genome.fa.s936.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold936
Parameters: 2 7 7 80 10 50 1000
Length:  46820

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7913--8083	51	3.3	51	79	4	198	32	11	26	29	1.92
10619--10644	13	2.0	13	100	0	52	38	15	15	30	1.88
10598--10664	33	2.0	33	88	0	98	43	16	14	25	1.86
10684--10751	19	3.9	18	76	23	83	38	14	11	35	1.83
10706--10730	13	1.9	13	100	0	50	32	16	16	36	1.90
10687--10749	32	2.0	32	96	0	117	36	15	12	34	1.86
10807--10863	21	2.7	21	97	0	105	36	19	10	33	1.86
10868--10935	1	68.0	1	95	0	109	2	1	0	95	0.30
11144--11168	13	1.9	13	100	0	50	32	16	16	36	1.90
11237--11300	32	2.0	33	90	9	105	34	18	15	31	1.93
17061--17226	51	3.3	51	76	3	174	30	24	12	33	1.91
17165--17385	79	2.8	79	90	1	336	28	23	13	33	1.93
19788--19842	19	2.8	19	86	2	74	36	18	16	29	1.92
19827--19853	13	2.1	13	100	0	54	40	14	14	29	1.86
21511--21601	20	4.6	19	79	8	85	30	17	14	37	1.90
21511--21602	39	2.3	40	83	9	109	30	17	15	36	1.91
22095--22138	23	1.9	23	81	9	54	29	4	22	43	1.73
22654--22722	33	2.1	33	86	5	95	30	11	18	39	1.87
28825--28872	21	2.4	19	80	13	51	41	20	0	37	1.53
30280--30311	15	2.1	15	94	0	55	25	12	31	31	1.92
31256--31315	13	5.1	13	67	22	51	33	13	16	36	1.88
31237--31315	33	2.4	34	81	10	92	31	13	16	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31256--31336	33	2.5	33	87	4	110	35	12	17	34	1.87
31238--31426	86	2.2	86	100	0	378	34	13	17	34	1.89
31342--31401	13	5.1	13	67	22	51	33	13	16	36	1.88
31324--31401	33	2.4	34	80	6	97	32	14	16	37	1.89
31289--31389	53	1.9	53	87	4	150	33	12	16	36	1.87
31342--31422	33	2.5	33	87	4	110	35	12	17	34	1.87
37020--37153	50	2.6	51	83	2	180	43	11	15	29	1.82
37720--37758	20	2.0	20	94	0	69	48	5	12	33	1.63
41389--41433	12	3.9	12	77	19	51	77	0	15	6	0.96
43861--44239	155	2.4	153	81	5	413	41	20	15	23	1.90
45577--45615	19	2.1	19	95	0	69	30	10	15	43	1.80
45666--45691	13	2.0	13	100	0	52	30	15	15	38	1.88
45647--45709	32	2.0	32	87	6	92	26	15	15	41	1.88
45750--45821	20	3.6	20	77	7	83	33	19	11	36	1.87
45729--45821	40	2.3	41	92	1	152	32	18	10	38	1.85

Tables:   1

The End!