genome.fa.s938.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold938
Parameters: 2 7 7 80 10 50 1000
Length:  109306

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5328--5575	125	2.0	127	93	2	430	30	15	13	40	1.86
7819--7844	1	26.0	1	100	0	52	0	0	100	0	0.00
8144--8214	30	2.5	29	78	10	76	52	0	0	47	1.00
13897--13933	10	3.7	10	88	0	56	21	21	8	48	1.76
14004--14040	20	1.9	20	88	5	58	35	10	18	35	1.86
16026--16069	21	2.1	21	91	0	70	61	0	18	20	1.35
19346--19373	13	2.2	13	100	0	56	35	14	10	39	1.81
22995--23055	21	3.0	21	78	7	72	36	13	18	32	1.89
23100--23130	13	2.4	13	94	0	53	35	16	12	35	1.87
23084--23150	33	2.0	32	86	11	91	34	13	19	32	1.91
29284--29312	13	2.2	13	100	0	58	27	13	17	41	1.87
31194--31219	13	2.0	13	100	0	52	30	15	15	38	1.88
31209--31260	21	2.6	21	87	6	72	38	15	13	32	1.86
31305--31335	13	2.4	13	94	0	53	35	16	12	35	1.87
31289--31355	33	2.0	32	88	11	100	35	13	17	32	1.89
32396--32466	27	2.6	27	100	0	142	12	19	45	22	1.84
34568--34716	52	2.9	51	89	4	235	30	17	18	32	1.94
34705--34729	13	1.9	13	100	0	50	36	16	16	32	1.90
34768--34834	19	3.9	18	76	23	81	46	11	11	29	1.77
34791--34847	13	3.9	13	76	24	60	38	14	14	33	1.85
34770--34867	32	3.0	32	93	1	160	40	14	12	32	1.83
36656--36707	21	2.4	24	75	18	60	44	13	21	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37602--37669	30	2.2	31	89	5	102	38	14	17	29	1.90
38566--38801	97	2.5	94	79	2	229	33	13	22	29	1.93
38566--38801	95	2.5	95	79	1	238	33	13	22	29	1.93
41127--41201	39	1.9	39	86	5	107	33	10	22	33	1.89
41295--41370	21	3.7	20	73	18	59	27	14	13	44	1.82
45042--45143	20	4.8	20	70	19	80	42	12	15	29	1.84
47338--47397	20	3.0	20	82	2	75	33	15	11	40	1.83
48609--48634	13	2.0	13	100	0	52	38	15	15	30	1.88
48591--48654	32	2.0	33	87	3	94	40	17	14	28	1.88
50854--50903	21	2.3	21	80	10	57	58	4	16	22	1.55
52701--52731	15	2.1	15	93	0	53	48	16	22	12	1.80
54805--54842	13	2.9	13	92	0	58	36	18	13	31	1.89
61467--61814	30	11.6	30	77	9	234	29	28	15	26	1.96
61467--61608	57	2.4	59	84	3	180	30	28	18	23	1.97
61687--61840	30	5.3	29	84	7	197	33	30	16	19	1.94
61687--61899	58	3.6	56	78	12	189	31	32	17	18	1.94
61779--61899	31	4.0	32	82	10	141	30	35	18	15	1.92
61892--62126	49	4.7	49	90	1	353	24	25	18	31	1.97
61892--62174	49	5.5	53	86	4	214	25	25	16	32	1.96
62836--62887	10	5.4	10	81	9	72	25	7	3	63	1.38
62836--62888	18	2.8	19	86	13	74	24	7	5	62	1.44
63047--63113	33	2.0	33	88	0	98	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63067--63091	13	1.9	13	100	0	50	36	16	16	32	1.90
63154--63178	13	1.9	13	100	0	50	32	16	16	36	1.90
63187--63310	52	2.4	51	89	2	194	37	18	16	28	1.92
68774--68818	15	3.0	15	76	0	54	42	42	0	15	1.47
74635--74788	28	5.5	28	76	6	152	28	30	17	23	1.97
74627--74796	56	3.0	56	86	0	241	30	30	17	21	1.96
74807--74895	31	2.7	31	81	10	81	29	30	15	24	1.96
74843--74904	33	1.9	33	90	3	99	25	29	19	25	1.99
79607--79657	20	2.5	20	90	3	75	43	11	17	27	1.84
81059--81083	13	1.9	13	100	0	50	32	16	16	36	1.90
82291--82381	45	2.0	45	89	0	137	28	21	19	29	1.98
89566--89807	29	7.8	32	72	13	148	27	26	11	34	1.91
89596--90005	28	13.9	29	73	14	162	27	26	15	30	1.96
89566--89823	62	4.2	61	76	11	222	27	27	11	33	1.91
89594--89906	30	10.5	30	73	14	139	27	26	13	32	1.93
89657--90119	28	15.9	28	73	11	211	27	28	16	27	1.97
89801--90075	86	3.2	83	77	8	266	27	29	18	24	1.98
89801--90075	114	2.4	114	87	3	376	27	29	18	24	1.98
90142--90272	30	4.6	28	76	8	120	30	25	13	29	1.94
90146--90220	28	2.6	28	89	4	105	33	26	12	28	1.92
90134--90258	30	4.2	30	76	8	130	31	24	16	28	1.96
92513--92699	79	2.4	79	79	1	187	33	16	26	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92651--92727	28	2.8	28	85	0	91	24	19	32	23	1.97
92710--92932	52	4.3	51	81	7	225	34	12	23	29	1.91
92951--93069	51	2.3	52	82	10	136	32	11	21	33	1.90
92814--93065	133	1.9	131	82	4	319	32	13	23	30	1.93
95432--95457	13	2.0	13	100	0	52	38	15	15	30	1.88
95411--95477	33	2.0	33	88	0	98	43	16	14	25	1.86
95497--95564	19	3.9	18	76	23	83	38	14	11	35	1.83
95519--95543	13	1.9	13	100	0	50	32	16	16	36	1.90
95500--95562	32	2.0	32	96	0	117	36	15	12	34	1.86
101460--101512	21	2.5	21	84	0	70	35	15	16	32	1.90
102386--102426	3	13.7	3	100	0	82	68	0	0	31	0.90
109181--109230	21	2.4	19	76	20	55	46	0	0	54	1.00
108977--109210	96	2.3	101	77	15	236	46	3	3	46	1.39

Tables:   1

The End!