540 original size:25 final size:26
Alignment explanation
Indices: 1405478--1405542 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 26
1405468 TAAATATTTT
1405478 TTAAATATATATTTAAATATATAATAAA
1 TTAAATAT-T-TTTAAATATATAATAAA
1405506 -TATAAT-TTTTTAAATATATAA-AAA
1 TTA-AATATTTTTAAATATATAATAAA
1405530 TTAAATATTTTTA
1 TTAAATATTTTTA
1405543 TATTAAATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
24 6 0.18
25 21 0.62
26 1 0.03
27 3 0.09
28 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TTAAATATTTTTAAATATATAATAAA
Found at i:1405545 original size:23 final size:23
Alignment explanation
Indices: 1405480--1405530 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
1405470 AATATTTTTT
* *
1405480 AAATAT-ATATTTAAATATATAA
1 AAATATAATTTTTTAATATATAA
1405502 TAAATATAATTTTTTAAATATATAA
1 -AAATATAATTTTTT-AATATATAA
1405527 AAAT
1 AAAT
1405531 TAAATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.25
24 9 0.38
25 9 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATATAATTTTTTAATATATAA
Found at i:1406473 original size:19 final size:20
Alignment explanation
Indices: 1406439--1406477 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
1406429 TAACTATAAC
1406439 TAATAATTAATAAAAATATAT
1 TAATAATT-ATAAAAATATAT
1406460 TAATAATT-TAAAAATATA
1 TAATAATTATAAAAATATA
1406478 ATTTTTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TAATAATTATAAAAATATAT
Found at i:1408675 original size:58 final size:58
Alignment explanation
Indices: 1408613--1408951 Score: 214
Period size: 58 Copynumber: 5.8 Consensus size: 58
1408603 GGAATAGTGC
* * * **
1408613 TAAAATGCATGAAATTGCATAATAGTTTTTAAAATATTG-AAAATGATTAAAATAGTTT
1 TAAAATGCATGAAATTACATAAAAATCCTTAAAATA-TGAAAAATGATTAAAATAGTTT
* **
1408671 TAAAATGTATGAAATTACATAAAAATCCTTAAAATATGAAAAATGATTAAAAT-G-AC
1 TAAAATGCATGAAATTACATAAAAATCCTTAAAATATGAAAAATGATTAAAATAGTTT
* ** * ** * *
1408727 CATAAATGCATGAAATTACATAAATGGT-CTT-ACATCATGGCAAATGACTAAAAT-GATGT
1 TA-AAATGCATGAAATTACATAAA-AATCCTTAAAAT-ATGAAAAATGATTAAAATAG-TTT
* * * * *
1408786 AAAAATGCATAAAATTACATAATAAA-CCTT-AAATCATAAAAAATGACTAAAAT-GATTC
1 TAAAATGCATGAAATTACATAA-AAATCCTTAAAAT-ATGAAAAATGATTAAAATAG-TTT
* * * * * **
1408844 TAAAATTCATGAAATTACATAATAATCCTTAAACA-ATGGAAAATTACTAAAATGACCTT
1 TAAAATGCATGAAATTACATAAAAATCCTTAAA-ATATGAAAAATGATTAAAAT-AGTTT
* * * *
1408903 TAAAATGCATGAAATTGCATAAATGATCC-TAAAATATGACAAATTATTA
1 TAAAATGCATGAAATTACATAAA-AATCCTTAAAATATGAAAAATGATTA
1408952 GAATGGCCTT
Statistics
Matches: 221, Mismatches: 45, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
56 4 0.02
57 44 0.20
58 128 0.58
59 40 0.18
60 5 0.02
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (58 bp):
TAAAATGCATGAAATTACATAAAAATCCTTAAAATATGAAAAATGATTAAAATAGTTT
Found at i:1408694 original size:30 final size:31
Alignment explanation
Indices: 1408613--1408694 Score: 75
Period size: 29 Copynumber: 2.8 Consensus size: 31
1408603 GGAATAGTGC
* *
1408613 TAAAATGCATGAAATTGCAT--AATAGTTTT
1 TAAAATGTATGAAATTACATAAAATAGTTTT
* * *
1408642 TAAAATAT-TGAAAATGA-TTAAAATAG-TTT
1 TAAAATGTATG-AAATTACATAAAATAGTTTT
1408671 TAAAATGTATGAAATTACATAAAA
1 TAAAATGTATGAAATTACATAAAA
1408695 ATCCTTAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
28 3 0.08
29 25 0.62
30 12 0.30
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (31 bp):
TAAAATGTATGAAATTACATAAAATAGTTTT
Found at i:1409022 original size:58 final size:55
Alignment explanation
Indices: 1408825--1409092 Score: 188
Period size: 58 Copynumber: 4.6 Consensus size: 55
1408815 TAAATCATAA
* * * *
1408825 AAAATGACTAAAATGA-TTCTAAAATTCATGAAATTACAT-AATAATCCTTAAACAATGG
1 AAAATTACTAAAATGACAT-TAAAATGCATGAAA-TGCATAAATAATCC-TAAA-AAT-G
* *
1408883 AAAATTACTAAAATGACCTTTAAAATGCATGAAATTGCATAAATGATCCTAAAATATG
1 AAAATTACTAAAATGA-CATTAAAATGCATGAAA-TGCATAAATAATCCTAAAA-ATG
* * * * * *
1408941 ACAAATTATTAGAATGGCCTTAAAATACATGAGAATGTATAAATAATCCTAAATAATG
1 A-AAATTACTAAAATGACATTAAAATGCATGA-AATGCATAAATAATCCTAAA-AATG
* *
1408999 AAAATTTACAAAAATGACATTAAAATGCATGAAATG-ACTTAATAA-CCTCAAAATCATGG
1 AAAA-TTACTAAAATGACATTAAAATGCATGAAATGCA-TAAATAATCCT-AAAA--AT-G
*
1409058 AAAATGT-CTAAAATG-CAATTAAAATGCATAAAATG
1 AAAAT-TACTAAAATGAC-ATTAAAATGCATGAAATG
1409093 ACAAAAAAAT
Statistics
Matches: 175, Mismatches: 20, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
56 5 0.03
57 17 0.10
58 99 0.57
59 45 0.26
60 9 0.05
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (55 bp):
AAAATTACTAAAATGACATTAAAATGCATGAAATGCATAAATAATCCTAAAAATG
Found at i:1409032 original size:175 final size:173
Alignment explanation
Indices: 1408670--1409091 Score: 392
Period size: 175 Copynumber: 2.4 Consensus size: 173
1408660 TAAAATAGTT
* * * * * *
1408670 TTAAAATGTATGAAATTACATAAAAATCCTTAAAATATGAAAAATGATTAAAATGACCAT-AAAT
1 TTAAAATGCATGAAATTACATAATAATCCTTAAAATATGGAAAATTACTAAAATGACCTTAAAAT
* * * * ** *
1408734 GCATGAAATTACATAAATGGTCTTACATCATGGCAAATGACTAAAATGATGTAAAAATGCATAAA
66 GCATGAAATTACATAAATGATCTAAAATCATGACAAATGACTAAAATGACCTAAAAATACATAAA
