Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold93
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1685797
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 216 characters in sequence are not A, C, G, or T
File 2 of 14
Found at i:107101 original size:50 final size:47
Alignment explanation
Indices: 106984--107122 Score: 152
Period size: 49 Copynumber: 2.8 Consensus size: 47
106974 CATCTCCTTC
* *
106984 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTAGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATC-A-GCATTGGCACCTTCATCTT
* **
107033 TAAGTCCAATGTCACTGGCCTTGAATCAGCATTGGCACCTTTTTCTTTCT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATTGGCACCTTCATC--T-T
* *
107083 TAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCAC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAG--CATTGGCAC
107123 AAGCCTAATA
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
47 13 0.17
48 1 0.01
49 27 0.35
50 27 0.35
52 9 0.12
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (47 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCATTGGCACCTTCATCTT
Found at i:107249 original size:52 final size:52
Alignment explanation
Indices: 107181--107684 Score: 288
Period size: 52 Copynumber: 9.5 Consensus size: 52
107171 TTTTTCATCT
* * * *
107181 TTAAGTCTAATGTCGCTGGCCTTGAATCCGCACATTGGTACATTTTTCTTTC
1 TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * * ** *
107233 TTAAGTTTAATATCGCTGGCCTTGAATTAGTATATTGGCACCTTGGTC-ATC
1 TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * *
107284 TTTAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
1 -TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
** * * *
107337 TTAAGTCTAATATTACTGGCTTTGAATCAGCATATTGGCA-CTTTTGTC-ATC
1 TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTT-TCTTTC
** * * * * * *
107388 TTTAAGTCCGATATTGCTGGCCTTAAATCAGCATATCGGCATCTTTATT-ATTC
1 -TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT-TTCTTTC
* * * * ** * *
107441 CTAAGCCCAATGTTTCTAGCCTTGAATCAGCACATTGGCA--TTCTTCTTATC
1 TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTT-TC
* * * * * * * *
107492 TTCAAGTCTAATGTCGCTAGCCGTGAATTAGCAAATTAGCA--TTCTTCGTATC
1 TT-AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTTTC-TTTC
* * * * *
107544 TTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGACACCTTTATTATTCTTCTCATC
1 -TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACC--T-TT-TTC-T-T--TC
* * * *
107605 TTCAAGTCTAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATC-ATC
1 TT-AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * *
107657 TTTAAGCCCAATATCCCTGGCCTTGAAT
1 -TTAAGTCTAATATCGCTGGCCTTGAAT
107685 AAATATATTA
Statistics
Matches: 349, Mismatches: 80, Indels: 46
0.73 0.17 0.10
Matches are distributed among these distances:
49 2 0.01
50 3 0.01
51 12 0.03
52 269 0.77
53 14 0.04
54 1 0.00
56 1 0.00
57 3 0.01
58 6 0.02
59 1 0.00
60 2 0.01
61 35 0.10
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (52 bp):
TTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
Found at i:107356 original size:104 final size:103
Alignment explanation
Indices: 107175--107684 Score: 380
Period size: 104 Copynumber: 4.8 Consensus size: 103
107165 TCATTCTTTT
* * * * **
107175 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCCGCACATTGGTACATTTTTCTTTCTTAAGTT
1 TCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGCC
* * *
107240 TAATATCGCTGGCCTTGAATTAGTATATTGGCACCTTGG
66 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G
* *
107279 TCATCTTTAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGTC
1 TCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGCC
* ** * *
107344 TAATATTACTGGCTTTGAATCAGCATATTGGCACTTTTG
66 CAATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTTG
** * * * * * * * * *
107383 TCATCTTTAAGTCCGATATTGCTGGCCTTAAATCAGCATATCGGCATCTTTATT-ATTCCTAAGC
1 TCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTT-TTCTTTCTTAAGC
* ** * * * *
107447 CCAATGTTTCTAGCCTTGAATCAGCACATTGGCATTCTTC
65 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTG
* * * * * * * *
107487 TTATCTTCAAGTCTAATGTCGCTAGCCGTGAATTAGCAAATTAGCA--TTCTTCGTATCTTTAAG
1 TCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTC-TTTC-TTAAG
* * *
107550 CCCAATATCGCTGGCCTTGAATTAGCATATTGACACCTTTATTATTCTTC
64 CCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C---------CTTG
* * * * *
107600 TCATCTTCAAGTCTAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATC-ATCTTTAAGC
1 TCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC-TTAAGC
*
107664 CCAATATCCCTGGCCTTGAAT
65 CCAATATCGCTGGCCTTGAAT
107685 AAATATATTA
Statistics
Matches: 321, Mismatches: 68, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
101 2 0.01
102 2 0.01
103 2 0.01
104 234 0.73
105 4 0.01
113 73 0.23
115 4 0.01
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (103 bp):
TCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTCTTAAGCC
CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
Found at i:107393 original size:156 final size:157
Alignment explanation
Indices: 107135--107588 Score: 429
Period size: 156 Copynumber: 2.9 Consensus size: 157
107125 GCCTAATATC
* *
107135 GCTAGCCTTGAATCAGCATATTGGCACCTCTCATTCTTTTTCATCTTTAAGTCTAATGTCGCTGG
1 GCTAGCCTTGAATCAGCACATTGGCA-C-CT--TT-TTCTT-ATC-TTAAGTCTAATGTCGCTGG
* * * * **
107200 CCTTGAATCCGCACATTGGTACATTTT-TC-TTTCTTAAGTTTAATATCGCTGGCCTTGAATTAG
59 CCTTGAATCAGCAAATTGGCAC-TTTTGTCATCT-TTAAGTCCAATATCGCTGGCCTTGAATTAG
* * * * *
107263 TATATTGGCACCTTGGTCA-TCTTTAAGTCTAATGTT
122 CATATTGGCACCTTGATCATTC-CTAAGCCCAATGTT
* ** *
107299 GCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTT-TCTTAAGTCTAATATTACTGGCTTTGAA
1 GCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTATCTTAAGTCTAATGTCGCTGGCCTTGAA
* * * * * *
107363 TCAGCATATTGGCACTTTTGTCATCTTTAAGTCCGATATTGCTGGCCTTAAATCAGCATATCGGC
66 TCAGCAAATTGGCACTTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGC
* * *
107428 ATCTTTATTATTCCTAAGCCCAATGTT
131 ACCTTGATCATTCCTAAGCCCAATGTT
* * * *
107455 TCTAGCCTTGAATCAGCACATTGGCA--TTCTTCTTATCTTCAAGTCTAATGTCGCTAGCCGTGA
1 GCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTATCTT-AAGTCTAATGTCGCTGGCCTTGA
* * *
107518 ATTAGCAAATTAGCA-TTCTTCGT-ATCTTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATT
65 ATCAGCAAATTGGCACTT-TT-GTCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATT
*
107581 GACACCTT
128 GGCACCTT
107589 TATTATTCTT
Statistics
Matches: 239, Mismatches: 44, Indels: 22
0.78 0.14 0.07
Matches are distributed among these distances:
154 7 0.03
155 10 0.04
156 180 0.75
157 8 0.03
159 4 0.02
160 2 0.01
162 2 0.01
163 1 0.00
164 25 0.10
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (157 bp):
GCTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTATCTTAAGTCTAATGTCGCTGGCCTTGAA
TCAGCAAATTGGCACTTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGC
ACCTTGATCATTCCTAAGCCCAATGTT
Found at i:107632 original size:113 final size:113
Alignment explanation
Indices: 107480--107684 Score: 295
Period size: 113 Copynumber: 1.8 Consensus size: 113
107470 GCACATTGGC
* * * *
107480 ATTCTTCTTATCTTCAAGTCTAATGTCGCTAGCCGTGAATTAGCAAATTAGCATTCTTCGT-ATC
1 ATTCTTCTCATCTTCAAGTCTAATGTCGCTAGCCGTGAATCAGCAAATTAGCA-CCTTCATCATC
*
107544 TTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGACACCTTTATT
65 TTTAAGCCCAATATCCCTGGCCTTGAATTAGCATATTGACACCTTTATT
* * * * * *
107593 ATTCTTCTCATCTTCAAGTCTAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTATCATCT
1 ATTCTTCTCATCTTCAAGTCTAATGTCGCTAGCCGTGAATCAGCAAATTAGCACCTTCATCATCT
107658 TTAAGCCCAATATCCCTGGCCTTGAAT
66 TTAAGCCCAATATCCCTGGCCTTGAAT
107685 AAATATATTA
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
112 4 0.05
113 76 0.95
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (113 bp):
ATTCTTCTCATCTTCAAGTCTAATGTCGCTAGCCGTGAATCAGCAAATTAGCACCTTCATCATCT
TTAAGCCCAATATCCCTGGCCTTGAATTAGCATATTGACACCTTTATT
Found at i:115240 original size:20 final size:20
Alignment explanation
Indices: 115199--115249 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
115189 TTTTGAAAAA
*
115199 TTCATTTATTTTCATAAGTTT
1 TTCATTT-TTTTCATAAATTT
115220 TTCATTTTTTTC-TGAAATTT
1 TTCATTTTTTTCAT-AAATTT
115240 TTCTATTTTT
1 TTC-ATTTTT
115250 GAAAAATCGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 13 0.48
21 13 0.48
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.67
Consensus pattern (20 bp):
TTCATTTTTTTCATAAATTT
Found at i:115896 original size:13 final size:13
Alignment explanation
Indices: 115878--115902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115868 TTAGAAAGGG
115878 GAGAGAAAAAAAT
1 GAGAGAAAAAAAT
115891 GAGAGAAAAAAA
1 GAGAGAAAAAAA
115903 AAGAAAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.04
Consensus pattern (13 bp):
GAGAGAAAAAAAT
Found at i:117052 original size:166 final size:165
Alignment explanation
Indices: 116770--117128 Score: 422
Period size: 166 Copynumber: 2.2 Consensus size: 165
116760 AATTCCCATA
* * * *
116770 AAATCA-TCTTTCAAAAATTTATTTATTTGCATGAGTTTTTAAATTTTTTCTTAAAATTCTTCTA
1 AAATCAGT-TTTCAAAAATTTACTCATTTGCATGAGTTTTTAAATTTTTTCTCAAAATTCCTCTA
** *
116834 TTTCTGAAATACGAAGTTTTCTACTCCGTAAATTTTTTCTGGAGGATTTTTCTTG-GTTTTTAAT
65 TTTCCCAAATACGAAGTTTTCTACTCCGTAAATTTTTTCTGAAGGATTTTTCTTGAGTTTTTAAT
* *
116898 TTTCAAAAGTCATCAAATATTATTATTTATTTCATATT
130 TAT-AAAAGTCA-CAAATATTATTATTTAATTCATATT
* * * * *
116936 AAATTATTTTTCAAAAATTTACTCATCTT-CATGAGTTTTTTATTTTTTTCCTCGAAATTCCTCT
1 AAATCAGTTTTCAAAAATTTACTCAT-TTGCATGAGTTTTTAAATTTTTT-CTCAAAATTCCTCT
* * *
117000 -TTTCCCAAATACGAAGTTTTCTACTTCGTAAATTTTTTC-GAAGGGATTTTTCTTGATTTTTTG
64 ATTTCCCAAATACGAAGTTTTCTACTCCGTAAATTTTTTCTGAA-GGATTTTTCTTGAGTTTTTA
* *
117063 CTTATAAAATTCACAAATATTATTATTTAATTCATATT
128 ATTATAAAAGTCACAAATATTATTATTTAATTCATATT
* * * *
117101 ATATCAGTTTTGAAAAATTAATTCATTT
1 AAATCAGTTTTCAAAAATTTACTCATTT
117129 TCCTGGGTTT
Statistics
Matches: 164, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
164 2 0.01
165 46 0.28
166 94 0.57
167 22 0.13
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.50
Consensus pattern (165 bp):
AAATCAGTTTTCAAAAATTTACTCATTTGCATGAGTTTTTAAATTTTTTCTCAAAATTCCTCTAT
TTCCCAAATACGAAGTTTTCTACTCCGTAAATTTTTTCTGAAGGATTTTTCTTGAGTTTTTAATT
ATAAAAGTCACAAATATTATTATTTAATTCATATT
Found at i:117238 original size:165 final size:164
Alignment explanation
Indices: 116831--117278 Score: 434
Period size: 165 Copynumber: 2.7 Consensus size: 164
116821 TAAAATTCTT
* * * *
116831 CTATTTCTGAAATACGAAGTTTTCTACTCCGTAAATTTTTTCTGGAGGATTTTTCTTGGTTTTTA
1 CTATTTCAGAAATACGAAGTTTTCTACTCCGTAAATTTTTTCGGGGGGATTTTTC-TAGTTTTTA
* * * * * * *
116896 ATTTTCAAAAGTCATCAAATATTATTATTTATTTCATATTAAATTATTTTTCAAAAATTTACTCA
65 ATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTGAAAAATTAACTCA
* *
116961 TCTTCATGAGTTTTTTATTTTTTTCCTCGAAATTC
130 TCTTCATGAGGTTTTGATTTTTTTCCTCGAAATTC
* ** * ** *
116996 CTCTTTTCCCAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGAAGGGATTTTTCTTGATTTTT
1 CT-ATTTCAGAAATACGAAGTTTTCTACTCCGTAAATTTTTTCGGGGGGATTTTTCTAG-TTTTT
*** * * *
117061 TGCTTATAAAATTCA-CAAATATTATTATTTAATTCATATTATATCAGTTTTGAAAAATTAATTC
64 AATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTGAAAAATTAACTC
* * * * *
117125 ATTTTCCTG-GGTTTTGATTTTTTTCTTTGAACTTTTC
129 ATCTTCATGAGGTTTTGATTTTTTTCCTCGAA--ATTC
* * * **
117162 CTATTTCAGAAATATGGAGTTTTCTACTCCGT-AATTGTTTTCGGGGGGACTTTTCTCAGTTTAA
1 CTATTTCAGAAATACGAAGTTTTCTACTCCGTAAATT-TTTTCGGGGGGATTTTTCT-AGTTTTT
* * * * * *
117226 AATTTTTAAAATTCATCTAATATTGTTATTAAACTCCTAGTAAATCAGTTTTG
64 AATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTG
117279 TGAAACTCAA
Statistics
Matches: 224, Mismatches: 52, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
164 22 0.10
165 107 0.48
166 95 0.42
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.49
Consensus pattern (164 bp):
CTATTTCAGAAATACGAAGTTTTCTACTCCGTAAATTTTTTCGGGGGGATTTTTCTAGTTTTTAA
TTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTGAAAAATTAACTCAT
CTTCATGAGGTTTTGATTTTTTTCCTCGAAATTC
Found at i:117308 original size:14 final size:14
Alignment explanation
Indices: 117289--117319 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
117279 TGAAACTCAA
117289 TTTATTTTTTAATT
1 TTTATTTTTTAATT
*
117303 TTTATTTTTTGATT
1 TTTATTTTTTAATT
117317 TTT
1 TTT
117320 TTACGTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (14 bp):
TTTATTTTTTAATT
Found at i:119233 original size:30 final size:29
Alignment explanation
Indices: 119171--119233 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
119161 AGGCTCTCAG
**
119171 TTTAAAAAATTTCTCCCCCTTGATAATCA
1 TTTAAAAAATTTCTCCCCCTTGATAAAAA
* *
119200 TTTAAAAGATTTTCTCCCTCTTGATAAAAA
1 TTTAAAA-AATTTCTCCCCCTTGATAAAAA
119230 TTTA
1 TTTA
119234 TTTTCAAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (29 bp):
TTTAAAAAATTTCTCCCCCTTGATAAAAA
Found at i:127203 original size:13 final size:13
Alignment explanation
Indices: 127185--127214 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
127175 ACAATTCATC
*
127185 ATGTATCGGTACA
1 ATGTATCGATACA
127198 ATGTATCGATACA
1 ATGTATCGATACA
127211 ATGT
1 ATGT
127215 GCCATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:127221 original size:33 final size:32
Alignment explanation
Indices: 127163--127231 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 32
127153 CCGTTTGAAG
*
127163 CAATGTATCGATACAATTCATCATGTATCGGTA
1 CAATGTATCGATACAATTCA-CATGTATCGATA
127196 CAATGTATCGATACAATGTGC-CATGTATCGATA
1 CAATGTATCGATACAAT-T-CACATGTATCGATA
127229 CAA
1 CAA
127232 ATAGTGGTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
33 31 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (32 bp):
CAATGTATCGATACAATTCACATGTATCGATA
Found at i:127304 original size:19 final size:19
Alignment explanation
Indices: 127260--127315 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
127250 CTACCAGTTT
* **
127260 CATGTATCAATACAATTGTG
1 CATGTATCGATACAA-TGAA
127280 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
127299 CATGTATCGATACAATG
1 CATGTATCGATACAATG
127316 TATCGACACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:128178 original size:21 final size:21
Alignment explanation
Indices: 128139--128179 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
128129 ACTTCATGGG
* *
128139 AGAGCTATTTTATGAATTTTT
1 AGAGATATTTTAGGAATTTTT
*
128160 AGAGATATTTTAGGCATTTT
1 AGAGATATTTTAGGAATTTT
128180 AACATTTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.49
Consensus pattern (21 bp):
AGAGATATTTTAGGAATTTTT
Found at i:129429 original size:156 final size:153
Alignment explanation
Indices: 129135--129762 Score: 571
Period size: 156 Copynumber: 4.0 Consensus size: 153
129125 TAGTATCTAC
* * * *
129135 TAGGGGTATCGGGTACTTTTACGTCGAAGGTATCCCTAGGGGTATTTTTGTAATTTTTTAGAACC
1 TAGGGATAT-GGGTACTTTCACGTCGAAAGTATCCCTAGGGGTATTTTGGTAATTTTTTAGAACC
** ** * *
129200 AACTCCTACATCATTGCCAGGTCCACTTTTATGCCAAAGATAGATATTTAGGATAGGTTCATCCC
65 AACTCCTAGGTCATCACCAGGTCCACTTTTATGCCGAAGGTAGATATTTAGGATAGGTTCATCCC
*
129265 TTCTATAATCCTTTTTAAGTCCTT
130 ATCTATAATCCTTTTTAAGTCCTT
*
129289 TAGGGATACTGGGATACTTTCACGTCGAAAGTATACCCATAGGGGCATTTTGGTAATTTTTTAGA
1 TAGGGATA-TGGG-TACTTTCACGTCGAAAGTAT-CCC-TAGGGGTATTTTGGTAATTTTTTAGA
* * * * *
129354 ACCAATTCCTAGGTCGTCACTAGGTCCAC-TTTATGCCGAAGGTGGGTATTTAGGATAGGTTCAT
62 ACCAACTCCTAGGTCATCACCAGGTCCACTTTTATGCCGAAGGTAGATATTTAGGATAGGTTCAT
* ** *
129418 CTCATCTATAATTTTTTTTAAGTCTTT
127 CCCATCTATAATCCTTTTTAAGTCCTT
* * * * * * ** *
129445 TAGGGGTATTAGGTACTTTTACGTCGAAGGTATCCCTTAGGGGTTTTTTTGTAATTTTCCAAAAC
1 TAGGGATA-TGGGTACTTTCACGTCGAAAGTATCCC-TAGGGGTATTTTGGTAATTTTTTAGAAC
* ** * * *
129510 TAACTCCTAGGTCATCATCACTA-GTCTGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCA
64 CAACTCCTAGGTCATCA-C-C-AGGTCCACTTTTATGCCGAAGGTAGATATTTAGGATAGGTTCA
* * * *
129574 TCCTAGTTTGTAATCCTTTTTAAATCCTT
126 TCCCA-TCTATAATCCTTTTTAAGTCCTT
* * * * *
129603 TAGGGATATCGGGCAC-TTCTACATC-CAAGATATCCCCTAGGGATATTTTGGTAATTTTTTGGA
1 TAGGGATAT-GGGTACTTTC-ACGTCGAAAG-TAT-CCCTAGGGGTATTTTGGTAATTTTTTAGA
* * * * * *** * *
129666 ATCAAGTCCTTGGTTATCACCGGGTTTGCTTTTATACCGAAGGTAGATATTTAGAATAGGTTCAT
62 ACCAACTCCTAGGTCATCACCAGGTCCACTTTTATGCCGAAGGTAGATATTTAGGATAGGTTCAT
* * *
129731 CCCTTTTAAAATCCTTTTTAAGTCCTT
127 CCCATCTATAATCCTTTTTAAGTCCTT
129758 TAGGG
1 TAGGG
129763 GTATTGGGCG
Statistics
Matches: 381, Mismatches: 79, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
154 49 0.13
155 63 0.17
156 109 0.29
157 89 0.23
158 68 0.18
159 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (153 bp):
TAGGGATATGGGTACTTTCACGTCGAAAGTATCCCTAGGGGTATTTTGGTAATTTTTTAGAACCA
ACTCCTAGGTCATCACCAGGTCCACTTTTATGCCGAAGGTAGATATTTAGGATAGGTTCATCCCA
TCTATAATCCTTTTTAAGTCCTT
Found at i:129708 original size:313 final size:310
Alignment explanation
Indices: 129135--129813 Score: 724
Period size: 313 Copynumber: 2.2 Consensus size: 310
129125 TAGTATCTAC
* ** *
129135 TAGGGGTATCGGGTACTTTTACGTCGAAGGTATCCCTAGGGGTATTTTTGTAATTTTTTAGAACC
1 TAGGGGTATTGGGTACTTTTACGTCGAAGGTATCCCTAGGGGTATTTTTGTAATTTTCCAAAACC
**
129200 AACTCCTACATCATTGCCAGGTCCACTTTTATGCCAAAGATAGATATTTAGGATAGGTTCATCCC
66 AACTCCTACATCATCACCAGGTCCACTTTTATGCCAAAGATAGATATTTAGGATAGGTTCATCCC
* * * *
129265 TTCTATAATCCTTTTTAAGTCCTTTAGGGATACTGGGATACTTTCACGTCGAAAGTATACCCATA
131 TTCTATAATCCTTTTTAAATCCTTTAGGGATACTGGGACACTTTCACATCCAAAGTATACCCATA
* * * * *
129330 GGGGCATTTTGGTAATTTTTTAGAACCAATTCCTAGGTCGTCACTAGGTCCACTTTATGCCGAAG
196 GGGACATTTTGGTAATTTTTTAGAACCAAGTCCTAGGTCATCACCAGGTCCACTTTATACCGAAG
* * * * * ** *
129395 GTGGGTATTTAGGATAGGTTCATCTCATCTATAATTTTTTTTAAGTCTTT
261 GTAGATATTTAGAATAGGTTCATCCCATCTAAAATCCTTTTTAAGTCCTT
* *
129445 TAGGGGTATTAGGTACTTTTACGTCGAAGGTATCCCTTAGGGGTTTTTTTGTAATTTTCCAAAAC
1 TAGGGGTATTGGGTACTTTTACGTCGAAGGTATCCC-TAGGGGTATTTTTGTAATTTTCCAAAAC
* * ** ** * * *
129510 TAACTCCTAGGTCATCATCACTA-GTCTGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCA
65 CAACTCCTA---CATCATCACCAGGTCCACTTTTATGCCAAAGATAGATATTTAGGATAGGTTCA
* *
129574 T-CCTAGTTTGTAATCCTTTTTAAATCCTTTAGGGATA-TCGGG-CAC-TTCTACATCC-AAG-A
127 TCCCT--TCTATAATCCTTTTTAAATCCTTTAGGGATACT-GGGACACTTTC-ACATCCAAAGTA
* * * * * * * ***
129633 TATCCCCTAGGGATATTTTGGTAATTTTTTGGAATCAAGTCCTTGGTTATCACCGGGTTTGCTTT
188 TA-CCCATAGGGACATTTTGGTAATTTTTTAGAACCAAGTCCTAGGTCATCACCAGGTCCAC-TT
* *
129698 TATACCGAAGGTAGATATTTAGAATAGGTTCATCCCTTTTAAAATCCTTTTTAAGTCCTT
251 TATACCGAAGGTAGATATTTAGAATAGGTTCATCCCATCTAAAATCCTTTTTAAGTCCTT
** * * * *
129758 TAGGGGTATTGGGCGCTTCTACGTCAAAGGTATCCCCTAAGGGCATTTTTGTAATT
1 TAGGGGTATTGGGTACTTTTACGTCGAAGGTAT-CCCTAGGGGTATTTTTGTAATT
129814 ATTTCTTAAA
Statistics
Matches: 302, Mismatches: 56, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
310 34 0.11
311 35 0.12
312 54 0.18
313 137 0.45
314 42 0.14
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (310 bp):
TAGGGGTATTGGGTACTTTTACGTCGAAGGTATCCCTAGGGGTATTTTTGTAATTTTCCAAAACC
AACTCCTACATCATCACCAGGTCCACTTTTATGCCAAAGATAGATATTTAGGATAGGTTCATCCC
TTCTATAATCCTTTTTAAATCCTTTAGGGATACTGGGACACTTTCACATCCAAAGTATACCCATA
GGGACATTTTGGTAATTTTTTAGAACCAAGTCCTAGGTCATCACCAGGTCCACTTTATACCGAAG
GTAGATATTTAGAATAGGTTCATCCCATCTAAAATCCTTTTTAAGTCCTT
Found at i:132590 original size:20 final size:21
Alignment explanation
Indices: 132565--132618 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
132555 GTTACAAGCA
*
132565 ATGTATCGATACAATT-CATC
1 ATGTATCGATACAATTGCACC
*
132585 ATGTATCGATAC-ATTGTACC
1 ATGTATCGATACAATTGCACC
132605 ATGTATCGATACAA
1 ATGTATCGATACAA
132619 ACAGTGATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 26 0.87
21 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACAATTGCACC
Found at i:132672 original size:20 final size:20
Alignment explanation
Indices: 132647--132706 Score: 77
Period size: 19 Copynumber: 3.0 Consensus size: 20
132637 CTGCCAAGTT
132647 CATGTATCGATACAATTATC
1 CATGTATCGATACAATTATC
* **
132667 CATGTATCGCTACAA-TAAA
1 CATGTATCGATACAATTATC
132686 CATGTATCGATACAATGTATC
1 CATGTATCGATACAAT-TATC
132707 GATACAAAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 16 0.50
20 14 0.44
21 2 0.06
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTATC
Found at i:132705 original size:13 final size:13
Alignment explanation
Indices: 132687--132713 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
132677 TACAATAAAC
132687 ATGTATCGATACA
1 ATGTATCGATACA
132700 ATGTATCGATACA
1 ATGTATCGATACA
132713 A
1 A
132714 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:141712 original size:19 final size:19
Alignment explanation
Indices: 141688--141739 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
141678 CATTTGAGTA
141688 ATGTATCGATACAACACTT
1 ATGTATCGATACAACACTT
141707 ATGTATCGATACAACACTT
1 ATGTATCGATACAACACTT
141726 ATGTATCGATACAA
1 ATGTATCGATACAA
141740 ATCGTTGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAACACTT
Found at i:143667 original size:21 final size:21
Alignment explanation
Indices: 143643--143710 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
143633 AAAGATGATG
143643 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
* *
143664 AAGGCAAG-CAATAT--TGGACTTA
1 AAGG--TGCCAATATGCT-GA-TTC
*
143686 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
143707 AAGG
1 AAGG
143711 CCAGCTATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:143704 original size:43 final size:43
Alignment explanation
Indices: 143643--144877 Score: 1338
Period size: 43 Copynumber: 27.1 Consensus size: 43
143633 AAAGATGATG
* * * *
143643 AAGGTGCCAATATGCTGATTCAAGGCAAGCAATATTGGACTTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* *
143686 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACATCAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T----TA
* * *
143734 GAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
143778 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* * *
143826 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
143870 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* *
143918 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
143962 AAGGTGCCAATGTGCCGATTCAAGGCCAGCTACATTGGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* *
144010 GAAGGTGCCAATATACTGATTCAAGGCCAGCTACATTGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
144054 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* * * *
144102 GAAGGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTG
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
144146 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
144189 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* *
144237 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
144281 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* *
144329 GAAGGTGCCAATATGCTGATTCAAGG-CAGCTACTTTGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
144372 AAGGTGCCAATGTGCTGATTCAAGGCCAGTTACATTGGACTTCAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* * *
144420 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTG
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
144464 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T----TA
* * *
144512 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* * * *
144556 AAGGTGCCAATGGGTTGATTCAAGGCCAACTAAATTGGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* * *
144604 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
144648 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAATTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* * * *
144696 GAAGGTGCCAATATGATGATTCAAGGCCAGCTATATTGGACTTG
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
144740 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A
* * * *
144788 GAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTG
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* *
144832 GAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
144875 AAG
1 AAG
144878 AAGAAGGTGC
Statistics
Matches: 1026, Mismatches: 93, Indels: 146
0.81 0.07 0.12
Matches are distributed among these distances:
42 24 0.02
43 516 0.50
44 10 0.01
48 28 0.03
49 448 0.44
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (43 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
Found at i:143757 original size:92 final size:89
Alignment explanation
Indices: 143642--144902 Score: 1341
Period size: 92 Copynumber: 13.8 Consensus size: 89
143632 TAAAGATGAT
* * * * *
143642 GAAGGTGCCAATATGCTGATTCAAGGCAAGCAATATTGGACTTA-AAGGTGCCAATGTGCTGATT
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATATGCTGATT
143706 CAAGGCCAGCTATATTGGACATCAAGAA
66 CAAGGCCAGCTATATTGGAC-T---GAA
* * * *
143734 GAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTA-AAGGTGCCAATGTGCTGATT
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATATGCTGATT
* *
143798 CAAGGCCAGCTACATTAGACTTAAAGAA
66 CAAGGCCAGCTATATTGGAC-T---GAA
* * * *
143826 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTA-AAGGTGCCAATGTGCTGATT
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATATGCTGATT
*
143890 CAAGGCCAGCTACATTGGACTTAAAGAA
66 CAAGGCCAGCTATATTGGAC-T---GAA
* * * *
143918 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-AAGGTGCCAATGTGCCGATT
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATATGCTGATT
*
143982 CAAGGCCAGCTACATTGGACTTAAAGAA
