Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold940
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67133
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Found at i:3047 original size:28 final size:28
Alignment explanation
Indices: 2966--3047 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
2956 TTTTGGAGAT
*
2966 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
2994 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
3022 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
3048 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:3153 original size:105 final size:104
Alignment explanation
Indices: 3025--3367 Score: 286
Period size: 105 Copynumber: 3.3 Consensus size: 104
3015 CCGATGAAAT
* * *
3025 AACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAATTGGAG
1 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
* *
3090 TATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAA
66 TATCCCCGATTAAAGGAGAAGTTGGTGTTCTGAAAATAA
* * * * * *
3129 AACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATA-TTTTGAAAATAAAGTCGGGGTTGGA
1 AA-CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGA
* * * * ** *
3193 GTATCCCCTCAGAAATAACGG-G--GTTGGAGTATCCCCGATGAT-T
65 GTAT-CCC-C-G-ATTAAAGGAGAAGTTGGTGT-T--CTGAAAATAA
* *
3236 AACGGGGTTGGAGTGTCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGG
1 AACGGGGTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTGG
* ** * *
3301 AGTATCCCCGATTATA-GA-AAGTTAATGTTTTGAAAGTAA
64 AGTATCCCCGATTAAAGGAGAAGTTGGTGTTCTGAAAATAA
* * *
3340 AATCGGAGTTGGAATATCCTCGATTGTG
1 AA-CGGGGTTGGAGTATCCCCGATTGTG
3368 GAGAATTGAG
Statistics
Matches: 181, Mismatches: 42, Indels: 31
0.71 0.17 0.12
Matches are distributed among these distances:
103 3 0.02
104 30 0.17
105 65 0.36
106 33 0.18
107 11 0.06
108 13 0.07
109 26 0.14
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (104 bp):
AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
TATCCCCGATTAAAGGAGAAGTTGGTGTTCTGAAAATAA
Found at i:3190 original size:51 final size:51
Alignment explanation
Indices: 3030--3200 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
3020 GAAATAACGA
* * *
3030 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
3082 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
3135 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
3186 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3201 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 32 0.33
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:3246 original size:27 final size:28
Alignment explanation
Indices: 3183--3258 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
3173 AAAATAAAGT
*
3183 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
3211 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
3238 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
3259 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:5743 original size:13 final size:13
Alignment explanation
Indices: 5725--5750 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5715 ACAAAGATCC
5725 ATGTATCGATACA
1 ATGTATCGATACA
5738 ATGTATCGATACA
1 ATGTATCGATACA
5751 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5746 original size:33 final size:33
Alignment explanation
Indices: 5704--5770 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
5694 AAAATTTCCA
***
5704 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
5737 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
5770 A
1 A
5771 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:5814 original size:19 final size:18
Alignment explanation
Indices: 5790--5857 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
5780 CAGTAGCTAA
5790 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
