Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold93
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1685797
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 216 characters in sequence are not A, C, G, or T
File 7 of 14
Found at i:768993 original size:57 final size:58
Alignment explanation
Indices: 768876--769351 Score: 692
Period size: 57 Copynumber: 8.2 Consensus size: 58
768866 TGTTCATCCC
* * *
768876 TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCTCACGAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
768934 TTTCAAAGCCCACGAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * * * *
768991 TTTTAAAACCCACAAATCAGTGGCACTCTTTTCAAAGCCCATAAGACAGTGGCAC-CT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
*
769048 TTTCAAAGCCCATAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
*
769106 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAATGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
769164 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCTATAATTTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
769221 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
769278 TTTCAAAGCCCTACACAAGTCGGTGGCAACTCTTTTCAAACCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAG-CC--CACAAGTCAGTGGC-ACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
769339 TTTCAAAGCCCAC
1 TTTCAAAGCCCAC
769352 TGTAGACACC
Statistics
Matches: 376, Mismatches: 35, Indels: 14
0.88 0.08 0.03
Matches are distributed among these distances:
57 186 0.49
58 138 0.37
60 15 0.04
61 11 0.03
62 26 0.07
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (58 bp):
TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
Found at i:769018 original size:86 final size:87
Alignment explanation
Indices: 768874--769351 Score: 669
Period size: 86 Copynumber: 5.5 Consensus size: 87
768864 AATGTTCATC
* *
768874 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCTCACGAGTCAGTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
*
768939 AAGCCCACGAGTCAGTGGCAC-
66 AAGCCCACAAGTCAGTGGCACT
* * * *
768960 CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTTAAAACCCACAAATCAGTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
* *
769025 AAGCCCATAAGACAGTGGCAC-
66 AAGCCCACAAGTCAGTGGCACT
* * *
769046 CTTTTCAAAGCCCATAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
769111 AAGCCCACAAGTCAGTGGCACT
66 AAGCCCACAAGTCAGTGGCACT
* *
769133 CCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
* * * *
769197 AAGCCTATAATTTAGTGGCACT
66 AAGCCCACAAGTCAGTGGCACT
* *
769219 CTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
*
769283 AAGCCCTACACAAGTCGGTGGCAACT
66 AAG-CC--CACAAGTCAGTGGC-ACT
* * *
769309 CTTTTCAAACCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCAC
1 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCAC
769352 TGTAGACACC
Statistics
Matches: 349, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
85 27 0.08
86 213 0.61
87 55 0.16
89 9 0.03
90 45 0.13
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.24
Consensus pattern (87 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
AAGCCCACAAGTCAGTGGCACT
Found at i:769609 original size:21 final size:21
Alignment explanation
Indices: 769583--769659 Score: 118
Period size: 21 Copynumber: 3.7 Consensus size: 21
769573 TTTTTATCCA
* *
769583 AATGTACCGATACATTTATAG
1 AATGTATCGATACATTTGTAG
*
769604 AATGTATCGATGCATTTGTAG
1 AATGTATCGATACATTTGTAG
769625 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
769646 AATATATCGATACA
1 AATGTATCGATACA
769660 AGCTCCCAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:769800 original size:21 final size:21
Alignment explanation
Indices: 769774--769815 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
769764 AGCTACTGCC
769774 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
769795 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
769816 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:769820 original size:13 final size:13
Alignment explanation
Indices: 769802--769827 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
769792 ATTAAGGAAA
769802 TGTATCGATACAT
1 TGTATCGATACAT
769815 TGTATCGATACAT
1 TGTATCGATACAT
769828 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:773813 original size:17 final size:17
Alignment explanation
Indices: 773780--773813 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
773770 ATTCACGGAG
* *
773780 TAGAAAAAACGGTATTT
1 TAGAAAAAAAGGCATTT
773797 TAGAAAAAAAGGCATTT
1 TAGAAAAAAAGGCATTT
773814 CAAGGAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.18, T:0.26
Consensus pattern (17 bp):
TAGAAAAAAAGGCATTT
Found at i:774069 original size:166 final size:166
Alignment explanation
Indices: 773523--774365 Score: 796
Period size: 165 Copynumber: 5.1 Consensus size: 166
773513 TAAATTAAAA
* * ** * * * * ** *
773523 TTTTCAAAACTGAATTAATAGGAGTTCAATGACAATATTAGATGAATTTTAAAAATTTGAAATCA
1 TTTTGAAAACTGAATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCA
* * * * * * *
773588 AGAAAAATTCCTCC-AAAAAATTTATGTAGTAGAAAATT-CGTTTTTTCG-GAGAAAGGG-ATTC
66 AGAAAAA-TCCTCCAAAAAAATTCACGGAGTAGAAAATTCCGTATTTTAGAAAAAAAGGGAATTC
* * *
773649 CAAGGAAAAAATTCAAAATTCATGGAAATGAATGAAT
130 TAAGGAAAAAATTCAAAACTCATGAAAATGAATGAAT
773686 TTTTGAAAACTGAATTAATATGAAATAAATAATAATATTTGAT-AACTTTTAAAAATTAAAAACC
1 TTTTGAAAACTGAATTAATATGAAATAAATAATAATATTTGATGAA-TTTTAAAAATTAAAAACC
* ** ** * * *
773750 ATGAAAAATCC-CCTTGAAAAATTCACGGAGTAGAAAAAACGGTATTTTAGAAAAAAAGGCATTT
65 AAGAAAAATCCTCC-AAAAAAATTCACGGAGTAGAAAATTCCGTATTTTAGAAAAAAAGGGAATT
* *
773814 C-AAGGAAAAAATTCAAAATTCATGGAAATGAATGAAT
129 CTAAGGAAAAAATTCAAAACTCATGAAAATGAATGAAT
* * * *
773851 TTTTGAAAACTGAATTAATATGAAATAAATGATAATATTCGATGACTTTTAAAAATTAAAAATCA
1 TTTTGAAAACTGAATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCA
* * *
773916 AGAAACATCCTCCAAAAAAATTCACAGAGTAGACAATTCCGTATTTT-GAAAAAAAGGGAATTCT
66 AGAAAAATCCTCCAAAAAAATTCACGGAGTAGAAAATTCCGTATTTTAGAAAAAAAGGGAATTCT
* *
773980 AGGGAACTAAA-TCAAAAACTCATGAAAATGAATGAAT
131 AAGGAA-AAAATTC-AAAACTCATGAAAATGAATGAAT
* * * *
774017 TTTTGAAAACTAAATTGATATGAAATAAATAAAAATATTTGATAAATTTTAAAAATTAAAAACCA
1 TTTTGAAAACTGAATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCA
* * * * * *
774082 ATAAAAATTCTCTCAAAAAAATTCACGGAGTAGAAAACT-C-TATATTTCGAGAAAAATGAGAAT
66 AGAAAAATCCTC-CAAAAAAATTCACGGAGTAGAAAATTCCGTAT-TTTAGA-AAAAAAGGGAAT
* * * *
774145 TTTAAGGAAAAAATTCCAAAACTAATGAAAATAAAAGAAT
128 TCTAAGGAAAAAATT-CAAAACTCATGAAAATGAATGAAT
* * * ** *
774185 TTTTAAAAACTGATTTTATATGAAATAAATAGCAATATTTGATGAATTTTGAAAATTAAAAACCA
1 TTTTGAAAACTGAATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCA
* * * * * * * *
774250 AGAAAAATCTCTTCAAAAAAAATTTATGAAGGAGAAAACTCCTTA-TTT-CAAAAAAAGGGAACT
66 AGAAAAATC-C-TCCAAAAAAATTCACGGAGTAGAAAATTCCGTATTTTAGAAAAAAAGGGAA-T
* * * * *
774313 TC-AAGAAAAAAAATTTAAAAATTCATGAAAGTGAAAGAAT
128 TCTAAG-GAAAAAA-TTCAAAACTCATGAAAATGAATGAAT
*
774353 TTTTCAAAACTGA
1 TTTTGAAAACTGA
774366 TTTGATGGGG
Statistics
Matches: 564, Mismatches: 92, Indels: 43
0.81 0.13 0.06
Matches are distributed among these distances:
161 2 0.00
162 5 0.01
163 75 0.13
164 21 0.04
165 146 0.26
166 100 0.18
167 40 0.07
168 142 0.25
169 28 0.05
170 3 0.01
171 2 0.00
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (166 bp):
TTTTGAAAACTGAATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCA
AGAAAAATCCTCCAAAAAAATTCACGGAGTAGAAAATTCCGTATTTTAGAAAAAAAGGGAATTCT
AAGGAAAAAATTCAAAACTCATGAAAATGAATGAAT
Found at i:774404 original size:168 final size:168
Alignment explanation
Indices: 773649--774371 Score: 488
Period size: 168 Copynumber: 4.3 Consensus size: 168
773639 AAAGGGATTC
* * * * * * * * * *
773649 CAAGGAAAAAATTC-AAAATTCATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATA
1 CAAGAAAAAAATTCAAAAACTAATGAAAATAAAAGAATTTTTAAAAACTGATTTGATAGGAAATA
** * * * * * **
773713 AATAATAATATTTGATAACTTTTAAAAATTAAAAACCATGAAAAATCCCCT-TGAAAAATTCACG
66 AATAGCAATATTTGATAAATTTTGAAAATTAAAAACCAAGAAAAATTCTCTCAAAAAAATTCACG
* * ** * * *
773777 GAGTAGAAAAAACGGTAT-TTTAGA-AAAAAAG-GCATTT
131 AAG--GAGAAAACTCTATATTTCGAGAAAAAAGAGAACTT
* * * * * * * * * *
773814 CAAGGAAAAAATTC-AAAATTCATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATA
1 CAAGAAAAAAATTCAAAAACTAATGAAAATAAAAGAATTTTTAAAAACTGATTTGATAGGAAATA
* * * * * * * *
773878 AAT-GATAATATTCGATGACTTTTAAAAATTAAAAATCAAGAAACATCCTC-CAAAAAAATTCAC
66 AATAG-CAATATTTGATAAATTTTGAAAATTAAAAACCAAGAAAAATTCTCTCAAAAAAATTCAC
* * * ** * *
773941 -AGAGTAGACAATTCCGTATTTTGA-AAAAAAGGGAA-TT
130 GA-AGGAGAAAACTCTATATTTCGAGAAAAAAGAGAACTT
* ** * * * * * * *
773978 CTAGGGAACTAAA-TCAAAAACTCATGAAAATGAATGAATTTTTGAAAACTAAATTGATATGAAA