* * *
1408799 ATTACATAATAAACCTTAAATCATAAAAAATGACTAAAATGAT
131 ATTACATAATAAACCTTAAATAATAAAAAATGACAAAAATGAA
*
1408842 TCTAAAATTCATGAAATTACATAATAATCCTTAAACA-ATGGAAAATTACTAAAATGACCTTTAA
1 T-TAAAATGCATGAAATTACATAATAATCCTTAAA-ATATGGAAAATTACTAAAATGACC-TTAA
* * * * * *
1408906 AATGCATGAAATTGCATAAATGATCCTAAAAT-ATGACAAATTATTAGAATGGCCTTAAAATACA
63 AATGCATGAAATTACATAAATGAT-CTAAAATCATGACAAATGACTAAAATGACCTAAAAATACA
* * * * * *
1408970 TGAGAATGTATA-AATAATCC-TAAATAATGAAAATTTACAAAAATGACA
127 T-AAAAT-TACATAATAAACCTTAAATAATAAAAAATGACAAAAATGA-A
* * * *
1409018 TTAAAATGCATGAAATGACTTAATAA-CCTCAAAATCATGGAAAATGT-CTAAAATG-CAATTAA
1 TTAAAATGCATGAAATTACATAATAATCCTTAAAAT-ATGGAAAAT-TACTAAAATGAC-CTTAA
*
1409080 AATGCATAAAAT
63 AATGCATGAAAT
1409092 GACAAAAAAA
Statistics
Matches: 203, Mismatches: 35, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
172 1 0.00
173 50 0.25
174 24 0.12
175 107 0.53
176 18 0.09
177 3 0.01
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.28
Consensus pattern (173 bp):
TTAAAATGCATGAAATTACATAATAATCCTTAAAATATGGAAAATTACTAAAATGACCTTAAAAT
GCATGAAATTACATAAATGATCTAAAATCATGACAAATGACTAAAATGACCTAAAAATACATAAA
ATTACATAATAAACCTTAAATAATAAAAAATGACAAAAATGAA
Found at i:1411608 original size:19 final size:19
Alignment explanation
Indices: 1411581--1411625 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
1411571 TTTTTATCGG
*
1411581 TATTT-TTTATTTTAATTTA
1 TATTTATTTATATT-ATTTA
1411600 -ATTTATTTATATTATTTA
1 TATTTATTTATATTATTTA
1411618 TATTTATT
1 TATTTATT
1411626 ATTCATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTATTTATATTATTTA
Found at i:1411676 original size:52 final size:53
Alignment explanation
Indices: 1411599--1411702 Score: 126
Period size: 52 Copynumber: 2.0 Consensus size: 53
1411589 ATTTTAATTT
* * *
1411599 AATTTATTTATATTATTTATATTTATTATTCATAA-TTAA-TAAAAA-ATTTAAA
1 AATTTATTAATATTATATATATTTATAATT-A-AATTTAATTAAAAATATTTAAA
1411651 AATTATATTAATATT-TATATATTTATAATTAAATTTAATTAAAAATATTTAA
1 AATT-TATTAATATTATATATATTTATAATTAAATTTAATTAAAAATATTTAA
1411703 TTATTTACTA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
50 2 0.04
51 5 0.11
52 23 0.51
53 15 0.33
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (53 bp):
AATTTATTAATATTATATATATTTATAATTAAATTTAATTAAAAATATTTAAA
Found at i:1414832 original size:43 final size:44
Alignment explanation
Indices: 1414785--1414869 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 44
1414775 CAATTTATTA
*
1414785 ATTAAAATAA-TATTTTTTAAAT-TTAATTATAAAATATATAAAT
1 ATTAAAATAATTATTTTTCAAATATTAA-TATAAAATATATAAAT
* *
1414828 ATTAATATAATTTATTTTTCAAATATTGATATAAAATATATA
1 ATTAAAATAA-TTATTTTTCAAATATTAATATAAAATATATA
1414870 TATTTTTTGC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 9 0.25
45 24 0.67
46 3 0.08
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (44 bp):
ATTAAAATAATTATTTTTCAAATATTAATATAAAATATATAAAT
Found at i:1415021 original size:40 final size:38
Alignment explanation
Indices: 1414977--1415068 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 38
1414967 AAATGGCAAG
*
1414977 ATTATAATATATAATCATATA-ATTTTATATTAAAAATTAT
1 ATTATATTATATAAT-ATATATATTTT-TATTAAAAATT-T
* *
1415017 ATTAT-TTATTTGAATATATATATTTTTATTAAATATTT
1 ATTATATTATAT-AATATATATATTTTTATTAAAAATTT
1415055 ATTATATTA-ATAAT
1 ATTATATTATATAAT
1415069 TATTCAATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
37 3 0.07
38 7 0.16
39 22 0.49
40 13 0.29
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (38 bp):
ATTATATTATATAATATATATATTTTTATTAAAAATTT
Found at i:1415051 original size:19 final size:19
Alignment explanation
Indices: 1414993--1415052 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
1414983 ATATATAATC
*
1414993 ATATA-ATTTTATATTAAAA
1 ATATATATTTT-TATTAAAT
*
1415012 AT-TATATTATTTATTTGAAT
1 ATATATATT-TTTA-TTAAAT
1415032 ATATATATTTTTATTAAAT
1 ATATATATTTTTATTAAAT
1415051 AT
1 AT
1415053 TTATTATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
18 2 0.06
19 14 0.41
20 12 0.35
21 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATATATATTTTTATTAAAT
Found at i:1415516 original size:20 final size:20
Alignment explanation
Indices: 1415491--1415539 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
1415481 GTACTGAATT
1415491 AATTTATTTAACTATAATAA-
1 AATTTATTTAACTA-AATAAG
* * *
1415511 AATTTATGTATCTAATTAAG
1 AATTTATTTAACTAAATAAG
1415531 AATTTATTT
1 AATTTATTT
1415540 TCTTTAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (20 bp):
AATTTATTTAACTAAATAAG
Found at i:1416161 original size:21 final size:20
Alignment explanation
Indices: 1416135--1416174 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
1416125 ATAAAATATA
1416135 TAAATAT-AGATATATGAGATT
1 TAAATATGAG-TA-ATGAGATT
1416156 TAAATATGAGTAATGAGAT
1 TAAATATGAGTAATGAGAT
1416175 AAGATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 9 0.50
22 2 0.11
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.35
Consensus pattern (20 bp):
TAAATATGAGTAATGAGATT
