Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold928
Parameters: 2 7 7 80 10 50 1000
Length:  62206

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
499--531
17
1.9
17
93
0
57
45
0
0
54
0.99
1409--1498
8
11.1
8
70
22
55
41
2
0
56
1.11
1711--1846
4
34.2
4
80
1
85
47
11
2
38
1.55
1715--1836
34
3.6
34
85
0
154
46
13
3
36
1.59
1715--1842
12
10.7
12
77
6
107
46
12
3
37
1.57
2266--2301
16
2.3
15
86
9
54
47
0
0
52
1.00
2878--2929
20
2.7
19
84
3
68
44
3
1
50
1.31
2872--2929
19
3.0
19
80
5
71
41
5
1
51
1.34
2899--2941
19
2.3
19
88
4
61
41
0
0
58
0.98
3149--3259
48
2.3
48
78
15
122
48
0
0
51
1.00
3850--3899
9
5.6
9
77
17
59
34
0
0
66
0.92
5741--5770
7
4.4
7
95
4
53
13
0
0
86
0.57
9529--9563
17
2.1
17
94
0
61
57
0
0
42
0.99
9539--9594
25
2.2
25
78
6
60
48
0
0
51
1.00
9606--9653
21
2.3
21
85
3
62
50
0
2
47
1.12
9711--9773
33
1.9
33
93
6
110
38
0
4
57
1.20
9728--9773
23
2.0
24
86
4
67
36
0
4
58
1.18
9753--9815
15
4.1
16
76
10
60
38
0
3
58
1.14
9698--9838
31
4.6
29
72
18
99
41
0
2
55
1.14
9785--9838
15
3.6
15
76
13
58
50
0
0
50
1.00
10812--10868
30
1.9
30
82
7
71
47
1
14
36
1.54
10960--10984
6
4.2
6
100
0
50
84
0
0
16
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11275--11312
2
19.0
2
100
0
76
50
0
0
50
1.00
11366--11419
14
3.9
13
76
11
54
40
1
0
57
1.09
11570--11594
12
2.1
12
100
0
50
36
24
8
32
1.84
11703--11740
16
2.3
17
82
17
53
31
0
2
65
1.06
12360--12722
182
2.0
179
95
2
656
26
10
19
43
1.83
17250--17307
23
2.4
24
82
5
73
63
1
1
32
1.14
17327--17370
10
4.4
10
83
11
63
43
0
6
50
1.29
17319--17370
15
3.4
15
78
2
59
44
0
5
50
1.26
17325--17372
20
2.5
20
89
3
71
43
0
6
50
1.27
17327--17374
15
3.2
15
78
0
60
41
0
6
52
1.27
21252--21343
12
7.7
12
70
18
57
43
1
1
54
1.14
21248--21309
26
2.4
27
78
8
65
41
0
0
58
0.98
21262--21309
20
2.5
20
86
6
64
45
0
0
54
0.99
21258--21309
6
8.3
6
81
8
59
44
0
0
55
0.99
21270--21307
13
2.9
13
84
11
51
50
0
0
50
1.00
22184--22252
23
2.9
23
80
8
77
55
0
0
44
0.99
25540--25564
3
8.3
3
100
0
50
0
32
0
68
0.90
29509--29533
13
1.9
13
100
0
50
48
32
12
8
1.69
32646--32715
20
3.6
19
71
19
56
58
0
0
41
0.98
32673--32743
20
3.4
20
73
16
63
56
0
0
43
0.99
32636--32719
19
4.4
18
69
24
57
58
0
1
40
1.06
32667--32731
30
2.2
29
79
15
71
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32875--32920
22
2.1
21
84
11
58
45
6
0
47
1.28
33004--33048
18
2.5
18
80
20
58
66
0
0
33
0.92
33045--33102
22
2.7
20
84
10
62
39
3
0
56
1.16
33689--33736
22
2.2
22
81
3
62
29
0
0
70
0.87
33687--33738
16
3.2
17
81
13
65
34
0
0
65
0.93
33706--33744
18
2.2
17
86
4
51
35
0
0
64
0.94
33779--33816
18
2.1
19
90
5
60
55
0
0
44
0.99
33821--33865
21
2.2
20
84
11
56
42
2
0
55
1.12
34192--34219
2
14.0
2
100
0
56
50
0
0
50
1.00
36223--36251
15
1.9
15
100
0
58
41
0
0
58
0.98
36201--36357
84
1.9
84
93
0
269
51
3
3
42
1.33
36553--36911
183
2.0
183
92
2
596
35
21
16
27
1.94
39177--39258
30
2.7
30
85
7
96
53
0
0
46
1.00
39188--39275
47
1.9
45
84
9
115
52
0
0
47
1.00
46917--46958
21
2.0
21
86
4
59
52
7
0
40
1.29
48561--48604
17
2.6
18
82
10
56
38
2
0
59
1.10
48703--48735
15
2.2
15
89
10
50
54
3
3
39
1.31
49292--49327
6
6.5
6
90
9
51
0
50
0
50
1.00
53017--53107
17
5.2
17
69
25
64
42
0
1
56
1.06
53034--53113
32
2.4
33
79
12
83
43
0
1
55
1.08
54574--54628
25
2.2
26
80
9
60
61
0
1
36
1.06
55002--55042
21
2.0
21
90
9
66
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56052--56108
14
4.0
14
71
13
53
49
0
0
50
1.00
56020--56103
28
3.0
27
81
13
100
45
0
0
54
0.99
56138--56193
13
4.3
14
78
17
50
48
0
0
51
1.00
56159--56193
15
2.4
15
90
4
54
48
0
0
51
1.00
56125--56215
44
2.1
43
82
12
105
49
0
0
50
1.00
56357--56395
11
3.4
11
83
13
51
87
0
10
2
0.65
56357--56397
20
2.0
21
86
13
59
82
0
14
2
0.76
61653--61704
15
3.5
15
76
7
52
53
0
1
44
1.11
61711--61737
11
2.5
11
100
0
54
25
0
0
74
0.83

Tables:   1

The End!