1 C-A-AGAAAAAAATTCAAAAACTAATGAAAATAAAAGAATTTTTAAAAACTGATTTGATAGGAAA
** * *
774042 TAAATAAAAATATTTGATAAATTTTAAAAATTAAAAACCAATAAAAATTCTCTCAAAAAAATTCA
64 TAAATAGCAATATTTGATAAATTTTGAAAATTAAAAACCAAGAAAAATTCTCTCAAAAAAATTCA
* * * *
774107 CGGAGTAGAAAACTCTATATTTCGAGAAAAATGAGAATTT
129 CGAAGGAGAAAACTCTATATTTCGAGAAAAAAGAGAACTT
* * * * *
774147 TAAGGAAAAAATTCCAAAACTAATGAAAATAAAAGAATTTTTAAAAACTGATTTTATATGAAATA
1 CAAGAAAAAAATTCAAAAACTAATGAAAATAAAAGAATTTTTAAAAACTGATTTGATAGGAAATA
* *
774212 AATAGCAATATTTGATGAATTTTGAAAATTAAAAACCAAGAAAAA-TCTCTTCAAAAAAAATTTA
66 AATAGCAATATTTGATAAATTTTGAAAATTAAAAACCAAGAAAAATTCTC-TC-AAAAAAATTCA
* *
774276 TGAAGGAGAAAACTCCT-TATTTC-A-AAAAAAGGGAACTT
129 CGAAGGAGAAAACT-CTATATTTCGAGAAAAAAGAGAACTT
* * * * * *
774314 CAAGAAAAAAAATTTAAAAATTCATGAAAGTGAAAGAATTTTTCAAAACTGATTTGAT
1 CAAG-AAAAAAATTCAAAAACTAATGAAAATAAAAGAATTTTTAAAAACTGATTTGAT
774372 GGGGATTAAT
Statistics
Matches: 460, Mismatches: 80, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
163 5 0.01
164 15 0.03
165 123 0.27
166 91 0.20
167 53 0.12
168 142 0.31
169 29 0.06
170 2 0.00
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (168 bp):
CAAGAAAAAAATTCAAAAACTAATGAAAATAAAAGAATTTTTAAAAACTGATTTGATAGGAAATA
AATAGCAATATTTGATAAATTTTGAAAATTAAAAACCAAGAAAAATTCTCTCAAAAAAATTCACG
AAGGAGAAAACTCTATATTTCGAGAAAAAAGAGAACTT
Found at i:778977 original size:97 final size:96
Alignment explanation
Indices: 778871--779092 Score: 283
Period size: 92 Copynumber: 2.3 Consensus size: 96
778861 AAGGTTGGAG
*
778871 TATCCCCTCAGAGAAGTGGGGTTGAAGTATCCCCAAAGATAATAACTTAGGCAAAAATAAGATTT
1 TATCCCCTCAGAGAAGTGGGGTTG-AGTATCCCCAAAGACAATAACTTAGGCAAAAATAAGATTT
*
778936 GAATCTTGACAAGTTTAAAAGTAGGGTTGAAA
65 GAATCTTGACAAGTTTAAAAGCAGGGTTGAAA
* * * *
778968 TATCCCCTCAAAGAAGTGGGG-T---TATCACCAATGACAATAACTTAGGCAAAATTAAGATTTG
1 TATCCCCTCAGAGAAGTGGGGTTGAGTATCCCCAAAGACAATAACTTAGGCAAAAATAAGATTTG
* * *
779029 AATCTTGACAAGTTTAAAAGCGGGGTTGGAG
66 AATCTTGACAAGTTTAAAAGCAGGGTTGAAA
* *
779060 TGTTCCCTCAGAAGAA-TGGGGTTGGAGTATCCC
1 TATCCCCTCAG-AGAAGTGGGGTT-GAGTATCCC
779093 GATGAATAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
92 75 0.71
93 5 0.05
96 1 0.01
97 25 0.24
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (96 bp):
TATCCCCTCAGAGAAGTGGGGTTGAGTATCCCCAAAGACAATAACTTAGGCAAAAATAAGATTTG
AATCTTGACAAGTTTAAAAGCAGGGTTGAAA
Found at i:781433 original size:20 final size:21
Alignment explanation
Indices: 781394--781446 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
781384 ATTTTAGGCA
*
781394 TATATCGATACATTCACTTA-
1 TATATCGATATATTCACTTAT
*
781414 TGTATCGATATATTGC-CTTAT
1 TATATCGATATATT-CACTTAT
781435 TATATCGATATA
1 TATATCGATATA
781447 AATTATTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.43
Consensus pattern (21 bp):
TATATCGATATATTCACTTAT
Found at i:782279 original size:21 final size:22
Alignment explanation
Indices: 782222--782280 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 22
782212 AAATGAGAAA
782222 AACAA-AAAAAAAAAAGAGTGC
1 AACAACAAAAAAAAAAGAGTGC
*
782243 AA-AGACAAAAGCAAAAAG-GTG-
1 AACA-ACAAAA-AAAAAAGAGTGC
782264 AACAACAAAAATAAAAA
1 AACAACAAAAA-AAAAA
782281 AACAAGGGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
20 1 0.03
21 16 0.52
22 8 0.26
23 6 0.19
ACGTcount: A:0.71, C:0.10, G:0.14, T:0.05
Consensus pattern (22 bp):
AACAACAAAAAAAAAAGAGTGC
Found at i:783919 original size:32 final size:33
Alignment explanation
Indices: 783878--783941 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
783868 TAGCCAAACT
**
783878 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
*
783910 TGTATCGATATACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
783942 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:787823 original size:20 final size:20
Alignment explanation
Indices: 787798--787835 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
787788 ATAAAAAGAT
787798 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
787818 AGAATGTATCGATACATT
1 AGAATGTATCGATACATT
787836 CATACATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:788931 original size:30 final size:29
Alignment explanation
Indices: 788690--789209 Score: 262
Period size: 30 Copynumber: 17.4 Consensus size: 29
788680 CTAGTGGAGT
* * * * *
788690 CCTTTTTTAAGTCAACGACTCAATAGCATC
1 CCTTTTTAAAGTCCACAACTCCATGGCA-C
*
788720 CCTTTTTTAAAGTCCACAACTCCATGGCAA
1 CC-TTTTTAAAGTCCACAACTCCATGGCAC
* *
788750 TC-TTTTAAAGTCCACAACTCTATGGCA-
1 CCTTTTTAAAGTCCACAACTCCATGGCAC
*
788777 CCTTTTTAAAAGTCCACAACTCCATGACAC
1 CCTTTTT-AAAGTCCACAACTCCATGGCAC
* * * ** *
788807 CTTTTTTTAAAAAAATTTCACAACTCGGTGGTAC
1 C-CTTTTT----AAAGTCCACAACTCCATGGCAC
* * **
788841 CATTTTTCAAAATCCACAACTTTATGGCAC
1 CCTTTTT-AAAGTCCACAACTCCATGGCAC
* * * *
788871 CCTTTTCAAAGTTCATAACTCCATGACAC
1 CCTTTTTAAAGTCCACAACTCCATGGCAC
* *
788900 CCTTTCTTAAAATCCACAACTCCGTGGCAC
1 CCTTT-TTAAAGTCCACAACTCCATGGCAC
* * * **
788930 CCTTTCTCAAAGTTCATAACTCTTTGGCAC
1 CCTTT-TTAAAGTCCACAACTCCATGGCAC
* * *
788960 ACTTTTCTCAAAGTCCAAAACT-C-TGTGTAC
1 CCTTTT-T-AAAGTCCACAACTCCATG-GCAC
* *
788990 CCTTTTTTTAAAAAGTTCACAACTCCATGGCAT
1 CC--TTTTT--AAAGTCCACAACTCCATGGCAC
** * * * *
789023 TTTTTTTCAAAGTTCACAACTCCGTGGTAG
1 CCTTTTT-AAAGTCCACAACTCCATGGCAC
* * * *
789053 CCTTTTCTAAAGTCTACAACTTCGTGGTAC
1 CCTTTT-TAAAGTCCACAACTCCATGGCAC
* *
789083 CC-TTTCAAAGTCCACAACTCTATGGCA-
1 CCTTTTTAAAGTCCACAACTCCATGGCAC
* * *
789110 CCTTTTTCAAAGCCCACAACTCCGTGGCAT
1 CCTTTTT-AAAGTCCACAACTCCATGGCAC
* ** *
789140 CC-TTTTAAAGTTCACAACTTTATGACAC
1 CCTTTTTAAAGTCCACAACTCCATGGCAC
* * **
789168 CTTTTTCTAAAGACCACAACTCTGTGGCATC
1 CCTTTT-TAAAGTCCACAACTCCATGGCA-C
789199 CCTTTTTAAAG
1 CCTTTTTAAAG
789210 CCCATACAAG
Statistics
Matches: 372, Mismatches: 94, Indels: 48
0.72 0.18 0.09
Matches are distributed among these distances:
27 3 0.01
28 63 0.17
29 71 0.19
30 142 0.38
31 50 0.13
32 15 0.04
33 8 0.02
34 20 0.05
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (29 bp):
CCTTTTTAAAGTCCACAACTCCATGGCAC
Found at i:789144 original size:57 final size:58
Alignment explanation
Indices: 789027--789199 Score: 197
Period size: 57 Copynumber: 3.0 Consensus size: 58
789017 TGGCATTTTT
** * * * * * *
789027 TTTCAAAGTTCACAACTCCGTGGTAGCC-TTTTCTAAAGTCTACAACTTCGTGGTACCC
1 TTTCAAAGTTCACAACTCTATGGCA-CCTTTTTCTAAAGACCACAACTCCGTGGCATCC
* *
789085 TTTCAAAGTCCACAACTCTATGGCACCTTTTTC-AAAGCCCACAACTCCGTGGCATCC
1 TTTCAAAGTTCACAACTCTATGGCACCTTTTTCTAAAGACCACAACTCCGTGGCATCC
* * * *
789142 TTTTAAAGTTCACAACTTTATGACACCTTTTTCTAAAGACCACAACTCTGTGGCATCC
1 TTTCAAAGTTCACAACTCTATGGCACCTTTTTCTAAAGACCACAACTCCGTGGCATCC
789200 CTTTTTAAAG
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
57 50 0.51
58 48 0.49
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (58 bp):
TTTCAAAGTTCACAACTCTATGGCACCTTTTTCTAAAGACCACAACTCCGTGGCATCC
Found at i:789240 original size:31 final size:31
Alignment explanation
Indices: 789191--789404 Score: 204
Period size: 31 Copynumber: 6.9 Consensus size: 31
789181 CCACAACTCT
* * *
789191 GTGGCATCCCTTTTTAAAGCCCATACAAGTCG
1 GTGGCAACCC-TTTTAAAGCCCACACAAGTTG
* * *
789223 GTGGCAACCCTTTTAAAGCCCATATAAGTAG
1 GTGGCAACCCTTTTAAAGCCCACACAAGTTG
*
789254 GTGGCAA-CC--TTAAAGCCCACACAAGTTA
1 GTGGCAACCCTTTTAAAGCCCACACAAGTTG
* *
789282 GTGGC-TCCCTTTTTAAAGCCTACACAAGTTG
1 GTGGCAACCC-TTTTAAAGCCCACACAAGTTG
* * * * *
789313 GTGGCAATCCTTCTCAA-CCTACACAAATTG
1 GTGGCAACCCTTTTAAAGCCCACACAAGTTG
*
789343 GTGGCAACCCTTTGCAAAGCCCACACAAGTTG
1 GTGGCAACCCTTT-TAAAGCCCACACAAGTTG
**
789375 GTGGCAACCCTCTCAAAAGCCCACACAAGT
1 GTGGCAACCCT-TTTAAAGCCCACACAAGT
789405 CGTTGGCATT
Statistics
Matches: 151, Mismatches: 23, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
28 22 0.15
30 25 0.17
31 55 0.36
32 48 0.32
33 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (31 bp):
GTGGCAACCCTTTTAAAGCCCACACAAGTTG
Found at i:789269 original size:59 final size:61
Alignment explanation
Indices: 789205--789412 Score: 208
Period size: 59 Copynumber: 3.4 Consensus size: 61
789195 CATCCCTTTT
* * * *
789205 TAAAGCCCATACAAGTCGGTGGCAACCCTTTTAAAGCCCATATAAGTAGGTGGCAA-CCT-
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTTTAAAGCCCACACAAGTTGGTGGCAACCCTC
** * * *
789264 TAAAGCCCACACAAGTTAGTGGC-TCCCTTTTTAAAGCCTACACAAGTTGGTGGCAATCCTTC
1 TAAAGCCCACACAAGTCGGTGGCAACCC-TTTTAAAGCCCACACAAGTTGGTGGCAA-CCCTC
* * * * *
789326 TCAA-CCTACACAAATTGGTGGCAACCCTTTGCAAAGCCCACACAAGTTGGTGGCAACCCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTT-TAAAGCCCACACAAGTTGGTGGCAACCCTC
*
789387 TCAAAAGCCCACACAAGTCGTTGGCA
1 T--AAAGCCCACACAAGTCGGTGGCA
789413 TTTTCTTCTA
Statistics
Matches: 118, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
58 3 0.03
59 44 0.37