66 CAAGGCCAGCTATATTGGAC-T---GAA
* * *
144010 GAAGGTGCCAATATACTGATTCAAGGCCAGCTACATTGGACTTA-AAGGTGCCAATGTGCTGATT
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATATGCTGATT
*
144074 CAAGGCCAGCTACATTGGACTTAAAGAA
66 CAAGGCCAGCTATATTGGAC-T---GAA
* * * * *
144102 GAAGGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTT-GGAGGTGCCAATGTGCTGATT
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATATGCTGATT
* *
144166 CAAGGCCAGCTACATTGGACT-TA
66 CAAGGCCAGCTATATTGGACTGAA
144189 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATATGC
*
144253 TGATTCAAGGCCAGCTATATTGGACT-TA
61 TGATTCAAGGCCAGCTATATTGGACTGAA
144281 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATATGC
*
144345 TGATTCAAGG-CAGCTACT-TTGGACT-TA
61 TGATTCAAGGCCAGCTA-TATTGGACTGAA
*
144372 -AAGGTGCCAATGTGCTGATTCAAGGCCAGTTACATTGGACTTCAAGAAGAAGGTGCCAATATGC
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATATGC
144436 TGATTCAAGGCCAGCTATATTGGACTTG--
61 TGATTCAAGGCCAGCTATATTGGAC-TGAA
144464 G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGTAGAAGGTGCCAATATGC
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T----TAGAAGGTGCCAATATGC
* *
144528 TGATTCAAGGCCAGCTATAATGGACT-TA
61 TGATTCAAGGCCAGCTATATTGGACTGAA
* * * *
144556 -AAGGTGCCAATGGGTTGATTCAAGGCCAACTAAATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATATGC
* *
144620 TGATTCAAGGCCAGCTATAATGGACT-TA
61 TGATTCAAGGCCAGCTATATTGGACTGAA
* *
144648 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAATTAAAGAAGAAGGTGCCAATATGA
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATATGC
*
144712 TGATTCAAGGCCAGCTATATTGGACT--T
61 TGATTCAAGGCCAGCTATATTGGACTGAA
144739 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATATGC
*
144804 TGATTCAAGGCCAACTATATTGGACTTG--
61 TGATTCAAGGCCAGCTATATTGGAC-TGAA
*
144832 G-AGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----AGAAGGTGCCAATATGC
144896 TGATTCA
61 TGATTCA
144903 TTATTTTTAA
Statistics
Matches: 1094, Mismatches: 46, Indels: 58
0.91 0.04 0.05
Matches are distributed among these distances:
86 39 0.04
87 2 0.00
91 91 0.08
92 957 0.87
93 4 0.00
97 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (89 bp):
GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAGAAGGTGCCAATATGCTGATT
CAAGGCCAGCTATATTGGACTGAA
Found at i:144057 original size:22 final size:22
Alignment explanation
Indices: 144032--144099 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
144022 ATACTGATTC
144032 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
* * *
144054 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTACAT-TG--GACTTA
144075 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
144097 AAG
1 AAG
144100 AAGAAGGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCTACATTGGACTTA
Found at i:144192 original size:22 final size:22
Alignment explanation
Indices: 144167--144234 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
144157 GTGCTGATTC
144167 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
* * *
144189 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTACAT-TG--GACTTA
144210 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
144232 AAG
1 AAG
144235 AAGAAGGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCTACATTGGACTTA
Found at i:144213 original size:21 final size:21
Alignment explanation
Indices: 144147--144213 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
144137 TTGGACTTGG
144147 AGGTGCCAATGTGCTGATTCA
1 AGGTGCCAATGTGCTGATTCA
* * *
144168 AGGCCAGCTACAT-TG--GACTTAA
1 AGG--TGCCA-ATGTGCTGA-TTCA
144190 AGGTGCCAATGTGCTGATTCA
1 AGGTGCCAATGTGCTGATTCA
144211 AGG
1 AGG
144214 CCAGCTACAT
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 11 0.33
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (21 bp):
AGGTGCCAATGTGCTGATTCA
Found at i:144878 original size:184 final size:182
Alignment explanation
Indices: 143641--144902 Score: 1524
Period size: 184 Copynumber: 6.9 Consensus size: 182
143631 TTAAAGATGA
* * * * *
143641 TGAAGGTGCCAATATGCTGATTCAAGGCAAGCAATATTGGACTT----A-AAGGTGCCAATGTGC
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGAAGGTGCCAATATGC
* * *
143701 TGATTCAAGGCCAGCTATATTGGACATCAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAACT
66 TGATTCAAGGCCAGCTATATTGGAC-T--TG--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCT
* * *
143766 ATATTGGACTT----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACT
125 ACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
* * *
143819 TAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTT----A-AAGGTGCCA
1 T------GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGAAGGTGCCA
* * *
143879 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGG
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT---G--G-AGGTGCCAATGTGCTGATTCAAGG
* * *
143944 CCAGCTATATTGGACTT----A-AAGGTGCCAATGTGCCGATTCAAGGCCAGCTACATTGGACT
119 CCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
* *
144003 TAAAGAAGAAGGTGCCAATATACTGATTCAAGGCCAGCTACATTGGACTT----A-AAGGTGCCA
1 T------GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGAAGGTGCCA
* * *
144063 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGG
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT---G--G-AGGTGCCAATGTGCTGATTCAAGG
* * *
144128 ACAGCTATATTGGACTT---G-G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
119 CCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
*
144187 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAGAAGAAGGTGCCAATATG
**
144252 CTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
65 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
144317 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGG-CAGCTACTTTGGACT
130 GGACTTAAAG-AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
* *
144370 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTTACATTGGACTTCAAGAAGAAGGTGCCAATATG
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAGAAGAAGGTGCCAATATG
144435 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
65 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* *
144500 GGACTTAAAGTAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACT
130 GGACTTAAAG-AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
* * * * *
144554 TAAAGGTGCCAATGGGTTGATTCAAGGCCAACTAAATTGGACTTAAAGAAGAAGGTGCCAATATG
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAGAAGAAGGTGCCAATATG
* **
144619 CTGATTCAAGGCCAGCTATAATGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
65 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * *
144684 GGAATTAAAGAAGAAGGTGCCAATATGATGATTCAAGGCCAGCTATATTGGACT
130 GGACTTAAAG-AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
144738 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAGAAGAAGGTGCCAATATG
* *
144803 CTGATTCAAGGCCAACTATATTGGACTTGGAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATT
65 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
144868 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCA
130 GGACTTAAAG-AGAAGGTGCCAATATGCTGATTCA
144903 TTATTTTTAA
Statistics
Matches: 1002, Mismatches: 58, Indels: 42
0.91 0.05 0.04
Matches are distributed among these distances:
178 79 0.08
181 1 0.00
183 180 0.18
184 742 0.74
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (182 bp):
TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
GACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
Found at i:144878 original size:276 final size:273
Alignment explanation
Indices: 143641--144902 Score: 1542
Period size: 276 Copynumber: 4.6 Consensus size: 273
143631 TTAAAGATGA
* * * * *
143641 TGAAGGTGCCAATATGCTGATTCAAGGCAAGCAATATTGGACTT----A-AAGGTGCCAATGTGC
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGC
* * *
143701 TGATTCAAGGCCAGCTATATTGGACATCAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAACT
66 TGATTCAAGGCCAGCTATATTGGAC-T--TG--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCT
* * *
143766 ATATTGGACTT-----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGA
125 ACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT----A
* * *
143825 AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTT-A-AAGGTGCCAATGTGCTGA
186 AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTGAGAAGGTGCCAATATGCTGA
143888 TTCAAGGCCAGCTACATTGGACT
251 TTCAAGGCCAGCTACATTGGACT
* *
143911 TAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A-AAGGTGCCA
1 T------GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCA
* * * * *
143971 ATGTGCCGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATACTGATTCAAGG
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT---G--G-AGGTGCCAATGTGCTGATTCAAGG
*
144036 CCAGCTACATTGGACTT-----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
119 CCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
* * *
144095 TAAAGAAGAAGGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTG-G-AGGTGCCAATG
184 T----AAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTGAGAAGGTGCCAATA
144158 TGCTGATTCAAGGCCAGCTACATTGGACT
245 TGCTGATTCAAGGCCAGCTACATTGGACT
*
144187 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-AGAAGGTGCCAATATG
**
144252 CTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
65 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
144317 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGG-CAGCTACTTTGGACTT-A-AAGGTGC
130 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGC
* *
144379 CAATGTGCTGATTCAAGGCCAGTTACATTGGACTTCAAGAAGAAGGTGCCAATATGCTGATTCAA
195 CAATATGCTGATTCAAGGCCAGCTACATTGGACTT---G-AGAAGGTGCCAATATGCTGATTCAA
*
144444 GGCCAGCTATATTGGACT
256 GGCCAGCTACATTGGACT
*
144462 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGTAGAAGGTGCCAATATG
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-AGAAGGTGCCAATATG
* ** * * * *
144527 CTGATTCAAGGCCAGCTATAATGGACTTAAAGGTGCCAATGGGTTGATTCAAGGCCAACTAAATT
65 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* *
144592 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACTT-A-AAGGTGC
130 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGC
* * *
144655 CAATGTGCTGATTCAAGGCCAGCTACATTGGAATTAAAGAAGAAGGTGCCAATATGATGATTCAA
195 CAATATGCTGATTCAAGGCCAGCTACATTGGACTT---G-AGAAGGTGCCAATATGCTGATTCAA
*
144720 GGCCAGCTATATTGGACT
256 GGCCAGCTACATTGGACT
144738 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
1 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-AGAAGGTGCCAATATG
* *
144803 CTGATTCAAGGCCAACTATATTGGACTTGGAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATT
65 CTGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
144868 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCA
130 GGACTTAAAGAAGAAGGTGCCAATATGCTGATTCA
144903 TTATTTTTAA
Statistics
Matches: 907, Mismatches: 55, Indels: 54
0.89 0.05 0.05
Matches are distributed among these distances:
269 38 0.04
270 81 0.09
272 1 0.00
274 1 0.00
275 216 0.24
276 570 0.63
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (273 bp):
TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
GACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCC
AATATGCTGATTCAAGGCCAGCTACATTGGACTTGAGAAGGTGCCAATATGCTGATTCAAGGCCA
GCTACATTGGACT
Found at i:145005 original size:21 final size:19
Alignment explanation
Indices: 144976--145014 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
144966 AAGTTCTTGT
144976 TTTTCTTAGCTAATTCTTTA
1 TTTTCTTAGC-AATTCTTTA
*
144996 TTTTCATTAGCCATTCTTT
1 TTTTC-TTAGCAATTCTTT
145015 TAATATCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTCTTAGCAATTCTTTA
Found at i:145919 original size:21 final size:21
Alignment explanation
Indices: 145895--145963 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
145885 AAAGATGATG
145895 AAGGCGCCAATATGCTGATTC
1 AAGGCGCCAATATGCTGATTC
*
145916 AAGGCAAG-CAATAT--TGGACTTA
1 AAGGC--GCCAATATGCT-GA-TTC
* *
145938 AAGGTGCCAATGTGCTGATTC
1 AAGGCGCCAATATGCTGATTC
145959 AAGGC
1 AAGGC
145964 CAGCTACATT
Statistics
Matches: 36, Mismatches: 5, Indels: 14
0.65 0.09 0.25
Matches are distributed among these distances:
20 2 0.06
21 18 0.50
22 14 0.39
23 2 0.06
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (21 bp):
AAGGCGCCAATATGCTGATTC
Found at i:146013 original size:49 final size:47
Alignment explanation
Indices: 145900--146192 Score: 358
Period size: 43 Copynumber: 6.4 Consensus size: 47
145890 TGATGAAGGC
* * *
145900 GCCAATATGCTGATTCAAGGCAAGCAATATTGGACTTAAAG----GT
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAAAGT
*
145943 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAAAAAGT
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG--AAAAGT
*
145992 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG----GT
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAAAGT
* *
146035 GCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGAAGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA-AA-GT
* *
146084 GCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG----GT
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAAAGT
*
146127 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA-AA-GT
146176 GCCAATATGCTGATTCA
1 GCCAATATGCTGATTCA
146193 TTATTTTTAA
Statistics
Matches: 217, Mismatches: 15, Indels: 30
0.83 0.06 0.11
Matches are distributed among these distances:
43 117 0.54
49 100 0.46
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (47 bp):
GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAAAGT
Found at i:146022 original size:92 final size:92
Alignment explanation
Indices: 145894--146192 Score: 535
Period size: 92 Copynumber: 3.2 Consensus size: 92
145884 TAAAGATGAT
* * *
145894 GAAGGCGCCAATATGCTGATTCAAGGCAAGCAATATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
145959 AAGGCCAGCTACATTGGACTTAAAGAA
66 AAGGCCAGCTACATTGGACTTAAAGAA
* *
145986 AAAAGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
*
146051 AAGGCCAGCTACATTAGACTTAAAGAA
66 AAGGCCAGCTACATTGGACTTAAAGAA
*
146078 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGCCAATGTGCTGATTC
1 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
146143 AAGGCCAGCTACATTGGACTTAAAGAA
66 AAGGCCAGCTACATTGGACTTAAAGAA
146170 GAAGGTGCCAATATGCTGATTCA
1 GAAGGTGCCAATATGCTGATTCA
146193 TTATTTTTAA
Statistics
Matches: 197, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 197 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (92 bp):
GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
AAGGCCAGCTACATTGGACTTAAAGAA
Found at i:146295 original size:21 final size:19
Alignment explanation
Indices: 146266--146304 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
146256 AAGTTCTTGT
146266 TTTTCTTAGCTAATTCTTTA
1 TTTTCTTAGC-AATTCTTTA
*
146286 TTTTCATTAGCCATTCTTT
1 TTTTC-TTAGCAATTCTTT
146305 TAATATCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTCTTAGCAATTCTTTA
Found at i:148546 original size:13 final size:13
Alignment explanation
Indices: 148506--148558 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
148496 CTTTTACAAG
148506 CAATGTATCGATA
1 CAATGTATCGATA
148519 CAA--T-TC-AT-
1 CAATGTATCGATA
148527 C-ATGTATCGATA
1 CAATGTATCGATA
148539 CAATGTATCGATA
1 CAATGTATCGATA
*
148552 CATTGTA
1 CAATGTA
148559 CCATTTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:148568 original size:33 final size:33
Alignment explanation
Indices: 148506--148571 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
148496 CTTTTACAAG
*
148506 CAATGTATCGATACAATTCATCATGTATCGATA
1 CAATGTATCGATACAATTCACCATGTATCGATA
* *
148539 CAATGTATCGATAC-ATTGTACCATTTATCGATA
1 CAATGTATCGATACAATT-CACCATGTATCGATA
148572 AAAACAGTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 3 0.10
33 26 0.90
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACAATTCACCATGTATCGATA
Found at i:148658 original size:19 final size:19
Alignment explanation
Indices: 148604--148658 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
148594 TGCCAAGTTT
**
148604 ATGTATCAATACAATTGTCC
1 ATGTATCAATACAA-TGAAC
*
148624 ATGTATCAATATAATGAAC
1 ATGTATCAATACAATGAAC
*
148643 ATGTATCGATACAATG
1 ATGTATCAATACAATG
148659 TATCGATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (19 bp):
ATGTATCAATACAATGAAC
Found at i:148661 original size:13 final size:13
Alignment explanation
Indices: 148643--148669 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
148633 TATAATGAAC
148643 ATGTATCGATACA
1 ATGTATCGATACA
148656 ATGTATCGATACA
1 ATGTATCGATACA
148669 A
1 A
148670 AACATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:150202 original size:16 final size:17
Alignment explanation
Indices: 150169--150202 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
150159 GAAAAATGAA
150169 AATGAAAAAAAACGTGT
1 AATGAAAAAAAACGTGT
*
150186 AATGAAGAAAAAC-TGT
1 AATGAAAAAAAACGTGT
150202 A
1 A
150203 GAAAAAGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.59, C:0.06, G:0.18, T:0.18
Consensus pattern (17 bp):
AATGAAAAAAAACGTGT
Found at i:150923 original size:132 final size:134
Alignment explanation
Indices: 150778--151021 Score: 330
Period size: 132 Copynumber: 1.8 Consensus size: 134
150768 AAATTAATCA
* * * * * * ***
150778 TTTTTACATATTTCTATTATTCCTATGGTTATTCGTAGGGGAATAGAAATCTTTAAAGTTTTTCG
1 TTTTTACAGATTTCTAATATTCCTATAGTTATTCGTAGGGGAATAAAAACCTTCAAAACATTTCG
*
150843 TATCTTTTTAGTTCTTTATTAAGGTACAAAAT-AAATTTTGGAAATTAAAAATTAAATATTATCT
66 TATCTTTTTAGTTCTCTATTAAGGTACAAAATGAAATTTTGGAAATTAAAAATTAAATATTATCT
150907 TAAT
131 TAAT
* * *
150911 TTTTTA-AGATTTCTAATATTCTTATAGTTTTTCGTAGGGGTATAAAAACCTTCAAAACATTTCG
1 TTTTTACAGATTTCTAATATTCCTATAGTTATTCGTAGGGGAATAAAAACCTTCAAAACATTTCG
* * *
150975 TATCTTTTTAGTTCTCTATTAAGGTACGAAATGAGATTTTTGAAATT
66 TATCTTTTTAGTTCTCTATTAAGGTACAAAATGAAATTTTGGAAATT
151022 TACAACGTCC
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
132 76 0.81
133 18 0.19
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.46
Consensus pattern (134 bp):
TTTTTACAGATTTCTAATATTCCTATAGTTATTCGTAGGGGAATAAAAACCTTCAAAACATTTCG
TATCTTTTTAGTTCTCTATTAAGGTACAAAATGAAATTTTGGAAATTAAAAATTAAATATTATCT
TAAT
Found at i:154974 original size:42 final size:42
Alignment explanation
Indices: 154879--155846 Score: 346
Period size: 42 Copynumber: 23.0 Consensus size: 42
154869 GATTTCGCCC
** * *
154879 GTCGGCTTTGACCGT-GGAGACTTTTTTACCTTTAGTCTACCC
1 GTCGGCTTTGACC-TCGGAGACTTCCTTACCTTTAGTCTGCCT
* * ** *
154921 ATTGATTTTGACCTCGGAGACTTCCTTACCTTTAGTCTACCT
1 GTCGGCTTTGACCTCGGAGACTTCCTTACCTTTAGTCTGCCT
* * *
154963 GTCGGCATTGACC-CTAGAGACTTCCTTACCTTTAGTCTG-TT
1 GTCGGCTTTGACCTC-GGAGACTTCCTTACCTTTAGTCTGCCT
* ** * * *
155004 CGTTGGCTTTGACC-CTAATGACTTTCTTACCTTTTGTTTGCCT
1 -GTCGGCTTTGACCTCGGA-GACTTCCTTACCTTTAGTCTGCCT
* ** * * * *
155047 GTCAGCTTTGACCTTAGAGGCTTCTTTACCTTTAGTCTACCA
1 GTCGGCTTTGACCTCGGAGACTTCCTTACCTTTAGTCTGCCT
* * * * * * * *
155089 GTCGACTTTAATACT-AGAGGCTTCTTTACCTTTAGTCTACCC
1 GTCGGCTTTGA-CCTCGGAGACTTCCTTACCTTTAGTCTGCCT
* * * * *
155131 GTCGACCTTTTACCTC-GAAACTTCTTTACTTTTAGTCTGCC-
1 GTCG-GCTTTGACCTCGGAGACTTCCTTACCTTTAGTCTGCCT
* * * * * *
155172 ATCGACTTTGACCTTAGG-GACTT-CTTCACCTTTAGTTTACCC
1 GTCGGCTTTGACC-TCGGAGACTTCCTT-ACCTTTAGTCTGCCT
* * * * *
155214 ATCGGCTTTGA-CTCTGGAGACTTTCTTCCCTTTAGTTTACCT
1 GTCGGCTTTGACCTC-GGAGACTTCCTTACCTTTAGTCTGCCT
* * * * *
155256 ATCAGCTTTGACCTTGGGGAATT-CTTCACCCTTT-GTCTGCCT
1 GTCGGCTTTGACCTCGGAGACTTCCTT-A-CCTTTAGTCTGCCT
* * *
155298 GTCAGCTTTGACCTTGGAGACATT--TTCACCTTTTA-TCTACCT
1 GTCGGCTTTGACCTCGGAGAC-TTCCTT-ACC-TTTAGTCTGCCT
** * ** * ** *
155340 GTTAGCCTAAACC-CTTGAGACTT--AGA-CTTTCAGCCTGCCT
1 GTCGGCTTTGACCTC-GGAGACTTCCTTACCTTT-AGTCTGCCT
* * * *
155380 GTCGGCTCTAACC-CTGGAAACTTCCTTACCTTTAGTCTCCCT
1 GTCGGCTTTGACCTC-GGAGACTTCCTTACCTTTAGTCTGCCT
* * * *
155422 ATTGGCTTTGACC-CTGGAGACTTTCTTA-CTATTAGTCTGCTT
1 GTCGGCTTTGACCTC-GGAGACTTCCTTACCT-TTAGTCTGCCT
* * *
155464 GTCGGCTTTGACCAT-GAAGACTT-CTTGAACATTAGAT-TGCCT
1 GTCGGCTTTGACC-TCGGAGACTTCCTT-ACCTTTAG-TCTGCCT
* ** * * * * *
155506 CTCAACTTTGACTTTGGATACTTCTTTACCTTTAGTCTGCCC
1 GTCGGCTTTGACCTCGGAGACTTCCTTACCTTTAGTCTGCCT
* * * * * *
155548 ATCGGCTTTGACCTTGGAAACTTCCTTACCTTTAGTTTACCC
1 GTCGGCTTTGACCTCGGAGACTTCCTTACCTTTAGTCTGCCT
* * * *
155590 GTCGGCTTTGACCAT-GGCGACATCTTTACCTTTAGTCTGCTT
1 GTCGGCTTTGACC-TCGGAGACTTCCTTACCTTTAGTCTGCCT
* * ** * *
155632 GTCAGCTTTGACTTTAGAGACTTCCTTGCCTTTAGTCTGCCC
1 GTCGGCTTTGACCTCGGAGACTTCCTTACCTTTAGTCTGCCT
**
155674 GTCGGCTTTGACCTTAGAGACTTCCTTACCTTTAGT-TAG-CT
1 GTCGGCTTTGACCTCGGAGACTTCCTTACCTTTAGTCT-GCCT
* * * ** *
155715 CGTCGGTTTTGACACAT--AAGATTTTTTTGA-CTTTAGTCTACCT
1 -GTCGGCTTTGAC-C-TCGGAGACTTCCTT-ACCTTTAGTCTGCCT
** * * *
155758 GTCGGCTTTGACCTTTGA-AGCTTATTGACTTACCTTTAGTTTGCCC
1 GTCGGCTTTGACCTCGGAGA-C---TT-CCTTACCTTTAGTCTGCCT
* * *
155804 GTCGGCTTTGACACT-AGAGACTTCCTTACCTTTTGTCTACCT
1 GTCGGCTTTGAC-CTCGGAGACTTCCTTACCTTTAGTCTGCCT
155846 G
1 G
155847 ACAACTTTGA
Statistics
Matches: 705, Mismatches: 165, Indels: 112
0.72 0.17 0.11
Matches are distributed among these distances:
38 3 0.00
39 2 0.00
40 33 0.05
41 45 0.06
42 551 0.78
43 37 0.05
44 1 0.00
45 3 0.00
46 27 0.04
47 3 0.00
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (42 bp):
GTCGGCTTTGACCTCGGAGACTTCCTTACCTTTAGTCTGCCT
Found at i:156004 original size:42 final size:42
Alignment explanation
Indices: 155945--156458 Score: 308
Period size: 42 Copynumber: 12.1 Consensus size: 42
155935 TTCTTTACCA
* * *
155945 TTAGTTTGCCTATCGGCTTTAACCCTAGTGACTTCCTTACTT
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACTT
* * *
155987 TTAGTTTGCTTGTCGGCTTTGACCCTTGAGACTT-CTTGGCTT
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTT-ACTT
* * * *
156029 TTAGTCTGCCTGTCGGGTTTGACCCTAGAAAACTTCCTTAC-C
1 TTAGTTTGCCTGTCGGCTTTGACCCTAG-AGACTTCCTTACTT
* * * * * * *
156071 TTAGTTTGCTTGTCGACTTTGACCTTGGAGACTACTTTACCT
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACTT
* * * * * * *
156113 TTAGTCTACCCGTCGGCTTTGACCGTATAGACATT-TTTACCT
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGAC-TTCCTTACTT
* * * * * * **
156155 TTGGTCTGCCTATCAGCTTTGACCATGGAGACTTCCTTACCC
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACTT
* * * *
156197 TTAGTTTGCCCGTCGGCTTTGACCTTAGAGACTTCCTTGCCT
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACTT
* * ** * ** *
156239 TTAGTTTG-CTCATCAGCTTTGACATTATAAGACTTTTTTACCT
1 TTAGTTTGCCT-GTCGGCTTTGACCCTA-GAGACTTCCTTACTT
* * * * *
156282 TTAGTTCGCCTATCGGCTTTGACCTTGGAGACTT-CTTGACCT
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTT-ACTT
* * * * *
156324 TTAGTCT-CCCGATCAGG-TTTAACCCTAGAGACTTCTTTACCT
1 TTAGTTTGCCTG-TC-GGCTTTGACCCTAGAGACTTCCTTACTT
*
156366 TTAGTTTGCTCAT-T-GGCTTTGACCCTAGAGACTTCTTTACTTACCT
1 TTAGTTTGC-C-TGTCGGCTTTGACCCTAGAGACTTC----CTTACTT
* * * *
156412 TTAGTCTACCTGTCGGCTTTGACACTAGAGACTTCCTTACCT
1 TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACTT
156454 TTAGT
1 TTAGT
156459 CTGCTTGACA
Statistics
Matches: 369, Mismatches: 80, Indels: 46
0.75 0.16 0.09
Matches are distributed among these distances:
41 21 0.06
42 262 0.71
43 44 0.12
44 7 0.02
45 2 0.01
46 33 0.09
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (42 bp):
TTAGTTTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACTT
Found at i:156240 original size:84 final size:84
Alignment explanation
Indices: 155920--156458 Score: 390
Period size: 84 Copynumber: 6.4 Consensus size: 84
155910 TCCTTACTTT
* * * * * *
155920 TTTGACCTTGGAGAGTTCTTTACCATTAGTTTGCCTATCGGCTTTAACCCTAGTGACTTCCTTAC
1 TTTGACCATGGAGACTTCTTTACCTTTAGTTTGCCCATCGGCTTTGACCCTAGAGACTTCCTTAC
* * * * *
155985 TTTTAGTTTGCTTGTCGGC
66 CTTTAGTCTGCCTATCAGC
* * ** * * ** * *
156004 TTTGACCCTTGAGACTTCTTGGCTTTTAGTCTGCCTGTCGGGTTTGACCCTAGAAAACTTCCTTA
1 TTTGACCATGGAGACTTCTTTACCTTTAGTTTGCCCATCGGCTTTGACCCTAG-AGACTTCCTTA
* * *
156069 CC-TTAGTTTGCTTGTC-GAC
65 CCTTTAGTCTGCCTATCAG-C
* * * * * * * *
156088 TTTGACCTTGGAGACTACTTTACCTTTAGTCTACCCGTCGGCTTTGACCGTATAGACATT-TTTA
1 TTTGACCATGGAGACTTCTTTACCTTTAGTTTGCCCATCGGCTTTGACCCTAGAGAC-TTCCTTA
*
156152 CCTTTGGTCTGCCTATCAGC
65 CCTTTAGTCTGCCTATCAGC
* * * * *
156172 TTTGACCATGGAGACTTCCTTACCCTTAGTTTGCCCGTCGGCTTTGACCTTAGAGACTTCCTTGC
1 TTTGACCATGGAGACTTCTTTACCTTTAGTTTGCCCATCGGCTTTGACCCTAGAGACTTCCTTAC
*
156237 CTTTAGTTTG-CTCATCAGC
66 CTTTAGTCTGCCT-ATCAGC
** * * * * *
156256 TTTGA-CATTATAAGACTTTTTTACCTTTAGTTCGCCTATCGGCTTTGACCTTGGAGACTT-CTT
1 TTTGACCA-T-GGAGACTTCTTTACCTTTAGTTTGCCCATCGGCTTTGACCCTAGAGACTTCCTT
* * *
156319 GACCTTTAGTCTCCCGATCAGG
64 -ACCTTTAGTCTGCCTATCAGC
* * * * *
156341 TTTAACCCTAGAGACTTCTTTACCTTTAGTTTGCTCATTGGCTTTGACCCTAGAGACTTCTTTAC
1 TTTGACCATGGAGACTTCTTTACCTTTAGTTTGCCCATCGGCTTTGACCCTAGAGACTTC----C
* * *
156406 TTACCTTTAGTCTACCTGTCGGC
62 TTACCTTTAGTCTGCCTATCAGC
* *
156429 TTTGA-CACTAGAGACTTCCTTACCTTTAGT
1 TTTGACCA-TGGAGACTTCTTTACCTTTAGT
156459 CTGCTTGACA
Statistics
Matches: 361, Mismatches: 76, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
83 15 0.04
84 228 0.63
85 71 0.20
86 2 0.01
87 1 0.00
88 41 0.11
89 3 0.01
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (84 bp):
TTTGACCATGGAGACTTCTTTACCTTTAGTTTGCCCATCGGCTTTGACCCTAGAGACTTCCTTAC
CTTTAGTCTGCCTATCAGC
Found at i:156353 original size:127 final size:126
Alignment explanation
Indices: 155920--156462 Score: 355
Period size: 126 Copynumber: 4.3 Consensus size: 126
155910 TCCTTACTTT
* * * * * ** *
155920 TTTGACCTTGGAGAGTTCTTTACCATTAGTTTGCCTATCGGCTTTAACCCTAGTGACTTCCTTAC