Found at i:1416173 original size:20 final size:21
Alignment explanation
Indices: 1416135--1416174 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
1416125 ATAAAATATA
1416135 TAAATATAGATATATGAGATT
1 TAAATATAGATATATGAGATT
1416156 TAAATAT-GAGTA-ATGAGAT
1 TAAATATAGA-TATATGAGAT
1416175 AAGATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.35
Consensus pattern (21 bp):
TAAATATAGATATATGAGATT
Found at i:1417589 original size:35 final size:34
Alignment explanation
Indices: 1417526--1417592 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 34
1417516 AACAGTTTAA
*
1417526 TTTAATTTTAATAAATTATTGTTAATATATATGG
1 TTTAATTTTAATAAATTATTATTAATATATATGG
1417560 TTTAATTTGTTAA-AAATTA-TATTATATATATAT
1 TTTAA-TT-TTAATAAATTATTATTA-ATATATAT
1417593 AAAATTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 9 0.31
35 16 0.55
36 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (34 bp):
TTTAATTTTAATAAATTATTATTAATATATATGG
Found at i:1417774 original size:28 final size:30
Alignment explanation
Indices: 1417714--1417792 Score: 94
Period size: 28 Copynumber: 2.7 Consensus size: 30
1417704 AATACAAATG
*
1417714 AACTC-TAATTTTTATTTTATATTCAGAAA
1 AACTCTTAATTTTTAATTTATATTCAGAAA
*
1417743 AACTTTTAATTTTTAATTT-T-TTCA-AATA
1 AACTCTTAATTTTTAATTTATATTCAGAA-A
*
1417771 AACTCTTAATTTTTAATGTATA
1 AACTCTTAATTTTTAATTTATA
1417793 ATTAAACAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 2 0.05
28 22 0.52
29 6 0.14
30 12 0.29
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.52
Consensus pattern (30 bp):
AACTCTTAATTTTTAATTTATATTCAGAAA
Found at i:1417998 original size:16 final size:18
Alignment explanation
Indices: 1417972--1418014 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
1417962 TTTTATATTA
*
1417972 TAAAAATTTAAA-ATAAT
1 TAAAAATTTAAATAAAAT
1417989 TAAAAA-TTAAATAAAAT
1 TAAAAATTTAAATAAAAT
1418006 T-AAAATTTA
1 TAAAAATTTA
1418015 TTTTAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAAATTTAAATAAAAT
Found at i:1418037 original size:17 final size:19
Alignment explanation
Indices: 1418003--1418038 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
1417993 AATTAAATAA
1418003 AATTAAAATTTATTTTAAT
1 AATTAAAATTTATTTTAAT
1418022 AATT-AAATTT-TTTTAAT
1 AATTAAAATTTATTTTAAT
1418039 TTATGAAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 6 0.35
19 4 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
AATTAAAATTTATTTTAAT
Found at i:1420128 original size:3 final size:3
Alignment explanation
Indices: 1420120--1420160 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
1420110 GAGTCACTTA
1420120 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1420161 TTATTCCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:1426180 original size:20 final size:19
Alignment explanation
Indices: 1426138--1426180 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
1426128 TATTTAATAC
*
1426138 TTAATATTAAAATTATTAT
1 TTAATATTAAAATTATTAA
* *
1426157 TTAATATTTAAATTTTTTAA
1 TTAATA-TTAAAATTATTAA
1426177 TTAA
1 TTAA
1426181 ACAATTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTAATATTAAAATTATTAA
Found at i:1427544 original size:26 final size:27
Alignment explanation
Indices: 1427493--1427546 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
1427483 TCACTTGAAA
*
1427493 TATATTAAATTTTTAAAAATTAAATTT
1 TATATTAAATATTTAAAAATTAAATTT
* *
1427520 TATATT-AATATTTAAATATTTAATTT
1 TATATTAAATATTTAAAAATTAAATTT
1427546 T
1 T
1427547 GTACAAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TATATTAAATATTTAAAAATTAAATTT
Found at i:1431620 original size:2 final size:2
Alignment explanation
Indices: 1431613--1431714 Score: 102
Period size: 2 Copynumber: 52.5 Consensus size: 2
1431603 CCTACATGAG
* * *
1431613 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TT TA AA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
1431654 TT TT TA TA TA TT TA -A AA AA T- TA TA TC TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1431694 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
1431715 TGAACATCAA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
1 3 0.03
2 84 0.97
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:1432752 original size:17 final size:16
Alignment explanation
Indices: 1432730--1432775 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
1432720 ACAATATATA
1432730 TAATTTTTATATTATTT
1 TAATTTTTATATT-TTT
1432747 TAATTTTTA-ATTTTT
1 TAATTTTTATATTTTT
* *
1432762 AAATATTTATATTT
1 TAATTTTTATATTT
1432776 AATATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 10 0.38
16 7 0.27
17 9 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TAATTTTTATATTTTT
Found at i:1433348 original size:32 final size:33
Alignment explanation
Indices: 1433311--1433376 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 33
1433301 TATAGAATAA
* *
1433311 ATTTAAATATAGTATTAATA-TT-ATTTTTATTT
1 ATTTAAATATAAT-TTAAAATTTAATTTTTATTT
*
1433343 ATTTAAATTTAATTTAAAATTTAATTTTTATTT
1 ATTTAAATATAATTTAAAATTTAATTTTTATTT
1433376 A
1 A