61 25 0.21
62 29 0.25
63 2 0.02
64 15 0.13
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (61 bp):
TAAAGCCCACACAAGTCGGTGGCAACCCTTTTAAAGCCCACACAAGTTGGTGGCAACCCTC
Found at i:789684 original size:52 final size:50
Alignment explanation
Indices: 789502--789694 Score: 156
Period size: 52 Copynumber: 3.7 Consensus size: 50
789492 CGCTGGCTCA
* * *
789502 GAACTAGCACATTGGCAACCT-TCATCTTTAAGTCTAATATCGTTAGCCTT
1 GAACCAGCACATTGGCACCCTATCATCTTTAAGTCTAATATCG-TGGCCTT
** * * * * **
789552 GAATTAGCATATTGGGACCTTTTATTATCTTTAAGT-TCAACGTCGTCGGCCTT
1 GAACCAGCACATTGGCACC--CTATCATCTTTAAGTCT-AATATCGT-GGCCTT
* ** *
789605 GAATCAGCACATTGGCATTCTAGTCATCTTTAAGTCTAATATTGCTGGCCTT
1 GAACCAGCACATTGGCACCCTA-TCATCTTTAAGTCTAATATCG-TGGCCTT
*
789657 GAACCAGCACATTGGCACCCTTATCATCTCTAAGTCTA
1 GAACCAGCACATTGGCACCC-TATCATCTTTAAGTCTA
789695 GTGTCATTGG
Statistics
Matches: 111, Mismatches: 23, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
50 15 0.14
51 2 0.02
52 55 0.50
53 39 0.35
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
GAACCAGCACATTGGCACCCTATCATCTTTAAGTCTAATATCGTGGCCTT
Found at i:789706 original size:52 final size:52
Alignment explanation
Indices: 789599--789711 Score: 129
Period size: 52 Copynumber: 2.2 Consensus size: 52
789589 CAACGTCGTC
* ** * **
789599 GGCCTTGAATCAGCACATTGGCATTCTAGTCATCTTTAAGTCTAATATTGCT
1 GGCCTTGAACCAGCACATTGGCACCCTAGTCATCTCTAAGTCTAATATCACT
* * *
789651 GGCCTTGAACCAGCACATTGGCACCCTTA-TCATCTCTAAGTCTAGTGTCATT
1 GGCCTTGAACCAGCACATTGGCACCC-TAGTCATCTCTAAGTCTAATATCACT
789703 GGCCTTGAA
1 GGCCTTGAA
789712 TCTATACATT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
52 49 0.96
53 2 0.04
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (52 bp):
GGCCTTGAACCAGCACATTGGCACCCTAGTCATCTCTAAGTCTAATATCACT
Found at i:792370 original size:97 final size:96
Alignment explanation
Indices: 792236--792427 Score: 262
Period size: 97 Copynumber: 2.0 Consensus size: 96
792226 TATTCTTCTA
*
792236 AGGGGATACTCCAACCCCGCTTTTAAACTTCTCAAGATTTAAATCTTATTTTTG-CTCAAATTAT
1 AGGGGATACTCCAACCCCGCTTTTAAACTTCTCAAGATTTAAATCTTATTTTCGCCT-AAATTAT
*
792300 CATCATCGTAGATACTCCAACCCCATTCTTTCG
65 CATCATCGGAGATACTCCAACCCCA-TCTTTCG
* * * *
792333 AGGGGATAGTCCAACCTCGCTTTTAAAC-TCGTTAAGATTTAAATCTTATTTTCGCCTAAATTGT
1 AGGGGATACTCCAACCCCGCTTTTAAACTTC-TCAAGATTTAAATCTTATTTTCGCCTAAATTAT
* * *
792397 CATCATTGGGGATACTCCAACCGCATCTTTC
65 CATCATCGGAGATACTCCAACCCCATCTTTC
792428 AATCATAAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
96 8 0.10
97 74 0.88
98 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (96 bp):
AGGGGATACTCCAACCCCGCTTTTAAACTTCTCAAGATTTAAATCTTATTTTCGCCTAAATTATC
ATCATCGGAGATACTCCAACCCCATCTTTCG
Found at i:795897 original size:121 final size:122
Alignment explanation
Indices: 795646--795955 Score: 376
Period size: 121 Copynumber: 2.6 Consensus size: 122
795636 ATTAATAATA
* * * *
795646 AAAATGGATAATATAGTTTGATTTTGAATCTCAAAATTTAATTAATTAAATAAATAAGTATAATT
1 AAAATGGATAATGTAGTTTGATTTTGAATCTTAAAATTTAATTATTTAAATAGATAAGTATAA-T
* * * **
795711 TTTTAGTTTATGAAGGATTCTACTGAGATAAGGCTTAATTATTTAATTATTGGATAAC
65 TATTAGTTTAGGAAGGATTCTACTGAGATAAGGCTTAATTATTTAATCACCGGATAAC
* *
795769 -AAA-GGATAATGTAGTTTGATTTTGAATCTTGAAATTTGATTATTTAAATAGATAA-TATAATT
1 AAAATGGATAATGTAGTTTGATTTTGAATCTTAAAATTTAATTATTTAAATAGATAAGTATAATT
* * * *
795831 ATTATTTTAGGAAGGATTCTAGTGAGAT-ATGCTTAATTATTTAATCACCGGATAGC
66 ATTAGTTTAGGAAGGATTCTACTGAGATAAGGCTTAATTATTTAATCACCGGATAAC
*** * * * *
795887 AAAATTGGATAATGTAGTCAAATTATAAATCTTAAAATTTAATTATTTAAATAGATAATTTTAAT
1 AAAA-TGGATAATGTAGTTTGATTTTGAATCTTAAAATTTAATTATTTAAATAGATAAGTATAAT
795952 TATT
65 TATT
795956 TAAGTATTAG
Statistics
Matches: 160, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
118 23 0.14
119 29 0.18
120 5 0.03
121 91 0.57
122 12 0.08
ACGTcount: A:0.40, C:0.05, G:0.13, T:0.42
Consensus pattern (122 bp):
AAAATGGATAATGTAGTTTGATTTTGAATCTTAAAATTTAATTATTTAAATAGATAAGTATAATT
ATTAGTTTAGGAAGGATTCTACTGAGATAAGGCTTAATTATTTAATCACCGGATAAC
Found at i:797229 original size:16 final size:17
Alignment explanation
Indices: 797198--797232 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
797188 AAAATATGAT
797198 TTTTAAAATTATAATAAA
1 TTTTAAAA-TATAATAAA
797216 TTTTAAAA-ATAATAAA
1 TTTTAAAATATAATAAA
797232 T
1 T
797233 ATATTCATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
18 8 0.47
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TTTTAAAATATAATAAA
Found at i:797268 original size:19 final size:19
Alignment explanation
Indices: 797232--797268 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
797222 AAATAATAAA
* *
797232 TATATTCATATTGAATATG
1 TATATTAATATTCAATATG
797251 TATATTAATATTCAATAT
1 TATATTAATATTCAATAT
797269 TCACTTAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
TATATTAATATTCAATATG
Found at i:798732 original size:36 final size:37
Alignment explanation
Indices: 798680--798759 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 37
798670 TATAAAACAC
* * * *
798680 TTAAATTGGTTTAATATCCTATAATGATCACATTTA-
1 TTAAATTGATTCAATATACTATAATGATCACATTGAT
* *
798716 TTAAATTGATTCAATATATTATGATGATCACATTGAT
1 TTAAATTGATTCAATATACTATAATGATCACATTGAT
798753 TTAAATT
1 TTAAATT
798760 ATAGTTACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 30 0.81
37 7 0.19
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (37 bp):
TTAAATTGATTCAATATACTATAATGATCACATTGAT
Found at i:800293 original size:22 final size:22
Alignment explanation
Indices: 800268--800320 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
800258 TTAAATAATA
800268 TTATGATATTAAAATTATTATT
1 TTATGATATTAAAATTATTATT
* * **
800290 TTATAATTTTAATTTTATTATT
1 TTATGATATTAAAATTATTATT
*
800312 AT-TGATATT
1 TTATGATATT
800321 TATGATTAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATGATATTAAAATTATTATT
Found at i:802006 original size:12 final size:12
Alignment explanation
Indices: 801989--802026 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
801979 ATGGCCGGTG
801989 TATGTATGTATA
1 TATGTATGTATA
802001 TATGTATGT-TCA
1 TATGTATGTAT-A
802013 TATGTATGTATA
1 TATGTATGTATA
802025 TA
1 TA
802027 ACAAAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.32, C:0.03, G:0.16, T:0.50
Consensus pattern (12 bp):
TATGTATGTATA
Found at i:802908 original size:13 final size:13
Alignment explanation
Indices: 802890--802915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
802880 CAATTTTTTG
802890 TGTATCGATACAT
1 TGTATCGATACAT
802903 TGTATCGATACAT
1 TGTATCGATACAT
802916 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:802927 original size:32 final size:33
Alignment explanation
Indices: 802870--802933 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
802860 TACAAGCCAA
**
802870 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
802903 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
802934 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:805300 original size:13 final size:13
Alignment explanation
Indices: 805284--805319 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
805274 AATCCCCCTA
805284 TATCGATACAGTG
1 TATCGATACAGTG
* *
805297 TATCAATACATTG
1 TATCGATACAGTG
805310 TATCGATACA
1 TATCGATACA
805320 AAGAAAAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (13 bp):
TATCGATACAGTG
Found at i:806761 original size:13 final size:13
Alignment explanation
Indices: 806743--806767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
806733 CAAGGATCTT
806743 TGTATCGATACAC
1 TGTATCGATACAC
806756 TGTATCGATACA
1 TGTATCGATACA
806768 AGGGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:809412 original size:32 final size:33
Alignment explanation
Indices: 809351--809414 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
809341 AAGCCCAGAA
*
809351 ATATCGATACATATTGCTTTGTATCGATACACT
1 ATATCGATACATATTGCTTGGTATCGATACACT
809384 ATATCGATACATGA-T-CTTGGTATCGATACAC
1 ATATCGATACAT-ATTGCTTGGTATCGATACAC
809415 AATGAATTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.52
33 13 0.45
34 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (33 bp):
ATATCGATACATATTGCTTGGTATCGATACACT
Found at i:810510 original size:401 final size:401
Alignment explanation
Indices: 809886--810660 Score: 1514
Period size: 401 Copynumber: 1.9 Consensus size: 401
809876 GTAAAATTTC
809886 CTTGAGTTGTATAAGGTTGCATTCAGCCTTGGATTACAATCTCTTAAAAATTTGAGATATAATTC
1 CTTGAGTTGTATAAGGTTGCATTCAGCCTTGGATTACAATCTCTTAAAAATTTGAGATATAATTC
809951 TTAAAGAGATTGAAAGGTTCTTATCTTAGCCTTGAAAAGATAAGTGTTGTAAGGTTATACCTTTT
66 TTAAAGAGATTGAAAGGTTCTTATCTTAGCCTTGAAAAGATAAGTGTTGTAAGGTTATACCTTTT
*
810016 CCTGAAAGGTAAACAATTCGTGTAGTGGATTGTGGTAACACTCGACAAGGAAATGTCGAGGAGAA
131 CCTGAAAGGTAAACAATTCATGTAGTGGATTGTGGTAACACTCGACAAGGAAATGTCGAGGAGAA
