genome.fa.s922.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold922
Parameters: 2 7 7 80 10 50 1000
Length:  92389

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2629--2848	57	3.9	56	75	8	171	38	18	15	27	1.91
2942--3004	31	2.0	31	84	0	81	19	20	14	46	1.84
2952--3028	31	2.5	31	85	2	93	19	15	15	49	1.80
3042--3136	30	3.1	30	81	4	120	23	16	8	51	1.71
3177--3351	61	2.9	61	73	5	160	21	18	13	46	1.83
3208--3351	30	4.8	30	72	6	94	19	18	13	47	1.82
3201--3427	91	2.5	91	77	11	227	21	20	13	44	1.86
3296--3452	30	5.2	30	73	9	99	19	21	14	45	1.85
3387--3469	30	2.8	30	83	1	96	20	20	13	45	1.84
6041--6380	69	5.0	69	72	3	258	26	12	23	37	1.90
7966--8018	21	2.5	21	87	0	88	45	9	3	41	1.54
9302--9368	33	2.0	33	88	0	98	34	11	13	40	1.81
9322--9346	13	1.9	13	100	0	50	36	16	16	32	1.90
9411--9435	13	1.9	13	100	0	50	32	16	16	36	1.90
9444--9564	52	2.3	52	94	0	215	34	18	19	28	1.95
16792--16824	8	4.2	8	92	3	50	90	3	6	0	0.52
16790--16831	15	2.9	15	82	13	52	85	7	7	0	0.73
16873--16900	10	2.8	10	100	0	56	92	7	0	0	0.37
17852--17933	30	2.7	31	88	1	112	25	28	18	28	1.98
17910--18228	61	5.0	61	82	12	338	21	34	13	30	1.92
17909--18125	34	7.0	27	78	15	128	21	36	13	28	1.92
17880--18229	95	3.6	96	80	12	344	21	33	13	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18036--18229	34	5.7	34	89	5	293	21	35	12	30	1.91
18036--18229	70	2.8	67	89	4	307	21	35	12	30	1.91
18276--18854	49	12.0	48	83	6	703	25	26	17	30	1.97
18276--18917	92	6.6	98	87	6	821	25	26	16	31	1.97
18516--18902	49	7.7	53	82	6	305	25	26	16	31	1.97
19687--19753	33	2.0	33	88	0	98	34	11	13	40	1.81
19707--19731	13	1.9	13	100	0	50	36	16	16	32	1.90
19797--19821	13	1.9	13	100	0	50	32	16	16	36	1.90
19830--19950	52	2.3	52	91	0	206	35	19	17	28	1.94
23467--23575	50	2.2	50	86	0	146	25	11	17	44	1.83
28217--28260	22	2.1	21	91	8	72	45	6	9	38	1.63
28944--29003	32	2.0	30	83	9	77	30	13	26	30	1.94
33042--33105	20	3.7	18	74	25	66	43	15	12	28	1.83
33060--33085	13	2.0	13	100	0	52	38	15	15	30	1.88
33042--33105	32	2.0	33	93	3	112	43	15	12	28	1.83
35311--35360	21	2.3	21	80	10	57	56	4	18	22	1.58
37150--37179	15	2.0	15	93	0	51	50	13	23	13	1.77
39261--39298	13	2.9	13	92	0	58	34	15	15	34	1.90
41656--41710	19	2.8	19	91	2	83	36	16	18	29	1.92
41762--41825	20	3.7	18	74	25	66	43	15	12	28	1.83
41780--41805	13	2.0	13	100	0	52	38	15	15	30	1.88
41762--41825	32	2.0	33	93	3	112	43	15	12	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42640--42695	20	2.8	20	89	5	87	41	10	12	35	1.78
42590--42744	71	2.2	71	87	3	215	45	10	14	29	1.78
45934--46081	24	6.1	24	85	5	190	31	5	3	60	1.36
45937--46083	72	2.0	72	88	5	215	32	5	3	58	1.37
47626--47742	20	5.7	20	78	6	119	31	15	14	38	1.88
47619--47742	43	3.0	43	80	5	146	31	16	14	37	1.88
53412--53437	13	2.0	13	100	0	52	38	15	15	30	1.88
53393--53458	34	2.0	34	90	3	107	42	16	13	27	1.86
58758--58787	1	30.0	1	93	0	51	0	0	3	96	0.21
65269--65298	15	2.0	15	100	0	60	86	13	0	0	0.57
66350--66923	27	21.0	27	89	2	880	22	34	14	28	1.94
66350--66923	109	5.3	108	92	1	880	22	34	14	28	1.94
66350--66923	164	3.5	162	90	2	889	22	34	14	28	1.94
66906--67794	32	27.8	32	96	0	1577	30	34	19	15	1.93
73463--73508	21	2.2	20	81	11	58	32	19	4	43	1.71
76170--76231	8	7.6	8	78	10	54	82	6	11	0	0.84
76169--76214	13	3.6	13	85	11	60	84	10	4	0	0.75
77197--77929	55	13.3	55	91	3	1092	29	30	20	20	1.97
77710--77857	29	5.3	29	59	18	71	28	31	18	21	1.97
78514--78544	16	1.9	16	100	0	62	70	0	6	22	1.09
78558--78614	21	2.7	21	97	0	105	33	10	19	36	1.86
78670--78737	19	3.9	19	78	21	85	35	11	14	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78691--78715	13	1.9	13	100	0	50	36	16	16	32	1.90
78672--78734	32	2.0	32	96	0	117	34	12	15	36	1.86
78777--78802	13	2.0	13	100	0	52	30	15	15	38	1.88
78757--78823	33	2.0	33	88	0	98	25	14	16	43	1.86
81276--81348	27	2.7	27	87	6	94	23	34	21	20	1.97
81331--81501	51	3.3	51	79	4	198	29	26	11	32	1.92
81484--81565	28	2.9	28	82	7	96	24	31	17	26	1.97

Tables:   1

The End!