1433377 AATTTATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 5 0.17
32 13 0.45
33 11 0.38
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (33 bp):
ATTTAAATATAATTTAAAATTTAATTTTTATTT
Found at i:1433366 original size:18 final size:17
Alignment explanation
Indices: 1433343--1433382 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
1433333 ATTTTTATTT
1433343 ATTTAAATTTAATTTAAA
1 ATTTAAATTTAATTT-AA
* *
1433361 ATTTAATTTTTATTTAA
1 ATTTAAATTTAATTTAA
1433378 ATTTA
1 ATTTA
1433383 TTTAAGCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAAATTTAATTTAA
Found at i:1433400 original size:29 final size:27
Alignment explanation
Indices: 1433336--1433387 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
1433326 TAATATTATT
1433336 TTTA-TTTATTTAAATTTAATTTAAAA
1 TTTATTTTATTTAAATTTAATTTAAAA
1433362 TTTAATTTTTATTTAAATTT-ATTTAA
1 TTT-A-TTTTATTTAAATTTAATTTAA
1433388 GCATATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 3 0.13
27 1 0.04
28 6 0.26
29 13 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTATTTTATTTAAATTTAATTTAAAA
Found at i:1433541 original size:16 final size:17
Alignment explanation
Indices: 1433506--1433554 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
1433496 TATTTTTTAT
*
1433506 ATAATATAAAT-TACATA
1 ATAATATAAATATA-AAA
1433523 AT-ATATAAATATAAAA
1 ATAATATAAATATAAAA
1433539 ATAATATATAATATAA
1 ATAATATA-AATATAA
1433555 TTAAAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 12 0.43
17 9 0.32
18 7 0.25
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATATAAATATAAAA
Found at i:1435006 original size:21 final size:22
Alignment explanation
Indices: 1434982--1435022 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
1434972 TTTTATATTT
1434982 TATTATTAAAT-TTAAATAAAA
1 TATTATTAAATATTAAATAAAA
* *
1435003 TATTTTTAATTATTAAATAA
1 TATTATTAAATATTAAATAA
1435023 TAATTTGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TATTATTAAATATTAAATAAAA
Found at i:1435641 original size:27 final size:27
Alignment explanation
Indices: 1435582--1435643 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
1435572 TTTGCCACAT
1435582 GTACTTTGACATAAGTACTTAGCAAAG
1 GTACTTTGACATAAGTACTTAGCAAAG
*
1435609 GCACTTTGACAT-AGATACTTAGCATAA-
1 GTACTTTGACATAAG-TACTTAGCA-AAG
1435636 GTACTTTG
1 GTACTTTG
1435644 GTACAAGTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.06
27 27 0.87
28 2 0.06
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (27 bp):
GTACTTTGACATAAGTACTTAGCAAAG
Found at i:1435654 original size:27 final size:25
Alignment explanation
Indices: 1435584--1435655 Score: 65
Period size: 27 Copynumber: 2.6 Consensus size: 25
1435574 TGCCACATGT
1435584 ACTTTGACATAAGTACTTAGCAAAGGC
1 ACTTTGAC--AAGTACTTAGCAAAGGC
*
1435611 ACTTTGACATAGATACTTAGCATAA-GT
1 ACTTTGACA-AG-TACTTAGCA-AAGGC
1435638 ACTTTGGTACAAGTACTT
1 ACTTT-G-ACAAGTACTT
1435656 TTGGTAAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
25 1 0.03
26 2 0.05
27 28 0.72
28 5 0.13
29 3 0.08
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32
Consensus pattern (25 bp):
ACTTTGACAAGTACTTAGCAAAGGC
Found at i:1436100 original size:25 final size:25
Alignment explanation
Indices: 1436072--1436125 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
1436062 GAAAAGGCTA
1436072 TAAATAGTGATCTTAACGTTTCATT
1 TAAATAGTGATCTTAACGTTTCATT
1436097 TAAATAGTGATCTTAACGTTTCATT
1 TAAATAGTGATCTTAACGTTTCATT
1436122 TAAA
1 TAAA
1436126 ATCTTTTAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (25 bp):
TAAATAGTGATCTTAACGTTTCATT
Found at i:1437944 original size:67 final size:67
Alignment explanation
Indices: 1437816--1438095 Score: 208
Period size: 67 Copynumber: 4.2 Consensus size: 67
1437806 CCTATGCACC
* * *
1437816 ATACTATTAATAGAA-AAGTCAATCGTTGTGGTCTCCTACACCACTCCTGTCATTTTCTCATTTA
1 ATACTCTTAATA-AAGAAGTCAATCGTTGTGGTCTCCTACACCACTCCCGTCATCTTCTCATTTA
1437880 CAA
65 CAA
* * * *
1437883 ATACTCTTAATAAAGAAGTCGATCGTTGTGGTTTCCTACGCCATTCCCGTCACTCTT-TCATTTA
1 ATACTCTTAATAAAGAAGTCAATCGTTGTGGTCTCCTACACCACTCCCGTCA-TCTTCTCATTTA
1437947 CAA
65 CAA
* ** * * * * *** * * * *
1437950 AAACTCTTAATGGAGAAGTCAATCATTATGATCTCATACGTTACTTCTGTCATTCTCCTCATATA
1 ATACTCTTAATAAAGAAGTCAATCGTTGTGGTCTCCTACACCACTCCCGTCA-TCTTCTCATTTA
1438015 CAA
65 CAA
* * * * * ** *
1438018 ATTA-TTTTAATAGAGAAGTCGATCGTTGTGATCTCCTATACCACTCTTGTTA-CTCTCTCATTT
1 A-TACTCTTAATAAAGAAGTCAATCGTTGTGGTCTCCTACACCACTCCCGTCATCT-TCTCATTT
*
1438081 ATAA
64 ACAA
*
1438085 ATATTCTTAAT
1 ATACTCTTAAT
1438096 GGAAAAGTTG
Statistics
Matches: 165, Mismatches: 42, Indels: 12
0.75 0.19 0.05
Matches are distributed among these distances:
66 6 0.04
67 110 0.67
68 48 0.29
69 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (67 bp):
ATACTCTTAATAAAGAAGTCAATCGTTGTGGTCTCCTACACCACTCCCGTCATCTTCTCATTTAC
AA
Found at i:1438073 original size:135 final size:135
Alignment explanation
Indices: 1437856--1438246 Score: 338
Period size: 135 Copynumber: 2.9 Consensus size: 135
1437846 GTCTCCTACA
* * * * * *