*
810081 ATGACGTAGGTGTCGTGTTTGGACTGAACCTCTATAAATATTTGTGTCGAGCTATCTCTTTTCCC
196 ATGACGTAGGTGTCGTGTTTGGACTGAACCTCTATAAATATTTGTGTCGAGCAATCTCTTTTCCC
810146 TACCCTCTTTATCTTCAAGTTGTTTTCAAAAGAATTCTTTCAAAATATTCAAATTTCAAAAAGAA
261 TACCCTCTTTATCTTCAAGTTGTTTTCAAAAGAATTCTTTCAAAATATTCAAATTTCAAAAAGAA
810211 CCAATTCACCCCCATCTTGGTTCATCAAATCTTAGAGCTTACAAAAGACACTAAGATCATCTTAG
326 CCAATTCACCCCCATCTTGGTTCATCAAATCTTAGAGCTTACAAAAGACACTAAGATCATCTTAG
810276 AGCTTACAAAT
391 AGCTTACAAAT
*
810287 CTTGAGTTGTATAAGGTTGCATTCAGCCTTGGATTACAATCTCTTAAGAATTTGAGATATAATTC
1 CTTGAGTTGTATAAGGTTGCATTCAGCCTTGGATTACAATCTCTTAAAAATTTGAGATATAATTC
810352 TTAAAGAGATTGAAAGGTTCTTATCTTAGCCTTGAAAAGATAAGTGTTGTAAGGTTATACCTTTT
66 TTAAAGAGATTGAAAGGTTCTTATCTTAGCCTTGAAAAGATAAGTGTTGTAAGGTTATACCTTTT
810417 CCTGAAAGGTAAACAATTCATGTAGTGGATTGTGGTAACACTCGACAAGGAAATGTCGAGGAGAA
131 CCTGAAAGGTAAACAATTCATGTAGTGGATTGTGGTAACACTCGACAAGGAAATGTCGAGGAGAA
810482 ATGACGTAGGTGTCGTGTTTGGACTGAACCTCTATAAATATTTGTGTCGAGCAATCTCTTTTCCC
196 ATGACGTAGGTGTCGTGTTTGGACTGAACCTCTATAAATATTTGTGTCGAGCAATCTCTTTTCCC
*
810547 TACCCTCTTTATCTTCAAGTTGTTTTCAAAAGAATTCTTTCAAAATATTCAAATTTCGAAAAGAA
261 TACCCTCTTTATCTTCAAGTTGTTTTCAAAAGAATTCTTTCAAAATATTCAAATTTCAAAAAGAA
810612 CCAATTCACCCCCATCTTGGTTCATCAAATCTTAGAGCTTACAAAAGAC
326 CCAATTCACCCCCATCTTGGTTCATCAAATCTTAGAGCTTACAAAAGAC
810661 CAAAAGATCA
Statistics
Matches: 370, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
401 370 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (401 bp):
CTTGAGTTGTATAAGGTTGCATTCAGCCTTGGATTACAATCTCTTAAAAATTTGAGATATAATTC
TTAAAGAGATTGAAAGGTTCTTATCTTAGCCTTGAAAAGATAAGTGTTGTAAGGTTATACCTTTT
CCTGAAAGGTAAACAATTCATGTAGTGGATTGTGGTAACACTCGACAAGGAAATGTCGAGGAGAA
ATGACGTAGGTGTCGTGTTTGGACTGAACCTCTATAAATATTTGTGTCGAGCAATCTCTTTTCCC
TACCCTCTTTATCTTCAAGTTGTTTTCAAAAGAATTCTTTCAAAATATTCAAATTTCAAAAAGAA
CCAATTCACCCCCATCTTGGTTCATCAAATCTTAGAGCTTACAAAAGACACTAAGATCATCTTAG
AGCTTACAAAT
Found at i:810848 original size:18 final size:17
Alignment explanation
Indices: 810806--810849 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
810796 TTATGCATGT
*
810806 ATGAAGCATGAAAAGTGC
1 ATGAA-CATGAAAAATGC
810824 ATGGAACATGAAAAAATGC
1 AT-GAACATG-AAAAATGC
810843 ATGAACA
1 ATGAACA
810850 AAGGCTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.50, C:0.11, G:0.23, T:0.16
Consensus pattern (17 bp):
ATGAACATGAAAAATGC
Found at i:811954 original size:21 final size:20
Alignment explanation
Indices: 811907--811960 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
811897 CATTTGAGAC
* *
811907 ATGTATCAATACATTCCCTT
1 ATGTATCAATACATTCACTA
*
811927 ATGTATCGATACATTCACTA
1 ATGTATCAATACATTCACTA
811947 ATTGTATCAATACA
1 A-TGTATCAATACA
811961 AATCGTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.37
Consensus pattern (20 bp):
ATGTATCAATACATTCACTA
Found at i:814643 original size:25 final size:26
Alignment explanation
Indices: 814580--814647 Score: 70
Period size: 25 Copynumber: 2.6 Consensus size: 26
814570 GATATTTGTG
814580 TCTTTTTACTTAAAAAATAATTAATTA
1 TCTTTTTA-TTAAAAAATAATTAATTA
* *
814607 TCTATTTT-TTAAAAACTATATTCA-T-
1 TCT-TTTTATTAAAAAATA-ATTAATTA
814632 TCTTTTTATTAAAAAA
1 TCTTTTTATTAAAAAA
814648 ATTACATTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
24 4 0.11
25 10 0.29
26 10 0.29
27 7 0.20
28 4 0.11
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (26 bp):
TCTTTTTATTAAAAAATAATTAATTA
Found at i:815263 original size:32 final size:32
Alignment explanation
Indices: 815204--815264 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
815194 TCATTTTCGA
* *
815204 GTTCGGATTGTTTTGGGTTCGGATCATTTCAT
1 GTTCGGATTGTTTTGAGTTCAGATCATTTCAT
*
815236 GTTCGTATTGTTTTGAGTTCA-AGTCATTT
1 GTTCGGATTGTTTTGAGTTCAGA-TCATTT
815265 TGGATTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.04
32 24 0.96
ACGTcount: A:0.15, C:0.11, G:0.25, T:0.49
Consensus pattern (32 bp):
GTTCGGATTGTTTTGAGTTCAGATCATTTCAT
Found at i:815854 original size:24 final size:23
Alignment explanation
Indices: 815827--815878 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
815817 TTTCTTTTAC
* *
815827 AATAACAATTTAAAAATTTAAACT
1 AATAAAAAATTAAAAATTTAAA-T
815851 AATAAAAAATTAAAAATTTAAAT
1 AATAAAAAATTAAAAATTTAAAT
815874 AATAA
1 AATAA
815879 GCACTTATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (23 bp):
AATAAAAAATTAAAAATTTAAAT
Found at i:816547 original size:20 final size:21
Alignment explanation
Indices: 816511--816549 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
816501 TGTATTATTT
*
816511 TTTTAAATATAATAATAATTA
1 TTTTAAATATAAAAATAATTA
816532 TTTTAAA-ATAAAAATAAT
1 TTTTAAATATAAAAATAAT
816550 CATATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTTAAATATAAAAATAATTA
Found at i:817495 original size:20 final size:19
Alignment explanation
Indices: 817451--817498 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
817441 ATTTTAGTGT
* *
817451 GTATCGATACAATGAACAT
1 GTATCGATACAAAGAACAA
*
817470 GTATCGATACAAAGCAATAA
1 GTATCGATACAAAG-AACAA
817490 GTATCGATA
1 GTATCGATA
817499 TATCTGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.25
Consensus pattern (19 bp):
GTATCGATACAAAGAACAA
Found at i:824046 original size:21 final size:21
Alignment explanation
Indices: 824020--824066 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
824010 ATGCAAGTTC
824020 TTATTCTT-TCTAGTCAATTCA
1 TTATTCTTGT-TAGTCAATTCA
* *
824041 TTATTCTTGTTAGTTAATTCT
1 TTATTCTTGTTAGTCAATTCA
824062 TTATT
1 TTATT
824067 AACACCTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.21, C:0.13, G:0.06, T:0.60
Consensus pattern (21 bp):
TTATTCTTGTTAGTCAATTCA
Found at i:824640 original size:3 final size:3
Alignment explanation
Indices: 824632--824666 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
824622 TGAGTCAACT
824632 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
824667 TTTGATGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:829946 original size:84 final size:87
Alignment explanation
Indices: 829791--829951 Score: 231
Period size: 91 Copynumber: 1.9 Consensus size: 87
829781 GCTCCCCCCT
* *
829791 TCCATGCTGTCCACTGCTGTACATTTCTTCTTGCTTTGCACGTTGCTTGTTGCATGTTTTGTCTC
1 TCCATGCTGTCCACTGCTGCACATTTCTTCTTGCTTTGCACGTTAC-T-TTG-ATGTTTTGTCTC
*
829856 CTATTGCATTTTTTTAATCATCCTC
63 CCATTGCATTTTTTTAATCATCCTC
829881 TCCATGCTGTCCACGTGCTGCACATTTCTTCTTGCTTTGCACGTTAC-TTG-T-TTTT-TCTCCC
1 TCCATGCTGTCCAC-TGCTGCACATTTCTTCTTGCTTTGCACGTTACTTTGATGTTTTGTCTCCC
829942 ATTGCATTTT
65 ATTGCATTTT
829952 GTTTGCTGCA
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
84 15 0.22
85 4 0.06
86 1 0.01
88 3 0.04
90 14 0.21
91 30 0.45
ACGTcount: A:0.12, C:0.27, G:0.14, T:0.47
Consensus pattern (87 bp):
TCCATGCTGTCCACTGCTGCACATTTCTTCTTGCTTTGCACGTTACTTTGATGTTTTGTCTCCCA
TTGCATTTTTTTAATCATCCTC
Found at i:830182 original size:11 final size:11
Alignment explanation
Indices: 830152--830210 Score: 54
Period size: 10 Copynumber: 5.6 Consensus size: 11
830142 GTCATTTCAC
830152 ATTTTTTTACTT
1 ATTTTTTTA-TT
*
830164 ATTATTTTATT
1 ATTTTTTTATT
*
830175 A-TTTTTT-TG
1 ATTTTTTTATT
830184 ATTTTTTTA-T
1 ATTTTTTTATT
*
830194 AATTTTTTA-T
1 ATTTTTTTATT
830204 ATTTTTT
1 ATTTTTT
830211 ATCTTTTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 26 0.67
11 3 0.08
12 8 0.21
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (11 bp):
ATTTTTTTATT
Found at i:830191 original size:20 final size:20
Alignment explanation
Indices: 830163--830210 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
830153 TTTTTTTACT
* *
830163 TATTATTTTATTATTTTTT-
1 TATTTTTTTATAATTTTTTA
830182 TGATTTTTTTATAATTTTTTA
1 T-ATTTTTTTATAATTTTTTA
830203 TATTTTTT
1 TATTTTTT
830211 ATCTTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
TATTTTTTTATAATTTTTTA
Found at i:830193 original size:17 final size:16
Alignment explanation
Indices: 830152--830233 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 16
830142 GTCATTTCAC
* *
830152 ATTTTTTTA-CTTATT
1 ATTTTTTTATTTTTTT
*
830167 ATTTTATTATTTTTTT
1 ATTTTTTTATTTTTTT
830183 GATTTTTTTATAATTTTTT
1 -ATTTTTTTAT--TTTTTT
*
830202 ATATTTTTTATCTTTTTA
1 AT-TTTTTTAT-TTTTTT
830220 ATTTTTTTGATTTT
1 ATTTTTTT-ATTTT
830234 ATATCGAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
15 8 0.15
16 4 0.07
17 18 0.33
18 11 0.20
19 14 0.25
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (16 bp):
ATTTTTTTATTTTTTT
Found at i:830233 original size:8 final size:8
Alignment explanation
Indices: 830152--830233 Score: 67
Period size: 9 Copynumber: 9.6 Consensus size: 8
830142 GTCATTTCAC
830152 ATTTTTTT
1 ATTTTTTT
* *
830160 A-CTTATT
1 ATTTTTTT
*
830167 ATTTTATT
1 ATTTTTTT
830175 ATTTTTTT
1 ATTTTTTT