5809 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
5824 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
5841 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
5858 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:5830 original size:13 final size:13
Alignment explanation
Indices: 5812--5836 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5802 ACAATACTTA
5812 TGTATCGATACAT
1 TGTATCGATACAT
5825 TGTATCGATACA
1 TGTATCGATACA
5837 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5834 original size:32 final size:32
Alignment explanation
Indices: 5793--5855 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
5783 TAGCTAATTA
*
5793 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
5825 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
5856 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:5937 original size:21 final size:21
Alignment explanation
Indices: 5913--5969 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
5903 CATTTGTAGG
5913 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
5934 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
5955 ATGTATCGATACATT
1 ATGTATCGATACATT
5970 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:6351 original size:27 final size:27
Alignment explanation
Indices: 6312--6368 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
6302 CACGAATTAT
* *
6312 TAATATGTCAAAATTTA-TATAAATATA
1 TAATATGTCAAAAATAATTAT-AATATA
* *
6339 TAATATTTTAAAAATAATTATAATATA
1 TAATATGTCAAAAATAATTATAATATA
6366 TAA
1 TAA
6369 AAAAACATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 22 0.88
28 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (27 bp):
TAATATGTCAAAAATAATTATAATATA
Found at i:6355 original size:22 final size:21
Alignment explanation
Indices: 6330--6399 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 21
6320 CAAAATTTAT
*
6330 ATAAATATATAATATTTTAAAA
1 ATAAATATATAATA-TATAAAA
6352 AT-AAT-TATAATATATAAAA
1 ATAAATATATAATATATAAAA
*
6371 A-AACATATAT-ATATA-AAAC
1 ATAA-ATATATAATATATAAAA
*
6390 ATAAAAATAT
1 ATAAATATAT
6400 GAATTTTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
19 17 0.41
20 16 0.39
21 6 0.15
22 2 0.05
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (21 bp):
ATAAATATATAATATATAAAA
Found at i:6371 original size:20 final size:19
Alignment explanation
Indices: 6332--6393 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 19
6322 AAATTTATAT
* *
6332 AAAT-ATATAATATTTTAA
1 AAATAATATAATATATAAA
6350 AAATAATTATAATATATAAA
1 AAATAA-TATAATATATAAA
6370 AAA-ACATAT-ATATATAAA
1 AAATA-ATATAATATATAAA
*
6388 ACATAA
1 AAATAA
6394 AAATATGAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 16 0.43
19 6 0.16
20 15 0.41
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATAATATAATATATAAA
Found at i:7496 original size:30 final size:31
Alignment explanation
Indices: 7430--7498 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
7420 TTAAGTAGCT
* * * *
7430 AAATTCAATTAAAGATCCAAATTCAGTAGTA
1 AAATTCAACTAAAAATCAAAATTCAGTAGAA
*
7461 AAATTCAACTAAAAATCAAAATTTAGT-GAA
1 AAATTCAACTAAAAATCAAAATTCAGTAGAA
7491 AAATTCAA
1 AAATTCAA
7499 TCAAATAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
30 10 0.30
31 23 0.70
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.28
Consensus pattern (31 bp):
AAATTCAACTAAAAATCAAAATTCAGTAGAA
Found at i:7996 original size:2 final size:2
Alignment explanation
Indices: 7989--8020 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7979 ATAGCTGTTA
7989 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8021 ATATATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:9053 original size:50 final size:50
Alignment explanation
Indices: 8994--9178 Score: 246
Period size: 50 Copynumber: 3.7 Consensus size: 50