1437856 CCACTCCTGTCATT-TTCTCATTTACAAA-TACTCTTAATAAAGAAGTCGATCGTTGTGGTTTCC
1 CCACTTCTGTCATTCTCCTCATATACAAATTA-TTTTAATAAAGAAGTCGATCGTTGTGATCTCC
* * * * * *
1437919 TACGCCATTCCCGTCACTCTTTCATTTACAAAAACTCTTAATGGAGAAGTCAATCATTATGATCT
65 TACACCACTCCCGTCACTCTCTCATTTACAAAAACTCTTAATGGAAAAGTCAACCATTATGATCC
1437984 CATACG
130 CATACG
** *
1437990 TTACTTCTGTCATTCTCCTCATATACAAATTATTTTAATAGAGAAGTCGATCGTTGTGATCTCCT
1 CCACTTCTGTCATTCTCCTCATATACAAATTATTTTAATAAAGAAGTCGATCGTTGTGATCTCCT
* ** * * * * ** *
1438055 ATACCACTCTTGTTACTCTCTCATTTATAAATATTCTTAATGGAAAAGTTGACCATTATGGTCCC
66 ACACCACTCCCGTCACTCTCTCATTTACAAAAACTCTTAATGGAAAAGTCAACCATTATGATCCC
*
1438120 ATGCG
131 ATACG
* * * * * * * *
1438125 CCACTTTTGTCACTCTCC-CTATATACAAATTCTTCTAATAAAAAAGTCAACCGTTGTGATCTCA
1 CCACTTCTGTCATTCTCCTC-ATATACAAATTATTTTAATAAAGAAGTCGATCGTTGTGATCTCC
* ** ** * * * ** *
1438189 TGCGTCACTCCTATCACTTTTTCATTTATAAGTACTTTTAATGGAAAAGTCAACCATT
65 TACACCACTCCCGTCACTCTCTCATTTACAAAAACTCTTAATGGAAAAGTCAACCATT
1438247 GTGGCCTCAT
Statistics
Matches: 203, Mismatches: 51, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
134 12 0.06
135 189 0.93
136 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (135 bp):
CCACTTCTGTCATTCTCCTCATATACAAATTATTTTAATAAAGAAGTCGATCGTTGTGATCTCCT
ACACCACTCCCGTCACTCTCTCATTTACAAAAACTCTTAATGGAAAAGTCAACCATTATGATCCC
ATACG
Found at i:1438206 original size:68 final size:68
Alignment explanation
Indices: 1438092--1438420 Score: 233
Period size: 68 Copynumber: 4.9 Consensus size: 68
1438082 TAAATATTCT
** * * * * * *
1438092 TAATGGAAAAGTTGACCATTATGGTCCCATGCGCCACTTTTGTCACTCTCCCTATATACAAATTC
1 TAATGGAAAAGTCAACCATTGTGGTCTCATGCGTCACTTCTATCACTCTCCCTATATACAAGTTC
1438157 TTC
66 TTC
** * * * * ** * * *
1438160 TAATAAAAAAGTCAACCGTTGTGATCTCATGCGTCACTCCTATCACTTTTTC-ATTTATAAGTAC
1 TAATGGAAAAGTCAACCATTGTGGTCTCATGCGTCACTTCTATCACTCTCCCTATATACAAGTTC
*
1438224 TTT
66 TTC
* ** * *
1438227 TAATGGAAAAGTCAACCATTGTGGCCTCATGCACCACTTCTATTACTCTCCCCATATACAAGTTC
1 TAATGGAAAAGTCAACCATTGTGGTCTCATGCGTCACTTCTATCACTCTCCCTATATACAAGTTC
1438292 TTC
66 TTC
* * * * *
1438295 AAATGGAGAAGTCGACCATTATGGTC-CTATGCGTCACTTCTATTACTCTCCCTA-ATACAAGTA
1 TAATGGAAAAGTCAACCATTGTGGTCTC-ATGCGTCACTTCTATCACTCTCCCTATATACAAGT-
*
1438358 T-TTT
64 TCTTC
* * * * * * * *
1438362 TAAAGGAGAAG---ACCGTTGTGATCTTATACGCCACTTCTGTCACTCTCCCTA-ATACAAGT
1 TAATGGAAAAGTCAACCATTGTGGTCTCATGCGTCACTTCTATCACTCTCCCTATATACAAGT
1438421 ATTTTTAATG
Statistics
Matches: 202, Mismatches: 55, Indels: 12
0.75 0.20 0.04
Matches are distributed among these distances:
64 39 0.19
67 70 0.35
68 93 0.46
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (68 bp):
TAATGGAAAAGTCAACCATTGTGGTCTCATGCGTCACTTCTATCACTCTCCCTATATACAAGTTC
TTC
Found at i:1438327 original size:135 final size:135
Alignment explanation
Indices: 1438075--1438337 Score: 307
Period size: 135 Copynumber: 1.9 Consensus size: 135
1438065 TGTTACTCTC
** * * *
1438075 TCATTTATAAATATTCTTAATGGAAAAGTTGACCATTATGGTCCCATGCGCCACTTTTGTCACTC
1 TCATTTATAAATATTCTTAATGGAAAAGTCAACCATTATGGTCCCATGCACCACTTCTATCACTC
* * * *
1438140 TCCCTATATACAAATTCTTCTAATAAAAAAGTCAACCGTTGTGATCTCATGCGTCACTCCTATCA
66 TCCCCATATACAAATTCTTCAAATAAAAAAGTCAACCATTATGATCTCATGCGTCACTCCTATCA
1438205 CTTTT
131 CTTTT
* * *
1438210 TCATTTATAAGTACTT-TTAATGGAAAAGTCAACCATTGTGG-CCTCATGCACCACTTCTATTAC
1 TCATTTATAAATA-TTCTTAATGGAAAAGTCAACCATTATGGTCC-CATGCACCACTTCTATCAC
* ** * * * *
1438273 TCTCCCCATATACAAGTTCTTCAAATGGAGAAGTCGACCATTATGGTC-CTATGCGTCACTTCTA
64 TCTCCCCATATACAAATTCTTCAAATAAAAAAGTCAACCATTATGATCTC-ATGCGTCACTCCTA
1438337 T
128 T
1438338 TACTCTCCCT
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
134 3 0.03
135 101 0.95
136 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (135 bp):
TCATTTATAAATATTCTTAATGGAAAAGTCAACCATTATGGTCCCATGCACCACTTCTATCACTC
TCCCCATATACAAATTCTTCAAATAAAAAAGTCAACCATTATGATCTCATGCGTCACTCCTATCA
CTTTT
Found at i:1439255 original size:2 final size:2
Alignment explanation
Indices: 1439250--1439276 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1439240 ATACACACAC
1439250 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1439277 CGCGCTATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1439475 original size:30 final size:29
Alignment explanation
Indices: 1439439--1439506 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
1439429 TGTTAAATTT
1439439 TAATTTTAATAATTAAAGATTAAATTTT-AA
1 TAATTTTAATAATTAAA-A-TAAATTTTAAA
*
1439469 TAATTTTTAATTATTAAAATAAATTTTAAA
1 TAA-TTTTAATAATTAAAATAAATTTTAAA
*
1439499 AAATTTTA
1 TAATTTTA
1439507 CGAGTAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 13 0.38
30 8 0.24
31 13 0.38
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (29 bp):
TAATTTTAATAATTAAAATAAATTTTAAA
Found at i:1441676 original size:30 final size:29
Alignment explanation
Indices: 1441586--1441710 Score: 132
Period size: 30 Copynumber: 4.3 Consensus size: 29
1441576 TTTTACTTAG
* *
1441586 ATAAATTTTATATTTTT-ATTACAATTAA
1 ATAAATTTTATATTTTTAATTATATTTAA