830183 GATTTTTTT
1 -ATTTTTTT
830192 ATAATTTTTT
1 AT--TTTTTT
830202 ATATTTTTT
1 AT-TTTTTT
*
830211 ATCTTTTTA
1 AT-TTTTTT
830220 ATTTTTTT
1 ATTTTTTT
830228 GATTTT
1 -ATTTT
830234 ATATCGAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
7 5 0.08
8 20 0.32
9 29 0.47
10 8 0.13
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (8 bp):
ATTTTTTT
Found at i:830238 original size:25 final size:26
Alignment explanation
Indices: 830188--830238 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
830178 TTTTTGATTT
*
830188 TTTTATAATTTTTTATATTTTTTATC
1 TTTTATAATTTTTTATATTTTATATC
830214 TTTT-TAATTTTTT-TGATTTTATATC
1 TTTTATAATTTTTTAT-ATTTTATATC
830239 GAATAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 18 0.78
26 4 0.17
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (26 bp):
TTTTATAATTTTTTATATTTTATATC
Found at i:830877 original size:23 final size:23
Alignment explanation
Indices: 830851--830896 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
830841 TTTTACCAAT
830851 ATTTTTAATCTCATCGAAACTTA
1 ATTTTTAATCTCATCGAAACTTA
830874 ATTTTTAATCTCATCGAAACTTA
1 ATTTTTAATCTCATCGAAACTTA
830897 TCTCACCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTTTTAATCTCATCGAAACTTA
Found at i:831145 original size:17 final size:17
Alignment explanation
Indices: 831125--831182 Score: 64
Period size: 17 Copynumber: 3.3 Consensus size: 17
831115 ATTCATTATA
831125 TTATTAAAATATTATTT
1 TTATTAAAATATTATTT
*
831142 TTA-TATTAATATTTATATT
1 TTATTA-AAATA-TTAT-TT
*
831161 TTATAAAAATATTATTT
1 TTATTAAAATATTATTT
831178 TTATT
1 TTATT
831183 TTTGTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 2 0.06
17 13 0.39
18 8 0.24
19 9 0.27
20 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTAAAATATTATTT
Found at i:831150 original size:19 final size:19
Alignment explanation
Indices: 831126--831181 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
831116 TTCATTATAT
831126 TATTAAAATATTATTTTTA
1 TATTAAAATATTATTTTTA
*
831145 TATTAATAT-TTATATTTTA
1 TATTAAAATATTAT-TTTTA
831164 TA--AAAATATTATTTTTA
1 TATTAAAATATTATTTTTA
831181 T
1 T
831182 TTTTGTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 10 0.30
18 8 0.24
19 15 0.45
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTAAAATATTATTTTTA
Found at i:833895 original size:13 final size:13
Alignment explanation
Indices: 833877--833902 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
833867 CATTTTGGGA
833877 TGTATCGATACAT
1 TGTATCGATACAT
833890 TGTATCGATACAT
1 TGTATCGATACAT
833903 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:833899 original size:33 final size:32
Alignment explanation
Indices: 833857--833920 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
833847 TACAAGCCAA
*
833857 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
833890 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
833921 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:834008 original size:20 final size:21
Alignment explanation
Indices: 833961--834013 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
833951 GCCAATGACC
*
833961 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
833982 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
834002 TGTATCGATACA
1 TGTATCGATACA
834014 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:834019 original size:13 final size:13
Alignment explanation
Indices: 834001--834025 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
833991 ACATTTGGTC
834001 ATGTATCGATACA
1 ATGTATCGATACA
834014 ATGTATCGATAC
1 ATGTATCGATAC
834026 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:836014 original size:21 final size:21
Alignment explanation
Indices: 835983--836027 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
835973 GGCTGCTGTG
* *
835983 TGGGGGTTGCCCGGTTGCGACT
1 TGGGGGTTG-CCGATCGCGACT
836005 TGGGGG-TGCCGATCGCGACT
1 TGGGGGTTGCCGATCGCGACT
836025 TGG
1 TGG
836028 TGAGTACTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.07, C:0.22, G:0.47, T:0.24
Consensus pattern (21 bp):
TGGGGGTTGCCGATCGCGACT
Found at i:836334 original size:22 final size:19
Alignment explanation
Indices: 836296--836336 Score: 55
Period size: 22 Copynumber: 2.0 Consensus size: 19
836286 CTGTTTTTGT
836296 TGATGATTTTAATGAAAAA
1 TGATGATTTTAATGAAAAA
836315 TGATGTATTTTGAAGTGAAAAA
1 TGATG-ATTTT-AA-TGAAAAA
836337 CAAGAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 5 0.26
21 2 0.11
22 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.37
Consensus pattern (19 bp):
TGATGATTTTAATGAAAAA
Found at i:843125 original size:15 final size:15
Alignment explanation
Indices: 843105--843135 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
843095 TAAAAATGTC
*
843105 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
843120 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
843135 C
1 C
843136 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:845234 original size:13 final size:13
Alignment explanation
Indices: 845216--845254 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
845206 ACATTTTTCT
*
845216 TTGTATCAATACA
1 TTGTATCGATACA
845229 TTGTATCGATACA
1 TTGTATCGATACA
845242 TTGTATCGATACA
1 TTGTATCGATACA
845255 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:846592 original size:23 final size:23
Alignment explanation
Indices: 846549--846593 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
846539 TAATTATCTA
* *
846549 TTTTTAAAAAACTATATCATTCT
1 TTTTTAAAAAAATATACCATTCT
846572 TTTTATAAAAAAAT-TACCATTC
1 TTTT-TAAAAAAATATACCATTC
846594 CATATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (23 bp):
TTTTTAAAAAAATATACCATTCT
Found at i:848485 original size:20 final size:20
Alignment explanation
Indices: 848448--848512 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
848438 GTGTATTATT
*
848448 TTTTAAAATATAATAATAATTA
1 TTTTAAAATA-AA-AATAATAA
*
848470 TTTTAAAATAAAAATAATCA
1 TTTTAAAATAAAAATAATAA
*
848490 TTAT-AAATAAAACATAATAA
1 TTTTAAAATAAAA-ATAATAA
848510 TTT
1 TTT
848513 ATTAATACAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
19 8 0.21
20 18 0.47
21 2 0.05
22 10 0.26
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTTAAAATAAAAATAATAA
Found at i:848485 original size:23 final size:22
Alignment explanation
Indices: 848448--848493 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
848438 GTGTATTATT
*
848448 TTTTAAAATATAATAATAATTA
1 TTTTAAAATAAAATAATAATTA
*
848470 TTTTAAAATAAAAATAATCATTA
1 TTTTAAAAT-AAAATAATAATTA
848493 T
1 T
848494 AAATAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTTAAAATAAAATAATAATTA
Found at i:849072 original size:34 final size:35
Alignment explanation
Indices: 849014--849081 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 35
849004 TTGTTTGTGA
*
849014 AAAGAATACGCACAAAAGACTACAAAGAGC-CTTTC
1 AAAGAATACGCACAAAAGAATACAAA-AGCTCTTTC
849049 AAAGAATA-GC-CACAAAGAATACAAAAGCTCTTT
1 AAAGAATACGCACA-AAAGAATACAAAAGCTCTTT
849082 GAAATATAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 5 0.17
34 17 0.57
35 8 0.27
ACGTcount: A:0.50, C:0.21, G:0.13, T:0.16
Consensus pattern (35 bp):
AAAGAATACGCACAAAAGAATACAAAAGCTCTTTC
Found at i:855957 original size:1 final size:1
Alignment explanation
Indices: 855951--856001 Score: 102
Period size: 1 Copynumber: 51.0 Consensus size: 1
855941 ATACAAGTCC
855951 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
856002 CAAGACTTTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:856687 original size:14 final size:15
Alignment explanation
Indices: 856670--856698 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
856660 CTTAGTAACG
856670 TCATCATCC-TCATC
1 TCATCATCCATCATC
856684 TCATCATCCATCATC
1 TCATCATCCATCATC
856699 ATCTTTGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (15 bp):
TCATCATCCATCATC
Found at i:862116 original size:17 final size:16
Alignment explanation
Indices: 862094--862162 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 16
862084 ATTTTTTTAC
*
862094 TTATTTTATTATTTTT
1 TTATTTTTTTATTTTT
862110 TTGATTTTTTTATAATTTT
1 TT-ATTTTTTTAT--TTTT
862129 TTATATTTTTTATCTTTT
1 TTAT-TTTTTTAT-TTTT
*
862147 TAATTTTTTTGATTTT
1 TTATTTTTTT-ATTTT
862163 ATATCGAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
16 2 0.04
17 18 0.40
18 11 0.24
19 14 0.31
ACGTcount: A:0.19, C:0.01, G:0.03, T:0.77
Consensus pattern (16 bp):
TTATTTTTTTATTTTT
Found at i:862121 original size:29 final size:27
Alignment explanation
Indices: 862084--862156 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
862074 GTCATTTCAC
*
862084 ATTTTTTTACTTATTTTATTAT-TTTTTT
1 ATTTTTTTA-TAATTTT-TTATATTTTTT
862112 GATTTTTTTATAATTTTTTATATTTTTT
1 -ATTTTTTTATAATTTTTTATATTTTTT