1 TTTGACCATGGAGACTTCCTTACCCTTAGTCTGCCCGTCGGCTTTAACCCTAGAGACTTCCTTAC
* ** * ** ** * * * * *
155985 TTTTAGTTTGCTTGTCGGCTTTGACCCT-TGAGAC-TTCTTGGCTTTTAGTCTGCCTGTCGGG
66 CTTTAGTTTGCTCATCAGCTTTGACAGTAT-AGACATT-TTTACCTTTGGTCTGCCTATCAGC
* * * * ** * * * * * *
156046 TTTGACCCTAGAAAACTTCCTTA-CCTTAGTTTGCTTGTCGACTTTGACCTTGGAGACTACTTTA
1 TTTGACCAT-GGAGACTTCCTTACCCTTAGTCTGCCCGTCGGCTTTAACCCTAGAGACTTCCTTA
* * * * * *
156110 CCTTTAGTCTACCCGTCGGCTTTGACCGTATAGACATTTTTACCTTTGGTCTGCCTATCAGC
65 CCTTTAGTTTGCTCATCAGCTTTGACAGTATAGACATTTTTACCTTTGGTCTGCCTATCAGC
* * * *
156172 TTTGACCATGGAGACTTCCTTACCCTTAGTTTGCCCGTCGGCTTTGACCTTAGAGACTTCCTTGC
1 TTTGACCATGGAGACTTCCTTACCCTTAGTCTGCCCGTCGGCTTTAACCCTAGAGACTTCCTTAC
* * * *
156237 CTTTAGTTTGCTCATCAGCTTTGACATTATAAGACTTTTTTACCTTTAGT-TCGCCTATCGGC
66 CTTTAGTTTGCTCATCAGCTTTGACAGTAT-AGACATTTTTACCTTTGGTCT-GCCTATCAGC
* * *
156299 TTTGACCTTGGAGACTT-CTTGACCTTTAGTCT-CCCGATCAGG-TTTAACCCTAGAGACTTCTT
1 TTTGACCATGGAGACTTCCTT-ACCCTTAGTCTGCCCG-TC-GGCTTTAACCCTAGAGACTTCCT
** ** * * * * *
156361 TACCTTTAGTTTGCTCATTGGCTTTGACCCTAGAGACTTCTTTACTTACCTTTAGTCTACCTGTC
63 TACCTTTAGTTTGCTCATCAGCTTTGACAGTATAGAC--ATTT--TTACCTTTGGTCTGCCTATC
*
156426 GGC
124 AGC
* *
156429 TTTGA-CACTAGAGACTTCCTTACCTTTAGTCTGC
1 TTTGACCA-TGGAGACTTCCTTACCCTTAGTCTGC
156463 TTGACAACTT
Statistics
Matches: 335, Mismatches: 65, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
125 11 0.03
126 161 0.48
127 109 0.33
128 5 0.01
129 1 0.00
130 43 0.13
131 5 0.01
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (126 bp):
TTTGACCATGGAGACTTCCTTACCCTTAGTCTGCCCGTCGGCTTTAACCCTAGAGACTTCCTTAC
CTTTAGTTTGCTCATCAGCTTTGACAGTATAGACATTTTTACCTTTGGTCTGCCTATCAGC
Found at i:156474 original size:42 final size:42
Alignment explanation
Indices: 156382--156490 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 42
156372 TGCTCATTGG
* * **
156382 CTTTGACCCTAGAGACTTCTTTACTTACCTTTAGTCTACCTGTCGG
1 CTTTGACACTAGAGACTTC----CTTACCTTTAGTCTACCTGACAA
* *
156428 CTTTGACACTAGAGACTTCCTTACCTTTAGTCTGCTTGACAA
1 CTTTGACACTAGAGACTTCCTTACCTTTAGTCTACCTGACAA
* *
156470 CTTTGACATTATAGACTTCCT
1 CTTTGACACTAGAGACTTCCT
156491 AATTTTTGGT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 37 0.67
46 18 0.33
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.39
Consensus pattern (42 bp):
CTTTGACACTAGAGACTTCCTTACCTTTAGTCTACCTGACAA
Found at i:156564 original size:619 final size:618
Alignment explanation
Indices: 155507--156798 Score: 1617
Period size: 619 Copynumber: 2.1 Consensus size: 618
155497 AGATTGCCTC
** * * * * *
155507 TCAACTTTGACTTTGGATACTTCTTTACCTTTAGTCTGCCCATCGGCTTTGACCTTGGAAACTTC
1 TCAACTTTGACCCTAGAGACTTATTTACCTTTAGTCTGCCTATCGGCTTTGACCATGGAAACTTC
* * * * **
155572 CTTACCTTTAGTTTACCCGTCGGCTTTGACCATGGCGACATCTTTACCTTTAGTCTGCTTGTCAG
66 CTTACCCTTAGTTTACCCGTCGGCTTTGACCATAGAGACATCCTTACCTTTAGTCTGCTCATCAG
* *
155637 CTTTGACTTTAGAGACTTCCTTGCCTTTAGTCTGCCCGTCGGCTTTGACCTTAGAGACTTCCTTA
131 CTTTGACTTTAGAGACTTCCTTACCTTTAGTCTGCCCATCGGCTTTGACCTTAGAGACTTCCTTA
* * * *
155702 CCTTTAGTTAGCTCGTCGGTTTTGACACATAAGATTTTTTTGACTTTAGTCTACCTGTCGGCTTT
196 CCTTTAGTTA-CCCGTCGGTTTTAACACATAAGACTTCTTTGACTTTAGTCTACCTGTCGGCTTT
* * * *
155767 GACCTTTGAAGCTTATTGACTTACCTTTAGTTTGCCCGTCGGCTTTGACACTAGAGACTTCCTTA
260 GACCCTAGAAGCTTATTGACTTACCTTTAGTCTACCCGTCGGCTTTGACACTAGAGACTTCCTTA
* * ** *
155832 CCTTTTGTCTACCTGACAACTTTGACATTAGAGACTTCCTGATTTTTGGTTTGCTTGTCGGCTTC
325 CCTTTAGTCTACCTGACAACTTTGACATTAGAGACTTCCTAATTTTTGGTCAGCTTATCGGCTTC
* *
155897 GACCCTTGAGATTTCCTTACTTTTTTGACCTTGGAGAGTTCTTTACCATTAGTTTGC-CTATCGG
390 GACCCTTGAGACTTCCTTACTTTTTTGACCTTGGAGAGTTCCTTACCATTAGTTTGCTC-ATCGG
* * * * * * *
155961 CTTTAACCCTAGTGACTTCCTTA-CTTTTAGTTTGCTTGTCGGCTTTGACCCTTGAGACTTCTTG
454 CTTTAACCCTACTGACTTCCTTATC-TTTAGTCTGCTTGTCAGCTTTGACCATAGAGACTTCCTA
* *
156025 GCTTTTAGTCTGCCTGTCGGGTTTGACCCTAGAAAACTTCCTTACC-TTAGTTTGCTTGTCGACT
518 ACTTTTAGTCTGCCTGTCGGCTTTGACCCTAGAAAACTTCCTTACCTTTAGTTTGCTTGTCGACT
** * *
156089 TTGA-CCTTGGAGACTACTTTACCTTTAGTCTACCCG
583 TTGATCC-AAGAGACTACCTTACCTTTAGTCTACCCA
** * * * * *
156125 TCGGCTTTGACCGTATAGACATT-TTTACCTTTGGTCTGCCTATCAGCTTTGACCATGGAGACTT
1 TCAACTTTGACCCTAGAGAC-TTATTTACCTTTAGTCTGCCTATCGGCTTTGACCATGGAAACTT
* * * * *
156189 CCTTACCCTTAGTTTGCCCGTCGGCTTTGACCTTAGAGACTTCCTTGCCTTTAGTTTGCTCATCA
65 CCTTACCCTTAGTTTACCCGTCGGCTTTGACCATAGAGACATCCTTACCTTTAGTCTGCTCATCA
** * *
156254 GCTTTGACATTATA-AGACTTTTTTACCTTTAGT-TCGCCTATCGGCTTTGACCTTGGAGACTT-
130 GCTTTGAC-TT-TAGAGACTTCCTTACCTTTAGTCT-GCCCATCGGCTTTGACCTTAGAGACTTC
* * *
156316 CTTGACCTTTAGTCT-CCCGATCAGG-TTTAAC-CCTAGAGACTTCTTT-ACCTTTAGTTTGCTC
192 CTT-ACCTTTAGT-TACCCG-TC-GGTTTTAACACATA-AGACTTCTTTGA-CTTTAGTCTAC-C
* * *
156377 AT-T-GGCTTTGACCCTAG-AGACTTCTTTACTTACCTTTAGTCTACCTGTCGGCTTTGACACTA
250 -TGTCGGCTTTGACCCTAGAAG-CTTATTGACTTACCTTTAGTCTACCCGTCGGCTTTGACACTA
* * *
156439 GAGACTTCCTTACCTTTAGTCTGCTTGACAACTTTGACATTATAGACTTCCTAATTTTTGGTCAG
313 GAGACTTCCTTACCTTTAGTCTACCTGACAACTTTGACATTAGAGACTTCCTAATTTTTGGTCAG
156504 CTTATCGGCTTCGACCCTTGAGACTT-CTTCACTTTTTTGACCTTGGAGAGTTCCTTACCATTAG
378 CTTATCGGCTTCGACCCTTGAGACTTCCTT-ACTTTTTTGACCTTGGAGAGTTCCTTACCATTAG
* * *
156568 TTTGCTCGTCGTCTTTGACCCTACTGACTTCCTTATCTTTAGTCTGCTTGTCAGCTTTGACCATA
442 TTTGCTCATCGGCTTTAACCCTACTGACTTCCTTATCTTTAGTCTGCTTGTCAGCTTTGACCATA
** *
156633 GAGACTTCCTAACTTTTAGTCTGTTTGTCGGCTTTGACCCTAGAAAACTTCCTTGCCTTTAGTTT
507 GAGACTTCCTAACTTTTAGTCTGCCTGTCGGCTTTGACCCTAGAAAACTTCCTTACCTTTAGTTT
*
156698 GCTTGTCGACTTTGATCCAAGAGACTACCTTACCTTTAGTCTACCTA
572 GCTTGTCGACTTTGATCCAAGAGACTACCTTACCTTTAGTCTACCCA
* *
156745 TCAACTTTGACCCTAGAGACTTACTTACCTTTAGTCTGCCTATCGGTTTTGACC
1 TCAACTTTGACCCTAGAGACTTATTTACCTTTAGTCTGCCTATCGGCTTTGACC
156799 CTAGTTCCTT
Statistics
Matches: 574, Mismatches: 81, Indels: 36
0.83 0.12 0.05
Matches are distributed among these distances:
618 127 0.22
619 346 0.60
620 98 0.17
621 3 0.01
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (618 bp):
TCAACTTTGACCCTAGAGACTTATTTACCTTTAGTCTGCCTATCGGCTTTGACCATGGAAACTTC
CTTACCCTTAGTTTACCCGTCGGCTTTGACCATAGAGACATCCTTACCTTTAGTCTGCTCATCAG
CTTTGACTTTAGAGACTTCCTTACCTTTAGTCTGCCCATCGGCTTTGACCTTAGAGACTTCCTTA
CCTTTAGTTACCCGTCGGTTTTAACACATAAGACTTCTTTGACTTTAGTCTACCTGTCGGCTTTG
ACCCTAGAAGCTTATTGACTTACCTTTAGTCTACCCGTCGGCTTTGACACTAGAGACTTCCTTAC
CTTTAGTCTACCTGACAACTTTGACATTAGAGACTTCCTAATTTTTGGTCAGCTTATCGGCTTCG
ACCCTTGAGACTTCCTTACTTTTTTGACCTTGGAGAGTTCCTTACCATTAGTTTGCTCATCGGCT
TTAACCCTACTGACTTCCTTATCTTTAGTCTGCTTGTCAGCTTTGACCATAGAGACTTCCTAACT
TTTAGTCTGCCTGTCGGCTTTGACCCTAGAAAACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
ATCCAAGAGACTACCTTACCTTTAGTCTACCCA
Found at i:156600 original size:42 final size:41
Alignment explanation
Indices: 156554--158170 Score: 372
Period size: 42 Copynumber: 38.4 Consensus size: 41
156544 CCTTGGAGAG
* * * **
156554 TTCCTTACCATTAGTTTGCTCGTCGTCTTTGACCCTACTGAC
1 TTCCTTACCTTTAGTCTGCTTGTCG-CTTTGACCCTAAAGAC
* * *
156596 TTCCTTATCTTTAGTCTGCTTGTCAGCTTTGACCATAGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * *
156638 TTCCTAACTTTTAGTCTGTTTGTCGGCTTTGACCCTAGAAAAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTA-AAGAC
* * *
156681 TTCCTTGCCTTTAGTTTGCTTGTCGACTTTGATCC-AAGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTCG-CTTTGACCCTAA-AGAC
* * * * * *
156723 TACCTTACCTTTAGTCTACCTATCAACTTTGACCCTAGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * * ****
156765 TTACTTACCTTTAGTCTGCCTATCGGTTTTGACCCTAGTTCC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * ** * **
156807 TT-TTGTACCTTTAGTCTACCGGTCAGCTTTGACCTTGGAGA-
1 TTCCT-TACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
** * * * * * * *
156848 TTTTTTCACTTTTTGTCTACTTGTCGGATTTAACACTAGAGAC
1 TTCCTT-ACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * * *
156891 TTTCTCACCTTTAGTTTGCCTGCCGGCTTTGACCCTAGAA-AC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTA-AAGAC
** *
156933 TTTTTTACCTTTAGTCTGGC-TGTCAGCTTTGACCCTGGAA-AC
1 TTCCTTACCTTTAGTCT-GCTTGTC-GCTTTGACCCT-AAAGAC
* * * * * * **
156975 TT-TTTGACCTTTATTCTACCTGTCGACTTTCACCTTGGAGAC
1 TTCCTT-ACCTTTAGTCTGCTTGTCG-CTTTGACCCTAAAGAC
** * *** *
157017 TTCCTTAGATTTAGTCTACCCATCAGCTTTGACCCTAGGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTA-AAGAC
* * * ** *
157060 ATCCTTACCTTTATTCTACCCGTCAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * *** * * *
157102 TTCTTTACCTTTAGTCATACCCATCGATTTTGACCCCAGAGAC
1 TTCCTTACCTTTAGTC-TGCTTGTCG-CTTTGACCCTAAAGAC
* * ** * *
157145 TTTCTTACCTTTAGTCTACCCGTCGGTATTGACCCTAGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTCGCT-TTGACCCTAAAGAC
* * *
157187 TTCCTTGCCTTTAGTCTGTCCGTTG--GCTTTAACCCTAATGAC
1 TTCCTTACCTTTAGTCTG--C-TTGTCGCTTTGACCCTAAAGAC
* * **
157229 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * * * ** **
157271 TTCTTTACCTTTAGTCTACTAGTTGGCTTTAACATTGGAGAC
1 TTCCTTACCTTTAGTCTGCTTG-TCGCTTTGACCCTAAAGAC
* *** **
157313 TTCTTTACCTTTAGTCTGCCCCTCGGCTTTGTA-CCTGGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTG-ACCCTAAAGAC
* * *** * * ***
157355 TTCTTTACCTTTAGTCTACCCATCGACTTTAACCTTGGGGAC
1 TTCCTTACCTTTAGTCTGCTTGTCG-CTTTGACCCTAAAGAC
* * *
157397 TT-CTTCACCTTTAATCTAGC-CGTCAGCTTTGACCCTAGAGAC
1 TTCCTT-ACCTTTAGTCT-GCTTGTC-GCTTTGACCCTAAAGAC
* * * * * * *** *
157439 TTTCTTACCTTTAGTCTACCTATCGGCTATGACCTTGTGGAA
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * * **
157481 TT-CTTCACCGTTT-GTCTGCCTGTCAACCTTGACCTTGGAGA-
1 TTCCTT-ACC-TTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * * * ** **
157522 TAT-TTTCACCTTTTGTCTGCCTGTTGGCCTACACCCTTGAGAC
1 T-TCCTT-ACCTTTAGTCTGCTTG-TCGCTTTGACCCTAAAGAC
* * * * * * *
157565 TTGC-GA-CTTTCAGCCTGCTTGTCGGTTCTAACCTTGGAA-AC
1 TTCCTTACCTTT-AGTCTGCTTGTCGCTT-TGACCCT-AAAGAC
* * * *
157606 TTCCTTACCTTTAGTCTCCTTATCAGCTTTTACCCTAGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * *
157648 TTCCTTACCATTAGTCTGCTTGTCGGCTTTGACCATGAAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * *** **
157690 TT-CTTGA-ATATTAGTTTGCCTGTCGGCTTTGATTTTGGAGAC
1 TTCCTT-ACCT-TTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
*** * * * * **
157732 TAATTTACCTTTAGTCTACATATCAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * ** * **
157774 TTCCTTACCTTTAGCCTACCCGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * ** *
157816 ATCTTTACCTTTAGTCTGCCTGTCAGCTTTGACTTTGGAA-AC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCT-AAAGAC
* * * *
157858 TTCCTTGCCTTTAGTCTGCCTT-TGGCTTTGACCTTACAGAC
1 TTCCTTACCTTTAGTCTG-CTTGTCGCTTTGACCCTAAAGAC
** * * *
157899 TTCCTTACCTTTAGTCTGCCCGTCGATTTTGACAC-AGAAGAT
1 TTCCTTACCTTTAGTCTGCTTGTCG-CTTTGACCCTA-AAGAC
* * * * * **
157941 TTCTTTAACTTTAGTCTACCTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * ** * * *
157983 TTCCTGACCTTTAGTTTGCCAGTCAGCTTTGACCTTAGAGAT
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * *
158025 TTCTTTACCTTTAGTCTACTCGTCGGCTTTGACCTTAAAGAC
1 TTCCTTACCTTTAGTCTGCTTGTC-GCTTTGACCCTAAAGAC
* * * *
158067 ATCCTTACCTTTAGTCTACCTAT-TAGCTTTGA-CTTAAGAGAC
1 TTCCTTACCTTTAGTCT-GCT-TGTCGCTTTGACCCTAA-AGAC
* * * *
158109 TTCCTAACTTACCTTTAGTCTGCCTGCTGGCTTTGACACT-AGGCAC
1 TT-C---CTTACCTTTAGTCTGCTTG-TCGCTTTGACCCTAAAG-AC
158155 TTCCTTACCTTTAGTC
1 TTCCTTACCTTTAGTC
158171 CGCCTAATAA
Statistics
Matches: 1198, Mismatches: 301, Indels: 152
0.73 0.18 0.09
Matches are distributed among these distances:
39 2 0.00
40 10 0.01
41 84 0.07
42 921 0.77
43 147 0.12
44 2 0.00
45 4 0.00
46 27 0.02
47 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (41 bp):
TTCCTTACCTTTAGTCTGCTTGTCGCTTTGACCCTAAAGAC
Found at i:156780 original size:127 final size:127
Alignment explanation
Indices: 156554--156802 Score: 300
Period size: 127 Copynumber: 2.0 Consensus size: 127
156544 CCTTGGAGAG
* * * * * * * *
156554 TTCCTTACCATTAGTTTGCTCGTCGTCTTTGACCCTACTGACTTCCTTATCTTTAGTCTGCTTGT
1 TTCCTTACCATTAGTTTGCTCGTCGACTTTGACCCAACAGACTACCTTACCTTTAGTCTACCTAT
* * * ** *
156619 CAGCTTTGACCATAGAGACTTCCTAACTTTTAGTCTGTTTGTCGGCTTTGACCCTAGAAAAC
66 CAACTTTGACCATAGAGACTTACTAACCTTTAGTCTGCCTATCGGCTTTGACCCTAGAAAAC
* * * * *
156681 TTCCTTGCCTTTAGTTTGCTTGTCGACTTTGATCCAAGAGACTACCTTACCTTTAGTCTACCTAT
1 TTCCTTACCATTAGTTTGCTCGTCGACTTTGACCCAACAGACTACCTTACCTTTAGTCTACCTAT
* * *
156746 CAACTTTGACCCTAGAGACTTACTTACCTTTAGTCTGCCTATCGGTTTTGACCCTAG
66 CAACTTTGACCATAGAGACTTACTAACCTTTAGTCTGCCTATCGGCTTTGACCCTAG
156803 TTCCTTTTGT
Statistics
Matches: 100, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
127 100 1.00
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (127 bp):
TTCCTTACCATTAGTTTGCTCGTCGACTTTGACCCAACAGACTACCTTACCTTTAGTCTACCTAT
CAACTTTGACCATAGAGACTTACTAACCTTTAGTCTGCCTATCGGCTTTGACCCTAGAAAAC
Found at i:157018 original size:619 final size:618
Alignment explanation
Indices: 155738--157104 Score: 1530
Period size: 619 Copynumber: 2.2 Consensus size: 618
155728 ACATAAGATT
* * * * *
155738 TTTTTGA-CTTTAGTCTACCTGTCGGCTTTGACCTTTGA-AGCTTATTGACTTACCTTTAGTTTG
1 TTTTTGACCTTTATTCTACCTGTCGGCTTTGACCTTAGAGA-CTTCTT-ACTTACCTTTAGTCTA
*
155801 CCCGTCGGCTTTGACACTAGAGACTTCCTTACCTTTTGTCTACCTGACAACTTTGACATTAGAGA
64 CCCGTCGGCTTTGACACTAGAGACTTCCTTACCTTTAGTCTACCTGACAACTTTGACATTAGAGA
* ** * *
155866 CTTCCTGATTTTTGGTTTGCTTGTCGGCTTCGACCCTTGAGATTTCCTTACTTTTTTGACCTTGG
129 CTTCCTAATTTTTGGTCAGCTTATCGGCTTCGACCCTTGAGACTTCCTTACTTTTTTGACCTTGG
* * *
155931 AGAGTTCTTTACCATTAGTTTGCCTATCGGCTTTAACCCTAGTGACTTCCTTACTTTTAGTTTGC
194 AGAGTTCCTTACCATTAGTTTGCCTATCGGCTTTAACCCTACTGACTTCCTTACTTTTAGTCTGC
* * * * ** *
155996 TTGTCGGCTTTGACCCTTGAGACTTCTTGGCTTTTAGTCTGCCTGTCGGGTTTGACCCTAGAAAA
259 TTGTCAGCTTTGACCATAGAGACTTCCTAACTTTTAGTCTGCCTGTCGGCTTTGACCCTAGAAAA
** * *
156061 CTTCCTTACCTTAGTTTGCTTGTCGACTTTGACCTTGGAGACTACTTTACCTTTAGTCTACCCGT
324 CTTCCTTACCTTAGTTTGCTTGTCGACTTTGACCTAAGAGACTACCTTACCTTTAGTCTACCCAT
** * * * * *
156126 CGGCTTTGACCGTATAGACATTTTTACCTTTGGTCTGCCTATCAGCTTTGACCATGGAGACTTCC
389 CAACTTTGACCCTAGAGACATTCTTACCTTTAGTCTGCCTATCAGCTTTGACCATAGAGACTTCC
* * * * * *
156191 TTACCCTTAGTTTGCCCGTCGGCTTTGACCTTAGAGACTTCCTTGCCTTTAGTTTGCTCATCAGC
454 TTACCCTTAGTCTACCCGTCAGCTTTGACCTTAGAGACTTCCTTGCCTTTAGTCTACTCATCAGA
* * * * * * * *
156256 TTTGACATTATAAGACTTTTTTACCTTTAGTTCGCCTATCGGCTTTGACCTTGGAGACTTCTTGA
519 TTTAACACTATAAGACTTTCTCACCTTTAGTTCGCCTACCGGCTTTGACCCTAGAAACTTCTTGA
* *
156321 CCTTTAGTCTCCCGATCAGGTTTAACCCTAGAGAC
584 CCTTTAGTCTCCCGATCAGCTTTAACCCTAGAAAC
* *
156356 TTCTTT-ACCTTTAGTTTGCT-CAT-T-GGCTTTGACCCTAGAGACTTCTTTACTTACCTTTAGT
1 TT-TTTGACCTTTA--TT-CTACCTGTCGGCTTTGACCTTAGAGACTTC-TTACTTACCTTTAGT
* * * *
156417 CTACCTGTCGGCTTTGACACTAGAGACTTCCTTACCTTTAGTCTGCTTGACAACTTTGACATTAT
61 CTACCCGTCGGCTTTGACACTAGAGACTTCCTTACCTTTAGTCTACCTGACAACTTTGACATTAG
156482 AGACTTCCTAATTTTTGGTCAGCTTATCGGCTTCGACCCTTGAGACTT-CTTCACTTTTTTGACC
126 AGACTTCCTAATTTTTGGTCAGCTTATCGGCTTCGACCCTTGAGACTTCCTT-ACTTTTTTGACC
* * *
156546 TTGGAGAGTTCCTTACCATTAGTTTG-CTCGTCGTCTTTGACCCTACTGACTTCCTTA-TCTTTA
190 TTGGAGAGTTCCTTACCATTAGTTTGCCT-ATCGGCTTTAACCCTACTGACTTCCTTACT-TTTA
**
156609 GTCTGCTTGTCAGCTTTGACCATAGAGACTTCCTAACTTTTAGTCTGTTTGTCGGCTTTGACCCT
253 GTCTGCTTGTCAGCTTTGACCATAGAGACTTCCTAACTTTTAGTCTGCCTGTCGGCTTTGACCCT
*
156674 AGAAAACTTCCTTGCCTTTAGTTTGCTTGTCGACTTTGATCC-AAGAGACTACCTTACCTTTAGT
318 AGAAAACTTCCTTACC-TTAGTTTGCTTGTCGACTTTGA-CCTAAGAGACTACCTTACCTTTAGT
* * * *
156738 CTACCTATCAACTTTGACCCTAGAGAC-TTACTTACCTTTAGTCTGCCTATCGGTTTTGACCCTA
381 CTACCCATCAACTTTGACCCTAGAGACATT-CTTACCTTTAGTCTGCCTATCAGCTTTGACCATA
*** * * * * * * *
156802 GTTCCTT-TTGTACCTTTAGTCTACCGGTCAGCTTTGACCTTGGAGA-TT-TTTTCACTTTTTGT
445 GAGACTTCCT-TACCCTTAGTCTACCCGTCAGCTTTGACCTTAGAGACTTCCTTGC-C-TTTAGT
** * * * *
156864 CTACTTGTCGGATTTAACACTA-GAGACTTTCTCACCTTTAGTTTGCCTGCCGGCTTTGACCCTA
507 CTACTCATCAGATTTAACACTATAAGACTTTCTCACCTTTAGTTCGCCTACCGGCTTTGACCCTA
* * * * * *
156928 GAAACTTTTTTACCTTTAGTCTGGCTG-TCAGCTTTGACCCTGGAAAC
572 GAAACTTCTTGACCTTTAGTCT-CCCGATCAGCTTTAACCCTAGAAAC
* * * **
156975 TTTTTGACCTTTATTCTACCTGTCGACTTTCACCTTGGAGACTTC---CTTAGATTTAGTCTACC
1 TTTTTGACCTTTATTCTACCTGTCGGCTTTGACCTTAGAGACTTCTTACTTACCTTTAGTCTACC
* * * * * * * * **
157037 CATCAGCTTTGACCCTAGGAGACATCCTTACCTTTATTCTACCCGTCAGCTTTGACCCTAGAGAC
66 CGTCGGCTTTGACACTA-GAGACTTCCTTACCTTTAGTCTACCTGACAACTTTGACATTAGAGAC
157102 TTC
130 TTC
157105 TTTACCTTTA
Statistics
Matches: 620, Mismatches: 107, Indels: 46
0.80 0.14 0.06
Matches are distributed among these distances:
615 28 0.05
616 42 0.07
617 4 0.01
618 16 0.03
619 374 0.60
620 149 0.24
621 5 0.01
622 2 0.00
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (618 bp):
TTTTTGACCTTTATTCTACCTGTCGGCTTTGACCTTAGAGACTTCTTACTTACCTTTAGTCTACC
CGTCGGCTTTGACACTAGAGACTTCCTTACCTTTAGTCTACCTGACAACTTTGACATTAGAGACT
TCCTAATTTTTGGTCAGCTTATCGGCTTCGACCCTTGAGACTTCCTTACTTTTTTGACCTTGGAG
AGTTCCTTACCATTAGTTTGCCTATCGGCTTTAACCCTACTGACTTCCTTACTTTTAGTCTGCTT
GTCAGCTTTGACCATAGAGACTTCCTAACTTTTAGTCTGCCTGTCGGCTTTGACCCTAGAAAACT
TCCTTACCTTAGTTTGCTTGTCGACTTTGACCTAAGAGACTACCTTACCTTTAGTCTACCCATCA
ACTTTGACCCTAGAGACATTCTTACCTTTAGTCTGCCTATCAGCTTTGACCATAGAGACTTCCTT
ACCCTTAGTCTACCCGTCAGCTTTGACCTTAGAGACTTCCTTGCCTTTAGTCTACTCATCAGATT
TAACACTATAAGACTTTCTCACCTTTAGTTCGCCTACCGGCTTTGACCCTAGAAACTTCTTGACC
TTTAGTCTCCCGATCAGCTTTAACCCTAGAAAC
Found at i:157261 original size:84 final size:82
Alignment explanation
Indices: 156554--158175 Score: 693
Period size: 84 Copynumber: 19.3 Consensus size: 82
156544 CCTTGGAGAG
* * * ** * *
156554 TTCCTTACCATTAGTTTG-CTCGTCGTCTTTGACCCTACTGACTTCCTTATCTTTAGTCTGCTTG
1 TTCCTTACCTTTAGTCTGCCT-GTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCTGC-CG
* *
156618 TCAGCTTTGACCATAGAGAC
64 TCGGCTTTGACCCTA-AGAC
* * ** * * * *
156638 TTCCTAACTTTTAGTCTGTTTGTCGGCTTTGACCCTAGAAAACTTCCTTGCCTTTAGTTTGCTTG
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTCCTTACCTTTAGTCTGC-CG
* * *
156703 TCGACTTTGATCCAAGAGAC
64 TCGGCTTTGACCCTA-AGAC
* * * ** * *
156723 TACCTTACCTTTAGTCTACCTATCAACTTTGACCCTAGAGACTTACTTACCTTTAGTCTGCCTAT
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCC-GT
*
156788 CGGTTTTGACCCT-AG--
65 CGGCTTTGACCCTAAGAC
* * * * * ** * * *
156803 TTCCTTTTGTACCTTTAGTCTACCGGTCAGCTTTGACCTTGGAGA-TTTTTTCACTTTTTGTCTA
1 TTCC---T-TACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTT-ACCTTTAGTCTG
* * * *
156867 CTTGTCGGATTTAACACTAGAGAC
61 C-CGTCGGCTTTGACCCTA-AGAC
* * * * * ** *
156891 TTTCTCACCTTTAGTTTGCCTGCCGGCTTTGACCCTAGAAACTTTTTTACCTTTAGTCTGGCTGT
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCT-GCCGT
*
156956 CAGCTTTGACCCTGGAA-AC
65 CGGCTTTGACCCT--AAGAC
* * * * * * * ** * *
156975 TT-TTTGACCTTTATTCTACCTGTCGACTTTCACCTTGGAGACTTCCTTAGATTTAGTCTACCCA
1 TTCCTT-ACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCT-GCCG
*
157039 TCAGCTTTGACCCTAGGAGAC
64 TCGGCTTTGACCCTA--AGAC
* * * * * * * *
157060 ATCCTTACCTTTATTCTACCCGTCAGCTTTGACCCTAGAGACTTCTTTACCTTTAGTCATACCCA
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTC-T-GCCG
** *
157125 TCGATTTTGACCCCAGAGAC
64 TCGGCTTTGACCCTA-AGAC
* * * *
157145 TTTCTTACCTTTAGTCTACCCGTCGG-TATTGACCCTAGAGACTTCCTTGCCTTTAGTCTGTCCG
1 TTCCTTACCTTTAGTCTGCCTGTCGGCT-TTGACCCTAGAGACTTCCTTACCTTTAGTCTG-CCG
* *
157209 TTGGCTTTAACCCTAATGAC
64 TCGGCTTTGACCCTAA-GAC
* * * * *
157229 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTACTAGT
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCTGC-CGT
* * ** *
157294 TGGCTTTAACATTGGAGAC
65 CGGCTTTGACCCT-AAGAC
* ** * * * *
157313 TTCTTTACCTTTAGTCTGCCCCTCGGCTTTGTA-CCTGGAGACTTCTTTACCTTTAGTCTACCCA
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTG-ACCCTAGAGACTTCCTTACCTTTAGTCT-GCCG
* * * **
157377 TCGACTTTAACCTTGGGGAC
64 TCGGCTTTGACCCT-AAGAC
* * * *
157397 TT-CTTCACCTTTAATCTAGCC-GTCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTACCT
1 TTCCTT-ACCTTTAGTCT-GCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCC-
* * * ** *
157460 ATCGGCTATGACCTTGTGGAA
63 GTCGGCTTTGACCCT-AAGAC
** * * * * *
157481 TT-CTTCACCGTTT-GTCTGCCTGTCAACCTTGACCTTGGAGA-TAT-TTTCACCTTTTGTCTGC
1 TTCCTT-ACC-TTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACT-TCCTT-ACCTTTAGTCTGC
* * ** *
157542 CTGTTGGCCTACACCCTTGAGAC
62 C-GTCGGCTTTGACCC-TAAGAC
* * * * * * * *
157565 TTGC-GA-CTTTCAGCCTGCTTGTCGG-TTCTAACCTTGGAAACTTCCTTACCTTTAGTCT-CCT
1 TTCCTTACCTTT-AGTCTGCCTGTCGGCTT-TGACCCTAGAGACTTCCTTACCTTTAGTCTGCC-
* * *
157626 TATCAGCTTTTACCCTAGAGAC
63 -GTCGGCTTTGACCCTA-AGAC
* * * * *
157648 TTCCTTACCATTAGTCTGCTTGTCGGCTTTGACCAT-GAAGACTT-CTTGA-ATATTAGTTTGCC
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTCCTT-ACCT-TTAGTCTGCC
*** *
157710 TGTCGGCTTTGATTTTGGAGAC
63 -GTCGGCTTTGACCCT-AAGAC
*** * * * * * * * *
157732 TAATTTACCTTTAGTCTACATATCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGCCTACCCGT
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCT-GCCGT
* *
157797 CGGCTTTGACCTTGGAGAC
65 CGGCTTTGACCCT-AAGAC
* * * ** * * * * *
157816 ATCTTTACCTTTAGTCTGCCTGTCAGCTTTGACTTTGGAAACTTCCTTGCCTTTAGTCTGCCTTT
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCGTC
*
157881 GGCTTTGACCTTACAGAC
66 GGCTTTGACCCTA-AGAC
* ** * * * * *
157899 TTCCTTACCTTTAGTCTGCCCGTCGATTTTGACAC-AGAAGATTTCTTTAACTTTAGTCTACCTG
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTCCTTACCTTTAGTCTGCC-G
* *
157963 TCGGCTTTGACCTTGGAGAC
64 TCGGCTTTGACCCT-AAGAC
* * * * * * * *
157983 TTCCTGACCTTTAGTTTGCCAGTCAGCTTTGACCTTAGAGATTTCTTTACCTTTAGTCTACTCGT
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCTGC-CGT
*
158048 CGGCTTTGACCTTAAAGAC
65 CGGCTTTGACCCT-AAGAC
* * * ** *
158067 ATCCTTACCTTTAGTCTACCTATTAGCTTTGA-CTTAAGAGACTTCCTAACTTACCTTTAGTCTG
1 TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCT-AGAGACTT-C---CTTACCTTTAGTCTG
* *
158131 CC-TGCTGGCTTTGACACTAGGCAC
61 CCGT-C-GGCTTTGACCCTAAG-AC
*
158155 TTCCTTACCTTTAGTCCGCCT
1 TTCCTTACCTTTAGTCTGCCT
158176 AATAACTTTG
Statistics
Matches: 1187, Mismatches: 277, Indels: 144
0.74 0.17 0.09
Matches are distributed among these distances:
80 3 0.00
81 3 0.00
82 9 0.01
83 138 0.12
84 754 0.64
85 206 0.17
86 23 0.02
87 4 0.00
88 47 0.04
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (82 bp):
TTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCGTC
GGCTTTGACCCTAAGAC
Found at i:157976 original size:209 final size:212
Alignment explanation
Indices: 157735--158132 Score: 511
Period size: 209 Copynumber: 1.9 Consensus size: 212
157725 TGGAGACTAA
* * * *
157735 TTTACCTTTAGTCTACATATCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGCCTACCCGTCGG
1 TTTAACTTTAGTCTACATATCAGCTTTGACCTTGGAGACTTCCTGACCTTTAGCCTACCAGTCAG
* * * * *
157800 CTTTGACCTTGGAGACATCTTTACCTTTAGTCTGC-CTGTCAGCTTTGACTTTGGAA-ACTTCCT
66 CTTTGACCTTAGAGACATCTTTACCTTTAGTCTACTC-GTCAGCTTTGACCTT-AAAGACATCCT
* * *
157863 TGCCTTTAGTCTGCCT-TTGGCTTTGACCTT-ACAGACTT-C-CTTACCTTTAGTCTGCCCGTCG
129 TACCTTTAGTCTACCTATTAGCTTTGA-CTTAACAGACTTCCACTTACCTTTAGTCTGCCCGTCG
157924 ATTTTGACACAGAAGATTTC
193 ATTTTGACACAGAAGATTTC
* * * ** *
157944 TTTAACTTTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTCCTGACCTTTAGTTTGCCAGTCAG
1 TTTAACTTTAGTCTACATATCAGCTTTGACCTTGGAGACTTCCTGACCTTTAGCCTACCAGTCAG
** *
158009 CTTTGACCTTAGAGATTTCTTTACCTTTAGTCTACTCGTCGGCTTTGACCTTAAAGACATCCTTA
66 CTTTGACCTTAGAGACATCTTTACCTTTAGTCTACTCGTCAGCTTTGACCTTAAAGACATCCTTA
*
158074 CCTTTAGTCTACCTATTAGCTTTGACTTAAGAGACTTCCTAACTTACCTTTAGTCTGCC
131 CCTTTAGTCTACCTATTAGCTTTGACTTAACAGACTTCC--ACTTACCTTTAGTCTGCC
158133 TGCTGGCTTT
Statistics
Matches: 159, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
208 2 0.01
209 122 0.77
210 17 0.11
211 1 0.01
214 17 0.11
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (212 bp):
TTTAACTTTAGTCTACATATCAGCTTTGACCTTGGAGACTTCCTGACCTTTAGCCTACCAGTCAG
CTTTGACCTTAGAGACATCTTTACCTTTAGTCTACTCGTCAGCTTTGACCTTAAAGACATCCTTA
CCTTTAGTCTACCTATTAGCTTTGACTTAACAGACTTCCACTTACCTTTAGTCTGCCCGTCGATT
TTGACACAGAAGATTTC
Found at i:158084 original size:126 final size:126
Alignment explanation
Indices: 156539--158170 Score: 838
Period size: 126 Copynumber: 12.9 Consensus size: 126
156529 TCTTCACTTT
* * * * * * ***
156539 TTTGACCTTGGAGAGTTCCTTACCATTAGTTTG-CTCGTCGTCTTTGACCCTACTGACTTCCTTA
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCT-GTCGGCTTTGACCTTGGAGACTTCCTTA
* ** * * * * ****
156603 TCTTTAGTCTGCTTGTCAGCTTTGACCATAGAGACTTCCTAACTTTTAGTCTGTTTGTCGGC
65 CCTTTAGTCTGCCAGTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * * * * * ** *
156665 TTTGACCCTAGAAAACTTCCTTGCCTTTAGTTTGCTTGTCGACTTTGATCC-AAGAGACTACCTT
1 TTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCCTT
* * * * * * ** *
156729 ACCTTTAGTCTACCTA-TCAACTTTGACCCTAGAGACTTACTTACCTTTAGTCTGCCTATCGGT
64 ACCTTTAGTCTGCC-AGTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* *** * * * * **
156792 TTTGACCCTAGTTCCTT-TTGTACCTTTAGTCTACCGGTCAGCTTTGACCTTGGAGA-TTTTTTC
1 TTTGACCTTAGAGACTTCCT-TACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTT-
* * * ** * * * * * * * * * *
156855 ACTTTTTGTCTACTTGTCGGATTTAACAC-TAGAGACTTTCTCACCTTTAGTTTGCCTGCCGGC
64 ACCTTTAGTCTGCCAGTCAGCTTTGAC-CTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * ** * * * * *
156918 TTTGACCCTAGAAACTTTTTTACCTTTAGTCTGGCTGTCAGCTTTGACCCTGGAAACTT-TTTGA
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTT-A
* * * * ** * *
156982 CCTTTATTCTACCTGTC-GACTTTCACCTTGGAGACTTCCTTAGATTTAGTCTACCCATCAGC
65 CCTTTAGTCTGCCAGTCAG-CTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * * * * * * * *
157044 TTTGACCCTAGGAGACATCCTTACCTTTATTCTACCCGTCAGCTTTGACCCTAGAGACTTCTTTA
1 TTTGACCTTA-GAGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTA
* * *** *
157109 CCTTTAGTCATACCCA-TC-GATTTTGACCCCAGAGACTTTCTTACCTTTAGTCTACCCGTCGG-
65 CCTTTAGTC-T-GCCAGTCAG-CTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * * * * *
157171 TATTGACCCTAGAGACTTCCTTGCCTTTAGTCTGTCC-GTTGGCTTTAACCCT-AATGACTTCCT
1 T-TTGACCTTAGAGACTTCCTTACCTTTAGTCTG-CCTGTCGGCTTTGACCTTGGA-GACTTCCT
* * * ** *
157234 TACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTACTAGTTGGC
63 TACCTTTAGTCTGCCAGTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * * * ** *
157298 TTTAACATTGGAGACTTCTTTACCTTTAGTCTGCCCCTCGGCTTTGTACC-TGGAGACTTCTTTA
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTG-ACCTTGGAGACTTCCTTA
* * * * * *
157362 CCTTTAGTCTACCCA-TC-GACTTTAACCTTGGGGACTT-CTTCACCTTTAATCTAGCCGTCAGC
65 CCTTTAGTCT-GCCAGTCAG-CTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTACCCGTCGGC
* * * * * *
157424 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTACCTATCGGCTATGACCTTGTG-GAATT-CTTC
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTG-GAGACTTCCTT-
* * * * * * * *
157487 ACCGTTT-GTCTGCCTGTCAACCTTGACCTTGGAGA-TAT-TTTCACCTTTTGTCTGCCTGTTGG
64 ACC-TTTAGTCTGCCAGTCAGCTTTGACCTTGGAGACT-TCCTT-ACCTTTAGTCTACCCGTCGG
157549 C
126 C
* ** * * * * * *
157550 CTACACCCTT-GAGACTTGC-GA-CTTTCAGCCTGCTTGTCGG-TTCTAACCTTGGAAACTTCCT
1 TTTGA-CCTTAGAGACTTCCTTACCTTT-AGTCTGCCTGTCGGCTT-TGACCTTGGAGACTTCCT
* * * * * **
157611 TACCTTTAGTCT-CCTTA-TCAGCTTTTACCCTAGAGACTTCCTTACCATTAGTCTGCTTGTCGG
63 TACCTTTAGTCTGCC--AGTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGG
157674 C
126 C
* * * ** ***
157675 TTTGACCAT-GAAGACTT-CTTGA-ATATTAGTTTGCCTGTCGGCTTTGATTTTGGAGACTAATT
1 TTTGACCTTAG-AGACTTCCTT-ACCT-TTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCT
* * *
157737 TACCTTTAGTCT-ACATATCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGCCTACCCGTCGGC
63 TACCTTTAGTCTGCCA-GTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * * * * * *
157801 TTTGACCTTGGAGACATCTTTACCTTTAGTCTGCCTGTCAGCTTTGACTTTGGAAACTTCCTTGC
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTAC
* ** ** * **
157866 CTTTAGTCTGCC-TTTGGCTTTGACCTTACAGACTTCCTTACCTTTAGTCTGCCCGTCGAT
66 CTTTAGTCTGCCAGTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * * * *
157926 TTTGACAC--AGAAGATTTCTTTAACTTTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTCCTG
1 TTTGAC-CTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTT
* * * * *
157989 ACCTTTAGTTTGCCAGTCAGCTTTGACCTTAGAGATTTCTTTACCTTTAGTCTACTCGTCGGC
64 ACCTTTAGTCTGCCAGTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
* * * * ** *
158052 TTTGACCTTAAAGACATCCTTACCTTTAGTCTACCTATTAGCTTTGA-CTTAAGAGACTTCCTAA
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTT-GGAGACTT-C---
* * * *
158116 CTTACCTTTAGTCTGCCTG-CTGGCTTTGACACTAGG-CACTTCCTTACCTTTAGTC
61 CTTACCTTTAGTCTGCCAGTC-AGCTTTGAC-CTTGGAGACTTCCTTACCTTTAGTC
158171 CGCCTAATAA
Statistics
Matches: 1154, Mismatches: 283, Indels: 134
0.73 0.18 0.09
Matches are distributed among these distances:
124 18 0.02
125 196 0.17
126 614 0.53
127 226 0.20
128 54 0.05
129 3 0.00
130 40 0.03
131 3 0.00
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.39
Consensus pattern (126 bp):
TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTAC
CTTTAGTCTGCCAGTCAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGGC
Found at i:158185 original size:42 final size:42
Alignment explanation
Indices: 158063--158201 Score: 102
Period size: 42 Copynumber: 3.2 Consensus size: 42
158053 TTGACCTTAA
* ** * * *
158063 AGACATCCTTACCTTTAGTCTACCTATTAGCTTTGAC-TTAAG
1 AGACTTCCTTACCTTTAGTCCGCCTAATAACTTTGACACT-AG
* ** **
158105 AGACTTCCTAACTTACCTTTAGTCTGCCTGCTGGCTTTGACACTAG
1 AGACTT-C---CTTACCTTTAGTCCGCCTAATAACTTTGACACTAG
*
158151 -GCACTTCCTTACCTTTAGTCCGCCTAATAACTTTGACATTAG
1 AG-ACTTCCTTACCTTTAGTCCGCCTAATAACTTTGACACTAG
158193 AGACTTCCT
1 AGACTTCCT
158202 AATTTTTCGT
Statistics
Matches: 78, Mismatches: 12, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
42 41 0.53
43 2 0.03
45 2 0.03
46 32 0.41
47 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (42 bp):
AGACTTCCTTACCTTTAGTCCGCCTAATAACTTTGACACTAG
Found at i:158341 original size:42 final size:42
Alignment explanation
Indices: 158275--158433 Score: 167
Period size: 42 Copynumber: 3.8 Consensus size: 42
158265 TTCTTTACCA
* * * *
158275 TTAGTTTGC-CGTTGGCTTTAACCCTGGTGACTTCCTCACCT
1 TTAGTTTGCTTGTCGGCTTTGACCCTGGAGACTTCCTCACCT
* * *
158316 TTAGTTTGCTTGTCGGCTTTGACCCTAGAGACTTCCTGACTT
1 TTAGTTTGCTTGTCGGCTTTGACCCTGGAGACTTCCTCACCT
* * * * *
158358 TTAGTCTGCTTGTCGGCTTTGAACCTAGAAAACTTCCTTACCT
1 TTAGTTTGCTTGTCGGCTTTGACCCT-GGAGACTTCCTCACCT
* * *
158401 TTAGTTTGTTTGTCGACTTTGACCTTGGAGACT
1 TTAGTTTGCTTGTCGGCTTTGACCCTGGAGACT
158434 ACCTGTAGAC
Statistics
Matches: 95, Mismatches: 21, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
41 9 0.09
42 54 0.57
43 32 0.34
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (42 bp):
TTAGTTTGCTTGTCGGCTTTGACCCTGGAGACTTCCTCACCT
Found at i:158494 original size:52 final size:52
Alignment explanation
Indices: 158416--158519 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
158406 TTGTTTGTCG
158416 ACTTTGACCTTGGAGACTACCTGTAGACACCTCATTTTGTCTAAGCCAATTT
1 ACTTTGACCTTGGAGACTACCTGTAGACACCTCATTTTGTCTAAGCCAATTT
* *
158468 ACTTTGACCTTGGAGACTACCTGTAGATACCTCATTTTGTCTGAGCCAATTT
1 ACTTTGACCTTGGAGACTACCTGTAGACACCTCATTTTGTCTAAGCCAATTT
158520 TTTGGTAACC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (52 bp):
ACTTTGACCTTGGAGACTACCTGTAGACACCTCATTTTGTCTAAGCCAATTT
Found at i:159575 original size:11 final size:11
Alignment explanation
Indices: 159559--159645 Score: 61
Period size: 12 Copynumber: 7.5 Consensus size: 11
159549 GTTCAACTAA
159559 AAAAAAGAAAG
1 AAAAAAGAAAG
*
159570 AAAAAAGAAAAA
1 AAAAAAG-AAAG
159582 AAAAAGAGAAAG
1 AAAAA-AGAAAG
*
159594 AAAAGAGAAA-
1 AAAAAAGAAAG
159604 AAAAAA-AAGAG
1 AAAAAAGAA-AG
*
159615 AAAGAAAAGAGAG
1 -AA-AAAAGAAAG
*
159628 AAGAAATAGAAAC
1 AA-AAA-AGAAAG
159641 AAAAA
1 AAAAA
159646 GGTAGAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
9 2 0.03
10 6 0.10
11 12 0.20
12 26 0.43
13 14 0.23
14 1 0.02
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.01
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:159605 original size:25 final size:25
Alignment explanation
Indices: 159557--159626 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
159547 AGGTTCAACT
*
159557 AAAAAAA-AGAAAGAAAAAAG-AAA
1 AAAAAAAGAGAAAGAAAAGAGAAAA
159580 AAAAAAAGAGAAAGAAAAGAGAAAA
1 AAAAAAAGAGAAAGAAAAGAGAAAA
159605 AAAAAAAGAGAAAGAAAAGAGA
1 AAAAAAAGAGAAAGAAAAGAGA
159627 GAAGAAATAG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 7 0.16
24 12 0.27
25 25 0.57
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (25 bp):
AAAAAAAGAGAAAGAAAAGAGAAAA
Found at i:171142 original size:42 final size:42
Alignment explanation
Indices: 171074--171413 Score: 174
Period size: 42 Copynumber: 8.1 Consensus size: 42
171064 TGACACTACC
* * * *
171074 TTACCTTTAGTCTA-CCCATC-GACTTTGACCCTAAAGACATCT
1 TTACCTTTAGTC-AGCCCGTCAG-CTTTGACCTTAGAGACTTCT
** * *
171116 TTACCTTTAGTCAGCTGGTCAGCTTTGACCTTGGAGACTTCC
1 TTACCTTTAGTCAGCCCGTCAGCTTTGACCTTAGAGACTTCT
* *
171158 TTACC-TTAGGTCTGCCCGTCGGCTTTGACCTTAGAGACTTCT
1 TTACCTTTA-GTCAGCCCGTCAGCTTTGACCTTAGAGACTTCT
** * * *
171200 TTACCTTTAGTCTCCCCGTCGGTTTTGACAC--AGAAGATTTCT
1 TTACCTTTAGTCAGCCCGTCAGCTTTGAC-CTTAG-AGACTTCT
* * ** * * *
171242 TTAACTTTAATCTA-CCTATCGGCTTTGACCTTGGAGACTTCC
1 TTACCTTTAGTC-AGCCCGTCAGCTTTGACCTTAGAGACTTCT
* * ** ** * * *
171284 TAACCTTTAGTCTGCGAGTCAGCAATGGCCCTAAAGACTTCT
1 TTACCTTTAGTCAGCCCGTCAGCTTTGACCTTAGAGACTTCT
** * ** * * *
171326 TTACCTTTAGTCTA-TTCATTGGCTTTGACCCTAAAGACTTCC
1 TTACCTTTAGTC-AGCCCGTCAGCTTTGACCTTAGAGACTTCT
** *
171368 TTACCTTTAGTCTA-CCTATTAGCTTTGACCTTAGAGACTTCT
1 TTACCTTTAGTC-AGCCCGTCAGCTTTGACCTTAGAGACTTCT
171410 TTAC
1 TTAC
171414 TAACCATTAG
Statistics
Matches: 227, Mismatches: 60, Indels: 22
0.73 0.19 0.07
Matches are distributed among these distances:
41 7 0.03
42 214 0.94
43 6 0.03
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.37
Consensus pattern (42 bp):
TTACCTTTAGTCAGCCCGTCAGCTTTGACCTTAGAGACTTCT
Found at i:171227 original size:84 final size:84
Alignment explanation
Indices: 171072--171413 Score: 204
Period size: 84 Copynumber: 4.1 Consensus size: 84
171062 TGTGACACTA
* **
171072 CCTTACCTTTAGTCTACCCATCGACTTTGACCCTAAAGACATCTTTACCTTTAGTCAGCTGGTCA
1 CCTTACCTTTAGTCTACCCATCGACTTTGACCCTAAAGACATCTTTACCTTTAGTCACCCCGTCA
171137 GCTTTGACCTTGGAGACTT
66 GCTTTGACCTTGGAGACTT
* * * * * * *
171156 CCTTACC-TTAGGTCTGCCCGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTAGTCTCCCCGTC
1 CCTTACCTTTA-GTCTACCCATCGACTTTGACCCTAAAGACATCTTTACCTTTAGTCACCCCGTC
* * * * *
171220 GGTTTTGACAC-AGAAGATTT
65 AGCTTTGAC-CTTGGAGACTT
* * * * * * ** * * * ** **
171240 CTTTAACTTTAATCTACCTATCGGCTTTGACCTTGGAGACTTCCTAACCTTTAGTCTGCGAGTCA
1 CCTTACCTTTAGTCTACCCATCGACTTTGACCCTAAAGACATCTTTACCTTTAGTCACCCCGTCA
** * * **
171305 GCAATGGCCCTAAAGACTT
66 GCTTTGACCTTGGAGACTT
* ** * * * * ** *
171324 CTTTACCTTTAGTCTATTCATTGGCTTTGACCCTAAAGACTTCCTTACCTTTAGTCTA-CCTATT
1 CCTTACCTTTAGTCTACCCATCGACTTTGACCCTAAAGACATCTTTACCTTTAGTC-ACCCCGTC
*
171388 AGCTTTGACCTTAGAGACTT
65 AGCTTTGACCTTGGAGACTT
*
171408 CTTTAC
1 CCTTAC
171414 TAACCATTAG
Statistics
Matches: 198, Mismatches: 55, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
83 4 0.02
84 190 0.96
85 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (84 bp):
CCTTACCTTTAGTCTACCCATCGACTTTGACCCTAAAGACATCTTTACCTTTAGTCACCCCGTCA
GCTTTGACCTTGGAGACTT
Found at i:171353 original size:126 final size:126
Alignment explanation
Indices: 171074--171408 Score: 343
Period size: 126 Copynumber: 2.7 Consensus size: 126
171064 TGACACTACC
* * * * * * * *
171074 TTACCTTTAGTCTACCCATCGACTTTGACCCTAAAGACATCTTTACCTTTAGTC-AGCTGGTCAG
1 TTACCTTTAGTCTACCCATCGGCTTTGACACTAAAGACTTCCTTAACTTTAATCTACCT-ATCAG
* * * ** * *
171138 CTTTGACCTTGGAGACTTCCTTACCTTAGGTCTGCCCGTCGGCTTTGACCTTAGAGACTTCT
65 CTTTGACCTTGGAGACTTCCTAACCTTAGGTCTGCCAGTCAGCAATGACCCTAAAGACTTCT
* * * * * *
171200 TTACCTTTAGTCTCCCCGTCGGTTTTGACAC-AGAAGATTTCTTTAACTTTAATCTACCTATCGG
1 TTACCTTTAGTCTACCCATCGGCTTTGACACTA-AAGACTTCCTTAACTTTAATCTACCTATCAG
* *
171264 CTTTGACCTTGGAGACTTCCTAACCTTTA-GTCTGCGAGTCAGCAATGGCCCTAAAGACTTCT
65 CTTTGACCTTGGAGACTTCCTAACC-TTAGGTCTGCCAGTCAGCAATGACCCTAAAGACTTCT
** * * * * *
171326 TTACCTTTAGTCTATTCATTGGCTTTGACCCTAAAGACTTCCTTACCTTTAGTCTACCTATTAGC
1 TTACCTTTAGTCTACCCATCGGCTTTGACACTAAAGACTTCCTTAACTTTAATCTACCTATCAGC
*
171391 TTTGACCTTAGAGACTTC
66 TTTGACCTTGGAGACTTC
171409 TTTACTAACC
Statistics
Matches: 170, Mismatches: 35, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
125 1 0.01
126 162 0.95
127 7 0.04
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (126 bp):
TTACCTTTAGTCTACCCATCGGCTTTGACACTAAAGACTTCCTTAACTTTAATCTACCTATCAGC
TTTGACCTTGGAGACTTCCTAACCTTAGGTCTGCCAGTCAGCAATGACCCTAAAGACTTCT
Found at i:171631 original size:42 final size:42
Alignment explanation
Indices: 171549--172855 Score: 264
Period size: 42 Copynumber: 31.0 Consensus size: 42
171539 GACCTTTTTA
* * * * *
171549 ACCCTGGAAAGTTCTTTACCATTAGTTTGCCTT-TC-AGCTTTA
1 ACCCTGGAGACTTCCTTACCTTTAGTTTG-CTTGTCGA-CTTTG
* * *
171591 ACCCTGGTGACTTCCTTACCTTTAGTTTGTTTGTCGGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * * * * *
171633 ACCCTAGAGTCTTCCTGACTTTTAGTCTGCCTATCGAATTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
** *
171675 ACCCTAAAAAACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
1 ACCCT-GGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * * * * *
171718 ACCTTGGAGACTACCTTACCTTTAATCTACCTATC-AGCTTTA
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGA-CTTTG
* ** * * * * * * *
171760 ACCTTAAAGATTTCCTAACCTTTAGTGTACCTGTCGAGTTTT
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
*** * * * * * *
171802 ATGTTAGAGATTTCCTTACCATTAGTCTAGC-TGCCGGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGT-TTGCTTGTCGACTTTG
* * * *
171844 ATCCTGTAGACTTCCTTACCTTTAGTTTGCCTATCGACTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* ** ** * * **
171886 ACCCTAGTTA-TTATTTACCTTTAGTCT-ATTGTCGGTTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * * *
171926 ACCTTAGAGACTT-TTTCACTCTTT-GTTTGCCTATCGGCTTTG
1 ACCCTGGAGACTTCCTT-AC-CTTTAGTTTGCTTGTCGACTTTG
* * * * * * * * * * *
171968 ACACTAGAGACATCATGACTTTTAGTCTGCCTATTGGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
** * * * ** ** *
172010 A-CCTTAAAACCTTCTTTACCTTTAGTCTGCCCGTCGGTTTTA
1 ACCCTGGAGA-CTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * * * *
172052 AACTTGGAAACTTCCTGACCTTTAGTCTGCCTGTCAACTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * * * *
172094 ACCTTAGAGACTTTCCTTACATTTAGTTTACCTATCGACTTTA
1 ACCCTGGAGAC-TTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * ** * **
172137 ACCCTAGAGACTTTCTAACCTTTA-TTCTGCCCGTCGGCACTG
1 ACCCTGGAGACTTCCTTACCTTTAGTT-TGCTTGTCGACTTTG
* * * ** * * *
172179 ACCTTGGAGACTACTTTACCTTTAGTCTACCCT-TC-AGTTTTA
1 ACCCTGGAGACTTCCTTACCTTTAGT-TTGCTTGTCGA-CTTTG
* * * * *** * *
172221 ACCTTAGAGACTACCTTACCTTTAGTTTACCAATCGGCATTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * * *
172263 ACCTTGGAGACTTCCTTATCTTTAGTCTGCCTATCGGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
** * * **
172305 ATGCTAGAGACTTCCTTACCTTTAGTCTAATTGTCGACTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
** * * * * * *
172347 ACTTTTGAAACATT--TGTACCTTTAGTCTGCTAGTCG-GTTTA
1 ACCCTGGAGAC-TTCCT-TACCTTTAGTTTGCTTGTCGACTTTG
* * * * * ** *
172388 ACACTAGAAACATT-CTCACCTTTAGTCTGCCGGTTAGA-TTTG
1 ACCCTGGAGAC-TTCCTTACCTTTAGTTTGCTTG-TCGACTTTG
* * * * **
172430 ACCTTGGGGGCTTCTTTACCTTTAGTTTGCCCGTC-AGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGA-CTTTG
* * * * * *
172472 ACCTTGGACACGTCTTTACCTTTAGTTTGCCTGTCAACTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
** * * * ** *
172514 ACTTTAGAGACTTCCTTGCCTTTAGTCTGCCCGTCGGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
** * * *
172556 ACGTTAGAGACTTCCTTACCTTTAGTCTGCTCGTC-AGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGA-CTTTG
* * * * * * * ** *
172598 A-CATAGAAGACTTCTTTACCTTTAGTCTACCTATCGGTTTTA
1 ACCCT-GGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * * *
172640 ACCTTGGAGACTTCCTGACCTTCAGTCTGC-CGATCAACTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTG-TCGACTTTG
* ** ** * ** *
172682 ACCCTAGAGACTTTTTTACCTTTAGCCTACTCATTGACTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * *
172724 ACCCTAGAGACTTCCTTACCTTTAGTCTACCTATC-AGCTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGA-CTTTG
** * ** *
172766 ACCCTAAAGACTTCCTTACTTACCTTTAGTTTGCCTGTTAATTTTG
1 ACCCTGGAGACTT-C---CTTACCTTTAGTTTGCTTGTCGACTTTG
* * * * *
172812 ACACTAGAGACTTCCTTACCTTTAGTCTGCTTGACAACTTTG
1 ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
172854 AC
1 AC
172856 ATTAGAGCCT
Statistics
Matches: 936, Mismatches: 286, Indels: 86
0.72 0.22 0.07
Matches are distributed among these distances:
40 19 0.02
41 73 0.08
42 725 0.77
43 84 0.09
44 1 0.00
45 1 0.00
46 32 0.03
47 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (42 bp):
ACCCTGGAGACTTCCTTACCTTTAGTTTGCTTGTCGACTTTG
Found at i:172097 original size:84 final size:83
Alignment explanation
Indices: 171599--172855 Score: 473
Period size: 84 Copynumber: 14.9 Consensus size: 83
171589 TAACCCTGGT
* * *** * * * * * *
171599 GACTTCCTTACCTTTAGTTTGTTTGTCGGCTTTGACCCTAGAGTCTTCCTGACTTTTAGTCTGCC
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
* *
171664 TATCGAA-TTTGACCCTAAAA
66 TGTC-AACTTTGA-CCT-TAA
* * * ** ** * * * * *
171684 AACTTCCTTACCTTTAGTTTGCTTGTCGACTTTGACCTTGGAGACTACCTTACCTTTAATCTACC
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
* * *
171749 TATCAGCTTTAACCTTAAA
66 TGTCAACTTTGACCTT-AA
* * * * * * ** * *
171768 GATTTCCTAACCTTTAGTGTACCTGTCGAGTTTT-ATGTTAGAGATTTCCTTACCATTAGTCTAG
1 GACTTCTTTACCTTTAGTCTGCCCGTCG-GTTTTAACCTTAGAGACTTCCTTACCTTTAGTCT-G
* **
171832 -CTGCCGGCTTTGATCCTGT-A
64 CCTGTCAACTTTGA-CCT-TAA
* * ** ** * * ** ** **
171852 GACTTCCTTACCTTTAGTTTGCCTATCGACTTTGACCCTAGTTA-TTATTTACCTTTAGTCT-AT
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
***
171915 TGTCGGTTTTGACCTTAGA
66 TGTCAACTTTGACCTTA-A
* ** * * * * * *
171934 GACTT-TTTCACTCTTT-GTTTGCCTATCGGCTTTGACAC-TAGAGACATCATGACTTTTAGTCT
1 GACTTCTTT-AC-CTTTAGTCTGCCCGTCGGTTTTAAC-CTTAGAGACTTCCTTACCTTTAGTCT
* ***
171996 GCCTATTGGCTTTGACCTTAA
63 GCCTGTCAACTTTGACCTTAA
* * * * *
172017 AACCTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAAACTTGGAAACTTCCTGACCTTTAGTCTGC
1 GA-CTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGC
172082 CTGTCAACTTTGACCTTAGA
65 CTGTCAACTTTGACCTTA-A
* * * * ** ** * * * *
172102 GACTTTCCTTACATTTAGTTTACCTATCGACTTTAACCCTAGAGACTTTCTAACCTTTATTCTGC
1 GAC-TTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGC
* ** ** *
172167 CCGTCGGCACTGACCTTGGA
65 CTGTCAACTTTGACCTT-AA
* * * * * * *
172187 GACTACTTTACCTTTAGTCTACCCTTCAGTTTTAACCTTAGAGACTACCTTACCTTTAGTTTACC
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
** ** * *
172252 AATCGGCATTGACCTTGGA
66 TGTCAACTTTGACCTT-AA
* * ** * ** **
172271 GACTTCCTTATCTTTAGTCTGCCTATCGGCTTTGATGC-TAGAGACTTCCTTACCTTTAGTCTAA
1 GACTTCTTTACCTTTAGTCTGCCCGTCGG-TTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGC
* * *
172335 TTGTCGACTTTGACTTTTGAA
65 CTGTCAACTTTGAC-CTT-AA
* ** * *
172356 -ACATT-TGTACCTTTAGTCTGCTAGTCGG-TTTAACAC-TAGAAACATT-CTCACCTTTAGTCT
1 GAC-TTCTTTACCTTTAGTCTGCCCGTCGGTTTTAAC-CTTAGAGAC-TTCCTTACCTTTAGTCT
* * **
172416 GCCGGTTAGA-TTTGACCTTGGG
63 GCCTGTCA-ACTTTGACCTT-AA
* * * * * * * * * *
172438 GGCTTCTTTACCTTTAGTTTGCCCGTCAGCTTTGACCTTGGACACGTCTTTACCTTTAGTTTGCC
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
*
172503 TGTCAACTTTGACTTTAGA
66 TGTCAACTTTGACCTTA-A
* * * * *
172522 GACTTCCTTGCCTTTAGTCTGCCCGTCGGCTTTGACGTTAGAGACTTCCTTACCTTTAGTCTG-C
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
* * *
172586 TCGTCAGCTTTGACATAGAA
66 T-GTCAACTTTGACCT-TAA
* ** * * *
172606 GACTTCTTTACCTTTAGTCTACCTATCGGTTTTAACCTTGGAGACTTCCTGACCTTCAGTCTGCC
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
*
172671 -GATCAACTTTGACCCTAGA
66 TG-TCAACTTTGACCTTA-A
* * * * * * ** * * *
172690 GACTTTTTTACCTTTAGCCTACTCATTGACTTTGACCCTAGAGACTTCCTTACCTTTAGTCTACC
1 GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
* * *
172755 TATCAGCTTTGACCCTAAA
66 TGTCAACTTTGA-CCTTAA
* * *** *
172774 GACTTCCTTACTTACCTTTAGTTTGCCTGTTAATTTTGACAC-TAGAGACTTCCTTACCTTTAGT
1 GACTT-C-T--TTACCTTTAGTCTGCCCGTCGGTTTTAAC-CTTAGAGACTTCCTTACCTTTAGT
* *
172838 CTGCTTGACAACTTTGAC
61 CTGCCTGTCAACTTTGAC
172856 ATTAGAGCCT
Statistics
Matches: 884, Mismatches: 241, Indels: 92
0.73 0.20 0.08
Matches are distributed among these distances:
80 1 0.00
81 5 0.01
82 49 0.06
83 95 0.11
84 524 0.59
85 151 0.17
86 2 0.00
87 1 0.00
88 55 0.06
89 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (83 bp):
GACTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCC
TGTCAACTTTGACCTTAA
Found at i:172185 original size:127 final size:126
Alignment explanation
Indices: 172027--172293 Score: 284
Period size: 127 Copynumber: 2.1 Consensus size: 126
172017 AACCTTCTTT
*** * *
172027 ACCTTTAGTCTGCCCGTCGGTTTTAAACTTGGAAACTTCCTGACCTTTAGTCT-GCCTGTCAACT
1 ACCTTTAGTCTGCCCGTCGGCACTAAACTTGGAAACTACCTGACCTTTAGTCTACCCT-TCAACT
* * *
172091 TTGACCTTAGAGACTTTCCTTACATTTAGTTTACCTATCGACTTTAACCCTAGAGACTTTCTA
65 TTAACCTTAGAGAC-TACCTTACATTTAGTTTACCAATCGACTTTAACCCTAGAGACTTTCTA
* * * * * * **
172154 ACCTTTATTCTGCCCGTCGGCACTGACCTTGGAGACTACTTTACCTTTAGTCTACCCTTCAGTTT
1 ACCTTTAGTCTGCCCGTCGGCACTAAACTTGGAAACTACCTGACCTTTAGTCTACCCTTCAACTT
* * * * * * * *
172219 TAACCTTAGAGACTACCTTACCTTTAGTTTACCAATCGGCATTGACCTTGGAGACTTCCTT
66 TAACCTTAGAGACTACCTTACATTTAGTTTACCAATCGACTTTAACCCTAGAGACTTTCTA
*
172280 ATCTTTAGTCTGCC
1 ACCTTTAGTCTGCC
172294 TATCGGCTTT
Statistics
Matches: 113, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
126 50 0.44
127 60 0.53
128 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (126 bp):
ACCTTTAGTCTGCCCGTCGGCACTAAACTTGGAAACTACCTGACCTTTAGTCTACCCTTCAACTT
TAACCTTAGAGACTACCTTACATTTAGTTTACCAATCGACTTTAACCCTAGAGACTTTCTA
Found at i:172557 original size:209 final size:209
Alignment explanation
Indices: 172236--172625 Score: 448
Period size: 209 Copynumber: 1.9 Consensus size: 209
172226 AGAGACTACC
* * * * **
172236 TTACCTTTAGTTTACCAATCGGCATTGACCTTGGAGACTTCCTTATCTTTAGTCTGCCTATCGGC
1 TTACCTTTAGTTTACCAATCAGCATTGACCTTGGACACGTCCTTACCTTTAGTCTGCCTATCAAC
** * *
172301 TTTGATGCTAGAGACTTCCTTACCTTTAGTCTAATTGTCGACTTTGACTTTTGAAACATT-TGTA
66 TTTGATGCTAGAGACTTCCTTACCTTTAGTCTAACCGTCGACTTTGACGTTAGAAAC-TTCT-TA
*
172365 CCTTTAGTCTGCTAGTC-GGTTTAACACTAGAA-ACATTC-TCACCTTTAGTCTGCCGGTTAGAT
129 CCTTTAGTCTGCTAGTCAGCTTTAACA-TAGAAGAC-TTCTTCACCTTTAGTCTGCCGGTTAGAT
172427 TTGACCTTGGGGGCTTCT
192 TTGACCTTGGGGGCTTCT
* ** * * * *
172445 TTACCTTTAGTTTGCCCGTCAGCTTTGACCTTGGACACGTCTTTACCTTTAGTTTGCCTGTCAAC
1 TTACCTTTAGTTTACCAATCAGCATTGACCTTGGACACGTCCTTACCTTTAGTCTGCCTATCAAC
* * ** * *
172510 TTTGACT-TTAGAGACTTCCTTGCCTTTAGTCTGCCCGTCGGCTTTGACGTTAGAGACTTCCTTA
66 TTTGA-TGCTAGAGACTTCCTTACCTTTAGTCTAACCGTCGACTTTGACGTTAGAAACTT-CTTA
* * *
172574 CCTTTAGTCTGCTCGTCAGCTTTGACATAGAAGACTTCTTTACCTTTAGTCT
129 CCTTTAGTCTGCTAGTCAGCTTTAACATAGAAGACTTCTTCACCTTTAGTCT
172626 ACCTATCGGT
Statistics
Matches: 148, Mismatches: 27, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
208 2 0.01
209 123 0.83
210 23 0.16
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (209 bp):
TTACCTTTAGTTTACCAATCAGCATTGACCTTGGACACGTCCTTACCTTTAGTCTGCCTATCAAC
TTTGATGCTAGAGACTTCCTTACCTTTAGTCTAACCGTCGACTTTGACGTTAGAAACTTCTTACC
TTTAGTCTGCTAGTCAGCTTTAACATAGAAGACTTCTTCACCTTTAGTCTGCCGGTTAGATTTGA
CCTTGGGGGCTTCT
Found at i:172579 original size:126 final size:126
Alignment explanation
Indices: 171599--174504 Score: 844
Period size: 126 Copynumber: 23.1 Consensus size: 126
171589 TAACCCTGGT
* *** * * * * * *
171599 GACTTCCTTACCTTTAGTTTGTTTGTCGGCTTTGACCCTAGAGTCTTCCTGACTTTTAGTCTGCC
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
** ** *** * * ** *
171664 TATCGAATTTGACCCTAAAAAACTTCCTTACCTTTAGTTTGCTTGTC-GACTTTGACCTTGGA
66 CGTCGGCTTTGA-CCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAG-CTTTGACCTTAGA
* * * * * * * * * *
171726 GACTACCTTACCTTTAATCTACCTATC-AGCTTTAACCTTAAAGATTTCCTAACCTTTAGTGTAC
1 GACTTCTTTACCTTTAGTTTACCTATCGA-CTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGC
* * ** * * * * * *
171790 CTGTCGAG-TTTTATGTTAGAGATTTCCTTACCATTAGTCTAG-CTGCCGGCTTTGATCC-T-GT
65 CCGTCG-GCTTTGACCTTGGAGACTTCCTTACCTTTAGTCT-GCCCGTCAGCTTTGA-CCTTAG-
171851 A
126 A
* * * ** ** **
171852 GACTTCCTTACCTTTAGTTTGCCTATCGACTTTGACCCTAGTTA-TTATTTACCTTTAGTCT-AT
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
* * * * * ** *
171915 TGTCGGTTTTGACCTTAGAGACTT-TTTCACTCTTT-GTTTGCCTATCGGCTTTGACAC-TAGA
66 CGTCGGCTTTGACCTTGGAGACTTCCTT-AC-CTTTAGTCTGCCCGTCAGCTTTGAC-CTTAGA
* * * * * * * * * * * *
171976 GACATCATGACTTTTAGTCTGCCTATTGGCTTTGACCTTA-AAACCTTCTTTACCTTTAGTCTGC
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGA-CTTCCTTACCTTTAGTCTGC
* * * * * * *
172040 CCGTCGGTTTTAAACTTGGAAACTTCCTGACCTTTAGTCTGCCTGTCAACTTTGACCTTAGA
65 CCGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
* * * * *
172102 GACTTTCCTTACATTTAGTTTACCTATCGACTTTAACCCTAGAGACTTTCTAACCTTTATTCTGC
1 GAC-TTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGC
** * * * * * *
172167 CCGTCGGCACTGACCTTGGAGACTACTTTACCTTTAGTCTACCCTTCAGTTTTAACCTTAGA
65 CCGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
* * * * * * * * *
172229 GACTACCTTACCTTTAGTTTACCAATCGGCATTGACCTTGGAGACTTCCTTATCTTTAGTCTGCC
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
** * * **** * *
172294 TATCGGCTTTGATGC-TAGAGACTTCCTTACCTTTAGTCTAATTGTC-GACTTTGACTTTTGA
66 CGTCGGCTTTGA-CCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAG-CTTTGACCTTAGA
* * * * * * * *
172355 AACATT-TGTACCTTTAGTCT-GCTAGTCG-GTTTAACACTAGAAACATT-CTCACCTTTAGTCT
1 GAC-TTCTTTACCTTTAGTTTACCTA-TCGACTTTAACCCTAGAGAC-TTCCTTACCTTTAGTCT
* ** * * * * * *
172416 GCCGGTTAGATTTGACCTTGGGGGCTTCTTTACCTTTAGTTTGCCCGTCAGCTTTGACCTTGGA
63 GCCCGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
* * * * * * ** *
172480 CACGTCTTTACCTTTAGTTTGCCTGTCAACTTTGACTTTAGAGACTTCCTTGCCTTTAGTCTGCC
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
* * * *
172545 CGTCGGCTTTGACGTTAGAGACTTCCTTACCTTTAGTCTGCTCGTCAGCTTTGA-CATAGAA
66 CGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAG-A
* ** * * * *
172606 GACTTCTTTACCTTTAGTCTACCTATCGGTTTTAACCTTGGAGACTTCCTGACCTTCAGTCTG-C
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
** * * ** * * * * * *
172670 CGATCAACTTTGACCCTAGAGACTTTTTTACCTTTAGCCTACTCAT-TGACTTTGACCCTAGA
66 CG-TCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAG-CTTTGACCTTAGA
* * * *
172732 GACTTCCTTACCTTTAGTCTACCTATC-AGCTTTGACCCTAAAGACTTCCTTACTTACCTTTAGT
1 GACTTCTTTACCTTTAGTTTACCTATCGA-CTTTAACCCTAGAGACTT-C---CTTACCTTTAGT
* * **** * ** * * *
172796 TTGCCTGTTAATTTTGACAC-TAGAGACTTCCTTACCTTTAGTCTGCTTGACAACTTTGACATTA
61 CTGCCCGTCGGCTTTGAC-CTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTA
172860 GA
125 GA
* * * ** * * * * * ** * *
172862 GCCTTCCTGATTTTTTGTCTGCCTGTCGGCTTCGACCCTTA-AAACTT-CTTAACTTT--TCTG-
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCC-TAGAGACTTCCTTACCTTTAGTCTGC
* * * * * * *
172922 --AT---C-TT---C---GAGAGTTCCTTACCATTAGTTTGCCCGTCGGCTTTGACCCTAGC
65 CCGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
* * * * * * * * ***
172972 GACTTCCTTACCTTTAGTTTGCTTGTCGGCTTTGACCCTAGAGACTTCCTGACTTTTAGTCTATG
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
** * * * * * * * * ** * * *
173037 TATTGACTTTGACCCTAGAAAACTTCTTTACGTTTAGTTTGCTTGT-TGACTTTGACCCTAAA
66 CGTCGGCTTTGA-CCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAG-CTTTGACCTTAGA
* * * * * *** ** * *
173099 GGCTTCCTTACCTTTAGTTTGCCTATCGGCTTTGACCCTAGTTCCTTTTTTACCTTTAGTTTGCT
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
* ** * * * ** ** * *
173164 AGTCATCTTTGACCTTAGAGACTT-TTTCACCTTTTGTCTGCTTGTCAAATTTAACAC-TAAA
66 CGTCGGCTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCCGTCAGCTTTGAC-CTTAGA
* * * * * * *
173225 GACTTCTTTACTTTTAGTTTGCTTGTCGACTTTGACCCTAGAAACTTCCTTACCTTTAGTCTGCT
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
* * * * * * ** * *
173290 TGTCAGCTTTGACCCTGGAAACTTCCTAACCTTTAGTCTACCAATC-GAATTTGACCTTGGA
66 CGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAG-CTTTGACCTTAGA
** * * * * *
173351 GACTTCTTTACAATTAGTCTACCTATCGACTTTGACCCTAGAGACATCCTTACTTTTATTCTGCC
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
** * * * * * * *
173416 CGTCGATTTTGACCCTAGAGACTTCTTTACCTTTAGTCTACTCGTC-GATTTTGACAC-TAGT
66 CGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAG-CTTTGAC-CTTAGA
* * * * * * *
173477 GACTTATTTACCTTTAGTCTACCCATC-AGCATTGACCCTAGAGACTTCTTTACCTTTAGTCTGT
1 GACTTCTTTACCTTTAGTTTACCTATCGA-CTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGC
* * * * ** **
173541 CCATTGGCTTTGACCCT-AAGGACTTTTTTACCTTTAGTCTGCTTGTCAGCTTTGACCTT-GAA
65 CCGTCGGCTTTGACCTTGGA-GACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAG-A
* * * * * *
173603 AACTTCATTACCTTTAGTTTACC-AGCCGGCTTTGACACT-GAAGACTTCCTTACCTTTAGTCTG
1 GACTTCTTTACCTTTAGTTTACCTA-TCGACTTTAACCCTAG-AGACTTCCTTACCTTTAGTCTG
* * * * * * *
173666 CCCGTTGGCTCTGTA-TTTGGAGACTTCTTTACCATTAGTCTGCCCATCAGCTTTGACCTTAAA
64 CCCGTCGGCTTTG-ACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
* ** * * * * * * ***
173729 GACTTCTTTACCTTTAGTCTACCCGTTGACTTTGACCCTATAGACTTTCTTGCTTTTAGTCTATT
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
** * * * * *** * *
173794 TATCGGCTTTGACCTTGGGGAATT-CTTCACCGTTATTCTGCTTATCAGCTTTGGCCTTGGA
66 CGTCGGCTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
* * * * * ** * *
173855 GACATT-TTTACCTTTTGTTTGCCTGTCGGCCTTGGCCCTTGAGACTTAC-TA-CTTTCAGTCTG
1 GAC-TTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTT-AGTCTG
* * * * * * * *
173917 CCTGTCGGCTCTAACCTTAGAAACTT-GTTAACCTTTAGTC--CCTCTATC-GACTTTGACCCTA
64 CCCGTCGGCTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCC-C-GTCAG-CTTTGACCTTA
173978 GA
125 GA
* * * * * * * * * *
173980 GACTTAC-TTA-CTATTAGTCTGCTTGTCGACTTTGACCAT-GAAGACCT-CTGGAACTTTAGTT
1 GACTT-CTTTACCT-TTAGTTTACCTATCGACTTTAACCCTAG-AGACTTCCT-TACCTTTAGTC
** * * * * * * * ** * * * *
174041 TGCTTGTCGACTTTGACCCTAGAGA-TTTCTTCTCCTTTAATTTGCCTATCATCCTTGACTTTGG
62 TGCCCGTCGGCTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCCGTCAGCTTTGACCTTAG
174105 A
126 A
* * ** * * * * * * * * *
174106 GACTTCCTTACCTTTAGTCTACCCGTCGGCTTTGACCTTGGAAACATCTTTACTTTTAGTATGCC
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
** * ** * * * * ** * *
174171 TATCAGCTTAAACCTTAGAGACTTCCATGCCTTTAGTTTGCTTGTCGGCTTTGACCTTTGA
66 CGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
* * * * ** * * * *
174232 GACTTCCTTACCTTTACTCTGCCCGTCGATTTTGA-CATAGAAGACTT-CTTAAACTTTAGTCTG
1 GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAG-AGACTTCCTT-ACCTTTAGTCTG
** * * * * * * *
174295 CTTGTCAGCTTTAACCTTGGAGACTTCCTGACCTTTAGTCTG-TCGATCTGCTTTGACCATGGA
64 CCCGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCG-TCAGCTTTGACCTTAGA
* * * * * * *
174358 GACTTCTTTACCTTTAGTCTGCTCGT-T-GGCTTTGACCCTAAATACTTCCTTACCTTTAGTCTA
1 GACTTCTTTACCTTTAGTTTAC-C-TATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTG
** ** * * * *
174421 CCTATTAGCTTTTACCCT-GAGACTTCCTCATTTACCTTTAGTCTGCCTGTCGGCTTTGACAC-T
64 CCCGTCGGCTTTGACCTTGGAGACTT-C-C--TTACCTTTAGTCTGCCCGTCAGCTTTGAC-CTT
174484 AGA
124 AGA
* *
174487 GAATTCCTTACCTTTAGT
1 GACTTCTTTACCTTTAGT
174505 CTACTGACAA
Statistics
Matches: 2075, Mismatches: 583, Indels: 240
0.72 0.20 0.08
Matches are distributed among these distances:
109 2 0.00
110 68 0.03
111 6 0.00
112 1 0.00
113 3 0.00
116 4 0.00
119 1 0.00
120 3 0.00
123 10 0.00
124 82 0.04
125 245 0.12
126 1230 0.59
127 279 0.13
128 4 0.00
129 42 0.02
130 90 0.04
131 5 0.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (126 bp):
GACTTCTTTACCTTTAGTTTACCTATCGACTTTAACCCTAGAGACTTCCTTACCTTTAGTCTGCC
CGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCCGTCAGCTTTGACCTTAGA
Found at i:172637 original size:251 final size:252
Alignment explanation
Indices: 172007--172861 Score: 615
Period size: 251 Copynumber: 3.4 Consensus size: 252
171997 CCTATTGGCT
* * * * * * *
172007 TTGACCTTA-AAACCTTCTTTACCTTTAGTCTGCCCGTCGGTTTTAAAC-TTGGAAACTTCCTGA
1 TTGACCTTAGAGA-CTTCCTTACCTTTAGTCTGCCCGTCGGCTTT-GACGTTAGAGACTTCCTTA
* * * * * *
172070 CCTTTAGTCTGC-CTGTCAACTTTGACCTTAG-AGACTTTCCTTACATTTAGTTTACCTATCGAC
64 CCTTTAGTCTGCTC-GTCAGCTTTGA-CTTAGAAGACATTCTTTACCTTTAGTCTACCTATCG-G
* * * * *
172133 TTTAACCCTAGAGACTTTCTAACCTTTATTCTGCCCGTCGGCACTGACCTTGGAGACTACTTTAC
126 TTTAACACTAGAAACATTCTAACCTTTAGTCTGCCCGTCAGCACTGACCTTGGAGACTACTTTAC
* * * **
172198 CTTTAGTCTACCCTTCAGTTTTAACCTTAGAGACTACCTTACCTTTAGTTTACCAATCGGCA
191 CTTTAGTCTACCCGTCAGCTTTAACCTTAGACACTACCTTACCTTTAGTTTACCAATCAACA
* * ** * *
172260 TTGACCTTGGAGACTTCCTTATCTTTAGTCTGCCTATCGGCTTTGATGCTAGAGACTTCCTTACC
1 TTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCCGTCGGCTTTGACGTTAGAGACTTCCTTACC
** * * * *
172325 TTTAGTCTAATTGTC-GACTTTGACTTTTGAA-ACATT-TGTACCTTTAGTCT-GCTAGTCGGTT
66 TTTAGTCTGCTCGTCAG-CTTTGAC-TTAGAAGACATTCTTTACCTTTAGTCTACCTA-TCGGTT
* * * * * * *
172386 TAACACTAGAAACATTCTCACCTTTAGTCTGCCGGTTAG-ATTTGACCTTGGGGGCTTCTTTACC
128 TAACACTAGAAACATTCTAACCTTTAGTCTGCCCGTCAGCA-CTGACCTTGGAGACTACTTTACC
* * * * * * ** *
172450 TTTAGTTTGCCCGTCAGCTTTGACCTTGGACACGT-CTTTACCTTTAGTTTGCCTGTCAACT
192 TTTAGTCTACCCGTCAGCTTTAACCTTAGACAC-TACCTTACCTTTAGTTTACCAATCAACA
* *
172511 TTGACTTTAGAGACTTCCTTGCCTTTAGTCTGCCCGTCGGCTTTGACGTTAGAGACTTCCTTACC
1 TTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCCGTCGGCTTTGACGTTAGAGACTTCCTTACC
*
172576 TTTAGTCTGCTCGTCAGCTTTGACATAGAAGAC-TTCTTTACCTTTAGTCTACCTATCGGTTTTA
66 TTTAGTCTGCTCGTCAGCTTTGACTTAGAAGACATTCTTTACCTTTAGTCTACCTATCGG-TTTA
* * * * * ** * * **
172640 AC-CTTGGAGAC-TTCCTGACCTTCAGTCTG-CCGATCAACTTTGACCCTAGAGACTTTTTTACC
130 ACAC-TAGAAACATT-CTAACCTTTAGTCTGCCCG-TCAGCACTGACCTTGGAGACTACTTTACC
* * * * * * * * * * * *
172702 TTTAGCCTACTCAT-TGACTTTGACCCTAGAGACTTCCTTACCTTTAGTCTACCTATCAGCT
192 TTTAGTCTACCCGTCAG-CTTTAACCTTAGACACTACCTTACCTTTAGTTTACCAATCAACA
* * * * **** **
172763 TTGACCCTAAAGACTTCCTTACTTACCTTTAGTTTGCCTGTTAATTTTGACACTAGAGACTTCCT
1 TTGACCTTAGAGACTT-C---CTTACCTTTAGTCTGCCCGTCGGCTTTGACGTTAGAGACTTCCT
* * *
172828 TACCTTTAGTCTGCTTGACAACTTTGACATTAGA
62 TACCTTTAGTCTGCTCGTCAGCTTTGAC-TTAGA
172862 GCCTTCCTGA
Statistics
Matches: 468, Mismatches: 109, Indels: 46
0.75 0.17 0.07
Matches are distributed among these distances:
250 7 0.01
251 202 0.43
252 120 0.26
253 72 0.15
254 3 0.01
256 60 0.13
257 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (252 bp):
TTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCCGTCGGCTTTGACGTTAGAGACTTCCTTACC
TTTAGTCTGCTCGTCAGCTTTGACTTAGAAGACATTCTTTACCTTTAGTCTACCTATCGGTTTAA
CACTAGAAACATTCTAACCTTTAGTCTGCCCGTCAGCACTGACCTTGGAGACTACTTTACCTTTA
GTCTACCCGTCAGCTTTAACCTTAGACACTACCTTACCTTTAGTTTACCAATCAACA
Found at i:172992 original size:42 final size:42
Alignment explanation
Indices: 172928--174506 Score: 774
Period size: 42 Copynumber: 37.5 Consensus size: 42
172918 TCTGATCTTC
* * * * *
172928 GAGAGTTCCTTACCATTAGTTTGCCCGTCGGCTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * *
172970 GCGACTTCCTTACCTTTAGTTTGCTTGTCGGCTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * *** * * *
173012 GAGACTTCCTGACTTTTAGTCTATGTATTGACTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * *
173054 GAAAACTTCTTTACGTTTAGTTTGCTTGTTGACTTTGACCCTA
1 G-AGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
173097 AAGGCTTCCTTACCTTTAGTTTGCCTATCGGCTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
*** * * ** *
173139 GTTCCTTTTTTACCTTTAGTTTG-CTAGTCATCTTTGACCTTA
1 GAGACTTCTTTACCTTTAGTCTGCCT-GTCGGCTTTGACCCTA
* * *** * *
173181 GAGACTT-TTTCACCTTTTGTCTGCTTGTCAAATTTAACACTA
1 GAGACTTCTTT-ACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
173223 AAGACTTCTTTACTTTTAGTTTGCTTGTCGACTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
173265 GAAACTTCCTTACCTTTAGTCTGCTTGTCAGCTTTGACCCTG
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * ** ** * *
173307 GAAACTTCCTAACCTTTAGTCTACCAATCGAATTTGACCTTG
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
** * * *
173349 GAGACTTCTTTACAATTAGTCTACCTATCGACTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * **
173391 GAGACATCCTTACTTTTATTCTGCCCGTCGATTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* ** *
173433 GAGACTTCTTTACCTTTAGTCT-ACTCGTCGATTTTGACACTA
1 GAGACTTCTTTACCTTTAGTCTGCCT-GTCGGCTTTGACCCTA
* * * ** * *
173475 GTGACTTATTTACCTTTAGTCTACCCATCAGCATTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
173517 GAGACTTCTTTACCTTTAGTCTGTCCAT-T-GGCTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTG-CC-TGTCGGCTTTGACCCTA
* * * *
173559 -AGGACTTTTTTACCTTTAGTCTGCTTGTCAGCTTTGA-CCTT
1 GA-GACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * * *
173600 GAAAACTTCATTACCTTTAGTTTACCAGCCGGCTTTGACACT-
1 G-AGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * ** *
173642 GAAGACTTCCTTACCTTTAGTCTGCCCGTTGGCTCTGTA-TTTG
1 G-AGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTG-ACCCTA
* ** * *
173685 GAGACTTCTTTACCATTAGTCTGCCCATCAGCTTTGACCTTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
173727 AAGACTTCTTTACCTTTAGTCTACCCGTTGACTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * *** * * *
173769 TAGACTT-TCTTGCTTTTAGTCTATTTATCGGCTTTGACCTTG
1 GAGACTTCT-TTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * * * * * * *
173811 GGGAATTCTTCACCGTTATTCTGCTTATCAGCTTTGGCCTTG
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
173853 GAGACATT-TTTACCTTTTGTTTGCCTGTCGGCCTTGGCCCTT
1 GAGAC-TTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * *
173895 GAGACTTAC--TA-CTTTCAGTCTGCCTGTCGGCTCTAACCTTA
1 GAGACTT-CTTTACCTTT-AGTCTGCCTGTCGGCTTTGACCCTA
* * * * * *
173936 GAAACTTGTTAACCTTTAGTC-CCTCTATCGACTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGC-CTGTCGGCTTTGACCCTA
* * *
173978 GAGACTTAC-TTA-CTATTAGTCTGCTTGTCGACTTTGACCAT-
1 GAGACTT-CTTTACCT-TTAGTCTGCCTGTCGGCTTTGACCCTA
* ** * * * *
174019 GAAGACCTCTGGAACTTTAGTTTGCTTGTCGACTTTGACCCTA
1 G-AGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * ** * ** *
174062 GAGATTTCTTCT-CCTTTAATTTGCCTATCATCCTTGACTTTG
1 GAGACTTCTT-TACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
174104 GAGACTTCCTTACCTTTAGTCTACCCGTCGGCTTTGACCTTG
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * * ** *
174146 GAAACATCTTTACTTTTAGTATGCCTATCAGCTTAAACCTTA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
** * * * * *
174188 GAGACTTCCATGCCTTTAGTTTGCTTGTCGGCTTTGACCTTT
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * ** *
174230 GAGACTTCCTTACCTTTACTCTGCCCGTCGATTTTGA-CATA
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * * *
174271 GAAGACTTCTTAAACTTTAGTCTGCTTGTCAGCTTTAACCTTG
1 G-AGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * *
174314 GAGACTTCCTGACCTTTAGTCTGTC-GATCTGCTTTGACCATG
1 GAGACTTCTTTACCTTTAGTCTGCCTG-TCGGCTTTGACCCTA
*
174356 GAGACTTCTTTACCTTTAGTCTG-CTCGTTGGCTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCCT-GTCGGCTTTGACCCTA
* * * * * ** *
174398 AATACTTCCTTACCTTTAGTCTACCTATTAGCTTTTACCCT-
1 GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
*
174439 GAGACTTCCTCATTTACCTTTAGTCTGCCTGTCGGCTTTGACACTA
1 GAGAC-T--TC-TTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* *
174485 GAGAATTCCTTACCTTTAGTCT
1 GAGACTTCTTTACCTTTAGTCT
174507 ACTGACAACT
Statistics
Matches: 1160, Mismatches: 329, Indels: 96
0.73 0.21 0.06
Matches are distributed among these distances:
40 5 0.00
41 55 0.05
42 1003 0.86
43 64 0.06
44 2 0.00
45 27 0.02
46 4 0.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (42 bp):
GAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTA
Found at i:174531 original size:87 final size:87
Alignment explanation
Indices: 174364--174532 Score: 191
Period size: 87 Copynumber: 1.9 Consensus size: 87
174354 TGGAGACTTC
* * * * * *
174364 TTTACCTTTAGTCTGCTCGTTGGCTTTGACCCTAAATACTTCCTTACCTTTAGTCTACCTATTAG
1 TTTACCTTTAGTCTGCTCGTCGGCTTTGACACTAAAGAATTCCTTACCTTTAGTCTACCTATCAA
* * *
174429 CTTTTACCCTGAGACTTCCTCA
66 CTTTGACACTAAGACTTCCTCA
*
174451 TTTACCTTTAGTCTGC-CTGTCGGCTTTGACACTAGAGAATTCCTTACCTTTAGTCTA-CTGA-C
1 TTTACCTTTAGTCTGCTC-GTCGGCTTTGACACTAAAGAATTCCTTACCTTTAGTCTACCT-ATC
*
174513 AACTTTGACATTAAAGACTT
64 AACTTTGACACT-AAGACTT
174533 GCTGATTTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
86 11 0.16
87 57 0.84
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.40
Consensus pattern (87 bp):
TTTACCTTTAGTCTGCTCGTCGGCTTTGACACTAAAGAATTCCTTACCTTTAGTCTACCTATCAA
CTTTGACACTAAGACTTCCTCA
Found at i:174839 original size:127 final size:127
Alignment explanation
Indices: 174619--174909 Score: 320
Period size: 127 Copynumber: 2.3 Consensus size: 127
174609 TTAGTTTTCC
* * * * * *
174619 TGTCGGCTTTAACCTTGGTGACTTCCTTACTTTTAG-TCTGCTTTTCGGCTTTAACCCTAGAGAC
1 TGTCGACTTTGACCTTGGAGACTTCCTTACCTTTAGTTCTGCTTGTCAGCTTTAACCCTAGAGAC
** * * * * * ** *
174683 TTCCTGACTTTTAGTCTGCCTGTCGGCTTTGACCCTAGAAAACTTCCTTACCTTT-GGTTTGCT
66 TTCCCAACCTTTAGTCTACCTATCAGCTTTGA-CCTAGAAAACATCCTTACCTTTAGCCTAG-T
* *
174746 TGTCGACTTTGACCTTGGAGACTACCTTACCTTTAGTTC-GCTTGTCAGCTTTAACCTTAGAGAC
1 TGTCGACTTTGACCTTGGAGACTTCCTTACCTTTAGTTCTGCTTGTCAGCTTTAACCCTAGAGAC
* * * *
174810 TTCCCAACCTTTAGTGTACCTATCAGCTTTGACCTTGGAGACATCCTTACCTTTAGCCTAGT
66 TTCCCAACCTTTAGTCTACCTATCAGCTTTGACCTAGAAAACATCCTTACCTTTAGCCTAGT
*
174872 TGTCGACTTTGATCC-TGTAGACTTCCTTACCTTTAGTT
1 TGTCGACTTTGA-CCTTGGAGACTTCCTTACCTTTAGTT
174910 TGCCTATCGG
Statistics
Matches: 137, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
126 52 0.38
127 83 0.61
128 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (127 bp):
TGTCGACTTTGACCTTGGAGACTTCCTTACCTTTAGTTCTGCTTGTCAGCTTTAACCCTAGAGAC
TTCCCAACCTTTAGTCTACCTATCAGCTTTGACCTAGAAAACATCCTTACCTTTAGCCTAGT
Found at i:175639 original size:42 final size:41
Alignment explanation
Indices: 175592--175692 Score: 116
Period size: 41 Copynumber: 2.4 Consensus size: 41
175582 CTTGTCAGCT
*
175592 TTGACCTTGGAAACACTTTCACCTTTT-GTCTGCATGTCGACC
1 TTGACCTTGGAAA-ACTTTCAACTTTTAGTCTGC-TGTCGACC
* * * *
175634 TTGACCCTAG-AGACTTCTCAACTTTTAGTCTGCTGTCGACT
1 TTGACCTTGGAAAACTT-TCAACTTTTAGTCTGCTGTCGACC
175675 TTGACCTTGGAAAACTTT
1 TTGACCTTGGAAAACTTT
175693 TTTACCTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
40 4 0.08
41 25 0.52
42 19 0.40
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.37
Consensus pattern (41 bp):
TTGACCTTGGAAAACTTTCAACTTTTAGTCTGCTGTCGACC
Found at i:175734 original size:42 final size:42
Alignment explanation
Indices: 174603--175867 Score: 450
Period size: 42 Copynumber: 30.2 Consensus size: 42
174593 GGAAAGTTTT
* * * * * * *
174603 TTACCATTAGTTTTCCTGTCGGCTTTAACCTTGGTGACTTCC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * *
174645 TTACTTTTAGTCTGCTTTTCGGCTTTAACCCTAGAGACTTCC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * *
174687 TGACTTTTAGTCTGCCTGTCGGCTTTGACCCTAGAAAACTTCC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCT-GGAGACTTCC
* * * * * * *
174730 TTACCTTTGGTTTGCTTGTCGACTTTGACCTTGGAGACTACC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * *
174772 TTACCTTTAGT-TCGCTTGTCAGCTTTAACCTTAGAGACTTCC
1 TTACCTTTAGTCT-GCCTATCGGCTTTGACCCTGGAGACTTCC
** * * * * *
174814 CAACCTTTAGTGTACCTATCAGCTTTGACCTTGGAGACATCC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * *
174856 TTACCTTTAGCCTAG-TTGTCGACTTTGATCCTGTAGACTTCC
1 TTACCTTTAGTCT-GCCTATCGGCTTTGACCCTGGAGACTTCC
* ** ** *
174898 TTACCTTTAGTTTGCCTATCGGCTTTGACCCCAGTTA-TTTC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
** * ** * * **
174939 TTCACCTTTAGTCTATCTGTCAACTTTAACCTTGGAGACTTTT
1 TT-ACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * **
174982 TTACTTTTTGTCTGCCTATCGGCTTTGACACTAGAGACAACC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * *
175024 -TAACTTTGAGCCTGCCTGTCAGCTTTGACCCTAGAAACTTCC
1 TTACCTTT-AGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * *
175066 TTACCTTTAGTCTGCCTATCGGTTTTAACCTTGGAAACTT-C
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * *
175107 TTGACTTTTAGTGTGCCTGA-CGGCTTTGACCTTGGGGACTTCC
1 TT-ACCTTTAGTCTGCCT-ATCGGCTTTGACCCTGGAGACTTCC
* * * * * * *
175150 TTACATTTAG-CTTACCTATTGACTTTGACCTTGGAGATTTCT
1 TTACCTTTAGTC-TGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * * *
175192 TTTCCTTTA-TCCTTCCTGTCAGCATT-ATCCCTGGAGACTACT
1 TTACCTTTAGT-CTGCCTATCGGCTTTGA-CCCTGGAGACTTCC
* * ** * * * * *
175234 TTGCCTTTAATCTATCTTTCGGTTTTGACCTTAGAGACTTCT
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * ** * *
175276 TTACCTTTAGTCTACCCATTAGCTTTGACCTTGGAGATTTCC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * **
175318 TTACCTTTAGCCTGCCTATTGGCTTTGACGCTAGAGACTTTT
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * *
175360 TTACCTTTAGTCTGCTTATCTGCTTT-ATCCTTTGAAACTTCT
1 TTACCTTTAGTCTGCCTATCGGCTTTGA-CCCTGGAGACTTCC
* * * *
175402 TTACATTTAGTCTGCC-AGTC-GATTTGACACTGGAGACTTTC
1 TTACCTTTAGTCTGCCTA-TCGGCTTTGACCCTGGAGACTTCC
* * *** * * **
175443 TTACCTTAAGT-TCGCCGATCAAATTTGACCTTGGAGATTTTT
1 TTACCTTTAGTCT-GCCTATCGGCTTTGACCCTGGAGACTTCC
* ** * * ** ** *
175485 TTACCTTGAGTCAACCCAACAACTTTGACCCTAAAGACTTTC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * *
175527 TTACCTTTAGTCTACCTATTGGGTTTGACCTTGG-GAATT-C
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * * * * *
175567 TGTGCCTTTAGTTTGCTTGTCAGCTTTGACCTTGGAAAC-ACT
1 T-TACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * *
175609 TTCACCTTTTGTCTGCATGTCGACCTTGACCCTAGAGACTT-C
1 TT-ACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * * * * **
175651 TCAACTTTTAGTCTG-CTGTCGACTTTGACCTTGGAAAACTTTT
1 T-TACCTTTAGTCTGCCTATCGGCTTTGACCCTGG-AGACTTCC
* * *
175694 TTACCTTTAGTCTGTCTATCGGCTTTGACCCTAGAGACTTTC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * ** * ** * ** *
175736 TTACCATTACTTTATCTGTCAACTTTGACCATAAAAACTT-C
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
* * * *
175777 TAGACCATTT-GTTTGCCTATCGACTTTGACCTTGGAGACCTT--
1 T-TACC-TTTAGTCTGCCTATCGGCTTTGACCCTGGAGA-CTTCC
* * * * *
175819 TAACCTTTAGTCTACCTATCAGCTTTGGCCTTGGAGACTTCC
1 TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
175861 TTACCTT
1 TTACCTT
175868 GAGTTTGTCC
Statistics
Matches: 898, Mismatches: 284, Indels: 82
0.71 0.22 0.06
Matches are distributed among these distances:
40 9 0.01
41 118 0.13
42 699 0.78
43 72 0.08
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (42 bp):
TTACCTTTAGTCTGCCTATCGGCTTTGACCCTGGAGACTTCC
Found at i:179158 original size:20 final size:20
Alignment explanation
Indices: 179133--179299 Score: 104
Period size: 20 Copynumber: 7.8 Consensus size: 20
179123 GTAAAAAGAT
*
179133 AGAATGTATCGATATATTGA
1 AGAATGTATCGATACATTGA
*
179153 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
179173 TA-CATGTATGGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
179193 AAAATGTATCGATATATCTGGGTAAAA
1 AGAATGTATCGATACAT-T--G----A
*
179220 AGACAAAATGTATCGATACATTAA
1 AG----AATGTATCGATACATTGA
*
179244 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
179264 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
179284 AAAATGTATCAATACA
1 AGAATGTATCGATACA
179300 CCTGGGTAAA
Statistics
Matches: 116, Mismatches: 16, Indels: 30
0.72 0.10 0.19
Matches are distributed among these distances:
19 2 0.02
20 90 0.78
21 3 0.03
23 1 0.01
24 3 0.03
27 2 0.02
30 1 0.01
31 14 0.12
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.31
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:179160 original size:51 final size:49
Alignment explanation
Indices: 179082--179260 Score: 153
Period size: 51 Copynumber: 3.8 Consensus size: 49
179072 TAATCTTAAC
**
179082 TAAATGTATCGATACATT-ATTCAATGTATCGATACATCTAGGTAAAAAGA
1 TAAATGTATCGATACATTGA-AGAATGTATCGATACATCT-GGTAAAAAGA
* *
179132 TAGAATGTATCGATATATTGAAGAATGTATCGATACA--T--T-----CA
1 TA-AATGTATCGATACATTGAAGAATGTATCGATACATCTGGTAAAAAGA
* * * *
179173 TACATGTATGGATACATTGAAAAATGTATCGATATATCTGGGTAAAAAGA
1 TAAATGTATCGATACATTGAAGAATGTATCGATACATCT-GGTAAAAAGA
* *
179223 CAAAATGTATCGATACATTAAAGAATGTATCGATACAT
1 -TAAATGTATCGATACATTGAAGAATGTATCGATACAT
179261 TCATACATGT
Statistics
Matches: 100, Mismatches: 16, Indels: 25
0.71 0.11 0.18
Matches are distributed among these distances:
40 29 0.29
41 3 0.03
42 1 0.01
45 1 0.01
46 1 0.01
49 1 0.01
50 3 0.03
51 60 0.60
52 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (49 bp):
TAAATGTATCGATACATTGAAGAATGTATCGATACATCTGGTAAAAAGA
Found at i:179247 original size:91 final size:91
Alignment explanation
Indices: 179085--179311 Score: 339
Period size: 91 Copynumber: 2.5 Consensus size: 91
179075 TCTTAACTAA
** * * * *
179085 ATGTATCGATACATT-ATTCAATGTATCGATACATCTAGGTAAAAAGATAGAATGTATCGATATA
1 ATGTATCGATACATTGA-AAAATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACA
*
179149 TTGAAGAATGTATCGATACATTCATAC
65 TTAAAGAATGTATCGATACATTCATAC
* *
179176 ATGTATGGATACATTGAAAAATGTATCGATATATCTGGGTAAAAAGACAAAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACAT
179241 TAAAGAATGTATCGATACATTCATAC
66 TAAAGAATGTATCGATACATTCATAC
* *
179267 ATGTATCGATACATTGAAAAATGTATCAATACACCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
179312 TGTGACTTTT
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
91 121 0.99
92 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACAT
TAAAGAATGTATCGATACATTCATAC
Found at i:179901 original size:42 final size:42
Alignment explanation
Indices: 179842--181828 Score: 682
Period size: 42 Copynumber: 47.6 Consensus size: 42
179832 ACAACCTAGA
* * *
179842 AGACTTCTTTACTTTTAGTTTGCATGTCAGCTTTGACCTTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* ** **
179884 AGACTTTTTTACCTTTAGTCTGCCCATTGGCTTTGACC-TAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
*** * * *
179925 AAGACTTCTTTACCTTTAGTCTATTTATCAGCTTTCACCTTGG
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * *
179968 AGACTT-TCTTACCTTTAGTCTACCGGTCAACTTTGACCATAG
1 AGACTTCT-TTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* ** *
180010 AGATTTCTTTA-CTTTAAGTCTG-CTCGTTGGCTTTGACCCTAG
1 AGACTTCTTTACCTTT-AGTCTGCCT-GTCAGCTTTGACCTTAG
* * * * *
180052 AGACTT-TCTCACCCTTAGAT-TGCCTGT-TGACTTAGACCCT-G
1 AGACTTCT-TTACCTTTAG-TCTGCCTGTCAG-CTTTGACCTTAG
* * * * * * * * *
180093 ATGACTTCCTGACTTTTAATCCGCTTGTC-GACTGTGACCCTAA
1 A-GACTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAG
* * * * ** **
180136 AGAACTACCTTACCTTTAGTTTGCTTGTTGGCTTTGACAAT-G
1 AG-ACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * *
180178 AAGACTTCTTGACCTTTAGTTTGCCTGTCGGTTTTGACCTTAG
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * *
180221 AGACTTCTTTACCTTTAGTCAGCCTGTTAGCTTTGACTTTGG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * * * *
180263 AGACTTCTTTACCATTACTCTGCTTGTTAGCCTTAACCTTGG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * *
180305 AGACTTCCTTACCATTAGTCTGCCCGTCAGTTTTGACCTT-G
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * * *
180346 TAGACATCTTTACTTTTAATCTGCTTGTTAGCTTGGACCTT-G
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * * *
180388 AAGACTTCCTTGCCTTTAGTTTGCCTATCGGCTTTGACCATAG
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * ** ** *
180431 AGACTTCCTTACCTTTAGTCAGCCCATTGGCTTTGA-CATAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * *
180472 AAGACTTCTTTACCTTTAGTTTGCCCGTCGGCTTTGA-CATAG
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * *
180514 AAGACTTCTTTACCTTTATTCTACCTGTCAGCTTTGACCTTGG
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * ** *
180557 AGACTTCCTTGCCTTTAGTTTGCCCATCGGCTTTGACCTTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * **
180599 AGACTTCCTTACCTTTGTGTCTACCCATC-GACTTTGACAC--AG
1 AGACTTCTTTACCTTT-AGTCTGCCTGTCAG-CTTTGAC-CTTAG
* * * *
180641 AAGACTTTTTTACCTTTCGTCTGCCTGTCGGCTTTGACCTTGG
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * * * *
180684 AGACTTCCTGACCTTTAGTCTGCCGGTCATCTTTAACCCTAA
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
*
180726 AGACTTCTTTAGCTTTAGTCTG-CTCGTTC-GCTTTGACCTTAG
1 AGACTTCTTTACCTTTAGTCTGCCT-G-TCAGCTTTGACCTTAG
* * * *
180768 AGACTTC-TTACCTTTAGTCTACCTATC-GACTTTTACCTTGG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAG
* * ** *
180809 AGACTTCCTTACTTACCTTTAGACTGCTTGTTGGCTTTGACAC-TAA
1 AGACTT-C-T--TTACCTTTAGTCTGCCTGTCAGCTTTGAC-CTTAG
* * * * ** *
180855 AAACTTCCTTACTTTTAGTCTACCTCACAACTTTGACCTTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
** ** ** **
180897 AGACTT-TTTGATTTTTAGTCTATCTGTTGGCTTCAACCCTT-G
1 AGACTTCTTT-ACCTTTAGTCTGCCTGTCAGCTTTGA-CCTTAG
* * * * **
180939 AGACTTCCTGA-CTTT--TTTGACCT-TGGAGAGTT--CCTT--
1 AGACTTCTTTACCTTTAGTCTG-CCTGT-CAGCTTTGACCTTAG
* ** *
180975 --AC--C---A--TTT-GTTTGCTAGTCAGCTTTGACCCTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * ** * *
181007 -GAACTTCCTTACCTTTAGTCTGCTTGTTGGCTTTGACCCTAA
1 AG-ACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * **
181049 AGACTTCCTAACTTTTAGTCTGCTTGTTGGCTTTGATCC-TAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGA-CCTTAG
* * * * * *
181091 AAAACTTTTTTACCTTTAGTTTGCTTGTC-GACTTTGACCCTGG
1 -AGACTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAG
* * * * *
181134 AGACTACCTTACCTTTAGTCTGCGTGTCGGCTTTAACCTTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * *
181176 AGACTTCCTAACCTTTAGTCTACCTGTTAGCTTTGACCTTGG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * *
181218 AGACTTCCTTACCTTTAGTCTAG-TTGTCGGCTTTGATCCTGTA-
1 AGACTTCTTTACCTTTAGTCT-GCCTGTCAGCTTTGA-CCT-TAG
* * *
181261 A-ACTTCCTTACCTTTAGTCTAG-TTGTCGGCTTTGATCCTGTA-
1 AGACTTCTTTACCTTTAGTCT-GCCTGTCAGCTTTGA-CCT-TAG
* * * * *
181303 A-ACTTCCTTACCATTAGTTTGCCTATC-GACTTTGACCCTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAG
** *** * *
181344 TTACTTCTTTACCTTTAGTCCATCTGTCAGCTTTAACCTTGG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * * *
181386 AGACTT-TTTCACTTTTTGGCTACCTGTCAGTTTTGACAC-TAA
1 AGACTTCTTT-ACCTTTAGTCTGCCTGTCAGCTTTGAC-CTTAG
* * * * * * * * *
181428 ACACTTCCTAACTTTTAATCGGCCTATCGGCTTTAACCCTT-G
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGA-CCTTAG
* * * * * * * * * *
181470 AAACCTCCTTACCTTTAGTCTACCTATCGGTTTTAAGCTTGG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * * * *
181512 AAACTTCCTGACCTTTAGTTTACCTGTCGGCTTTGACCTTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * ** * * * *
181554 AGACTTCCTTACATTTAGTCTATCTAT-TGACTTTTACCCTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAG
* * ** * * * *
181596 AGACTT-TCTTACCTTTATTCTACCCATCGGCATTGACCCTGG
1 AGACTTCT-TTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
** * * *
181638 AGACTAGTTTACCTTTTGTCTACCCT-TC-GATTTTGACCTTAG
1 AGACTTCTTTACCTTTAGTCT-GCCTGTCAG-CTTTGACCTTAG
* * * ** ** *
181680 AGACTT-TTTTCCTTTAGTTTACCCATTGGCTTTGACCCTAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
* * * *
181721 AGACTTCCTTGCCTTTAGTCTGCCTATC-GACTTTGACGC-CAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGAC-CTTAG
* * * * *
181763 AAACTTCCTTACCTTTAGTTTACCTATC-GACTTTGACGC-TAG
1 AGACTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGAC-CTTAG
* *
181805 AGACTTCTTTACTTTTAGTTTGCC
1 AGACTTCTTTACCTTTAGTCTGCC
181829 AGTTGTAGAC
Statistics
Matches: 1481, Mismatches: 369, Indels: 190
0.73 0.18 0.09
Matches are distributed among these distances:
28 8 0.01
29 6 0.00
30 3 0.00
32 1 0.00
34 4 0.00
36 1 0.00
37 4 0.00
39 4 0.00
40 11 0.01
41 100 0.07
42 1177 0.79
43 129 0.09
44 3 0.00
45 1 0.00
46 27 0.02
47 2 0.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (42 bp):
AGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAG
Found at i:180687 original size:127 final size:126
Alignment explanation
Indices: 180387--180818 Score: 403
Period size: 127 Copynumber: 3.4 Consensus size: 126
180377 CTTGGACCTT
* * * * * * * *
180387 GAAGACTTCCTTGCCTTTAGTTTGCCTATCGGCTTTGACCATAGAGACTTCCTTACCTTTAGTCA
1 GAAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTGCCTTTAGTCT
* * * * * *
180452 GCCCATTGGCTTTGACATAGAAGACTTCTTTACCTTTAGTTTGCCCGTCGGCTTTGACATA
66 GCCCATCGGCTTTGACATAGAAGACTTCCTTACCTTTAGTTTACCCATCGACTTTGACACA
* * * *
180513 GAAGACTTCTTTACCTTTATTCTACCTGTCAGCTTTGACCTTGGAGACTTCCTTGCCTTTAGTTT
1 GAAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTGCCTTTAGTCT
*
180578 GCCCATCGGCTTTGACCTTAG-AGACTTCCTTACCTTT-GTGTCTACCCATCGACTTTGACACA
66 GCCCATCGGCTTTGA-CATAGAAGACTTCCTTACCTTTAGT-T-TACCCATCGACTTTGACACA
* *
180640 GAAGACTTTTTTACCTTTCGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCC-TGACCTTTAGTC
1 GAAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTG-CCTTTAGTC
** ** * * * * * * **
180704 TGCCGGTCATCTTTAACCCTA-AAGACTTCTTTAGCTTTAGTCTGCTCGTTCG-CTTTGAC-CTT
65 TGCCCATCGGCTTTGA-CATAGAAGACTTCCTTACCTTTAGTTTAC-CCATCGACTTTGACAC--
180766 A
126 A
* * * *
180767 G-AGACTTC-TTACCTTTAGTCTACCTATCGACTTTTACCTTGGAGACTTCCTT
1 GAAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTT
180819 ACTTACCTTT
Statistics
Matches: 253, Mismatches: 43, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
125 40 0.16
126 101 0.40
127 110 0.43
128 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.38
Consensus pattern (126 bp):
GAAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTGCCTTTAGTCT
GCCCATCGGCTTTGACATAGAAGACTTCCTTACCTTTAGTTTACCCATCGACTTTGACACA
Found at i:180732 original size:169 final size:168
Alignment explanation
Indices: 180388--180800 Score: 510
Period size: 169 Copynumber: 2.5 Consensus size: 168
180378 TTGGACCTTG
* *
180388 AAGACTTCCTTGCCTTTAGTTTGCCTATCGGCTTTGACCATAGAGACTTCCTTACCTTTAGTC-A
1 AAGACTTCCTTGCCTTTAGTTTGCCCATCGGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTA
* * * *
180452 GCCCATTGGCTTTGACATAGAAGACTTCTTTACCTTTAGTTTGCCCGTCGGCTTTGACATAGAAG
66 -CCCATCGACTTTGACACAGAAGACTTCTTTACCTTTAGTCTGCCCGTCGGCTTTGACATAGAAG
* * * * * * *
180517 ACTTCTTTACCTTTATTCTACCTGTCAGCTTTGACCTTG
130 ACTTCCTGACCTTTAGTCTACCGGTCAGCTTTAACCCTA
* *
180556 GAGACTTCCTTGCCTTTAGTTTGCCCATCGGCTTTGACCTTAGAGACTTCCTTACCTTTGTGTCT
1 AAGACTTCCTTGCCTTTAGTTTGCCCATCGGCTTTGACCTTAGAGACTTCCTTACCTTT-AGTCT
* * * * * *
180621 ACCCATCGACTTTGACACAGAAGACTTTTTTACCTTTCGTCTGCCTGTCGGCTTTGACCTTGGAG
65 ACCCATCGACTTTGACACAGAAGACTTCTTTACCTTTAGTCTGCCCGTCGGCTTTGACATAGAAG
* *
180686 ACTTCCTGACCTTTAGTCTGCCGGTCATCTTTAACCCTA
130 ACTTCCTGACCTTTAGTCTACCGGTCAGCTTTAACCCTA
* * **
180725 AAGACTTCTTTAG-CTTTAGTCTGCTCGTTC-GCTTTGACCTTAGAGACTT-CTTACCTTTAGTC
1 AAGACTTCCTT-GCCTTTAGTTTGC-CCATCGGCTTTGACCTTAGAGACTTCCTTACCTTTAGTC
*
180787 TACCTATCGACTTT
64 TACCCATCGACTTT
180801 TACCTTGGAG
Statistics
Matches: 211, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
167 16 0.08
168 65 0.31
169 125 0.59
170 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.38
Consensus pattern (168 bp):
AAGACTTCCTTGCCTTTAGTTTGCCCATCGGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTA
CCCATCGACTTTGACACAGAAGACTTCTTTACCTTTAGTCTGCCCGTCGGCTTTGACATAGAAGA
CTTCCTGACCTTTAGTCTACCGGTCAGCTTTAACCCTA
Found at i:180894 original size:88 final size:87
Alignment explanation
Indices: 180738--180902 Score: 208
Period size: 88 Copynumber: 1.9 Consensus size: 87
180728 ACTTCTTTAG
* * * * *
180738 CTTTAGTCTGCTCGTTCGCTTTGACCTTAGAGACTTCTTACCTTTAGTCTACCTATCGACTTTTA
1 CTTTAGACTGCTCGTTCGCTTTGACCTTAAAAACTTCTTACCTTTAGTCTACCTATCAACTTTGA
*
180803 CCTTGGAGACTTCCTTACTTAC
66 CCTTAGAGACTTCCTTACTTAC
* * *
180825 CTTTAGACTGCTTGTTGGCTTTGACAC-TAAAAACTTCCTTACTTTTAGTCTACCTCA-CAACTT
1 CTTTAGACTGCTCGTTCGCTTTGAC-CTTAAAAACTT-CTTACCTTTAGTCTACCT-ATCAACTT
180888 TGACCTTAGAGACTT
63 TGACCTTAGAGACTT
180903 TTTGATTTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
87 29 0.44
88 36 0.55
89 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.40
Consensus pattern (87 bp):
CTTTAGACTGCTCGTTCGCTTTGACCTTAAAAACTTCTTACCTTTAGTCTACCTATCAACTTTGA
CCTTAGAGACTTCCTTACTTAC
Found at i:181209 original size:127 final size:125
Alignment explanation
Indices: 180969--181293 Score: 370
Period size: 127 Copynumber: 2.6 Consensus size: 125
180959 CCTTGGAGAG
*
180969 TTCCTTACCATTT-GTTTGCTAGTC-AGCTTTGACCCTAGGAACTTCCTTACCTTTAGTCTGCTT
1 TTCCTTACC-TTTAGTTTGCTTGTCGA-CTTTGACCCT-GGAACTTCCTTACCTTTAGTCTGCTT
* * * * * *
181032 GTTGGCTTTGACCCTAAAGACTTCCTAACTTTTAGTCTGCTTGTTGGCTTTGATCCTAGAAAAC
63 GTCGGCTTTAACCCTAAAGACTTCCTAACCTTTAGTCTACCTGTTAGCTTTGA-CCTAGAAAAC
** * *
181096 TTTTTTACCTTTAGTTTGCTTGTCGACTTTGACCCTGGAGACTACCTTACCTTTAGTCTGCGTGT
1 TTCCTTACCTTTAGTTTGCTTGTCGACTTTGACCCTGGA-ACTTCCTTACCTTTAGTCTGCTTGT
* * * * *
181161 CGGCTTTAACCTTAGAGACTTCCTAACCTTTAGTCTACCTGTTAGCTTTGACCTTGGAGAC
65 CGGCTTTAACCCTAAAGACTTCCTAACCTTTAGTCTACCTGTTAGCTTTGACCTAGAAAAC
* * * *
181222 TTCCTTACCTTTAGTCTAG-TTGTCGGCTTTGATCCTGTAAACTTCCTTACCTTTAGTCTAG-TT
1 TTCCTTACCTTTAGT-TTGCTTGTCGACTTTGACCCTG-GAACTTCCTTACCTTTAGTCT-GCTT
181285 GTCGGCTTT
63 GTCGGCTTT
181294 GATCCTGTAA
Statistics
Matches: 168, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
126 70 0.42
127 97 0.58
128 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (125 bp):
TTCCTTACCTTTAGTTTGCTTGTCGACTTTGACCCTGGAACTTCCTTACCTTTAGTCTGCTTGTC
GGCTTTAACCCTAAAGACTTCCTAACCTTTAGTCTACCTGTTAGCTTTGACCTAGAAAAC
Found at i:182418 original size:20 final size:20
Alignment explanation
Indices: 182393--182449 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
182383 TTTTACCCAG
*
182393 ATGTATCGATACATTCTTTA
1 ATGTATCGATACATTCTTGA
*
182413 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTGA
182433 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
182450 GTTTTTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTGA
Found at i:182458 original size:71 final size:71
Alignment explanation
Indices: 182342--182497 Score: 244
Period size: 71 Copynumber: 2.2 Consensus size: 71
182332 AAGTACCCAG
*
182342 ATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCCTTTTACCCAGATGTATCGATACAT
1 ATGTATCGATACATTCATCAATGTATCGATACATTCTGTCCTTTTACCCAGATGTATCGATACAT
182407 TCTTT-A
66 T-TTTCA
* **
182413 ATGTATCGATACATGT-ATGAATGTATCGATACATTCTGTTTTTTTACCCAGATGTATCGATACA
1 ATGTATCGATACAT-TCATCAATGTATCGATACATTCTGTCCTTTTACCCAGATGTATCGATACA
182477 TTTTTCA
65 TTTTTCA
182484 ATGTATCGATACAT
1 ATGTATCGATACAT
182498 CTAGTTAAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
70 3 0.04
71 75 0.95
72 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (71 bp):
ATGTATCGATACATTCATCAATGTATCGATACATTCTGTCCTTTTACCCAGATGTATCGATACAT
TTTTCA
Found at i:185728 original size:17 final size:17
Alignment explanation
Indices: 185702--185735 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
185692 GTTGGGTTAG
*
185702 ACCTTTGAGACTTTCTT
1 ACCTTGGAGACTTTCTT
185719 ACCTTGGAGACTTTCTT
1 ACCTTGGAGACTTTCTT
185736 GCCTATTGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.44
Consensus pattern (17 bp):
ACCTTGGAGACTTTCTT
Found at i:185817 original size:42 final size:42
Alignment explanation
Indices: 185771--185862 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
185761 TTCCTTACCA
* *
185771 TTAGTCTACTTATCGACTTTGACCATGAAGACTTATTGACCT
1 TTAGTCTACCTATCAACTTTGACCATGAAGACTTATTGACCT
* * * ** * *
185813 TTAGTTTGCCTGTCAACTTTGACTTTGGAGACTTATTTACCT
1 TTAGTCTACCTATCAACTTTGACCATGAAGACTTATTGACCT
185855 TTAGTCTA
1 TTAGTCTA
185863 TCTCTCAGCG
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (42 bp):
TTAGTCTACCTATCAACTTTGACCATGAAGACTTATTGACCT
Found at i:185959 original size:42 final size:42
Alignment explanation
Indices: 185913--186004 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
185903 CGCCCGTCGA
* *
185913 CTTTGACCTTAGAGACTTCCTAACCTTTAATCTACCTATTGG
1 CTTTGACCTTAGAGACTACCTAACCTTTAATCTACCTATCGG
* * * * * *
185955 CTTTGACCTTGGAGACTACCTTAGCTTTAGTTTAGCTATCGG
1 CTTTGACCTTAGAGACTACCTAACCTTTAATCTACCTATCGG
185997 CTTTGACC
1 CTTTGACC
186005 CTGAAGAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (42 bp):
CTTTGACCTTAGAGACTACCTAACCTTTAATCTACCTATCGG
Found at i:185961 original size:84 final size:84
Alignment explanation
Indices: 185745--185965 Score: 219
Period size: 84 Copynumber: 2.6 Consensus size: 84
185735 TGCCTATTGG
* * * * * *
185745 CTTTGACCCTAGAGACTTCCTTACCATTAGTCTACTTATCGACTTTGACCATGAAGACTTATTGA
1 CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGAAAACTTATTGA
* ** *
185810 CCTTTAGTTTGCCTGTCAA
66 CATTTAGTCCGCCCGTCAA
* * ** * * * * *
185829 CTTTGACTTTGGAGACTTATTTACCTTTAGTCTATCTCTCAGCGTTGACCTTGAAAACTT-TCTT
1 CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGAAAACTTAT-TG
*
185893 ACATTTAGTCCGCCCGTCGA
65 ACATTTAGTCCGCCCGTCAA
* * *
185913 CTTTGACCTTAGAGACTTCCTAACCTTTAATCTACCTATTGGCTTTGACCTTG
1 CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTG
185966 GAGACTACCT
Statistics
Matches: 105, Mismatches: 31, Indels: 2
0.76 0.22 0.01
Matches are distributed among these distances:
83 1 0.01
84 104 0.99
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.38
Consensus pattern (84 bp):
CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGAAAACTTATTGA
CATTTAGTCCGCCCGTCAA
Found at i:186025 original size:42 final size:42
Alignment explanation
Indices: 185979--186083 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
185969 ACTACCTTAG
* * *
185979 CTTTAGTTTAG-CTATCGGCTTTGACCCTGAAGAA-TTCTTTAC
1 CTTTAGTTT-GCCTATCGACTTTGACCATGAA-AACTTCTTGAC
* *
186021 CTTTATTTTGCCTGTCGACTTTGACCATGAAAACTTCTTGAC
1 CTTTAGTTTGCCTATCGACTTTGACCATGAAAACTTCTTGAC
*
186063 TTTTAGTTTGCCTATCGACTT
1 CTTTAGTTTGCCTATCGACTT
186084 AACCATAGAG
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 3 0.06
42 50 0.94
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (42 bp):
CTTTAGTTTGCCTATCGACTTTGACCATGAAAACTTCTTGAC
Found at i:186077 original size:126 final size:126
Alignment explanation
Indices: 185783--186083 Score: 286
Period size: 126 Copynumber: 2.4 Consensus size: 126
185773 AGTCTACTTA
* * *
185783 TCGACTTTGACCATGAAGACTTATTGACCTTTAGTTTGCCTGTCAACTTTGACTTTGGAGACTTA
1 TCGACTTTGACCATGAAGACTTCTTGACCTTTAGTTTGCCTATCAACTTTGACCTTGGAGACTTA
* * * *
185848 TTTACCTTTAGTCTATCTCTCAGCGTTGACCTTGAAAACTTTCTTACATTTAGTCCGCCCG
66 CTTACCTTTAGTCTAGCTATCAGCGTTGACCCTGAAAACTTTCTTACATTTAGTCCGCCCG
* * * * * * ***
185909 TCGACTTTGACC-TTAGAGACTTCCTAACCTTTAATCTACCTATTGGCTTTGACCTTGGAGAC-T
1 TCGACTTTGACCATGA-AGACTTCTTGACCTTTAGTTTGCCTATCAACTTTGACCTTGGAGACTT
* * * * * * ** *
185972 ACCTTAGCTTTAGTTTAGCTATCGGCTTTGACCCTGAAGAA--TTCTTTACCTTTATTTTGCCTG
65 A-CTTACCTTTAGTCTAGCTATCAGCGTTGACCCTGAA-AACTTTC-TTACATTTAGTCCGCCCG
* * *
186035 TCGACTTTGACCATGAAAACTTCTTGACTTTTAGTTTGCCTATCGACTT
1 TCGACTTTGACCATGAAGACTTCTTGACCTTTAGTTTGCCTATCAACTT
186084 AACCATAGAG
Statistics
Matches: 135, Mismatches: 35, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
125 7 0.05
126 124 0.92
127 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.40
Consensus pattern (126 bp):
TCGACTTTGACCATGAAGACTTCTTGACCTTTAGTTTGCCTATCAACTTTGACCTTGGAGACTTA
CTTACCTTTAGTCTAGCTATCAGCGTTGACCCTGAAAACTTTCTTACATTTAGTCCGCCCG
Found at i:187651 original size:126 final size:126
Alignment explanation
Indices: 186240--192285 Score: 1309
Period size: 126 Copynumber: 47.7 Consensus size: 126
186230 CTAACTTTTA
* * * ** * * * *
186240 TGACCTTGGAGAGTT-TCTTACCATTAGTTTGTTTGTCGGCTTTGACCCTGGTGACTTCCTTACC
1 TGACCTTAGAGACTTCT-TTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * ** * * *
186304 ATTT-GTCTGCCTGTCAACTTTGACCCTAGAGAC-TTCTTGATTTTTAGTCTACCTAT-TGACTT
65 -TTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTT-ACCTTTAGTCTGCCTGTCAG-CTT
* * * * * * * * * * * *
186366 TGAGAC-TAAAAACCTCCTTACCTTTAGTCTACTTGTCGGCTTTGACCATGGAGACTACCTTACC
1 TGA-CCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * *
186430 ATTAGTCTGCCTATCAGCTTTGACCTTAGAGACTTCCTAACCTTTAGTCTACCTGTC-GACTT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTT
* * * * * * * * *
186492 TGACCTTGGAGACTACCTTAGCTTTAGTCTAG-CTGTCGACTTTGACCTTGGAAACTTCCTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGT-TTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* ** * * *
186556 TTTAGTTTGCCTATTGGCTTTGACCAT-GAAGAC-TTCTTGACTTTTAGTTTGCCTGTCAG-TT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAG-AGACTTTCTT-ACCTTTAGTCTGCCTGTCAGCTT
* * * * * *
186617 TGACCGTGGAGACTTATTTACCTTTAGTTTG-CTCATCAGCTTTGACCTTAGGGACTTCTTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCT-GTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * * * * * * * ** *
186681 TTTAGCCTGCCTGTCAGTTTTGTCCTTAAATACATCCTTACCTTTAGTCTGCCCGTTGGTTT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * *
186743 TGACAC--AGATAACTTCTTTACCTTTAGTTTGCCT-TCCAGCTTTGACCTTTGAGACTTCCTTA
1 TGAC-CTTAGA-GACTTCTTTACCTTTAGTTTGCCTGT-CGGCTTTGACCTTAGAGACTTCTTTA
* * * * * * * * *
186805 CCTTTAGTCTACCTAT-TGACTTTGACCATGGAGACTATATTACCTTTATTCTG-CTCGT-TGAT
63 CCTTTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCT-GTCAGCT
*
186867 AA
126 -T
* * * * * *
186869 TGACCTT-GAAGACTACTTTACCTTTAGTTTACCCT-TTGGTTTTGAGCTTAGAGACTTCCTTAC
1 TGACCTTAG-AGACTTCTTTACCTTTAGTTT-GCCTGTCGGCTTTGACCTTAGAGACTTCTTTAC
* * * * * *
186932 CTTTAGTCTACCTGTCAGCTTTGACCCTAGAGAC-TTCATTACCTTTAGTCTGTCTATCAACCT
64 CTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * *
186995 TGACGC-TAGAGACTTCCTCACATTTAGTCTGCCTATCAGCTTTGACCTTGGAGACTTCTTTACC
1 TGAC-CTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * ** * *
187059 TTTAGTTTGCCAATCAGCTTTGACAATAGAGACTTTCTTACCTTTAGTCTGCCAGTC-GAATT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTT
* * * * * * * **
187121 TTACCTTAGAGACTTCTTTACCTTTAGTCTGCCCGTCGGCTTTAACCATAGAGATTTTTTTATGT
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCT
* * * * * *
187186 TTAGTCTACCCATCAGCTTTGACCCTAGAAACTTTCTTACCTTTAGTTTGCCTATCAGTTT
66 TTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * ** * *
187247 TGATCTT-GAGGAATTCTTCACCTTGAGTCTACCTGTCAGCTTTGACAATGGAGACATT-TTCAC
1 TGACCTTAGA-GACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGAC-TTCTTTAC
* * * * * * * * *
187310 CTTTTGCCTACCTATCGGCTTTGACCCTAGAGACTTACTAACTTTTAGTCTACCTGTCGGCTT
64 CTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * ** * * *
187373 TAACCTT-GGGACTTCTTGACCTTTAGTTTTCCTAACGACTTGGACCTTGGACG-CTTAC-TTAC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGA-GACTT-CTTTAC
* * * ** * * * * *
187435 CTTTCGTCTGTTTGTCTGTCAGCGCTGACCTTAAAGACTTTTTTACCATTAGTCTACCTGTC-GA
64 CTTTAGTC----TGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-
187499 CTT
124 CTT
* * *
187502 TGACCAT-GAAGACTT-TTTGACCTTTAGTTTGCTTGTCGGCTTTGACCTTAGAGACTTTTTTAC
1 TGACCTTAG-AGACTTCTTT-ACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTAC
* * * * *
187565 CTTTAGTCTG-CTCGTCAGCTTTGACCTTGGAGA-TTTCTTTACCTTTAGCCTGCTTGTCAGCTT
64 CTTTAGTCTGCCT-ATCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAGCTT
* * * * ** * *
187628 TGTCCTTAGAGACTTCTTTACCTTCAGTCTACCCATCGGCTTTGA-CATAGAAGACTTCCTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAG-AGACTTCTTTACC
* * * * * * *
187692 TTTAGTTTACCTATC-GACTTTGACCCTGGAG-CCTTCGTTAGCTTTA-TACT-CCTCGTCGGCA
65 TTTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTC-TTACCTTTAGT-CTGCCT-GTCAGCT
*
187753 A
126 T
* * * ** * ** * * *
187754 TGACCCTAAAGACTACTTTACCTTTAGTCTACCCT-TTGATTTTGAGCTTAGAAACTTCCTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGT-TTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * * * *
187818 TTTAGTCTACCTGTCGGCTTTAACCCT-GCAGAC-TTCATTACCTTTAGTCTGCCTATCAACCT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAG-AGACTTTC-TTACCTTTAGTCTGCCTGTCAGCTT
* * * * * *
187880 TGACGC-TAGAGACTTCCTCACCTTTAGTCTGCCTATTGGCTTTGACTTTAGAGACTTCTTTACC
1 TGAC-CTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * * * * *
187944 TTTATTCTG-CTAGTC-GACTTTAACACTAGAGACTTTCTTACCCTTAGACTACC-GATCGGATT
65 TTTAGTCTGCCTA-TCAG-CTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTG-TCAGCTT
* * * * * * * *
188006 TGACCTTAGAGACTTTTTTACCTTAAGTCTGCCCGTCGACTTTAACCTTAGAGACTTTTTTACGT
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCT
* * * * * *
188071 TTAGTCTACCCATC-GACTTTGACCCTAGAGACTTTCTTGCCTTTAGTTTGCCTATCGGCTT
66 TTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * *
188132 TGACCTT-GAAGACTTCTTGACCTTTAGTTTGCCTGTCGACTTTGACCTT-GCAGACTTATTTAC
1 TGACCTTAG-AGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAG-AGACTTCTTTAC
* * * * * * * * * ** *
188195 CTTTAGTTTGTCTATCAACGTTGA-CCTTGAAAACTTTCTTACGTTGA-CCTTAAAAACTTTCTA
64 CTTTAGTCTGCCTATCAGCTTTGACCCTAG-AGACTTTCTTACCTTTAGTC-T---GCCTGTC--
*
188258 ACCTT
122 AGCTT
* * * *** * * * * **
188263 TAGTCTACC-T-GCCGAC-T-TTGACCTTGGAAACTACCT-T-AGCTTTAGA--TTAGCTGTCGG
1 T-G---ACCTTAG-AGACTTCTTTACCTT-TAGTTTGCCTGTCGGCTTT-GACCTTAG-AGACTT
** * * *
188320 CTTTGACCCTGAAGACTTTCTTACCTTAAGTCTACCTATAGACTTTGACC-ATGAAGAC-TTCTT
58 CTTT-A-CCTTTAG----TC-TGCC-T-A-TC-AGCT-TTGAC-----CCTA-G-AGACTTTCTT
* * * * *
188383 GACTTTTAGTTTACCTAT-TGACTT
104 -ACCTTTAGTCTGCCTGTCAG-CTT
* * * * *
188407 TGACCTTGGAGACTTGC-TTACTTGCTTTTAGTCTACCTGTTGGCTTTGACAC-TAGAGACTTCC
1 TGACCTTAGAGACTT-CTTTAC---C-TTTAGTTTGCCTGTCGGCTTTGAC-CTTAGAGACTTCT
* * * * * * *
188470 TTACCTTTAGTCTGCCTGTCGGCTTTGACACTAGAGACTTCCTTACCTTTAATCTGCTTGTCAAC
60 TTACCTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGC
188535 TT
125 TT
* * * * ** * * * * * *
188537 TGGCCTTGGAGACTTCCTGATTTTTGGTCTGCCTGTCGGCTTTAATCTTTGAAACTT-TTTGA-C
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTT-ACC
* * * *
188600 TTT--TTTGACC-A--AG----G-----AGAG--TTTCTTACCATTAGTTTGCCTGTCGGCTT
65 TTTAGTCTG-CCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * * * **
188647 TGACCTTGGTGACTTCCTTACCTTTTGTCTGCCTGTTGGCTTTAACCCTAGAGACTTCTTGATTT
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCT
* ** * * * * * * * * **
188712 TTAGTCTACCTATTGGCTTTGAGCCTAAAAACCTCCTTACCTCTAGTCTACTTGTTGGCTT
66 TTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * * ** * *
188773 TGACCATGGAGGCTACCTTACCATTAGTCTGCCTATCAACTTTGACCTTAGAGACTTCCTAACCT
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCT
* * * ** * * * * *
188838 TTAGTCTACCTGTTAGCTTTGACTTTTGAGACTATCTTAGCTTTAGTCTAG-CGGTCGGCTT
66 TTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCT-GCCTGTCAGCTT
* * ** * *
188899 TGACCTTAGAGACTTTTTTACCTTTAGTCTGCCTACCAGCTTTGACCAT-GAAGACTT-TTTGAC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAG-AGACTTCTTT-AC
* * * * * * * * *
188962 TTTTAGTTTGCTTGTC-GACTTTGACCTTGGAGAC-TTCTTTACCTTTAGCCTGTCTGTCAACTT
64 CTTTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * * * *
189025 TGTCCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGACTTTGACAC-AAAAGACTTCCTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGAC-CTTAGAGACTTCTTTACC
* * * * * *
189089 TTTAGTTTGCCT-TCTAGCTTTGACCTTGGAGACTTTCTTACCTTAAGTCTACCTATC-GACTT
65 TTTAGTCTGCCTATC-AGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTT
** * * * * * * * *
189151 TGACAATGGAGACTTCATTACCTTTATTTTG-CTCGCCAG-TAATGACCCT-GAAGACTACTTTA
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCT-GTCGGCT-TTGACCTTAG-AGACTTCTTTA
* * * * * * * *
189213 CCTTTAGTCTACCCT-TCAGTTTTGAGCTTAAAGAC-TTCTTTACCTTTAGTCTACCCGTCGGCT
63 CCTTTAGTCT-GCCTATCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAGCT
189276 T
126 T
* * * * * * ** *
189277 TGACCCTAGAGGCTT-TATTACCCTTAGTCTACCTATCAACTTTGACGC-TAGAAACTT-TCTTA
1 TGACCTTAGAGACTTCT-TTACCTTTAGTTTGCCTGTCGGCTTTGAC-CTTAGAGACTTCT-TTA
* * * * * * * ** *
189339 CCTTTAGTTTGCTTGTCAGCTTTAACCTTGGAGAC-TACTTTACCTTTAGT-TTACTAGTCGGCT
63 CCTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCT-GTCAGCT
189402 T
126 T
* * * * * ** * *
189403 TAACATTGGAGACTTTTTTACCTTTAGTCTGCC-GATCGAATTTAACTTTAGAGACTTCTTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTG-TCGGCTTTGACCTTAGAGACTTCTTTACC
** * * * * * * * **
189467 TTTAGTCTGCCCGTCAACTTTAACCTTGGAGACTTTTTTACGTTTAGTCTACCCATC-GACTT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTT
* * * * * * * **
189529 TGACCCTAGAGACTT-TCTTACCGTTAGTTTGCCTATTGGCTTTGACCTTGGGGAATTCTTCGCC
1 TGACCTTAGAGACTTCT-TTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
** * * * * * * * * * *
189593 TTTAGTCTATCTGTCAGATTTAACCTTGGAGACATTT-TCACCTTTTGTCTGTCTATCGGCTT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAGAGAC-TTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * *
189655 TGACCCTAGAGACTTAC-TAACCTTTAGTCTACCTGTTGGCTTTGACCTTGGAGACTTCCTTACC
1 TGACCTTAGAGACTT-CTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * * * * * ** *
189719 ATTAGTCTACC-AGTCGGCTTGGACCTTAGAGGC-TTCTTTACCTTTAGTTTGCCTATTGGTTT
65 TTTAGTCTGCCTA-TCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAGCTT
* * * * ** * * *
189781 TGACCTTAGAGACTTTTTTACCATTAGTTTGCTTGCCAACTTTGATCAT-GAAGACTTCTTGACC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAG-AGACTTCTTTACC
* * * * * * * * *
189845 TTTAGTTTGCTTGTCAGCTTTGACCTTGGAGACTTAT-TTACCTTTAATCTGTCTATCAGCGT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTT-TCTTACCTTTAGTCTGCCTGTCAGCTT
* * * *
189907 TGACCTT-GAAGACTT-TCTTACATTTAGTCTGTCC-GTCGGCTTGGACC-TAGAAGACTTCATT
1 TGACCTTAG-AGACTTCT-TTACCTTTAGTTTG-CCTGTCGGCTTTGACCTTAG-AGACTTCTTT
* * ** * * * * * * *
189968 ACCTTGAGTCTACCTATTGGCTTTGACCTTGGAGACTTCCTTACCATTAGTTTGTCGGTCAGCTT
62 ACCTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * *
190033 TGACCTTAGAGACTTCTTTTCCTTTAGTCTGCTCAT-T-TGCTTTGACCCTAGAGACTTCCTTAC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGC-C-TGTCGGCTTTGACCTTAGAGACTTCTTTAC
* * * * *
190096 CTTTAGTCTACCTATCAGTTTTGA-CCAATGAGACTTCTTTACTTACC-TTAGTCTGCTTGTCGG
64 CTTTAGTCTGCCTATCAGCTTTGACCCTA-GAGA---CTTT-CTTACCTTTAGTCTGCCTGTCAG
190159 CTT
124 CTT
* * * * * ** * * * **
190162 TGACAC-TAGGGACTTCCTTACCTTTGGTCTGCCTATCAACTTTGACCTTGGAGACTTCCTGATT
