genome.fa.s923.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold923
Parameters: 2 7 7 80 10 50 1000
Length:  96686

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
885--941	28	2.1	28	83	3	71	36	22	22	17	1.94
894--956	28	2.3	28	83	2	83	34	19	23	22	1.96
978--1201	80	2.8	82	81	4	260	33	14	22	29	1.94
918--1258	79	4.3	79	79	3	335	34	13	23	29	1.93
3583--3697	20	5.6	20	76	11	72	44	11	13	30	1.79
3584--3683	33	3.1	33	74	8	107	43	11	15	31	1.81
3634--3663	13	2.3	13	94	0	51	40	10	16	33	1.82
4381--4441	18	3.5	17	74	14	54	54	0	0	45	1.00
4575--4603	2	14.5	2	100	0	58	51	0	0	48	1.00
6046--6084	19	2.1	19	85	4	53	66	0	17	15	1.25
9896--10194	160	1.9	161	82	3	379	41	11	10	36	1.75
11986--12035	18	2.7	18	81	6	55	66	6	8	20	1.40
12541--12574	2	17.0	2	100	0	68	50	0	0	50	1.00
14668--14744	33	2.3	33	77	4	84	57	5	2	35	1.35
14731--14782	26	2.0	27	88	3	79	57	0	1	40	1.10
15809--15850	16	2.6	16	89	10	68	59	0	0	40	0.97
15938--15971	16	2.1	16	88	0	50	70	2	0	26	1.01
16384--16424	20	2.0	21	85	4	57	19	4	2	73	1.13
16645--16706	15	3.9	15	81	12	54	33	1	4	59	1.28
17884--17942	30	1.9	30	82	6	73	40	0	8	50	1.33
18346--18415	23	2.8	25	75	12	65	45	1	1	51	1.18
18367--18430	23	3.0	21	76	14	60	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18434--18503	34	2.1	34	97	0	131	37	5	4	52	1.45
18653--18718	16	4.3	15	81	11	62	42	0	1	56	1.08
18653--18718	31	2.1	31	83	5	80	42	0	1	56	1.08
18691--18770	22	3.7	22	81	5	83	45	2	1	51	1.22
18653--18742	15	5.4	15	79	18	81	41	1	2	55	1.19
19169--19225	28	2.0	28	100	0	114	22	14	14	49	1.79
19172--19232	28	2.2	28	94	2	106	21	11	14	52	1.73
20475--20508	2	17.0	2	100	0	68	50	0	0	50	1.00
22136--22224	30	3.0	30	93	0	151	14	24	22	38	1.92
22262--22291	3	10.0	3	100	0	60	33	0	0	66	0.92
27651--27697	2	23.5	2	100	0	94	48	0	0	51	1.00
29404--29433	1	30.0	1	93	0	51	0	3	0	96	0.21
30534--30563	15	2.0	15	93	0	51	43	0	0	56	0.99
31026--31057	16	2.0	16	100	0	64	31	12	6	50	1.65
35802--35826	13	1.9	13	100	0	50	32	16	16	36	1.90
36243--36286	23	1.9	23	81	9	54	29	4	22	43	1.73
41986--42034	21	2.3	21	82	6	55	34	18	2	44	1.61
43637--43715	32	2.5	32	97	2	151	13	12	13	59	1.62
44532--44580	19	2.5	20	90	3	73	28	16	16	38	1.90
44629--44666	13	2.9	13	96	0	67	31	15	18	34	1.92
46471--46708	97	2.5	97	86	2	334	30	12	28	28	1.93
52667--52935	142	1.9	138	82	4	333	42	10	12	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54260--54291	6	5.5	6	92	7	57	31	0	0	68	0.90
54379--54428	26	1.9	26	84	8	66	36	0	2	62	1.07
57734--57787	27	2.0	27	85	0	72	27	31	11	29	1.91
59119--59163	21	2.1	22	88	12	67	48	0	2	48	1.13
59385--59433	13	3.7	13	78	13	55	2	20	2	75	1.00
65448--65472	2	12.5	2	100	0	50	52	0	0	48	1.00
65591--65630	14	2.9	14	92	0	62	42	0	0	57	0.98
65604--65750	23	6.5	23	69	19	78	50	0	0	49	1.00
65604--65638	5	7.2	5	87	6	54	45	0	0	54	0.99
65585--65677	43	2.2	42	83	9	109	41	0	0	58	0.98
65604--65761	15	10.4	16	67	21	67	50	0	0	49	1.05
66470--66501	13	2.6	13	90	9	50	46	0	0	53	1.00
67211--67270	26	2.3	27	86	11	81	50	0	0	50	1.00
67223--67257	17	2.1	17	89	5	54	54	0	0	45	0.99
67234--67274	22	1.9	21	85	14	57	53	0	0	46	1.00
67286--67326	17	2.5	17	80	15	50	43	0	2	53	1.13
68047--68121	12	6.0	12	70	14	62	64	1	4	30	1.20
68158--68237	21	3.5	23	78	10	76	71	1	1	26	1.01
68199--68235	13	2.6	14	87	12	58	78	0	0	21	0.75
68158--68242	11	7.5	11	70	19	59	70	1	1	27	1.02
68158--68237	23	3.6	21	73	17	72	71	1	1	26	1.01
77537--77569	11	2.8	12	81	9	50	39	0	12	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77961--77993	11	2.9	11	95	4	57	27	0	0	72	0.85
82704--82759	19	2.8	20	89	2	87	30	17	14	37	1.90
90179--90234	26	2.3	26	84	9	73	53	1	1	42	1.21
91353--91406	16	3.2	17	79	15	67	50	5	1	42	1.36
91341--91404	30	2.0	34	85	11	91	53	3	1	42	1.26
92143--92202	26	2.3	25	80	8	66	46	0	3	50	1.18
94444--94494	20	2.7	19	82	11	61	49	0	0	50	1.00
94456--94495	20	2.0	20	90	9	64	45	0	0	55	0.99

Tables:   1

The End!