* *
862140 ATCTTTTTA-ATTTTTTT
1 ATTTTTTTATAATTTTTT
862157 GATTTTATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
26 7 0.17
27 12 0.30
28 12 0.30
29 9 0.22
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (27 bp):
ATTTTTTTATAATTTTTTATATTTTTT
Found at i:862136 original size:20 final size:19
Alignment explanation
Indices: 862084--862139 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
862074 GTCATTTCAC
* *
862084 ATTTTTTTACTTATTTTATT
1 ATTTTTTTA-TTTTTTTATA
862104 ATTTTTTTGATTTTTTTATA
1 ATTTTTTT-ATTTTTTTATA
862124 ATTTTTTATATTTTTT
1 ATTTTTT-TATTTTTT
862140 ATCTTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 30 0.94
21 2 0.06
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (19 bp):
ATTTTTTTATTTTTTTATA
Found at i:862156 original size:10 final size:9
Alignment explanation
Indices: 862085--862162 Score: 59
Period size: 9 Copynumber: 8.3 Consensus size: 9
862075 TCATTTCACA
862085 TTTTTTTACT
1 TTTTTTTA-T
862095 TATTTTATTAT
1 T-TTTT-TTAT
*
862106 TTTTTTGA-
1 TTTTTTTAT
862114 TTTTTTTAT
1 TTTTTTTAT
*
862123 AATTTTTTAT
1 -TTTTTTTAT
*
862133 ATTTTTTAT
1 TTTTTTTAT
* *
862142 CTTTTTAAT
1 TTTTTTTAT
*
862151 TTTTTTGAT
1 TTTTTTTAT
862160 TTT
1 TTT
862163 ATATCGAATA
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
8 7 0.12
9 28 0.49
10 13 0.23
11 6 0.11
12 3 0.05
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:862161 original size:25 final size:26
Alignment explanation
Indices: 862117--862167 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
862107 TTTTTGATTT
*
862117 TTTTATAATTTTTTATATTTTTTATC
1 TTTTATAATTTTTTATATTTTATATC
862143 TTTT-TAATTTTTT-TGATTTTATATC
1 TTTTATAATTTTTTAT-ATTTTATATC
862168 GAATAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 18 0.78
26 4 0.17
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (26 bp):
TTTTATAATTTTTTATATTTTATATC
Found at i:862162 original size:8 final size:8
Alignment explanation
Indices: 862094--862162 Score: 66
Period size: 9 Copynumber: 7.9 Consensus size: 8
862084 ATTTTTTTAC
*
862094 TTATTTTA
1 TTATTTTT
862102 TTATTTTT
1 TTATTTTT
862110 TTGATTTTT
1 TT-ATTTTT
862119 TTATAATTTT
1 TTAT--TTTT
862129 TTATATTTT
1 TTAT-TTTT
862138 TTATCTTTT
1 TTAT-TTTT
*
862147 TAATTTTT
1 TTATTTTT
862155 TTGATTTT
1 TT-ATTTT
862163 ATATCGAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
8 16 0.30
9 29 0.55
10 8 0.15
ACGTcount: A:0.19, C:0.01, G:0.03, T:0.77
Consensus pattern (8 bp):
TTATTTTT
Found at i:862754 original size:23 final size:23
Alignment explanation
Indices: 862728--862773 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
862718 TTTTACCAAT
862728 ATTTTTAATCTCATCGAAACTTA
1 ATTTTTAATCTCATCGAAACTTA
862751 ATTTTTAATCTCATCGAAACTTA
1 ATTTTTAATCTCATCGAAACTTA
862774 CTCACCATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTTTTAATCTCATCGAAACTTA
Found at i:863017 original size:16 final size:16
Alignment explanation
Indices: 862992--863049 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 16
862982 TTCATTATTC
*
862992 ATTATATTATTAAAAT
1 ATTATTTTATTAAAAT
*
863008 ATTATTTTATATTAATAT
1 ATTA-TTT-TATTAAAAT
*
863026 TTATATTTTA-TAAAAT
1 AT-TATTTTATTAAAAT
863042 ATTATTTT
1 ATTATTTT
863050 TATTTTTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 6 0.18
16 10 0.29
17 4 0.12
18 12 0.35
19 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTATTTTATTAAAAT
Found at i:863052 original size:16 final size:16
Alignment explanation
Indices: 863002--863052 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
862992 ATTATATTAT
863002 TAAAATATTA-TTTTA
1 TAAAATATTATTTTTA
*
863017 TATTAATATTTATATTTTA
1 TA-AAATA-TTAT-TTTTA
863036 TAAAATATTATTTTTA
1 TAAAATATTATTTTTA
863052 T
1 T
863053 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 2 0.07
16 10 0.33
17 7 0.23
18 4 0.13
19 7 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TAAAATATTATTTTTA
Found at i:865698 original size:13 final size:13
Alignment explanation
Indices: 865680--865705 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
865670 CATTTTGGGA
865680 TGTATCGATACAT
1 TGTATCGATACAT
865693 TGTATCGATACAT
1 TGTATCGATACAT
865706 CTTTGTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:865702 original size:33 final size:31
Alignment explanation
Indices: 865660--865722 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 31
865650 TACAAGCCAA
865660 TGTATCGATACAT-TTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTT--G-TGTATCGATACAT
865693 TGTATCGATACATCTTTGTGTATCGATACA
1 TGTATCGATACATCTTTGTGTATCGATACA
865723 AACAGTAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 12 0.41
32 1 0.03
33 13 0.45
34 3 0.10
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (31 bp):
TGTATCGATACATCTTTGTGTATCGATACAT
Found at i:865809 original size:20 final size:21
Alignment explanation
Indices: 865762--865812 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
865752 GCCAATGACC
*
865762 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
865783 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
865803 TGTATCGATA
1 TGTATCGATA
865813 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:865857 original size:18 final size:19
Alignment explanation
Indices: 865814--865863 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
865804 GTATCGATAA
*
865814 TGTATCGATACTGTGCAATC
1 TGTATCGATACT-TGCAAGC
*
865834 TGTATCGATACTTG-AAGG
1 TGTATCGATACTTGCAAGC
865852 TGTATCG-TACTT
1 TGTATCGATACTT
865864 TTCAGGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 5 0.18
18 9 0.32
19 2 0.07
20 12 0.43
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (19 bp):
TGTATCGATACTTGCAAGC
Found at i:867782 original size:19 final size:20
Alignment explanation
Indices: 867746--867785 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
867736 GGCGCTGTGT
* *
867746 GGGGGTGCCCGGTTGCGACG
1 GGGGGTGCCCGATCGCGACG
867766 GGGGGTG-CCGATCGCGACG
1 GGGGGTGCCCGATCGCGACG
867785 G
1 G
867786 TGAGTACTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.07, C:0.25, G:0.55, T:0.12
Consensus pattern (20 bp):
GGGGGTGCCCGATCGCGACG
Found at i:871424 original size:33 final size:32
Alignment explanation
Indices: 871387--871450 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
871377 TAGCCAAACT
* *
871387 TGTATCGATACACCAAGTATTGTATTGATACAA
1 TGTATCGATACACCAA-AATTGTATCGATACAA
871420 TGTATCGATACACCAAAATTGTATCGATACA
1 TGTATCGATACACCAAAATTGTATCGATACA
871451 TTAGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (32 bp):
TGTATCGATACACCAAAATTGTATCGATACAA
Found at i:871444 original size:19 final size:19
Alignment explanation
Indices: 871380--871450 Score: 64
Period size: 19 Copynumber: 4.0 Consensus size: 19
871370 TTGGCAGTAG
*
871380 CCAAACTTGTATCGATACA
1 CCAAAATTGTATCGATACA
* *
871399 CCAAGTATTGTATTGAT--A
1 CCAA-AATTGTATCGATACA
871417 -C--AA-TGTATCGATACA
1 CCAAAATTGTATCGATACA
871432 CCAAAATTGTATCGATACA
1 CCAAAATTGTATCGATACA
871451 TTAGCTTGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
13 8 0.20
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 3 0.08
19 16 0.40
20 9 0.22
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.30
Consensus pattern (19 bp):
CCAAAATTGTATCGATACA
Found at i:874760 original size:15 final size:15
Alignment explanation
Indices: 874740--874770 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
874730 AAAAAATGTC
*
874740 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
874755 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
874770 C
1 C
874771 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:878185 original size:25 final size:26
Alignment explanation
Indices: 878122--878189 Score: 70
Period size: 25 Copynumber: 2.6 Consensus size: 26
878112 GATATTTGTG
878122 TCTTTTTACTTAAAAAATAATTAATTA
1 TCTTTTTA-TTAAAAAATAATTAATTA
* *
878149 TCTATTTT-TTAAAAACTATATTCA-T-
1 TCT-TTTTATTAAAAAATA-ATTAATTA
878174 TCTTTTTATTAAAAAA
1 TCTTTTTATTAAAAAA
878190 ATTACATTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
24 4 0.11
25 10 0.29
26 10 0.29
27 7 0.20
28 4 0.11
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (26 bp):
TCTTTTTATTAAAAAATAATTAATTA
Found at i:878806 original size:32 final size:32
Alignment explanation
Indices: 878747--878807 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
878737 TCATTTTCGA
* *
878747 GTTCGGATTGTTTTGGGTTCGGATCATTTCAT
1 GTTCGGATTGTTTTGAGTTCAGATCATTTCAT
*
878779 GTTCGTATTGTTTTGAGTTCA-AGTCATTT
1 GTTCGGATTGTTTTGAGTTCAGA-TCATTT
878808 TGGATTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.04
32 24 0.96
ACGTcount: A:0.15, C:0.11, G:0.25, T:0.49
Consensus pattern (32 bp):
GTTCGGATTGTTTTGAGTTCAGATCATTTCAT