1 TGAC-CTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * * * * * * * *
190226 TTTGGTTTGCCTGTCAGCTTCGGCCCTTA-AGACCTCCTAACGTTT--T-TGACCATG-GAGAGT
65 TTTAGTCTGCCTATCAGCTTTGACCC-TAGAGACTTTCTTACCTTTAGTCTG-CC-TGTCAG-CT
190286 T
126 T
* * * * * * ** **
190287 CCTTACCATT--AG-TTTGCCTATCAACTTT-GATCTTG-GTGACTTCTTT-ACCTTTAGTCTAC
1 --TGACC-TTAGAGACTT--CT-TTACCTTTAG-T-TTGCCTGTCGGCTTTGACC-TTAG-AGA-
** * ** ** * *
190346 CTATCGACTTTGACCCTAGAGACTTTC-AT-ATTTTTAGTCTGCCT-GTTAG-C-TT-TGACC-T
55 CT-T---CTTT-A-CCTTTAGTCTGCCTATCAGCTTT-GAC--CCTAG--AGACTTTCTTACCTT
* * *
190404 TAGAAACTTCCT-T-ACCTT
109 TAG--TCTGCCTGTCAGCTT
* * ** * ** ** * *
190422 TAATTTGCTTATTG-GTTTTGACCTTGAAGACTACTTTAGCTTTAGTTTGCTCGTCGGCTTTAAC
1 TGA---CCTTA--GAGACTT---CTT---TAC--CTTTAG-TTT-GCCTG-TCG--GCTTTGACC
* * ** ** * * * ** * *
190486 CT-TAGA-GACTTCCTAACCTAAAGTCTACCTGTCGGCTTTGACTTTGGAGACTTCCTTACCTTT
48 TTAGAGACTTCTT--TA-CCTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTT
* *
190549 AGTCTAG-CTATCGGCTT
110 AGTCT-GCCTGTCAGCTT
* * * * * * ** *
190566 TGACCTTGGAGACTT-TCTTACTTTTAGTTTGCCTATAGGTTTTGACCCTAGTTACTTTTTTACC
1 TGACCTTAGAGACTTCT-TTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * * * * * *
190630 TTTAGTCTACTTGTCAGCTTTAACCTTAGAGACTTT-TTCCACCTTTTA-TCTACCTATCGGGTT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTT--ACC-TTTAGTCTGCCTGTCAGCTT
* * * * * * * ** * * *
190693 TAACACTCAAAG-CTTCTTAACTTTTAGTCTGCCTATCAACTTTAACCCTAGAAACTTGC-TTAC
1 TGAC-CTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTT-CTTTAC
* * * * * * *
190756 CTTTAGTCTGCCTATC-GTCTTTGATCTTAGA-ACTTTCTGACCTTTTGTCTACTTATCAGCTT
64 CTTTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * * * ** * **
190818 TGACCTTGGAGACATCTTTACATTTAGTCTACCTATTGGCCTTAACCTCGGAGACTTCCTTGTCT
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCT
* * * * * ** * * *
190883 TTACTCTACCTATC-GATTTTGACCTTGGAGAC-TTCTTTACCTTTAGT-TTTCTCATCGGTTT
66 TTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCT-GTCAGCTT
* * * * * * * * *
190944 TTACCCTAGAGACTTCCTTACCTCTAGTCTACCCGTCGACTTTGACCTT-GAAAACTTAC-TTAC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAG-AGACTT-CTTTAC
* * * * * * * *
191007 CTTTAGGCTGCCTAT-TGACTTTGACCTTGGAGACTTCCTTACCTTTAGTTTGCCCGTC-GACCT
64 CTTTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTT
* * * * * ** *
191070 TGACCCTA-AGGACTTCCTTACCTTTAGTCTACCTATCGAATTTGACCTTAGAGACTTCTTTATC
1 TGACCTTAGA-GACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACC
* * * * *
191134 TTTAGTCTGCAC-GTCAGCTTTGACCTTGGAGACTCTT-TTACCTTTAGTCTACATGTCAGCTT
65 TTTAGTCTGC-CTATCAGCTTTGACCCTAGAGACT-TTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * *
191196 TGACCCTAGAGACTT-TCTTACCTTTAGTTTGCCTATCGGCTTTGACCTTGGAGAATT-TTTCAC
1 TGACCTTAGAGACTTCT-TTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTT-AC
* * * * * * * * * * *
191259 CTTTTGTCTGCTTGTCAGCTTTGACCTTGGAGACATTT-TCATCTTTTGTCTGCTTGTCGGCCT
64 CTTTAGTCTGCCTATCAGCTTTGACCCTAGAGAC-TTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * * * * *
191322 TGACTTTGGAGACTTCCTGA-CTTTCAGTCTGCTTTTCGGCTATGACCTTGGAGACATT-TTCAT
1 TGACCTTAGAGACTTCTTTACCTTT-AGTTTGCCTGTCGGCTTTGACCTTAGAGAC-TTCTTTAC
* * ** ** * * * *
191385 CTTTTGTCTGCCTGTCAGCCATGACTTTGGAGAC-TTCTTTACTTTTAGTCTGCTTGTCGGCTT
64 CTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * ** * *
191448 TGACCTTGGAAACTTCCTTACCTTTAGTCTGCCTATTGATTTTGACCCTAAAGACTT-TCTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCT-TTACC
* * * * * * *
191512 TATAGTGTGCCTGTC-GACTTTGACCCTAGGGA----CTT--C----GTATGCCTAT-AGGGTT
65 TTTAGTCTGCCTATCAG-CTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCA-GCTT
* * * * * * * *
191564 TGACCTGAGAGACTTCTTTAGCTTTAGTCTGCCTATTGGCTTTGACCTTGGAGACTTCCTTAACT
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCT
* * * * * *
191629 TTAGTCTG-CTCATCGGCTTTGACTCTAGAGACTTT-TTCACCTTTAGTTTTCCAGTC-GGTT
66 TTAGTCTGCCT-ATCAGCTTTGACCCTAGAGACTTTCTT-ACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * *
191689 GTGACAC-TGGAGACTT-TCTTACCTTTAGTCTGCTTGTCAGCTTTGGCTTTGGGGACTTCTTTA
1 -TGAC-CTTAGAGACTTCT-TTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTA
* * * * * * ** *
191752 CCTTCAGTTTGCCTATCGGCTTTGGCCCTAAAGAC-TTCTTTACCTTTAGTTTATCTATC-GACT
63 CCTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAG-CT
191815 T
126 T
* * * * *
191816 TGACCCTAGAGACTTCCTTACTTACCTTTAGTCTGCTTGTCGGCTTTAACCTTAGAGACTTCCTT
1 TGACCTTAGAGACTT-C-T--TTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTT
*** * ** * * * *
191881 ACCTTTAGTCTATTTGTTGGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTCCCTATCAGCTT
62 ACCTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
* * * * * * * ***
191946 TGACCTTGGAGACTTCCTCACCTTTAGTCTT-CCTATCAGCTTTAACCTTA-AGGATTTCCAAAC
1 TGACCTTAGAGACTTCTTTACCTTTAGT-TTGCCTGTCGGCTTTGACCTTAGA-GACTTCTTTAC
* * ** * * * * *
192009 CTTTAGTCTTCCTACCAGCTTTGACGTTGGA-AATTTCTTTACCTTTAGTCTACCTAT-TGACTT
64 CTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGCCTGTCAG-CTT
* * * * * * * *
192072 TGACCTTGGAGACTTC-CTACCTTTAGTTTACTTATCGGTTTTGACC-CAGGTGACTTCTTTACC
1 TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTA-GAGACTTCTTTACC
* * * * * **
192135 TTTAGTCTGCCTGTCAGCTTTGA-CCTTGAAGACTTT-TTCACCTTTTGTCTACCTATTTGCTT
65 TTTAGTCTGCCTATCAGCTTTGACCCTAG-AGACTTTCTT-ACCTTTAGTCTGCCTGTCAGCTT
* * ** *** * * * *
192197 TGACAC-TAGAGACATCCTTATTTTTAGTCACCCTGTCGGCTTTAACCCT-GAAAACATCTTTAC
1 TGAC-CTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAG-AGACTTCTTTAC
* *
192260 CTTTAGTCTGTCTATCGGCTTTGACC
64 CTTTAGTCTGCCTATCAGCTTTGACC
192286 TTGGAAACTT
Statistics
Matches: 4345, Mismatches: 1191, Indels: 767
0.69 0.19 0.12
Matches are distributed among these distances:
110 69 0.02
111 5 0.00
112 6 0.00
113 3 0.00
115 3 0.00
116 83 0.02
117 2 0.00
119 3 0.00
121 1 0.00
122 3 0.00
123 6 0.00
124 32 0.01
125 413 0.10
126 2853 0.66
127 213 0.05
128 31 0.01
129 145 0.03
130 191 0.04
131 29 0.01
132 19 0.00
133 13 0.00
134 14 0.00
135 14 0.00
136 13 0.00
137 8 0.00
138 9 0.00
139 7 0.00
140 13 0.00
141 17 0.00
142 23 0.01
143 16 0.00
144 22 0.01
145 3 0.00
146 19 0.00
147 8 0.00
148 15 0.00
149 19 0.00
150 2 0.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (126 bp):
TGACCTTAGAGACTTCTTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCT
TTAGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTT
Found at i:188202 original size:42 final size:41
Alignment explanation
Indices: 186273--188224 Score: 810
Period size: 42 Copynumber: 46.4 Consensus size: 41
186263 TTAGTTTGTT
* * * *
186273 TGTCGGCTTTGACCCTGGTGACTTCCTTACCATTT-GTCTGCC
1 TGTCGACTTTGA-CCTTGAGACTTCTTTACC-TTTAGTCTGCC
* * * ** *
186315 TGTCAACTTTGACCCTAGAGACTTCTTGATTTTTAGTCTACC
1 TGTCGACTTTGA-CCTTGAGACTTCTTTACCTTTAGTCTGCC
* * * ** * * * * *
186357 TATTGACTTTGAGACTAAAAACCTCCTTACCTTTAGTCTACT
1 TGTCGACTTTGA-CCTTGAGACTTCTTTACCTTTAGTCTGCC
* * * * *
186399 TGTCGGCTTTGACCATGGAGACTACCTTACCATTAGTCTGCC
1 TGTCGACTTTGACC-TTGAGACTTCTTTACCTTTAGTCTGCC
* * * *
186441 TATC-AGCTTTGACCTTAGAGACTTCCTAACCTTTAGTCTACC
1 TGTCGA-CTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * *
186483 TGTCGACTTTGACCTTGGAGACTACCTTAGCTTTAGTCTAG-C
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCT-GCC
* * *
186525 TGTCGACTTTGACCTTGGAAACTTCCTTACCTTTAGTTTGCC
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * * * * * *
186567 TATTGGCTTTGACCATGAAGACTTCTTGACTTTTAGTTTGCC
1 TGTCGACTTTGACCTTG-AGACTTCTTTACCTTTAGTCTGCC
* * * *
186609 TGTC-AGTTTGACCGTGGAGACTTATTTACCTTTAGTTTG-C
1 TGTCGACTTTGACC-TTGAGACTTCTTTACCTTTAGTCTGCC
* * *
186649 TCATC-AGCTTTGACCTTAGGGACTTCTTTACCTTTAGCCTGCC
1 T-GTCGA-CTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * * * * *
186692 TGTC-AGTTTTGTCCTTAAATACATCCTTACCTTTAGTCTGCC
1 TGTCGA-CTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * ** * * *
186734 CGTTGGTTTTGACAC-AGATAACTTCTTTACCTTTAGTTTGCC
1 TGTCGACTTTGAC-CTTGA-GACTTCTTTACCTTTAGTCTGCC
* * *
186776 T-TCCAGCTTTGACCTTTGAGACTTCCTTACCTTTAGTCTACC
1 TGTCGA-CTTTGACC-TTGAGACTTCTTTACCTTTAGTCTGCC
* * * * *
186818 TATTGACTTTGACCATGGAGACTAT-ATTACCTTTATTCTG-C
1 TGTCGACTTTGACC-TTGAGACT-TCTTTACCTTTAGTCTGCC
* * * * *
186859 TCGTTGA-TAATGACCTTGAAGACTACTTTACCTTTAGTTTACCC
1 T-GTCGACT-TTGACCTTG-AGACTTCTTTACCTTTAGTCT-GCC
* ** * * *
186903 T-TTGGTTTTGAGCTTAGAGACTTCCTTACCTTTAGTCTACC
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * *
186944 TGTC-AGCTTTGACCCTAGAGACTTCATTACCTTTAGTCTGTC
1 TGTCGA-CTTTGA-CCTTGAGACTTCTTTACCTTTAGTCTGCC
* * * * * * *
186986 TATCAACCTTGACGCTAGAGACTTCCTCACATTTAGTCTGCC
1 TGTCGACTTTGAC-CTTGAGACTTCTTTACCTTTAGTCTGCC
* *
187028 TATC-AGCTTTGACCTTGGAGACTTCTTTACCTTTAGTTTGCC
1 TGTCGA-CTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
** * *
187070 AATC-AGCTTTGACAATAGAGACTT-TCTTACCTTTAGTCTGCC
1 TGTCGA-CTTTGAC-CTTGAGACTTCT-TTACCTTTAGTCTGCC
* * *
187112 AGTCGAATTTTACCTTAGAGACTTCTTTACCTTTAGTCTGCC
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * * * * * ** *
187154 CGTCGGCTTTAACCATAGAGATTTTTTTATGTTTAGTCTACC
1 TGTCGACTTTGACC-TTGAGACTTCTTTACCTTTAGTCTGCC
** * * *
187196 CATC-AGCTTTGACCCTAGAAACTT-TCTTACCTTTAGTTTGCC
1 TGTCGA-CTTTGA-CCTTGAGACTTCT-TTACCTTTAGTCTGCC
* * * * * * *
187238 TATC-AGTTTTGATCTTGAGGAATTCTTCACCTTGAGTCTACC
1 TGTCGA-CTTTGACCTTGA-GACTTCTTTACCTTTAGTCTGCC
* * * * * *
187280 TGTC-AGCTTTGACAATGGAGACATT-TTCACCTTTTGCCTACC
1 TGTCGA-CTTTGAC-CTTGAGAC-TTCTTTACCTTTAGTCTGCC
* * * * * *
187322 TATCGGCTTTGACCCTAGAGACTTAC-TAACTTTTAGTCTACC
1 TGTCGACTTTGA-CCTTGAGACTT-CTTTACCTTTAGTCTGCC
* * * * * *
187364 TGTCGGCTTTAACCTTGGGACTTCTTGACCTTTAGTTTTCC
1 TGTCGACTTTGACCTTGAGACTTCTTTACCTTTAGTCTGCC
** * * **
187405 TAACGACTTGGACCTTG-GACGCTTAC-TTACCTTTCGTCTGTT
1 TGTCGACTTTGACCTTGAGA--CTT-CTTTACCTTTAGTCTGCC
** * * * *
187447 TGTCTGTCAGCGCTGACCTTAAAGACTTTTTTACCATTAGTCTACC
1 TGTC-G--A-CTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * *
187493 TGTCGACTTTGACCATGAAGACTT-TTTGACCTTTAGTTTGCT
1 TGTCGACTTTGACCTTG-AGACTTCTTT-ACCTTTAGTCTGCC
* *
187535 TGTCGGCTTTGACCTTAGAGACTTTTTTACCTTTAGTCTG-C
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * *
187576 TCGTC-AGCTTTGACCTTGGAGATTTCTTTACCTTTAGCCTGCT
1 T-GTCGA-CTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * *
187619 TGTC-AGCTTTGTCCTTAGAGACTTCTTTACCTTCAGTCTACC
1 TGTCGA-CTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
** * * * * * *
187661 CATCGGCTTTGACATAGAAGACTTCCTTACCTTTAGTTTACC
1 TGTCGACTTTGACCTTG-AGACTTCTTTACCTTTAGTCTGCC
* * * * *
187703 TATCGACTTTGACCCTGGAGCCTTCGTTAGCTTTA-TACT-CC
1 TGTCGACTTTGA-CCTTGAGACTTCTTTACCTTTAGT-CTGCC
* ** ** * *
187744 TCGTCGGCAATGACCCTAAAGACTACTTTACCTTTAGTCTACCC
1 T-GTCGACTTTGA-CCTTGAGACTTCTTTACCTTTAGTCT-GCC
* * * * * *
187788 T-TTGATTTTGAGCTTAGAAACTTCCTTACCTTTAGTCTACC
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * * *
187829 TGTCGGCTTTAACCCTGCAGACTTCATTACCTTTAGTCTGCC
1 TGTCGACTTTGACCTTG-AGACTTCTTTACCTTTAGTCTGCC
* * * * * *
187871 TATCAACCTTGACGCTAGAGACTTCCTCACCTTTAGTCTGCC
1 TGTCGACTTTGAC-CTTGAGACTTCTTTACCTTTAGTCTGCC
* * * * *
187913 TATTGGCTTTGACTTTAGAGACTTCTTTACCTTTATTCTG-C
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * * * *
187954 TAGTCGACTTTAACACTAGAGACTT-TCTTACCCTTAGACTACC
1 T-GTCGACTTTGAC-CTTGAGACTTCT-TTACCTTTAGTCTGCC
* *
187997 -GATCGGA-TTTGACCTTAGAGACTTTTTTACCTTAAGTCTGCC
1 TG-TC-GACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
* * * * *
188039 CGTCGACTTTAACCTTAGAGACTTTTTTACGTTTAGTCTACC
1 TGTCGACTTTGACCTT-GAGACTTCTTTACCTTTAGTCTGCC
** * * *
188081 CATCGACTTTGACCCTAGAGACTT-TCTTGCCTTTAGTTTGCC
1 TGTCGACTTTGA-CCTTGAGACTTCT-TTACCTTTAGTCTGCC
* * * *
188123 TATCGGCTTTGACCTTGAAGACTTCTTGACCTTTAGTTTGCC
1 TGTCGACTTTGACCTTG-AGACTTCTTTACCTTTAGTCTGCC
* * *
188165 TGTCGACTTTGACCTTGCAGACTTATTTACCTTTAGTTTGTC
1 TGTCGACTTTGACCTTG-AGACTTCTTTACCTTTAGTCTGCC
* * *
188207 TATCAACGTTGACCTTGA
1 TGTCGACTTTGACCTTGA
188225 AAACTTTCTT
Statistics
Matches: 1448, Mismatches: 364, Indels: 197
0.72 0.18 0.10
Matches are distributed among these distances:
40 5 0.00
41 124 0.09
42 1234 0.85
43 51 0.04
44 5 0.00
45 2 0.00
46 25 0.02
48 2 0.00
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (41 bp):
TGTCGACTTTGACCTTGAGACTTCTTTACCTTTAGTCTGCC
Found at i:188239 original size:23 final size:23
Alignment explanation
Indices: 188212--188256 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
188202 TTGTCTATCA
*
188212 ACGTTGACCTTGAAAACTTTCTT
1 ACGTTGACCTTAAAAACTTTCTT
188235 ACGTTGACCTTAAAAACTTTCT
1 ACGTTGACCTTAAAAACTTTCT
188257 AACCTTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (23 bp):
ACGTTGACCTTAAAAACTTTCTT
Found at i:188294 original size:42 final size:41
Alignment explanation
Indices: 188238--188520 Score: 138
Period size: 42 Copynumber: 6.6 Consensus size: 41
188228 CTTTCTTACG
* *
188238 TTGACCTTAAAAACTTTCTAACCTTTAGTCTACCTGCCGACT
1 TTGACCTT-GAAACTTTCTTACCTTTAGTCTACCTGCCGACT
** * * * *
188280 TTGACCTTGGAAACTACCTTAGCTTTAGAT-TAGCTGTCGGCT
1 TTGACCTT-GAAACTTTCTTACCTTTAG-TCTACCTGCCGACT
* * ***
188322 TTGACCCTGAAGACTTTCTTACCTTAAGTCTACCTATAGACT
1 TTGACCTTGAA-ACTTTCTTACCTTTAGTCTACCTGCCGACT
* * * ***
188364 TTGACCATGAAGAC-TTCTTGACTTTTAGTTTACCTATTGACT
1 TTGACCTTGAA-ACTTTCTT-ACCTTTAGTCTACCTGCCGACT
* * ** *
188406 TTGACCTTGGAGACTTGCTTACTTGCTTTTAGTCTACCTGTTGGCT
1 TTGACCTT-GAAACTTTCTTAC---C-TTTAGTCTACCTGCCGACT
* * * * * *
188452 TTGACACTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGCT
1 TTGAC-CTTGAAACTTTCTTACCTTTAGTCTACCTGCCGACT
* * *
188494 TTGACACTAGAGACTTCCTTACCTTTA
1 TTGAC-CTTGAAACTTTCTTACCTTTA
188521 ATCTGCTTGT
Statistics
Matches: 196, Mismatches: 34, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
41 9 0.05
42 144 0.73
43 8 0.04
46 33 0.17
47 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (41 bp):
TTGACCTTGAAACTTTCTTACCTTTAGTCTACCTGCCGACT
Found at i:188454 original size:46 final size:46
Alignment explanation
Indices: 188380--188515 Score: 156
Period size: 42 Copynumber: 3.0 Consensus size: 46
188370 ATGAAGACTT
* * * * *
188380 CTTGACTTTTAGTTTACCTATTGACTTTGAC-CTTGGAGACTTGCTTA
1 CTTG-CTTTTAGTCTACCTGTTGGCTTTGACAC-TAGAGACTTCCTTA
188427 CTTGCTTTTAGTCTACCTGTTGGCTTTGACACTAGAGACTTCCTTA
1 CTTGCTTTTAGTCTACCTGTTGGCTTTGACACTAGAGACTTCCTTA
* *
188473 C---C-TTTAGTCTGCCTGTCGGCTTTGACACTAGAGACTTCCTTA
1 CTTGCTTTTAGTCTACCTGTTGGCTTTGACACTAGAGACTTCCTTA
188515 C
1 C
188516 CTTTAATCTG
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
42 39 0.48
43 1 0.01
46 36 0.44
47 5 0.06
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (46 bp):
CTTGCTTTTAGTCTACCTGTTGGCTTTGACACTAGAGACTTCCTTA
Found at i:188526 original size:42 final size:42
Alignment explanation
Indices: 188433--188579 Score: 170
Period size: 42 Copynumber: 3.5 Consensus size: 42
188423 CTTACTTGCT
* *
188433 TTTAGTCTACCTGTTGGCTTTGACACTAGAGACTTCCTTACC
1 TTTAGTCTGCCTGTCGGCTTTGACACTAGAGACTTCCTTACC
188475 TTTAGTCTGCCTGTCGGCTTTGACACTAGAGACTTCCTTACC
1 TTTAGTCTGCCTGTCGGCTTTGACACTAGAGACTTCCTTACC
* * ** * * * **
188517 TTTAATCTGCTTGTCAACTTTGGC-CTTGGAGACTTCCTGATT
1 TTTAGTCTGCCTGTCGGCTTTGACAC-TAGAGACTTCCTTACC
*
188559 TTTGGTCTGCCTGTCGGCTTT
1 TTTAGTCTGCCTGTCGGCTTT
188580 AATCTTTGAA
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
41 1 0.01
42 87 0.99
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (42 bp):
TTTAGTCTGCCTGTCGGCTTTGACACTAGAGACTTCCTTACC
Found at i:188667 original size:42 final size:42
Alignment explanation
Indices: 188603--190221 Score: 809
Period size: 42 Copynumber: 38.5 Consensus size: 42
188593 TTTTGACTTT
** * * * *
188603 TTTGACCAAGGAGAGTTTCTTACCATTAGTTTGCCTGTCGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * *
188645 TTTGACCTTGGTGACTTCCTTACCTTTTGTCTGCCTGTTGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * ** * * *
188687 TTTAACCCTAGAGACTT-CTTGATTTTTAGTCTACCTATTGGC
1 TTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCTGTCGGC
** * * * * * *
188729 TTTGAGCC-TAAAAACCTCCTTACCTCTAGTCTACTTGTTGGC
1 TTTGA-CCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * * **
188771 TTTGACCATGGAGGCTACCTTACCATTAGTCTGCCTATCAAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * **
188813 TTTGACCTTAGAGACTTCCTAACCTTTAGTCTACCTGTTAGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * *
188855 TTTGACTTTTGAGACTAT-CTTAGCTTTAGTCTAG-CGGTCGGC
1 TTTGACCTTGGAGACT-TCCTTACCTTTAGTCT-GCCTGTCGGC
* ** ** *
188897 TTTGACCTTAGAGACTTTTTTACCTTTAGTCTGCCTACCAGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * * * *
188939 TTTGACCATGAAGACTT-TTTGACTTTTAGTTTGCTTGTCGAC
1 TTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCTGTCGGC
* * * **
188981 TTTGACCTTGGAGACTTCTTTACCTTTAGCCTGTCTGTCAAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * *
189023 TTTGTCCTTGGAGACTTCCTTACCTTTAGTCTACCCGTCGAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
*** * *
189065 TTTGACAC-AAAAGACTTCCTTACCTTTAGTTTGCCT-TCTAGC
1 TTTGAC-CTTGGAGACTTCCTTACCTTTAGTCTGCCTGTC-GGC
* * * * *
189107 TTTGACCTTGGAGACTTTCTTACCTTAAGTCTACCTATCGAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
** * * * * *
189149 TTTGACAATGGAGACTTCATTACCTTTATTTTG-CTCGCCAG-
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCT-GTCGGC
* * * * * * * *
189190 TAATGACCCTGAAGACTACTTTACCTTTAGTCTACCCT-TCAGT
1 T-TTGACCTTGGAGACTTCCTTACCTTTAGTCT-GCCTGTCGGC
* ** * * *
189233 TTTGAGCTTAAAGACTTCTTTACCTTTAGTCTACCCGTCGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * ** * * * **
189275 TTTGACCCTAGAGGCTTTATTACCCTTAGTCTACCTATCAAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * * *
189317 TTTGACGC-TAGAAACTTTCTTACCTTTAGTTTGCTTGTCAGC
1 TTTGAC-CTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * **
189359 TTTAACCTTGGAGACTACTTTACCTTTAGT-TTACTAGTCGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCT-GTCGGC
* * ** **
189401 TTTAACATTGGAGACTTTTTTACCTTTAGTCTGCC-GATCGAA
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTG-TCGGC
* * * * * **
189443 TTTAACTTTAGAGACTTCTTTACCTTTAGTCTGCCCGTCAAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* ** * * ** *
189485 TTTAACCTTGGAGACTTTTTTACGTTTAGTCTACCCATCGAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * * * *
189527 TTTGACCCTAGAGACTTTCTTACCGTTAGTTTGCCTATTGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * ** * *
189569 TTTGACCTTGGGGAATT-CTTCGCCTTTAGTCTATCTGTCAGA
1 TTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCTGTCGGC
* * * *
189611 TTTAACCTTGGAGACATT--TTCACCTTTTGTCTGTCTATCGGC
1 TTTGACCTTGGAGAC-TTCCTT-ACCTTTAGTCTGCCTGTCGGC
* * * * * *
189653 TTTGACCCTAGAGACTTACTAACCTTTAGTCTACCTGTTGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * *
189695 TTTGACCTTGGAGACTTCCTTACCATTAGTCTACCAGTCGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * * * * *
189737 TTGGACCTTAGAGGCTTCTTTACCTTTAGTTTGCCTATTGGT
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* ** * * * * **
189779 TTTGACCTTAGAGACTTTTTTACCATTAGTTTGCTTGCCAAC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * * *
189821 TTTGATCATGAAGACTT-CTTGACCTTTAGTTTGCTTGTCAGC
1 TTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCTGTCGGC
** * * * *
189863 TTTGACCTTGGAGACTTATTTACCTTTAATCTGTCTATCAGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * *
189905 GTTGACCTTGAAGACTTTCTTACATTTAGTCTGTCC-GTCGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTG-CCTGTCGGC
* * * * * * * *
189947 TTGGACCTAGAAGACTTCATTACCTTGAGTCTACCTATTGGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *
189989 TTTGACCTTGGAGACTTCCTTACCATTAGTTTGTCGGTCAGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * *
190031 TTTGACCTTAGAGACTTCTTTTCCTTTAGTCTGCTCAT-T-TGC
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGC-C-TGTCGGC
* * * * * *
190073 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTACCTATCAGT
1 TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* *
190115 TTTGACCAAT-GAGACTTCTTTACTTACC-TTAGTCTGCTTGTCGGC
1 TTTGACC-TTGGAGACTTC----CTTACCTTTAGTCTGCCTGTCGGC
* * * **
190160 TTTGACACTAGG-GACTTCCTTACCTTTGGTCTGCCTATCAAC
1 TTTGAC-CTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
190202 TTTGACCTTGGAGACTTCCT
1 TTTGACCTTGGAGACTTCCT
190222 GATTTTTGGT
Statistics
Matches: 1192, Mismatches: 338, Indels: 94
0.73 0.21 0.06
Matches are distributed among these distances:
40 1 0.00
41 43 0.04
42 1088 0.91
43 26 0.02
44 2 0.00
45 24 0.02
46 8 0.01
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.39
Consensus pattern (42 bp):
TTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
Found at i:190370 original size:42 final size:42
Alignment explanation
Indices: 190270--191547 Score: 481
Period size: 42 Copynumber: 30.4 Consensus size: 42
190260 TCCTAACGTT
* * * * * * * *
190270 TTTGACCATGGAGAGTTCCTTACCATTAGTTTGCCTATCAAC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * *
190312 TTTGATCTTGGTGACTTCTTTACCTTTAGTCTACCTATCGAC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * ** * * *
190354 TTTGACCCTAGAGACTT-TCATATTTTTAGTCTGCCTGT-TAGC
1 TTTGACCTTAGAGACTTCT-TTACCTTTAGTCTACCTATCGA-C
* * * * * * * **
190396 TTTGACCTTAGAAACTTCCTTACCTTTAATTTGCTTATTGGT
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * ** * *
190438 TTTGACCTT-GAAGACTACTTTAGCTTTAGT-TTGCTCGTCGGC
1 TTTGACCTTAG-AGACTTCTTTACCTTTAGTCTACCT-ATCGAC
* * * ** * *
190480 TTTAACCTTAGAGACTTCCTAACCTAAAGTCTACCTGTCGGC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * * * *
190522 TTTGACTTTGGAGACTTCCTTACCTTTAGTCTAGCTATCGGC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * * * * **
190564 TTTGACCTTGGAGACTT-TCTTACTTTTAGTTTGCCTATAGGT
1 TTTGACCTTAGAGACTTCT-TTACCTTTAGTCTACCTATCGAC
* ** * * *
190606 TTTGACCCTAGTTACTTTTTTACCTTTAGTCTACTTGTC-AGC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGA-C
* **
190648 TTTAACCTTAGAGACTT-TTTCCACCTTTTA-TCTACCTATCGGG
1 TTTGACCTTAGAGACTTCTTT--ACC-TTTAGTCTACCTATCGAC
* * * * * * *
190691 TTTAACACTCAAAG-CTTCTTAACTTTTAGTCTGCCTATCAAC
1 TTTGAC-CTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * * * *
190733 TTTAACCCTAGAAACTTGC-TTACCTTTAGTCTGCCTATCGTC
1 TTTGACCTTAGAGACTT-CTTTACCTTTAGTCTACCTATCGAC
* * * *
190775 TTTGATCTTAGA-ACTT-TCTGACCTTTTGTCTACTTATC-AGC
1 TTTGACCTTAGAGACTTCT-TTACCTTTAGTCTACCTATCGA-C
* * * * *
190816 TTTGACCTTGGAGACATCTTTACATTTAGTCTACCTATTGGC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * ** * ** * *
190858 CTTAACCTCGGAGACTTCCTTGTCTTTACTCTACCTATCGAT
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* ** **
190900 TTTGACCTTGGAGACTTCTTTACCTTTAGT-TTTCTCATCGGT
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCT-ATCGAC
* * * * **
190942 TTTTACCCTAGAGACTTCCTTACCTCTAGTCTACCCGTCGAC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * * *
190984 TTTGACCTT-GAAAACTTAC-TTACCTTTAGGCTGCCTATTGAC
1 TTTGACCTTAG-AGACTT-CTTTACCTTTAGTCTACCTATCGAC
* * * * **
191026 TTTGACCTTGGAGACTTCCTTACCTTTAGTTTGCCCGTCGAC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * * *
191068 CTTGACCCTA-AGGACTTCCTTACCTTTAGTCTACCTATCGAA
1 TTTGACCTTAGA-GACTTCTTTACCTTTAGTCTACCTATCGAC
* * *
191110 TTTGACCTTAGAGACTTCTTTATCTTTAGTCTGCAC-GTC-AGC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTAC-CTATCGA-C
* * *
191152 TTTGACCTTGGAGAC-TCTTTTACCTTTAGTCTACATGTC-AGC
1 TTTGACCTTAGAGACTTC-TTTACCTTTAGTCTACCTATCGA-C
* * * *
191194 TTTGACCCTAGAGACTT-TCTTACCTTTAGTTTGCCTATCGGC
1 TTTGACCTTAGAGACTTCT-TTACCTTTAGTCTACCTATCGAC
* * * * * *
191236 TTTGACCTTGGAGAATT-TTTCACCTTTTGTCTGCTTGTC-AGC
1 TTTGACCTTAGAGACTTCTTT-ACCTTTAGTCTACCTATCGA-C
* * * * * * * *
191278 TTTGACCTTGGAGACATT-TTCATCTTTTGTCTGCTTGTCGGC
1 TTTGACCTTAGAGAC-TTCTTTACCTTTAGTCTACCTATCGAC
* * * * * * * * *
191320 CTTGACTTTGGAGACTTCCTGA-CTTTCAGTCTGCTTTTCGGC
1 TTTGACCTTAGAGACTTCTTTACCTTT-AGTCTACCTATCGAC
* * * * * * *
191362 TATGACCTTGGAGACATT-TTCATCTTTTGTCTGCCTGTC-AGC
1 TTTGACCTTAGAGAC-TTCTTTACCTTTAGTCTACCTATCGA-C
** * * * * * * *
191404 CATGACTTTGGAGACTTCTTTACTTTTAGTCTGCTTGTCGGC
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * * * * *
191446 TTTGACCTTGGAAACTTCCTTACCTTTAGTCTGCCTATTGAT
1 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
* * * * * *
191488 TTTGACCCTAAAGACTT-TCTTACCTATAGTGTGCCTGTCGAC
1 TTTGACCTTAGAGACTTCT-TTACCTTTAGTCTACCTATCGAC
* *
191530 TTTGACCCTAGGGACTTC
1 TTTGACCTTAGAGACTTC
191548 GTATGCCTAT
Statistics
Matches: 929, Mismatches: 253, Indels: 107
0.72 0.20 0.08
Matches are distributed among these distances:
41 66 0.07
42 808 0.87
43 44 0.05
44 11 0.01
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.41
Consensus pattern (42 bp):
TTTGACCTTAGAGACTTCTTTACCTTTAGTCTACCTATCGAC
Found at i:190419 original size:84 final size:84
Alignment explanation
Indices: 190270--191546 Score: 577
Period size: 84 Copynumber: 15.2 Consensus size: 84
190260 TCCTAACGTT
* * * * * * * * * * * *
190270 TTTGACCATGGAGAGTTCCTTACCATTAGTTTGCCTATCAACTTTGATCTTGGTGACTTCTTTAC
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTTAC
*
190335 CTTTAGTCTACCTATCGAC
66 CTTTAGTCTACCTATCGGC
* ** * *
190354 TTTGACCCTAGAGACTTTCATATTTTTAGTCTGCCTGTTAGCTTTGACCTTAGAAACTTCCTTAC
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTTAC
* * * * * *
190419 CTTTAATTTGCTTATTGGT
66 CTTTAGTCTACCTATCGGC
* * * * * *
190438 TTTGA-CCTTGAAGAC-TACTTTAGCTTTAGTTTG-CTCGTCGGCTTTAACCTTAGAGACTTCCT
1 TTTGACCCTAG-AGACTTTC-TTACCTTTAGTCTGCCT-GTCAGCTTTGACCTTAGAGACTTCCT
* ** *
190500 AACCTAAAGTCTACCTGTCGGC
63 TACCTTTAGTCTACCTATCGGC