8984 GGAAAGTGCT
* *
8994 TTTGACAATAGAAAAAGGTGACCATAATTATTGACGATTCTTTACCAACC
1 TTTGACAATAGAGAAAGGTGACCATAATTGTTGACGATTCTTTACCAACC
* * * *
9044 TTTGACAATAGAGAGAGGTGGCCGTAATTGTTGACGATTCTTCACCAACC
1 TTTGACAATAGAGAAAGGTGACCATAATTGTTGACGATTCTTTACCAACC
* * * * *
9094 TTTGACAATAGAGAGAGGTGGCCATAATTGTTGATGATT-TTTCACTAACT
1 TTTGACAATAGAGAAAGGTGACCATAATTGTTGACGATTCTTT-ACCAACC
*
9144 TTTGACAATAGAGAAAGATGACCATAATTGTTGAC
1 TTTGACAATAGAGAAAGGTGACCATAATTGTTGAC
9179 TCTTAGTATA
Statistics
Matches: 119, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
49 2 0.02
50 117 0.98
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (50 bp):
TTTGACAATAGAGAAAGGTGACCATAATTGTTGACGATTCTTTACCAACC
Found at i:9362 original size:14 final size:15
Alignment explanation
Indices: 9336--9364 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9326 ATTGTGGGTG
9336 CTTATTCTTCATTTT
1 CTTATTCTTCATTTT
9351 CTTATT-TTCATTTT
1 CTTATTCTTCATTTT
9365 AGCTGTGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (15 bp):
CTTATTCTTCATTTT
Found at i:13615 original size:50 final size:50
Alignment explanation
Indices: 13558--13794 Score: 384
Period size: 50 Copynumber: 4.7 Consensus size: 50
13548 GGTGGAAAGT
* *
13558 ACCTTTGAGAATAGAGAGAGGTGGTCATAATTGTTGACGATTCTTCACCA
1 ACCTTTGACAATAGAGAGAGGTGGCCATAATTGTTGACGATTCTTCACCA
13608 ACCTTTGACAATAGAGAGAGGTGGCCATAATTGTTGACGATTCTTCACCA
1 ACCTTTGACAATAGAGAGAGGTGGCCATAATTGTTGACGATTCTTCACCA
* **
13658 ACCTTTGACAATAGAGAGAAGTGGTTATAATTGTTGACGATTCTTCACCA
1 ACCTTTGACAATAGAGAGAGGTGGCCATAATTGTTGACGATTCTTCACCA
* * * *
13708 ACTTTTGACGATAGAGAGATGTGGCTATAATTGTTGACGATTCTTCACCA
1 ACCTTTGACAATAGAGAGAGGTGGCCATAATTGTTGACGATTCTTCACCA
*
13758 ACCTTTGACAATAGAGAAAGGTGGCCATAATTGTTGA
1 ACCTTTGACAATAGAGAGAGGTGGCCATAATTGTTGA
13795 TTCTAAGTAT
Statistics
Matches: 173, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 173 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (50 bp):
ACCTTTGACAATAGAGAGAGGTGGCCATAATTGTTGACGATTCTTCACCA
Found at i:13813 original size:9 final size:9
Alignment explanation
Indices: 13799--13833 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
13789 TGTTGATTCT
13799 AAGTATATC
1 AAGTATATC
13808 AAGTATATTC
1 AAGTATA-TC
13818 TAAGTATATC
1 -AAGTATATC
13828 AAGTAT
1 AAGTAT
13834 GGCTATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 13 0.54
10 4 0.17
11 7 0.29
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (9 bp):
AAGTATATC
Found at i:13819 original size:20 final size:20
Alignment explanation
Indices: 13794--13833 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
13784 ATAATTGTTG
13794 ATTCTAAGTATATCAAGTAT
1 ATTCTAAGTATATCAAGTAT
13814 ATTCTAAGTATATCAAGTAT
1 ATTCTAAGTATATCAAGTAT
13834 GGCTATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (20 bp):
ATTCTAAGTATATCAAGTAT
Found at i:13824 original size:11 final size:11
Alignment explanation
Indices: 13794--13826 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
13784 ATAATTGTTG
13794 ATTCTAAGTAT
1 ATTCTAAGTAT
13805 A-TC-AAGTAT
1 ATTCTAAGTAT
13814 ATTCTAAGTAT
1 ATTCTAAGTAT
13825 AT
1 AT
13827 CAAGTATGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 7 0.35
10 4 0.20
11 9 0.45
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42
Consensus pattern (11 bp):
ATTCTAAGTAT
Found at i:16500 original size:17 final size:18
Alignment explanation
Indices: 16468--16501 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16458 TATTTTAATT
16468 ATATTATTTAAAATATAA
1 ATATTATTTAAAATATAA
*
16486 ATATT-TTTAATATATA
1 ATATTATTTAAAATATA
16502 TTTAATAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATTATTTAAAATATAA
Found at i:21946 original size:3 final size:3
Alignment explanation
Indices: 21938--21972 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