Found at i:878895 original size:53 final size:53
Alignment explanation
Indices: 878795--878913 Score: 132
Period size: 53 Copynumber: 2.2 Consensus size: 53
878785 ATTGTTTTGA
* *
878795 GTTCAAGTCATTTTGGATTCGAATCAATCAGGTTTAACACTCGGGTTAATTGG
1 GTTCAAGTCATTCTGGATTCGAATCAATCAGGTTTAACACTCAGGTTAATTGG
* * * * * **
878848 GTTCAGGTCATTCTGGATTCGAGTCAAT-TGAGTTTAATATTCAGGTTAAATCAG
1 GTTCAAGTCATTCTGGATTCGAATCAATCAG-GTTTAACACTCAGGTT-AATTGG
878902 GTTCAAGTCATT
1 GTTCAAGTCATT
878914 TTAGGTTTAG
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.02
53 38 0.70
54 15 0.28
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (53 bp):
GTTCAAGTCATTCTGGATTCGAATCAATCAGGTTTAACACTCAGGTTAATTGG
Found at i:879398 original size:24 final size:23
Alignment explanation
Indices: 879371--879422 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
879361 TTTCTTTTAC
* *
879371 AATAACAATTTAAAAATTTAAACT
1 AATAAAAAATTAAAAATTTAAA-T
879395 AATAAAAAATTAAAAATTTAAAT
1 AATAAAAAATTAAAAATTTAAAT
879418 AATAA
1 AATAA
879423 GCACTTATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (23 bp):
AATAAAAAATTAAAAATTTAAAT
Found at i:880089 original size:20 final size:21
Alignment explanation
Indices: 880053--880091 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
880043 TGTATTATTT
*
880053 TTTTAAATATAATAATAATTA
1 TTTTAAATATAAAAATAATTA
880074 TTTTAAA-ATAAAAATAAT
1 TTTTAAATATAAAAATAAT
880092 CATATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTTAAATATAAAAATAATTA
Found at i:881036 original size:20 final size:19
Alignment explanation
Indices: 880992--881039 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
880982 ATTTTAGTGT
* *
880992 GTATCGATACAATGAACAT
1 GTATCGATACAAAGAACAA
*
881011 GTATCGATACAAAGCAATAA
1 GTATCGATACAAAG-AACAA
881031 GTATCGATA
1 GTATCGATA
881040 TATCTGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.25
Consensus pattern (19 bp):
GTATCGATACAAAGAACAA
Found at i:887588 original size:21 final size:21
Alignment explanation
Indices: 887562--887608 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
887552 ATGCAAGTTC
887562 TTATTCTT-TCTAGTCAATTCA
1 TTATTCTTGT-TAGTCAATTCA
* *
887583 TTATTCTTGTTAGTTAATTCT
1 TTATTCTTGTTAGTCAATTCA
887604 TTATT
1 TTATT
887609 AACACCTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.21, C:0.13, G:0.06, T:0.60
Consensus pattern (21 bp):
TTATTCTTGTTAGTCAATTCA
Found at i:888182 original size:3 final size:3
Alignment explanation
Indices: 888174--888208 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
888164 TGAGTCAACT
888174 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
888209 TTTGATGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:893487 original size:84 final size:87
Alignment explanation
Indices: 893332--893492 Score: 231
Period size: 91 Copynumber: 1.9 Consensus size: 87
893322 GCTCCCCCCT
* *
893332 TCCATGCTGTCCACTGCTGTACATTTCTTCTTGCTTTGCACGTTGCTTGTTGCATGTTTTGTCTC
1 TCCATGCTGTCCACTGCTGCACATTTCTTCTTGCTTTGCACGTTAC-T-TTG-ATGTTTTGTCTC
*
893397 CTATTGCATTTTTTTAATCATCCTC
63 CCATTGCATTTTTTTAATCATCCTC
893422 TCCATGCTGTCCACGTGCTGCACATTTCTTCTTGCTTTGCACGTTAC-TTG-T-TTTT-TCTCCC
1 TCCATGCTGTCCAC-TGCTGCACATTTCTTCTTGCTTTGCACGTTACTTTGATGTTTTGTCTCCC
893483 ATTGCATTTT
65 ATTGCATTTT
893493 GTTTGCTGCA
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
84 15 0.22
85 4 0.06
86 1 0.01
88 3 0.04
90 14 0.21
91 30 0.45
ACGTcount: A:0.12, C:0.27, G:0.14, T:0.47
Consensus pattern (87 bp):
TCCATGCTGTCCACTGCTGCACATTTCTTCTTGCTTTGCACGTTACTTTGATGTTTTGTCTCCCA
TTGCATTTTTTTAATCATCCTC
Found at i:893723 original size:11 final size:11
Alignment explanation
Indices: 893693--893751 Score: 54
Period size: 10 Copynumber: 5.6 Consensus size: 11
893683 GTCATTTCAC
893693 ATTTTTTTACTT
1 ATTTTTTTA-TT
*
893705 ATTATTTTATT
1 ATTTTTTTATT
*
893716 A-TTTTTT-TG
1 ATTTTTTTATT
893725 ATTTTTTTA-T
1 ATTTTTTTATT
*
893735 AATTTTTTA-T
1 ATTTTTTTATT
893745 ATTTTTT
1 ATTTTTT
893752 ATCTTTTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 26 0.67
11 3 0.08
12 8 0.21
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (11 bp):
ATTTTTTTATT
Found at i:893732 original size:20 final size:20
Alignment explanation
Indices: 893704--893751 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
893694 TTTTTTTACT
* *
893704 TATTATTTTATTATTTTTT-
1 TATTTTTTTATAATTTTTTA
893723 TGATTTTTTTATAATTTTTTA
1 T-ATTTTTTTATAATTTTTTA
893744 TATTTTTT
1 TATTTTTT
893752 ATCTTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
TATTTTTTTATAATTTTTTA
Found at i:893734 original size:17 final size:16
Alignment explanation
Indices: 893693--893774 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 16
893683 GTCATTTCAC
* *
893693 ATTTTTTTA-CTTATT
1 ATTTTTTTATTTTTTT
*
893708 ATTTTATTATTTTTTT
1 ATTTTTTTATTTTTTT
893724 GATTTTTTTATAATTTTTT
1 -ATTTTTTTAT--TTTTTT
*
893743 ATATTTTTTATCTTTTTA
1 AT-TTTTTTAT-TTTTTT
893761 ATTTTTTTGATTTT
1 ATTTTTTT-ATTTT
893775 ATATCGAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
15 8 0.15
16 4 0.07
17 18 0.33
18 11 0.20
19 14 0.25
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (16 bp):
ATTTTTTTATTTTTTT
Found at i:893774 original size:8 final size:8
Alignment explanation
Indices: 893693--893774 Score: 67
Period size: 9 Copynumber: 9.6 Consensus size: 8
893683 GTCATTTCAC
893693 ATTTTTTT
1 ATTTTTTT
* *
893701 A-CTTATT
1 ATTTTTTT
*
893708 ATTTTATT
1 ATTTTTTT
893716 ATTTTTTT
1 ATTTTTTT
893724 GATTTTTTT
1 -ATTTTTTT
893733 ATAATTTTTT
1 AT--TTTTTT
893743 ATATTTTTT
1 AT-TTTTTT
*
893752 ATCTTTTTA
1 AT-TTTTTT
893761 ATTTTTTT
1 ATTTTTTT
893769 GATTTT
1 -ATTTT
893775 ATATCGAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
7 5 0.08
8 20 0.32
9 29 0.47
10 8 0.13
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (8 bp):
ATTTTTTT
Found at i:893779 original size:25 final size:26
Alignment explanation
Indices: 893729--893779 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
893719 TTTTTGATTT
*
893729 TTTTATAATTTTTTATATTTTTTATC
1 TTTTATAATTTTTTATATTTTATATC
893755 TTTT-TAATTTTTT-TGATTTTATATC
1 TTTTATAATTTTTTAT-ATTTTATATC
893780 GAATAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 18 0.78
26 4 0.17
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (26 bp):
TTTTATAATTTTTTATATTTTATATC
Found at i:894418 original size:23 final size:23
Alignment explanation
Indices: 894392--894437 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
894382 TTTTACCAAT
894392 ATTTTTAATCTCATCGAAACTTA
1 ATTTTTAATCTCATCGAAACTTA
894415 ATTTTTAATCTCATCGAAACTTA
1 ATTTTTAATCTCATCGAAACTTA
894438 TCTCACCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTTTTAATCTCATCGAAACTTA
Found at i:894685 original size:17 final size:17
Alignment explanation
Indices: 894665--894722 Score: 64
Period size: 17 Copynumber: 3.3 Consensus size: 17
894655 ATTCATTATA
894665 TTATTAAAATATTATTT
1 TTATTAAAATATTATTT
*
894682 TTA-TATTAATATTTATATT
1 TTATTA-AAATA-TTAT-TT
*
894701 TTATAAAAATATTATTT
1 TTATTAAAATATTATTT
894718 TTATT
1 TTATT
894723 TTTGTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 2 0.06
17 13 0.39
18 8 0.24
19 9 0.27
20 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTAAAATATTATTT
Found at i:894690 original size:19 final size:19
Alignment explanation
Indices: 894666--894721 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
894656 TTCATTATAT
894666 TATTAAAATATTATTTTTA
1 TATTAAAATATTATTTTTA
*
894685 TATTAATAT-TTATATTTTA
1 TATTAAAATATTAT-TTTTA
894704 TA--AAAATATTATTTTTA
1 TATTAAAATATTATTTTTA
894721 T
1 T
894722 TTTTGTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 10 0.30
18 8 0.24
19 15 0.45
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTAAAATATTATTTTTA
Found at i:897446 original size:13 final size:13
Alignment explanation
Indices: 897428--897453 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
897418 CATTTTGGGA
897428 TGTATCGATACAT
1 TGTATCGATACAT
897441 TGTATCGATACAT
1 TGTATCGATACAT
897454 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:897450 original size:33 final size:32
Alignment explanation
Indices: 897408--897471 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
897398 TACAAGCCAA
*
897408 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
* *
897441 TGTATCGATACATCTTGTGTGTATTGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
897472 AACAGTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:897549 original size:20 final size:21
Alignment explanation
Indices: 897502--897554 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
897492 ACCAATGACC
*
897502 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
897523 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