** * * * * * *
190522 TTTGACTTTGGAGACTTCCTTACCTTTAGTCTAG-CTATCGGCTTTGACCTTGGAGACTTTCTTA
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCT-GCCTGTCAGCTTTGACCTTAGAGACTTCCTTA
* * * * *
190586 CTTTTAGTTTGCCTATAGGT
65 CCTTTAGTCTACCTATCGGC
** * * * * *
190606 TTTGACCCTAGTTACTTTTTTACCTTTAGTCTACTTGTCAGCTTTAACCTTAGAGACTT-TTTCC
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTT--
*
190670 ACCTTTTA-TCTACCTATCGGG
64 ACC-TTTAGTCTACCTATCGGC
* * * * * * * * * *
190691 TTTAACACTCAAAG-C-TTCTTAACTTTTAGTCTGCCTATCAACTTTAACCCTAGAAACTTGCTT
1 TTTGACCCT-AGAGACTTTCTT-ACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTT
* *
190754 ACCTTTAGTCTGCCTATCGTC
64 ACCTTTAGTCTACCTATCGGC
* * * * * * * * * *
190775 TTTGATCTTAGA-ACTTTCTGACCTTTTGTCTACTTATCAGCTTTGACCTTGGAGACATCTTTAC
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTTAC
* *
190839 ATTTAGTCTACCTATTGGC
66 CTTTAGTCTACCTATCGGC
* * * * ** * * * * * *
190858 CTT-AACCTCGGAGACTTCCTTGTCTTTACTCTACCTATC-GATTTTGACCTTGGAGACTTCTTT
1 TTTGACCCT-AGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAGAGACTTCCTT
** *
190921 ACCTTTAGT-TTTCTCATCGGT
64 ACCTTTAGTCTACCT-ATCGGC
* * * * * * *
190942 TTTTACCCTAGAGACTTCCTTACCTCTAGTCTACCCGTC-GACTTTGACCTT-GAAAACTTACTT
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAG-AGACTTCCTT
* * * *
191005 ACCTTTAGGCTGCCTATTGAC
64 ACCTTTAGTCTACCTATCGGC
* * * * * * *
191026 TTTGACCTTGGAGACTTCCTTACCTTTAGTTTGCCCGTC-GACCTTGACCCTA-AGGACTTCCTT
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAGA-GACTTCCTT
**
191089 ACCTTTAGTCTACCTATCGAA
64 ACCTTTAGTCTACCTATCGGC
* * * *
191110 TTTGACCTTAGAGAC-TTCTTTATCTTTAGTCTGCAC-GTCAGCTTTGACCTTGGAGAC-TCTTT
1 TTTGACCCTAGAGACTTTC-TTACCTTTAGTCTGC-CTGTCAGCTTTGACCTTAGAGACTTC-CT
* * *
191172 TACCTTTAGTCTACATGTCAGC
63 TACCTTTAGTCTACCTATCGGC
* * * * * *
191194 TTTGACCCTAGAGACTTTCTTACCTTTAGTTTGCCTATCGGCTTTGACCTTGGAGAATT-TTTCA
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTT-A
* * * * *
191258 CCTTTTGTCTGCTTGTCAGC
65 CCTTTAGTCTACCTATCGGC
* * * * * * * * * * *
191278 TTTGACCTTGGAGACATTT-TCATCTTTTGTCTGCTTGTCGGCCTTGACTTTGGAGACTTCCTGA
1 TTTGACCCTAGAGAC-TTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTTA
* * *
191342 -CTTTCAGTCTGCTTTTCGGC
65 CCTTT-AGTCTACCTATCGGC
* * * * * * ** * * *
191362 TATGACCTTGGAGACATTT-TCATCTTTTGTCTGCCTGTCAGCCATGACTTTGGAGACTTCTTTA
1 TTTGACCCTAGAGAC-TTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTTA
* * * *
191426 CTTTTAGTCTGCTTGTCGGC
65 CCTTTAGTCTACCTATCGGC
* * * * * * * * * *
191446 TTTGACCTTGGAAACTTCCTTACCTTTAGTCTGCCTAT-TGATTTTGACCCTAAAGACTTTCTTA
1 TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAG-CTTTGACCTTAGAGACTTCCTTA
* * * * *
191510 CCTATAGTGTGCCTGTCGAC
65 CCTTTAGTCTACCTATCGGC
*
191530 TTTGACCCTAGGGACTT
1 TTTGACCCTAGAGACTT
191547 CGTATGCCTA
Statistics
Matches: 909, Mismatches: 244, Indels: 80
0.74 0.20 0.06
Matches are distributed among these distances:
82 3 0.00
83 89 0.10
84 732 0.81
85 78 0.09
86 7 0.01
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.41
Consensus pattern (84 bp):
TTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTTAC
CTTTAGTCTACCTATCGGC
Found at i:191599 original size:42 final size:42
Alignment explanation
Indices: 191551--192286 Score: 185
Period size: 42 Copynumber: 17.5 Consensus size: 42
191541 GGACTTCGTA
* *
191551 TGCCTATAGGGTTTGACCTGAGAGACTTCTTTAGCTTTAGTC
1 TGCCTATAGGCTTTGACCTGAGAGACTTCTTTAACTTTAGTC
* *
191593 TGCCTATTGGCTTTGACCTTG-GAGACTTCCTTAACTTTAGTC
1 TGCCTATAGGCTTTGACC-TGAGAGACTTCTTTAACTTTAGTC
* * *
191635 TG-CTCATCGGCTTTGACTCT-AGAGACTT-TTTCACCTTTAGTT
1 TGCCT-ATAGGCTTTGAC-CTGAGAGACTTCTTT-AACTTTAGTC
* * *
191677 TTCC-AGTCGG-TTGTGACACTG-GAGACTT-TCTTACCTTTAGTC
1 TGCCTA-TAGGCTT-TGAC-CTGAGAGACTTCT-TTAACTTTAGTC
* * * * * * * *
191719 TGCTTGTCA-GCTTTGGCTTTG-GGGACTTCTTTACCTTCAGTT
1 TGCCTAT-AGGCTTTGAC-CTGAGAGACTTCTTTAACTTTAGTC
* * * * *
191761 TGCCTATCGGCTTTGGCCCT-AAAGACTTCTTTACCTTTAGTT
1 TGCCTATAGGCTTT-GACCTGAGAGACTTCTTTAACTTTAGTC
** * * *
191803 TATCTATCGACTTTGACCCT-AGAGACTTCCTTACTTACCTTTAGTC
1 TGCCTATAGGCTTTGA-CCTGAGAGACTT-C-T--TTAACTTTAGTC
* * * * * * *
191849 TGCTTGTCGGCTTTAACCTTAGAGACTTCCTTACCTTTAGTC
1 TGCCTATAGGCTTTGACCTGAGAGACTTCTTTAACTTTAGTC
*** * * * * *
191891 TATTTGTTGGCTTTGACCTTAGAGACTTCCTTACCTTTAGTC
1 TGCCTATAGGCTTTGACCTGAGAGACTTCTTTAACTTTAGTC
* * * *
191933 TCCCTATCA-GCTTTGACCTTG-GAGACTTCCTCACCTTTAGTC
1 TGCCTAT-AGGCTTTGACC-TGAGAGACTTCTTTAACTTTAGTC
* * * * **
191975 TTCCTATCA-GCTTTAACCTTA-AGGATTTC-CAAACCTTTAGTC
1 TGCCTAT-AGGCTTTGACCTGAGA-GACTTCTTTAA-CTTTAGTC
* * * * * *
192017 TTCCTACCA-GCTTTGACGTTG-GAAATTTCTTTACCTTTAGTC
1 TGCCTA-TAGGCTTTGAC-CTGAGAGACTTCTTTAACTTTAGTC
* * * * * *
192059 TACCTATTGACTTTGACCTTG-GAGACTTC-CTACCTTTAGTT
1 TGCCTATAGGCTTTGACC-TGAGAGACTTCTTTAACTTTAGTC
* * * * * * *
192100 TACTTATCGGTTTTGACC-CAGGTGACTTCTTTACCTTTAGTC
1 TGCCTATAGGCTTTGACCTGA-GAGACTTCTTTAACTTTAGTC
* * *
192142 TGCCTGTCA-GCTTTGACCTTGA-AGACTT-TTTCACCTTTTGTC
1 TGCCTAT-AGGCTTTGACC-TGAGAGACTTCTTT-AACTTTAGTC
* ** * * **
192184 TACCTATTTGCTTTGACACT-AGAGACATCCTTATTTTTAGTC
1 TGCCTATAGGCTTTGAC-CTGAGAGACTTCTTTAACTTTAGTC
** * * * * * *
192226 ACCCTGTCGGCTTTAACCCTGA-AAACATCTTTACCTTTAGTC
1 TGCCTATAGGCTTTGA-CCTGAGAGACTTCTTTAACTTTAGTC
* *
192268 TGTCTATCGGCTTTGACCT
1 TGCCTATAGGCTTTGACCT
192287 TGGAAACTTC
Statistics
Matches: 531, Mismatches: 116, Indels: 95
0.72 0.16 0.13
Matches are distributed among these distances:
41 49 0.09
42 426 0.80
43 21 0.04
44 2 0.00
45 4 0.01
46 29 0.05
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.41
Consensus pattern (42 bp):
TGCCTATAGGCTTTGACCTGAGAGACTTCTTTAACTTTAGTC
Found at i:191650 original size:116 final size:116
Alignment explanation
Indices: 191446--191662 Score: 258
Period size: 116 Copynumber: 1.9 Consensus size: 116
191436 GCTTGTCGGC
* * *
191446 TTTGACCTTGGAAACTTCCTTACCTTTAGTCTGCCTATTGATTTTGACCCTAAAGACTTTCTTAC
1 TTTGACCTTGGAAACTTCCTTACCTTTAGTCTGCCTATTGACTTTGACCCTAAAGACTTCCTTAA
* * *
191511 CTATAGTGTGCCTGTCGACTTTGACCCTAGGGACTTCGTATGCCTATAGGG
66 CTATAGTCTGCCTATCGACTTTGACCCTAGAGACTTCGTATGCCTATAGGG
* * * * * **
191562 TTTGACC-TGAGAGACTTCTTTAGCTTTAGTCTGCCTATTGGCTTTGACCTTGGAGACTTCCTTA
1 TTTGACCTTG-GAAACTTCCTTACCTTTAGTCTGCCTATTGACTTTGACCCTAAAGACTTCCTTA
* * *
191626 ACTTTAGTCTG-CTCATCGGCTTTGACTCTAGAGACTT
65 ACTATAGTCTGCCT-ATCGACTTTGACCCTAGAGACTT
191663 TTTCACCTTT
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
115 4 0.05
116 79 0.95
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (116 bp):
TTTGACCTTGGAAACTTCCTTACCTTTAGTCTGCCTATTGACTTTGACCCTAAAGACTTCCTTAA
CTATAGTCTGCCTATCGACTTTGACCCTAGAGACTTCGTATGCCTATAGGG
Found at i:191958 original size:84 final size:84
Alignment explanation
Indices: 191562--192502 Score: 526
Period size: 84 Copynumber: 11.0 Consensus size: 84
191552 GCCTATAGGG
* * * * * *
191562 TTTGACCTGAGAGACTTCTTTAGCTTTAGTCTGCCTATTGGCTTTGACCTTGGAGACTTCCTTAA
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTAC
* *
191627 CTTTAGTCT-GCTCATCGGC
66 CTTTAGTCTACCT-GTCGGC
* * * *
191646 TTTGA-CTCTAGAGACTT-TTTCACCTTTAGTTTTCC-AGTCGG-TTGTGACAC-TGGAGACTTT
1 TTTGACCT-TAGAGACTTCCTT-ACCTTTAGTCTACCTA-TCGGCTT-TGAC-CTTGGAGACTTC
* * *
191706 CTTACCTTTAGTCTGCTTGTCAGC
61 CTTACCTTTAGTCTACCTGTCGGC
* * * * * * * * * * ** *
191730 TTTGGCTTTGGGGACTTCTTTACCTTCAGTTTGCCTATCGGCTTTGGCCCTAAAGACTTCTTTAC
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTAC
* * * *
191795 CTTTAGTTTATCTATCGAC
66 CTTTAGTCTACCTGTCGGC
* * * * * *
191814 TTTGACCCTAGAGACTTCCTTACTTACCTTTAGTCTGCTTGTCGGCTTTAACCTTAGAGACTTCC
1 TTTGACCTTAGAGACTT-C---CTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCC
** *
191879 TTACCTTTAGTCTATTTGTTGGC
62 TTACCTTTAGTCTACCTGTCGGC
* * *
191902 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTCCCTATCAGCTTTGACCTTGGAGACTTCCTCAC
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTAC
* * *
191967 CTTTAGTCTTCCTATCAGC
66 CTTTAGTCTACCTGTCGGC
* * ** * * * * * * *
191986 TTTAACCTTA-AGGATTTCCAAACCTTTAGTCTTCCTACCAGCTTTGACGTTGGAAATTTCTTTA
1 TTTGACCTTAGA-GACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTA
* * *
192050 CCTTTAGTCTACCTATTGAC
65 CCTTTAGTCTACCTGTCGGC
* * * * ** * *
192070 TTTGACCTTGGAGACTTCC-TACCTTTAGTTTACTTATCGGTTTTGACCCAGGTGACTTCTTTAC
1 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTAC
* *
192134 CTTTAGTCTGCCTGTCAGC
66 CTTTAGTCTACCTGTCGGC
* * ** * *
192153 TTTGACCTT-GAAGACTT-TTTCACCTTTTGTCTACCTATTTGCTTTGACAC-TAGAGACATCCT
1 TTTGACCTTAG-AGACTTCCTT-ACCTTTAGTCTACCTATCGGCTTTGAC-CTTGGAGACTTCCT
**
192215 TATTTTTAGTC-ACCCTGTCGGC
63 TACCTTTAGTCTA-CCTGTCGGC
* * * * * ** *
192237 TTTAACCCT-GAAAACATCTTTACCTTTAGTCTGTCTATCGGCTTTGACCTTGGAAACTTCCTTG
1 TTTGACCTTAG-AGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTT-
* * * *
192301 GAGACTTCCTGACCTTTTGCCTGCTAGTCGGC
64 -A-CCTT--T-A--GTCT-AC--CT-GTCGGC
* * * * * ** **
192333 TTTGACCCT-GAAAACTTACTTACCTTTAATCTACCTGTCAACTTTGACCTTGGAGACTTTATTA
1 TTTGACCTTAG-AGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTA
192397 CCTTTAGTCTACCTGTCGGC
65 CCTTTAGTCTACCTGTCGGC
* * * * * *
192417 TTTTACCCTAGAGACTT-CTTAACTTTTAGTCTACCTATTGGCTTTGACCTTGGAAACTTTCTTA
1 TTTGACCTTAGAGACTTCCTT-ACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTA
* * *
192481 CCTTTAGTTTGCCTGTTGGC
65 CCTTTAGTCTACCTGTCGGC
192501 TT
1 TT
192503 ACCTTTAGTC
Statistics
Matches: 656, Mismatches: 162, Indels: 78
0.73 0.18 0.09
Matches are distributed among these distances:
82 1 0.00
83 76 0.12
84 419 0.64
85 18 0.03
86 1 0.00
87 4 0.01
88 69 0.11
89 1 0.00
90 2 0.00
91 1 0.00
92 1 0.00
93 4 0.01
94 1 0.00
95 2 0.00
96 56 0.09
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.41
Consensus pattern (84 bp):
TTTGACCTTAGAGACTTCCTTACCTTTAGTCTACCTATCGGCTTTGACCTTGGAGACTTCCTTAC
CTTTAGTCTACCTGTCGGC
Found at i:192225 original size:209 final size:209
Alignment explanation
Indices: 191837--192298 Score: 453
Period size: 209 Copynumber: 2.2 Consensus size: 209
191827 ACTTCCTTAC
* * * * * * * * *
191837 TTACCTTTAGTCTGCTTGTCGGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTATTTGTTGGC
1 TTACCTTTAGTCTACCTATCGACTTTGACCTTGGAGACTTCC-TACCTTTAGTCTACTTATCGGC
* *
191902 TTTGACCTTAGAGACTTCCTTACCTTTAGTCTCCCTATCAGCTTTGACCTTGGAGACTTCCTCAC
65 TTTGACCTCAGAGACTTCCTTACCTTTAGTCTCCCTATCAGCTTTGACCTTGAAGACTTCCTCAC
* ** ** *
191967 CTTTAGTCTTCCTATCAGCTTTAACCTTAAGGATTTCCAAACCTTTAGTCTTCCTACCAGCTTTG
130 CTTTAGTCTACCTATCAGCTTTAACCTTAAGGACATCCAAACCTTTAGTCACCCTACCAGCTTTA
** * **
192032 ACGTTGGAAATTTCT
195 ACCCTGAAAACATCT
* * *
192047 TTACCTTTAGTCTACCTATTGACTTTGACCTTGGAGACTTCCTACCTTTAGTTTACTTATCGGTT
1 TTACCTTTAGTCTACCTATCGACTTTGACCTTGGAGACTTCCTACCTTTAGTCTACTTATCGGCT
* * * * **
192112 TTGACC-CAGGTGACTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTGAAGACTTTTTCAC
66 TTGACCTCA-GAGACTTCCTTACCTTTAGTCTCCCTATCAGCTTTGACCTTGAAGACTTCCTCAC
* ** * ** ** ** *
192176 CTTTTGTCTACCTATTTGCTTTGACAC-T-AGAGACATCCTTATTTTTAGTCACCCTGTCGGCTT
130 CTTTAGTCTACCTATCAGCTTTAAC-CTTAAG-GACATCCAAACCTTTAGTCACCCTACCAGCTT
192239 TAACCCTGAAAACATCT
193 TAACCCTGAAAACATCT
** * *
192256 TTACCTTTAGTCTGTCTATCGGCTTTGACCTTGGAAACTTCCT
1 TTACCTTTAGTCTACCTATCGACTTTGACCTTGGAGACTTCCT
192299 TGGAGACTTC
Statistics
Matches: 202, Mismatches: 47, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
208 3 0.01
209 163 0.81
210 36 0.18
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.41
Consensus pattern (209 bp):
TTACCTTTAGTCTACCTATCGACTTTGACCTTGGAGACTTCCTACCTTTAGTCTACTTATCGGCT
TTGACCTCAGAGACTTCCTTACCTTTAGTCTCCCTATCAGCTTTGACCTTGAAGACTTCCTCACC
TTTAGTCTACCTATCAGCTTTAACCTTAAGGACATCCAAACCTTTAGTCACCCTACCAGCTTTAA
CCCTGAAAACATCT
Found at i:192431 original size:42 final size:42
Alignment explanation
Indices: 192327--192502 Score: 158
Period size: 42 Copynumber: 4.2 Consensus size: 42
192317 TTGCCTGCTA
* *
192327 GTCGGCTTTGACCCTGAAAAC-TTACTTACCTTTAATCTACCT
1 GTCGGCTTTGACCCTGGAAACTTTA-TTACCTTTAGTCTACCT
** * *
192369 GTCAACTTTGACCTTGGAGACTTTATTACCTTTAGTCTACCT
1 GTCGGCTTTGACCCTGGAAACTTTATTACCTTTAGTCTACCT
* * * * *
192411 GTCGGCTTTTACCCTAGAGACTTCT-TAACTTTTAGTCTACCT
1 GTCGGCTTTGACCCTGGAAACTT-TATTACCTTTAGTCTACCT
* * * * * *
192453 ATTGGCTTTGACCTTGGAAACTTTCTTACCTTTAGTTTGCCT
1 GTCGGCTTTGACCCTGGAAACTTTATTACCTTTAGTCTACCT
*
192495 GTTGGCTT
1 GTCGGCTT
192503 ACCTTTAGTC
Statistics
Matches: 107, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.01
42 102 0.95
43 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.41
Consensus pattern (42 bp):
GTCGGCTTTGACCCTGGAAACTTTATTACCTTTAGTCTACCT
Found at i:192590 original size:106 final size:107
Alignment explanation
Indices: 192394--192594 Score: 260
Period size: 106 Copynumber: 1.9 Consensus size: 107
192384 GGAGACTTTA
* ** *
192394 TTACCTTTAGTCTACCTGTCGGCTTTTACCCTAGAGACTTCTTAACTTTTAGTCTACCTATTGGC
1 TTACCTTTAGTCTACATGTCAACTTTGACCCTAGAGACTTCTTAACTTTTAGTCTACCTATTGGC
* * * *
192459 TTTGACCTTGGAAACTTTCTTACCTTTAGTTTGCCTGTTGGC
66 TTTAACCATAGAAACTTCCTTACCTTTAGTTTGCCTGTTGGC
* * ** * *
192501 TTACCTTTAGTCTACATGTCAACTTTGACCGTGGAGACTTCTT-TTTTTTAGTCTGCCTGTTGGC
1 TTACCTTTAGTCTACATGTCAACTTTGACCCTAGAGACTTCTTAACTTTTAGTCTACCTATTGGC
*
192565 TTTAACCATAGAGACTTCCTTACCTTTAGT
66 TTTAACCATAGAAACTTCCTTACCTTTAGT
192595 CTACTTGTCG
Statistics
Matches: 79, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
106 42 0.53
107 37 0.47
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (107 bp):
TTACCTTTAGTCTACATGTCAACTTTGACCCTAGAGACTTCTTAACTTTTAGTCTACCTATTGGC
TTTAACCATAGAAACTTCCTTACCTTTAGTTTGCCTGTTGGC
Found at i:192596 original size:42 final size:42
Alignment explanation
Indices: 192547--192681 Score: 126
Period size: 42 Copynumber: 3.1 Consensus size: 42
192537 ACTTCTTTTT
* *
192547 TTTAGTCTGCCTGTTGGCTTTAACCATAGAGACTTCCTTACC
1 TTTAGTCTGCCTGTTGGCTTTGACCTTAGAGACTTCCTTACC
* * * * *
192589 TTTAGTCTACTTGTCGACTTTGACCTTGGAGACTTCCTTACTTACC
1 TTTAGTCTGCCTGTTGGCTTTGACCTTAGAGACTT-C---CTTACC
* * * **
192635 TTTGGTCTGCCTATTGGCTTTGACCTTAAAGACTTTTTTACC
1 TTTAGTCTGCCTGTTGGCTTTGACCTTAGAGACTTCCTTACC
192677 TTTAG
1 TTTAG
192682 CCTCCTTATC
Statistics
Matches: 71, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
42 37 0.52
43 1 0.01
46 33 0.46
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (42 bp):
TTTAGTCTGCCTGTTGGCTTTGACCTTAGAGACTTCCTTACC
Found at i:192629 original size:148 final size:149
Alignment explanation
Indices: 192351--192629 Score: 375
Period size: 148 Copynumber: 1.9 Consensus size: 149
192341 TGAAAACTTA
* *
192351 CTTACCTTTAATCTACCTGTCAACTTTGACCTTGGAGACTTTATTACCTTTAGTCTACCTGTCGG
1 CTTACCTTTAATCTACATGTCAACTTTGACCGTGGAGACTTTATTACCTTTAGTCTACCTGTCGG
* * * * * *
192416 CTTTTACCCTAGAGACTTCTTAACTTTTAGTCTACCTATTGGCTTTGACCTTGGAAACTTTCTTA
66 CTTTAACCATAGAGACTTCTTAACCTTTAGTCTACCTATCGACTTTGACCTTGGAAACTTCCTTA
192481 CCTTTAGTTTGCCTGTTGG
131 CCTTTAGTTTGCCTGTTGG
* ** * *
192500 CTTACCTTTAGTCTACATGTCAACTTTGACCGTGGAGACTTCT-TT-TTTTTAGTCTGCCTGTTG
1 CTTACCTTTAATCTACATGTCAACTTTGACCGTGGAGACTT-TATTACCTTTAGTCTACCTGTCG
* * *
192563 GCTTTAACCATAGAGACTTCCTT-ACCTTTAGTCTACTTGTCGACTTTGACCTTGGAGACTTCCT
65 GCTTTAACCATAGAGACTT-CTTAACCTTTAGTCTACCTATCGACTTTGACCTTGGAAACTTCCT
192627 TAC
129 TAC
192630 TTACCTTTGG
Statistics
Matches: 112, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
148 68 0.61
149 43 0.38
150 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (149 bp):
CTTACCTTTAATCTACATGTCAACTTTGACCGTGGAGACTTTATTACCTTTAGTCTACCTGTCGG
CTTTAACCATAGAGACTTCTTAACCTTTAGTCTACCTATCGACTTTGACCTTGGAAACTTCCTTA
CCTTTAGTTTGCCTGTTGG
Found at i:192681 original size:88 final size:83
Alignment explanation
Indices: 192500--192700 Score: 222
Period size: 88 Copynumber: 2.4 Consensus size: 83
192490 TGCCTGTTGG
* * * *
192500 CTTACCTTTAGTCTACATGTCAACTTTGACCGTGGAGACTTCTTTTTTTTAGTCTGCCTGTTGGC
1 CTTACCTTTAGTCTACTTGTCGACTTTGACCGTGGAGACTTCTTTTCTTTAGTCTGCCTATTGGC
*
192565 TTTAACCATAGAGACTTC
66 TTTAACCATAAAGACTTC
* *
192583 CTTACCTTTAGTCTACTTGTCGACTTTGACCTTGGAGACTTCCTTACTTACCTTTGGTCTGCCTA
1 CTTACCTTTAGTCTACTTGTCGACTTTGACCGTGGAGACTT-CTT--TT--CTTTAGTCTGCCTA
* * *
192648 TTGGCTTTGACCTTAAAGACTTT
61 TTGGCTTTAACCATAAAGACTTC
* * * * *
192671 TTTACCTTTAGCCTCCTTATCGGCTTTGAC
1 CTTACCTTTAGTCTACTTGTCGACTTTGAC
192701 TTTAATGACT
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
83 38 0.39
84 3 0.03
86 2 0.02
88 55 0.56
ACGTcount: A:0.17, C:0.25, G:0.16, T:0.42
Consensus pattern (83 bp):
CTTACCTTTAGTCTACTTGTCGACTTTGACCGTGGAGACTTCTTTTCTTTAGTCTGCCTATTGGC
TTTAACCATAAAGACTTC
Found at i:192824 original size:42 final size:42
Alignment explanation
Indices: 192762--193724 Score: 671
Period size: 42 Copynumber: 23.2 Consensus size: 42
192752 TTCCTACTTT
* * * * * *
192762 TTTGACCCTGGAGAGC-TCCTTACATTTAGTTTGCTTATCGAC
1 TTTGACCCTAGAGA-CTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *
192804 TTTGATCCTCGAGACTTCCTTACCTTTAGTCTACTTGTC-AC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * *
192845 TTTGACCCTAGATACTTCTTTGCCTTTAGTCTGCCTGTCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *
192887 TTTAACCTTAGAGGCTTCCTAACCTTTAGTCTGCCTGTTGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* ** * *
192929 TTTGACCAT-GATGACTTATTTACCTTTAGTCTACCTATCGGC
1 TTTGACCCTAGA-GACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * *
192971 TTTGACCCTAGAGATTTCCTGACTTTTGGTCTGCCTGTCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * *
193013 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTACCTATCGAC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *
193055 TTTGACCTTGGAGACTTCCTTACTTTTAGTCTGCTTATCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * *
193097 TTTGACCCTAGAGACTTCCTTTCCTTTAGTCTGCTTGTCAGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * *
193139 TTTGACCTTAGAGACTTCCTTACCTTTAGTATGCTTGTCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *
193181 TTTGGCCCTAAAGACTTCC-TACCCTTTAGTCTACCTATTGGC
1 TTTGACCCTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTCGGC
* * * * *
193223 TTTGACCTTGGAGATTTCCTTACCTTTAGTCTGCCTATTGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *** **
193265 TTTGACCTTGGTGACTT-CTTGACCTTTAGTCTACCCACCAGAA
1 TTTGACCCTAGAGACTTCCTT-ACCTTTAGTCTGCCTGTC-GGC
* * * * * * * *
193308 TTTCACCTTGGAGACTT-TTTCACCTTTTGTTTGCCTATCGGT
1 TTTGACCCTAGAGACTTCCTT-ACCTTTAGTCTGCCTGTCGGC
* * * * ** **
193350 TTTGACCTTGGAAACTTCCTTACCTTTAGTCTACCAATCGAT
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *
193392 TTTGACCTTAGAGACTTTCTTACCTATAGTGTGCCTGTCAGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * *
193434 TTTGACCCTAG-G-------GA-CTTT-GTATGCCTATCGGG
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * ** * *
193466 TTTGACTCGAGAGATTTTTTTAGCTTTAGTCTGCCTATCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * *
193508 TTTTACCTTGGAGACTTCCTTACCTTTTGTCTGCTTGTCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * *
193550 TTTGACCCTAGAGACTTCGTTACCTTTAGTTTGCTTGCCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* * * * * **
193592 TTTGAGCATGGAGACTTCCTTACCCTTAGTCTACCTGTCAAC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
* ** * * *
193634 TTTGACCTTAGAGACTTTTTTACCCTTAGTTTGCCTATCGGC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
** * * * *
193676 TTTGACCCTAGAGACTTTTTTACCTTTTGTTTGCCCGTCGAC
1 TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
193718 TTTGACC
1 TTTGACC
193725 TGGGAGACTC
Statistics
Matches: 729, Mismatches: 173, Indels: 38
0.78 0.18 0.04
Matches are distributed among these distances:
32 19 0.03
33 4 0.01
34 1 0.00
40 1 0.00
41 47 0.06
42 620 0.85
43 37 0.05
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (42 bp):
TTTGACCCTAGAGACTTCCTTACCTTTAGTCTGCCTGTCGGC
Found at i:194286 original size:16 final size:16
Alignment explanation
Indices: 194246--194299 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
194236 GTCAGGTTAT
194246 TAAAAA-ATAA-AAAA
1 TAAAAATATAATAAAA
* *
194260 T-ATAATCATAATTAAA
1 TAAAAAT-ATAATAAAA
194276 TAAAAATATAATAAAA
1 TAAAAATATAATAAAA
194292 TAAAAATA
1 TAAAAATA
194300 ATAGTAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
13 3 0.09
14 1 0.03
15 4 0.12
16 20 0.62
17 4 0.12
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAAATATAATAAAA
Found at i:194298 original size:22 final size:23
Alignment explanation
Indices: 194248--194300 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
194238 CAGGTTATTA
*
194248 AAAAATAAAAAATATAATCATAAT
1 AAAAAT-AAAAATATAATCAAAAT
*
194272 -TAAATAAAAATATAAT-AAAAT
1 AAAAATAAAAATATAATCAAAAT
194293 AAAAATAA
1 AAAAATAA
194301 TAGTAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 4 0.16
22 17 0.68
23 4 0.16
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (23 bp):
AAAAATAAAAATATAATCAAAAT
Found at i:194771 original size:32 final size:30
Alignment explanation
Indices: 194735--194793 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
194725 GAAAACAAAT
194735 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
194767 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
194794 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:195092 original size:13 final size:13
Alignment explanation
Indices: 195074--195099 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
195064 CAATTTTTTG
195074 TGTATCGATACAT
1 TGTATCGATACAT
195087 TGTATCGATACAT
1 TGTATCGATACAT
195100 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:195114 original size:32 final size:33
Alignment explanation
Indices: 195054--195117 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
195044 TACAAGCCAA
** *
195054 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
195087 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
195118 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:197664 original size:13 final size:13
Alignment explanation
Indices: 197646--197683 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
197636 ATAATCCCCC
*
197646 TGTATCAATACAG
1 TGTATCGATACAG
*
197659 TGTATCGATACAT
1 TGTATCGATACAG
197672 TGTATCGATACA
1 TGTATCGATACA
197684 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:199778 original size:15 final size:15
Alignment explanation
Indices: 199758--199788 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
199748 ATTTCGTTTG
*
199758 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
199773 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
199788 G
1 G
199789 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:201620 original size:21 final size:21
Alignment explanation
Indices: 201591--201635 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
201581 AAGTTTTTAT
*
201591 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
201611 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
201633 TTT
1 TTT
201636 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:203860 original size:20 final size:20
Alignment explanation
Indices: 203835--203886 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
203825 TACAAGCCAA
** *
203835 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTGG
203855 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
203874 TGTATCGATACAA
1 TGTATCGATACAA
203887 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:203892 original size:19 final size:18
Alignment explanation
Indices: 203835--203892 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
203825 TACAAGCCAA
*
203835 TGTATCGATACAATTTTTTG
1 TGTATCGATACAA--TTTGG
*
203855 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
203874 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
203893 CTACTGCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.58
20 12 0.36
21 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:204249 original size:3 final size:3
Alignment explanation
Indices: 204241--204282 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
204231 AGATCCTAAC
* *
204241 AAT AAT AAT AAT AGT AAT AAT AAT AAT AGT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
204283 TAAAAAAGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:204261 original size:15 final size:15
Alignment explanation
Indices: 204241--204282 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
204231 AGATCCTAAC
204241 AATAATAATAATAGT
1 AATAATAATAATAGT
204256 AATAATAATAATAGT
1 AATAATAATAATAGT
204271 AATAATAATAAT
1 AATAATAATAAT
204283 TAAAAAAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (15 bp):
AATAATAATAATAGT
Found at i:204867 original size:24 final size:23
Alignment explanation
Indices: 204838--204892 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
204828 GGCAGTAAAC
204838 AAAAAAGGCAAGCAAAGAAAGAAA
1 AAAAAAGGCAAGCAAA-AAAGAAA
* *
204862 AAAAAACAGCAAGCAAATAAGAAA
1 AAAAAA-GGCAAGCAAAAAAGAAA
204886 AAAAAAG
1 AAAAAAG
204893 TTCACGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.73, C:0.09, G:0.16, T:0.02
Consensus pattern (23 bp):
AAAAAAGGCAAGCAAAAAAGAAA
Found at i:204873 original size:25 final size:24
Alignment explanation
Indices: 204845--204891 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
204835 AACAAAAAAG
204845 GCAAGCAAAGAAAGAAAAAAAAACA
1 GCAAGCAAA-AAAGAAAAAAAAACA
*
204870 GCAAGCAAATAAGAAAAAAAAA
1 GCAAGCAAAAAAGAAAAAAAAA
204892 GTTCACGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.72, C:0.11, G:0.15, T:0.02
Consensus pattern (24 bp):
GCAAGCAAAAAAGAAAAAAAAACA
Done.