* *
1441614 ATAAGTTTT-TATTTTTAATT-TATGTCAA
1 ATAAATTTTATATTTTTAATTATAT-TTAA
*
1441642 ATAAATTTTACATTTTTAACTTATATTTAA
1 ATAAATTTTATATTTTTAA-TTATATTTAA
1441672 ATAAATTTT-TAATTTTTAATTTATATTTAA
1 ATAAATTTTAT-ATTTTTAA-TTATATTTAA
*
1441702 ATAATTTTT
1 ATAAATTTT
1441711 TAACATAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
27 8 0.10
28 22 0.27
29 8 0.10
30 40 0.49
31 3 0.04
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (29 bp):
ATAAATTTTATATTTTTAATTATATTTAA
Found at i:1441681 original size:58 final size:57
Alignment explanation
Indices: 1441586--1441695 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
1441576 TTTTACTTAG
* *
1441586 ATAAATTTTATATTTTTATTACAATTAAATAAGTTTTT-ATTTTTAATTTATGTCAA
1 ATAAATTTTACATTTTTATTACAATTAAATAAATTTTTAATTTTTAATTTATGTCAA
* *
1441642 ATAAATTTTACATTTTTAACTTATATTTAAATAAATTTTTAATTTTTAATTTAT
1 ATAAATTTTACATTTTT-A-TTACAATTAAATAAATTTTTAATTTTTAATTTAT
1441696 ATTTAAATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
56 16 0.34
57 1 0.02
58 17 0.36
59 13 0.28
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (57 bp):
ATAAATTTTACATTTTTATTACAATTAAATAAATTTTTAATTTTTAATTTATGTCAA
Found at i:1441712 original size:18 final size:18
Alignment explanation
Indices: 1441691--1441742 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
1441681 TAATTTTTAA
1441691 TTTATATTTAAATAATTT
1 TTTATATTTAAATAATTT
**
1441709 TTTA-ACATAAATCAATTT
1 TTTATATTTAAAT-AATTT
1441727 TTT-TATTTAAAATAAT
1 TTTATATTT-AAATAAT
1441743 CACTTATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
17 6 0.22
18 17 0.63
19 4 0.15
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATATTTAAATAATTT
Found at i:1442567 original size:24 final size:23
Alignment explanation
Indices: 1442516--1442564 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
1442506 AATTTTTATT
1442516 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAATTATAAAAATATA
*
1442538 TAAATATTAATATATTAAAATA-A
1 TAAATATTAAT-TATAAAAATATA
1442561 TAAA
1 TAAA
1442565 ATAGATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 10 0.42
24 9 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
TAAATATTAATTATAAAAATATA
Found at i:1446338 original size:11 final size:12
Alignment explanation
Indices: 1446324--1446352 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1446314 GTTAAAAAAA
1446324 ATTTTTTA-CTT
1 ATTTTTTATCTT
1446335 ATTTTTTATCTT
1 ATTTTTTATCTT
1446347 ATTTTT
1 ATTTTT
1446353 AAAAATCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (12 bp):
ATTTTTTATCTT
Found at i:1446908 original size:14 final size:16
Alignment explanation
Indices: 1446891--1446925 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
1446881 AAATTATTTA
1446891 ATTATA-ATTTAAT-T
1 ATTATATATTTAATAT
1446905 ATTATATATTTAATAT
1 ATTATATATTTAATAT
1446921 ATTAT
1 ATTAT
1446926 TTTTATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 7 0.37
16 6 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATATATTTAATAT
Found at i:1447489 original size:21 final size:21
Alignment explanation
Indices: 1447454--1447515 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
1447444 TGATTAATAA
*
1447454 AAATTTAAA-AAATTAT-ATT
1 AAATTTAAATAAATTATAAAT
*
1447473 AATATTTATATAAATTATAAAT
1 AA-ATTTAAATAAATTATAAAT
*
1447495 AAATTTAAATAAATAATAAAT
1 AAATTTAAATAAATTATAAAT
1447516 TTTAATTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 24 0.67
22 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATTTAAATAAATTATAAAT
Found at i:1447498 original size:11 final size:10
Alignment explanation
Indices: 1447454--1447556 Score: 54
Period size: 11 Copynumber: 10.0 Consensus size: 10
1447444 TGATTAATAA
1447454 AAATTTAAA-
1 AAATTTAAAT
*
1447463 AAA-TTATATT
1 AAATTTA-AAT
*
1447473 AATATTTATAT
1 AA-ATTTAAAT
1447484 AAATTATAAAT
1 AAATT-TAAAT
1447495 AAATTTAAAT
1 AAATTTAAAT
1447505 AAA--T-AAT
1 AAATTTAAAT
1447512 AAATTTTAATTATT
1 AAA-TTTAA--A-T
*
1447526 AAATATAAATT
1 AAATTTAAA-T
*
1447537 AAAATTAAAT
1 AAATTTAAAT
*
1447547 CAATTTAAAT
1 AAATTTAAAT
1447557 TAATAAAACA
Statistics
Matches: 73, Mismatches: 9, Indels: 23
0.70 0.09 0.22
Matches are distributed among these distances:
7 6 0.08
8 4 0.05
9 4 0.05
10 23 0.32
11 24 0.33
12 3 0.04
13 5 0.07
14 4 0.05
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (10 bp):
AAATTTAAAT
Found at i:1447542 original size:20 final size:21
Alignment explanation
Indices: 1447478--1447543 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
1447468 ATATTAATAT
* *
1447478 TTATATAAATTATAAA-TAAAT
1 TTAT-TAAATAATAAATTAAAA
* **
1447499 TTAAATAAATAATAAATTTTAA
1 TT-ATTAAATAATAAATTAAAA
1447521 TTATTAAAT-ATAAATTAAAA
1 TTATTAAATAATAAATTAAAA
1447541 TTA
1 TTA
1447544 AATCAATTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
20 12 0.34
21 18 0.51
22 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTATTAAATAATAAATTAAAA
Found at i:1449321 original size:14 final size:14
Alignment explanation
Indices: 1449274--1449323 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