897543 TGTATCGATACA
1 TGTATCGATACA
897555 ATGTATCTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:907521 original size:15 final size:16
Alignment explanation
Indices: 907498--907533 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
907488 AATAAAACTA
*
907498 ATAACTTTATAG-TAT
1 ATAAATTTATAGATAT
907513 ATAAATTTATAGATAT
1 ATAAATTTATAGATAT
907529 ATAAA
1 ATAAA
907534 AATTATCGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (16 bp):
ATAAATTTATAGATAT
Found at i:909425 original size:2 final size:2
Alignment explanation
Indices: 909420--909456 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
909410 AAAAAGGGCA
*
909420 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
909457 AGTGCCACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:912494 original size:4 final size:4
Alignment explanation
Indices: 912481--912511 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
912471 AATTGAGGGG
912481 GAAA -AAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
912512 AAAAAAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:918312 original size:19 final size:20
Alignment explanation
Indices: 918290--918330 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
918280 ATTTTTAGGG
* *
918290 TAAATGT-TTTGTTTTATTT
1 TAAATGTATTTCTTTTAATT
918309 TAAATGTATTTCTTTTAATT
1 TAAATGTATTTCTTTTAATT
918329 TA
1 TA
918331 TGCATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (20 bp):
TAAATGTATTTCTTTTAATT
Found at i:918609 original size:5 final size:5
Alignment explanation
Indices: 918599--918649 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
918589 TTTAATGAAG
*
918599 AAGAA AAGAA AGGAA AAGAAAA AAGAA AAGAA AAGAA AAG-A AAG-A AAGAA
1 AAGAA AAGAA AAGAA AAG--AA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA
918649 A
1 A
918650 GGGAGAAGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
4 8 0.20
5 28 0.68
7 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:918616 original size:10 final size:10
Alignment explanation
Indices: 918601--918665 Score: 62
Period size: 10 Copynumber: 6.4 Consensus size: 10
918591 TAATGAAGAA
918601 GAAAAGAAAG
1 GAAAAGAAAG
*
918611 GAAAAGAAAAAA
1 GAAAAG--AAAG
*
918623 GAAAAGAAAA
1 GAAAAGAAAG
918633 GAAAAGAAA-
1 GAAAAGAAAG
918642 G-AAAGAAAGG
1 GAAAAGAAA-G
*
918652 GAGAAGAAAG
1 GAAAAGAAAG
918662 GAAA
1 GAAA
918666 GGGAAAATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
8 7 0.15
9 1 0.02
10 24 0.51
11 6 0.13
12 9 0.19
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (10 bp):
GAAAAGAAAG
Found at i:918624 original size:17 final size:17
Alignment explanation
Indices: 918596--918637 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
918586 TTCTTTAATG
*
918596 AAGAAGAAAAGAAAGGAA
1 AAGAA-AAAAGAAAAGAA
918614 AAGAAAAAAGAAAAGAA
1 AAGAAAAAAGAAAAGAA
918631 AAGAAAA
1 AAGAAAA
918638 GAAAGAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAGAAAAGAA
Found at i:918627 original size:22 final size:23
Alignment explanation
Indices: 918599--918649 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 23
918589 TTTAATGAAG
*
918599 AAGAAAAGAAAGGAAAAGAAA-A
1 AAGAAAAGAAAAGAAAAGAAAGA
918621 AAGAAAAGAAAAGAAAAGAAAGA
1 AAGAAAAGAAAAGAAAAGAAAGA
918644 AAGAAA
1 AAGAAA
918650 GGGAGAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 20 0.74
23 7 0.26
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (23 bp):
AAGAAAAGAAAAGAAAAGAAAGA
Found at i:918632 original size:27 final size:27
Alignment explanation
Indices: 918599--918650 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
918589 TTTAATGAAG
*
918599 AAGAAAAGAAAGGAAAAGAAA-AAAGAA
1 AAGAAAAGAAAAG-AAAGAAAGAAAGAA
918626 AAGAAAAGAAAAGAAAGAAAGAAAG
1 AAGAAAAGAAAAGAAAGAAAGAAAG
918651 GGAGAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (27 bp):
AAGAAAAGAAAAGAAAGAAAGAAAGAA
Found at i:918650 original size:17 final size:17
Alignment explanation
Indices: 918596--918649 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 17
918586 TTCTTTAATG
*
918596 AAGAAGAAAAGAAAGGAA
1 AAGAAAAAAAGAAA-GAA
918614 AAG-AAAAAAGAAAAGAA
1 AAGAAAAAAAG-AAAGAA
918631 AAGAAAAGAAAGAAAGAA
1 AAGAAAA-AAAGAAAGAA
918649 A
1 A
918650 GGGAGAAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 12 0.38
18 16 0.50
19 4 0.12
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAGAAAGAA
Found at i:918656 original size:16 final size:16
Alignment explanation
Indices: 918640--918669 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
918630 AAAGAAAAGA
918640 AAGAAA-GAAAGGGAG
1 AAGAAAGGAAAGGGAG
918655 AAGAAAGGAAAGGGA
1 AAGAAAGGAAAGGGA
918670 AAATTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (16 bp):
AAGAAAGGAAAGGGAG
Found at i:919119 original size:11 final size:11
Alignment explanation
Indices: 919099--919140 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
919089 ATACGTTTAT
919099 ATATTTATATC
1 ATATTTATATC
* *
919110 ATATTCATATT
1 ATATTTATATC
*
919121 ATTTTTATATC
1 ATATTTATATC
919132 ATA-TTATAT
1 ATATTTATAT
919141 TTTTATTATT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 6 0.24
11 19 0.76
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (11 bp):
ATATTTATATC
Found at i:919183 original size:22 final size:22
Alignment explanation
Indices: 919132--919190 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
919122 TTTTTATATC
* * *
919132 ATATTATATTTTTATTATTTTTT
1 ATATTAT-TTTATATCATTTTTA
919155 ATATTATTTTCATATCATTTTTA
1 ATATTATTTT-ATATCATTTTTA
919178 AT-TTATTTTATAT
1 ATATTATTTTATAT
919191 TTTACATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.12
22 10 0.31
23 18 0.56
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (22 bp):
ATATTATTTTATATCATTTTTA
Found at i:919194 original size:39 final size:39
Alignment explanation
Indices: 919098--919194 Score: 101
Period size: 39 Copynumber: 2.5 Consensus size: 39
919088 GATACGTTTA
* * * *
919098 TATATTTATATCATA-TTCATATTATTTTTATATCATAT
1 TATATTTTTATTATATTTTATATTATTTTCATATCATAT
*
919136 TATATTTTTATTATTTTTTATATTATTTTCATATCAT-T
1 TATATTTTTATTATATTTTATATTATTTTCATATCATAT
*
919174 TTTAATTTATT-TTATATTTTA
1 TAT-ATTT-TTATTATATTTTA
919195 CATAATTTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
38 15 0.31
39 32 0.65
40 2 0.04
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (39 bp):
TATATTTTTATTATATTTTATATTATTTTCATATCATAT
Found at i:919238 original size:35 final size:32
Alignment explanation
Indices: 919177--919247 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 32
919167 TATCATTTTT
*
919177 AATTTATTTTATATTTTACATAATTTATTATAA
1 AATTTATTTTATATTTTAAATAATTTATT-TAA
*
919210 CAATTTAATTTTA-ATTTTAAATTTATTTATTTAA
1 -AATTT-ATTTTATATTTTAAA-TAATTTATTTAA
919244 AATT
1 AATT
919248 AAATCATCGC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
33 4 0.12
34 15 0.45
35 14 0.42
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (32 bp):
AATTTATTTTATATTTTAAATAATTTATTTAA
Found at i:919996 original size:19 final size:20
Alignment explanation
Indices: 919970--920013 Score: 65
Period size: 18 Copynumber: 2.3 Consensus size: 20
919960 TTAAATATAT
*
919970 AATTTAAAAATAA-TAA-AA
1 AATTTTAAAATAATTAATAA
919988 AATTTTAAAATAATTAATAA
1 AATTTTAAAATAATTAATAA
920008 AATTTT
1 AATTTT
920014 TTTAAGTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.52
19 3 0.13
20 8 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTTTAAAATAATTAATAA
Found at i:924427 original size:2 final size:2
Alignment explanation
Indices: 924420--924451 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
924410 GCCCTTTGTC
*
924420 TA TA TA TA TA TA TA TC TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
924452 ACACCTTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:924707 original size:15 final size:14
Alignment explanation
Indices: 924677--924705 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
924667 AAAATAGATA
924677 TAGATATTAATTTT
1 TAGATATTAATTTT
924691 TAGATATTAATTTT
1 TAGATATTAATTTT
924705 T
1 T
924706 TAAATTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TAGATATTAATTTT
Found at i:924766 original size:53 final size:53
Alignment explanation
Indices: 924707--924811 Score: 158
Period size: 53 Copynumber: 2.0 Consensus size: 53
924697 TTAATTTTTT
*
924707 AAATTTATGTTATTTTTATAAATAATAAATTTAAATATCT-ATATTTATTATTC
1 AAATTTATATTATTTTTATAAATAATAAATTTAAATATCTGA-ATTTATTATTC
* * *
924760 AAATTTATATTATTTTTATAAATAATATATTTAATTATTTGAATTTATTATT
1 AAATTTATATTATTTTTATAAATAATAAATTTAAATATCTGAATTTATTATT
924812 TATTTATTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
53 46 0.98
54 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (53 bp):
AAATTTATATTATTTTTATAAATAATAAATTTAAATATCTGAATTTATTATTC
Done.