genome.fa.s939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold939
Parameters: 2 7 7 80 10 50 1000
Length:  12254

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1619--1676	20	2.7	23	82	12	61	60	0	1	37	1.07
1713--1771	9	7.0	9	76	18	56	55	0	10	33	1.33
1722--1795	23	3.4	23	75	17	95	56	0	9	33	1.31
1703--1797	32	3.2	30	78	11	106	56	0	8	34	1.29
1686--1815	41	3.2	41	89	8	178	56	0	9	34	1.31
1728--1831	13	8.1	13	73	13	81	57	0	10	31	1.33
1812--1861	20	2.3	22	80	20	68	54	4	6	36	1.44
1824--1863	20	2.0	20	100	0	80	55	5	5	35	1.44
1855--1887	14	2.4	14	94	0	57	60	0	3	36	1.12
5478--5504	10	2.7	10	100	0	54	18	11	0	70	1.16
6135--6166	11	2.9	11	100	0	64	56	0	0	43	0.99
6159--6227	13	5.2	13	80	13	68	57	1	8	31	1.38
6135--6206	22	3.0	22	74	23	65	55	1	5	37	1.32
6203--6231	13	2.2	13	100	0	58	62	0	6	31	1.22
6251--6280	13	2.2	14	94	5	53	66	0	10	23	1.21
10282--10317	18	2.0	18	88	0	54	0	52	2	44	1.15
10313--10356	18	2.4	18	100	0	88	13	13	0	72	1.12
10312--10359	22	2.2	22	85	14	64	12	14	0	72	1.11
10819--10856	9	4.2	9	83	10	51	55	2	0	42	1.14
10806--10855	18	2.7	18	82	14	50	58	4	2	36	1.29
10870--10922	24	2.2	23	83	10	70	39	5	3	50	1.44
10914--10940	12	2.2	12	100	0	54	44	0	14	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10950--11005	14	4.0	14	84	9	78	41	0	8	50	1.34
10946--11001	28	2.0	28	100	0	112	42	0	7	50	1.30
11455--11517	24	2.6	24	92	0	108	42	6	3	47	1.44
11498--11599	25	4.0	26	82	7	102	38	3	0	57	1.17
11516--11599	17	5.4	17	75	23	71	36	3	0	59	1.15
11509--11599	9	10.6	9	71	21	61	38	3	0	58	1.15

Tables:   1

The End!