1449264 ATTACGATTG
*
1449274 ATTATAAAAATATTA
1 ATTAT-AAAATAATA
*
1449289 ATTAAAAAATTAA-A
1 ATTATAAAA-TAATA
1449303 ATTATAAAATAATA
1 ATTATAAAATAATA
1449317 ATTATAA
1 ATTATAA
1449324 TATTTTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 3 0.10
14 21 0.70
15 6 0.20
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTATAAAATAATA
Found at i:1450665 original size:140 final size:140
Alignment explanation
Indices: 1450413--1450690 Score: 484
Period size: 140 Copynumber: 2.0 Consensus size: 140
1450403 TAACTTAGCC
* * *
1450413 TATGAAAATATCCGAGTTCTCCTGAATCAATAGACTTAATAATTTTAAACACGAAATAAAAATAT
1 TATGAAAATATCCGAATTCTCCTGAATCAATAAACTTAATAATTTTAAACACAAAATAAAAATAT
* *
1450478 GACACGGTCTATTATAATAAACATTAAATATGACAGCTTTCTATCATATTAAAATAAATGTAAGT
66 GACACGGTCTATTATAATAAACATTAAATATGACAACTTTCTATCATACTAAAATAAATGTAAGT
1450543 ACATATAGTA
131 ACATATAGTA
* *
1450553 TATGAGAATATCCGAATTCTCCTGAATCAATAAATTTAATAATTTTAAACACAAAATAAAAATAT
1 TATGAAAATATCCGAATTCTCCTGAATCAATAAACTTAATAATTTTAAACACAAAATAAAAATAT
*
1450618 GACACGGTTTATTATAATAAACATTAAATATGACAACTTTCTATCATACTAAAATAAATGTAAGT
66 GACACGGTCTATTATAATAAACATTAAATATGACAACTTTCTATCATACTAAAATAAATGTAAGT
1450683 ACATATAG
131 ACATATAG
1450691 ATTGATTTCT
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
140 130 1.00
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.32
Consensus pattern (140 bp):
TATGAAAATATCCGAATTCTCCTGAATCAATAAACTTAATAATTTTAAACACAAAATAAAAATAT
GACACGGTCTATTATAATAAACATTAAATATGACAACTTTCTATCATACTAAAATAAATGTAAGT
ACATATAGTA
Found at i:1456088 original size:24 final size:24
Alignment explanation
Indices: 1456043--1456088 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
1456033 TTGGTTACAT
**
1456043 TAAAATTAAAAATAATGGTGATAG
1 TAAAATTAAAAATAATAATGATAG
**
1456067 TAAAATTAATTATAATAATGAT
1 TAAAATTAAAAATAATAATGAT
1456089 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (24 bp):
TAAAATTAAAAATAATAATGATAG
Found at i:1459651 original size:22 final size:22
Alignment explanation
Indices: 1459623--1459674 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
1459613 TTAAATGGTA
1459623 TGTTAGGTAAACATATTAGGTG
1 TGTTAGGTAAACATATTAGGTG
1459645 TGTTAGGTAAACATATTAGGTG
1 TGTTAGGTAAACATATTAGGTG
*
1459667 TGCTAGGT
1 TGTTAGGT
1459675 GATGTGTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.37
Consensus pattern (22 bp):
TGTTAGGTAAACATATTAGGTG
Found at i:1459982 original size:2 final size:2
Alignment explanation
Indices: 1459975--1460005 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1459965 ATGCTCTACA
1459975 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1460006 ACTCTGACTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1461028 original size:14 final size:14
Alignment explanation
Indices: 1460994--1461021 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1460984 AAAAAATTAA
1460994 AATATTTTTATATT
1 AATATTTTTATATT
1461008 AATATTTTTATATT
1 AATATTTTTATATT
1461022 TAAATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
AATATTTTTATATT
Found at i:1461060 original size:27 final size:28
Alignment explanation
Indices: 1461008--1461061 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
1460998 TTTTTATATT
**
1461008 AATATTTTTATATTTAAATTTAAATAAA
1 AATATTTTTATATTTAAATAAAAATAAA
1461036 AATATTTTT-TA-TTAAATAAATAATAA
1 AATATTTTTATATTTAAATAAA-AATAA
1461062 TTTAATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.30
27 7 0.30
28 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
AATATTTTTATATTTAAATAAAAATAAA
Found at i:1461352 original size:16 final size:16
Alignment explanation
Indices: 1461333--1461365 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1461323 AAAAAATTAT
*
1461333 ATTTAAATTTAATTTA
1 ATTTAAATTAAATTTA
1461349 ATTTAAATTAAATTTA
1 ATTTAAATTAAATTTA
1461365 A
1 A
1461366 ATAAACTACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTAAATTAAATTTA
Found at i:1461366 original size:11 final size:11
Alignment explanation
Indices: 1461335--1461367 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
1461325 AAAATTATAT
1461335 TTAAATTT-AA
1 TTAAATTTAAA
*
1461345 TTTAATTTAAA
1 TTAAATTTAAA
1461356 TTAAATTTAAA
1 TTAAATTTAAA
1461367 T
1 T
1461368 AAACTACGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:1462722 original size:31 final size:31
Alignment explanation
Indices: 1462682--1462751 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
1462672 CTTAAGTGTT
* * * * *
1462682 AAATCTAATTTATCTGAACTCGAAATGATTC
1 AAATTTAATTAATCTAAAATCGAAATAATTC
* *
1462713 AAATTTAATTAATTTAAAATCGAAATAATTT
1 AAATTTAATTAATCTAAAATCGAAATAATTC
1462744 AAATTTAA
1 AAATTTAA
1462752 AATAATTTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.39
Consensus pattern (31 bp):
AAATTTAATTAATCTAAAATCGAAATAATTC
Found at i:1462741 original size:16 final size:16
Alignment explanation
Indices: 1462722--1462764 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
1462712 CAAATTTAAT
*
1462722 TAATTTAAAATCGAAA
1 TAATTTAAAATCAAAA
