Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold924

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3104
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33


Found at i:3019 original size:42 final size:42

Alignment explanation


    Indices: 2964--3080  Score: 175
    Period size: 40  Copynumber: 2.8  Consensus size: 42

       2954 TTCTTCTCTC

                    *                  *              
       2964 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
          1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT

                                  *                   
       3006 CTCCTCCTATCATCCCT-C-CTATCTACTATCTCTCCTGTCT
          1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT

                                      *  *     
       3046 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
          1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT

       3081 TTGAGGGCTA


Statistics
Matches: 67,  Mismatches: 6, Indels: 4
        0.87            0.08        0.05

Matches are distributed among these distances:
  40   37  0.55
  41    2  0.03
  42   28  0.42

ACGTcount: A:0.09, C:0.46, G:0.03, T:0.43


Consensus pattern (42 bp):   
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT

Done.