genome.fa.s931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold931
Parameters: 2 7 7 80 10 50 1000
Length:  105319

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665--697	15	2.2	15	89	10	50	27	12	12	48	1.76
6626--6700	20	3.8	19	78	7	87	41	12	13	33	1.81
6623--6700	40	2.0	39	89	2	120	41	12	12	33	1.82
7261--8350	29	37.9	29	83	7	1259	22	18	31	28	1.97
7261--8353	57	19.0	57	83	7	1297	22	18	31	28	1.97
7261--8352	28	38.0	29	84	7	1261	22	18	31	28	1.97
9574--9628	1	55.0	1	81	0	65	0	1	7	90	0.51
9564--9616	23	2.3	23	83	3	61	1	3	7	86	0.75
9574--9629	23	2.4	23	90	0	85	0	1	8	89	0.56
9581--9626	15	3.1	15	90	3	76	0	0	8	91	0.43
22677--22730	21	2.5	22	96	3	101	61	9	11	18	1.55
23643--23713	20	3.5	20	82	3	81	40	11	12	35	1.79
33184--33282	19	5.8	19	73	26	114	41	16	15	27	1.88
33202--33259	13	4.0	13	76	23	62	39	15	15	29	1.88
33184--33278	32	3.0	32	100	0	190	40	15	15	28	1.89
33214--33299	19	4.7	19	73	19	76	44	15	13	26	1.84
35500--35549	21	2.3	21	80	10	57	56	4	18	22	1.58
39415--39452	13	2.9	13	96	0	67	34	18	15	31	1.92
41071--41113	23	2.0	21	81	9	50	13	9	16	60	1.58
41263--41403	59	2.4	59	97	0	264	38	5	23	32	1.78
42052--42114	19	3.6	19	74	24	75	39	14	15	30	1.87
42070--42127	13	4.0	13	72	23	53	39	13	15	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42052--42131	32	2.5	32	97	0	151	41	15	15	28	1.87
45126--45574	167	2.7	164	83	4	505	52	7	12	27	1.65
45561--45585	7	3.6	7	100	0	50	68	0	0	32	0.90
48439--48613	20	9.8	19	70	24	125	28	17	13	41	1.86
48477--48572	13	8.3	13	73	25	99	28	17	13	40	1.88
48457--48592	33	4.1	33	96	0	245	27	17	13	41	1.87
48439--48560	53	2.3	53	84	8	151	26	17	14	41	1.88
51070--51239	51	3.3	51	84	1	153	29	28	13	28	1.94
52306--52425	27	4.2	29	81	13	142	0	0	15	84	0.68
52311--52429	55	2.2	55	90	6	188	0	0	15	84	0.63
52313--52429	50	2.3	50	89	5	191	0	0	15	84	0.62
52312--52428	1	117.0	1	70	0	81	0	0	14	85	0.60
52332--52445	55	2.1	54	80	3	122	2	3	17	76	1.05
66284--66334	20	2.5	20	87	6	68	41	11	15	31	1.83
66700--66940	52	4.7	52	72	6	202	27	24	14	34	1.94
66670--66835	51	3.2	51	74	1	188	27	21	15	36	1.93
66665--66883	103	2.1	103	90	0	339	27	24	15	32	1.95
66950--67167	61	3.7	61	72	15	215	22	26	15	35	1.94
66950--67225	113	2.5	112	84	3	347	22	25	14	37	1.92
67142--67325	51	3.6	50	72	10	149	22	22	17	37	1.94
67895--67948	20	2.7	20	85	8	65	38	16	14	29	1.89
67955--68086	59	2.2	59	91	0	219	36	12	18	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69037--69077	21	2.0	22	85	9	59	21	19	17	41	1.90
70082--70124	19	2.2	20	87	4	61	37	11	13	37	1.82
70152--70205	20	2.7	20	82	5	65	35	12	14	37	1.85
76282--76314	11	3.1	11	91	4	50	33	12	0	54	1.37
80323--80397	20	3.8	19	70	22	57	48	1	0	50	1.09
80345--80385	21	2.0	20	90	4	64	51	0	0	48	1.00
86965--86993	2	14.5	2	100	0	58	48	0	0	51	1.00
89107--89165	29	2.0	29	93	0	100	33	16	3	45	1.64
97234--97288	26	2.1	26	100	0	110	41	7	18	32	1.78
98052--98103	27	2.0	26	84	3	68	42	3	5	48	1.45
98381--98574	107	1.8	105	85	5	273	45	4	8	41	1.55
99170--99213	22	2.0	22	95	0	79	52	9	2	36	1.46
99665--99693	2	14.5	2	100	0	58	51	0	0	48	1.00
104541--104704	44	3.7	44	78	5	163	51	10	14	22	1.73

Tables:   1

The End!