* *
1462738 TAATTTAAATTTAAAA
1 TAATTTAAAATCAAAA
1462754 TAATTTAAAAT
1 TAATTTAAAAT
1462765 TTTAAAACTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (16 bp):
TAATTTAAAATCAAAA
Found at i:1462763 original size:32 final size:31
Alignment explanation
Indices: 1462701--1462764 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
1462691 TTATCTGAAC
* *
1462701 TCGAAATGATTCAAATTTAATTAATTTAAAA
1 TCGAAATAATTCAAATTTAAATAATTTAAAA
*
1462732 TCGAAATAATTTAAATTTAAAATAATTTAAAA
1 TCGAAATAATTCAAATTT-AAATAATTTAAAA
1462764 T
1 T
1462765 TTTAAAACTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 16 0.55
32 13 0.45
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (31 bp):
TCGAAATAATTCAAATTTAAATAATTTAAAA
Found at i:1464651 original size:40 final size:40
Alignment explanation
Indices: 1464588--1464669 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 40
1464578 TTTGAATAAA
1464588 ATTTTTATAAATTTAAATTATAATTTAATA-ATTAAAAAT
1 ATTTTTATAAATTTAAATTATAATTTAATATATTAAAAAT
* *
1464627 ATTTTTATTTAAATTT-AATTATAATTTATTATTTTAAAAAT
1 ATTTTTA--TAAATTTAAATTATAATTTAATATATTAAAAAT
1464668 AT
1 AT
1464670 ATAAAATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
39 7 0.18
40 14 0.37
41 17 0.45
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (40 bp):
ATTTTTATAAATTTAAATTATAATTTAATATATTAAAAAT
Found at i:1466009 original size:3 final size:3
Alignment explanation
Indices: 1466003--1466076 Score: 148
Period size: 3 Copynumber: 24.7 Consensus size: 3
1465993 ATTAAATTAT
1466003 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1466051 TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TA
1466077 TTATTATTAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:1466081 original size:3 final size:3
Alignment explanation
Indices: 1466075--1466122 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
1466065 CTACTACTAC
1466075 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1466123 GTTTTGTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1466875 original size:19 final size:20
Alignment explanation
Indices: 1466834--1466877 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
1466824 CAGACAGTTT
*
1466834 AAAAATTAACTTAGAAAATA
1 AAAAATTAACTAAGAAAATA
1466854 AAAAATTAA-TAAGGAAAA-A
1 AAAAATTAACTAA-GAAAATA
1466873 AAAAA
1 AAAAA
1466878 GCAACAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (20 bp):
AAAAATTAACTAAGAAAATA
Found at i:1467759 original size:2 final size:2
Alignment explanation
Indices: 1467747--1467781 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
1467737 TGTCATCATA
* *
1467747 AT AT AT TT AT AT AT AC AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1467782 ATCAAGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1471169 original size:23 final size:23
Alignment explanation
Indices: 1471143--1471189 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
1471133 AATATTAATC
1471143 AATAAAT-ATTAATTTTTAAAATA
1 AATAAATCATT-ATTTTTAAAATA
* *
1471166 AATAAATCATTTTTTTTACAATA
1 AATAAATCATTATTTTTAAAATA
1471189 A
1 A
1471190 CTTGAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
AATAAATCATTATTTTTAAAATA
Found at i:1471560 original size:2 final size:2
Alignment explanation
Indices: 1471553--1471597 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
1471543 TTTCTTCTAT
1471553 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1471595 TA T
1 TA T
1471598 GTATTGAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1473473 original size:29 final size:30
Alignment explanation
Indices: 1473406--1473473 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
1473396 CATTCGGCAT
**
1473406 GATATAATTATATTACATAAATACAATAAAC
1 GATATAAAAATATTACATAAATACAAT-AAC
* *
1473437 GAT-T-AAAATATTATATAAATATAAT-AC
1 GATATAAAAATATTACATAAATACAATAAC
1473464 GATATAAAAA
1 GATATAAAAA
1473474 AATAATTGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
27 5 0.16
28 1 0.03
29 21 0.68
30 1 0.03
31 3 0.10
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.32
Consensus pattern (30 bp):
GATATAAAAATATTACATAAATACAATAAC
Found at i:1474314 original size:37 final size:36
Alignment explanation
Indices: 1474251--1474321 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 36
1474241 TATTTTAAAA
*
1474251 AATAAAAATATAATTAATTAATTAATTTTTTAATTTT
1 AATAAAAATATAATTAAATAATTAA-TTTTTAATTTT
1474288 AATAAAAATATTATATTAAAT-A-TAATTTTTAATT
1 AATAAAAATA-TA-ATTAAATAATTAATTTTTAATT
1474322 AATATTTATG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
36 9 0.29
37 13 0.42
38 3 0.10
39 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (36 bp):
AATAAAAATATAATTAAATAATTAATTTTTAATTTT
Found at i:1474656 original size:14 final size:14
Alignment explanation
Indices: 1474637--1474664 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1474627 TTAATTATAA
1474637 AATATAAAAATATT
1 AATATAAAAATATT
1474651 AATATAAAAATATT
1 AATATAAAAATATT
1474665 TTTAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATATAAAAATATT
Done.