Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold926

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7120
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25


Found at i:6650 original size:1 final size:1

Alignment explanation


    Indices: 6644--6714  Score: 88
    Period size: 1  Copynumber: 71.0  Consensus size: 1

       6634 CCTTCTCTTC

                                           *        *    *           * *    *
       6644 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAACAAAACAAAAAAAAAAAGAGAAAAG
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

                  
       6709 AAAAAA
          1 AAAAAA

       6715 CCTACTTAAG


Statistics
Matches: 58,  Mismatches: 12, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   1   58  1.00

ACGTcount: A:0.92, C:0.04, G:0.04, T:0.00


Consensus pattern (1 bp):   
A

Done.