21928 CTAGAAGTAT
21938 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
21973 GTTGTTGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:22360 original size:12 final size:14
Alignment explanation
Indices: 22350--22512 Score: 71
Period size: 15 Copynumber: 11.5 Consensus size: 14
22340 CTAATAATTT
22350 TAAATATAATTATA
1 TAAATATAATTATA
*
22364 TAAATATAATATGTA
1 TAAATATAAT-TATA
22379 TAAATAT--TTAATA
1 TAAATATAATT-ATA
22392 TAAGATATGATATTAT-
1 TAA-ATAT-A-ATTATA
22408 TAAA-AT--TTATA
1 TAAATATAATTATA
22419 T-AATATAATTAT-
1 TAAATATAATTATA
22431 TAATATATTAAATGTTATA
1 TAA-ATA-T-AA--TTATA
* *
22450 TAAATATAAAATATTT
1 TAAATAT-AATTA-TA
22466 TAAATATAATTATA
1 TAAATATAATTATA
* *
22480 -ATATGATAAAATATA
1 TAAAT-AT-AATTATA
22495 TAAATA-AA--ATA
1 TAAATATAATTATA
22506 TAAATAT
1 TAAATAT
22513 GTAAATTATT
Statistics
Matches: 117, Mismatches: 9, Indels: 48
0.67 0.05 0.28
Matches are distributed among these distances:
10 6 0.05
11 12 0.10
12 2 0.02
13 16 0.14
14 22 0.19
15 25 0.21
16 16 0.14
17 6 0.05
18 9 0.08
19 3 0.03
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
TAAATATAATTATA
Found at i:22382 original size:29 final size:28
Alignment explanation
Indices: 22335--22512 Score: 90
Period size: 29 Copynumber: 6.2 Consensus size: 28
22325 ATATATAAGG
* *
22335 TAAATCTAATAATTTTAAATATAATTATA
1 TAAATATAAT-ATTATAAATATAATTATA
22364 TAAATATAATATGTATAAATAT--TTAATA
1 TAAATATAATAT-TATAAATATAATT-ATA
*
22392 TAAGATATGATATTATTAAA-AT--TTATA
1 TAA-ATATAATATTA-TAAATATAATTATA
*
22419 T-AATATAATTATTA-ATATATTAAATGTTATA
1 TAAATATAA-TATTATAAATA-T-AA--TTATA
*
22450 TAAATATAAAATATTTTAAATATAATTATA
1 TAAATAT--AATATTATAAATATAATTATA
* *
22480 -ATATGATAAAATATATAAATA-AA--ATA
1 TAAAT-ATAATAT-TATAAATATAATTATA
22506 TAAATAT
1 TAAATAT
22513 GTAAATTATT
Statistics
Matches: 119, Mismatches: 11, Indels: 41
0.70 0.06 0.24
Matches are distributed among these distances:
24 2 0.02
25 6 0.05
26 12 0.10
27 9 0.08
28 20 0.17
29 39 0.33
30 7 0.06
31 6 0.05
32 7 0.06
33 5 0.04
34 6 0.05
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.43
Consensus pattern (28 bp):
TAAATATAATATTATAAATATAATTATA
Found at i:22392 original size:17 final size:15
Alignment explanation
Indices: 22350--22385 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
22340 CTAATAATTT
*
22350 TAAATATAAT-TATA
1 TAAATATAATATGTA
22364 TAAATATAATATGTA
1 TAAATATAATATGTA
22379 TAAATAT
1 TAAATAT
22386 TTAATATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
TAAATATAATATGTA
Found at i:22462 original size:27 final size:30
Alignment explanation
Indices: 22432--22517 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 30
22422 TATAATTATT
* *
22432 AATATATTAAATGTTA-TATAA-AT-ATAA
1 AATATATTAAATATAATTATAATATGATAA
*
22459 AATATTTTAAATATAATTATAATATGATAA
1 AATATATTAAATATAATTATAATATGATAA
*
22489 AATATA-TAAATA-AAATATAAATATG-TAA
1 AATATATTAAATATAATTAT-AATATGATAA
22517 A
1 A
22518 TTATTATATT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
27 13 0.26
28 14 0.28
29 14 0.28
30 9 0.18
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (30 bp):
AATATATTAAATATAATTATAATATGATAA
Found at i:22513 original size:29 final size:30
Alignment explanation
Indices: 22448--22525 Score: 85
Period size: 29 Copynumber: 2.7 Consensus size: 30
22438 TTAAATGTTA
* *
22448 TATAA-AT-ATAAAATATTTTAAATATAAT
1 TATAATATGATAAAATATTATAAATAAAAT
22476 TATAATATGATAAAATA-TATAAATAAAA-
1 TATAATATGATAAAATATTATAAATAAAAT
*
22504 TATAAATATG-TAAATTATTATA
1 TAT-AATATGATAAAATATTATA
22526 TTTAATGCCA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
28 14 0.33
29 21 0.49
30 8 0.19
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.40
Consensus pattern (30 bp):
TATAATATGATAAAATATTATAAATAAAAT
Found at i:22518 original size:48 final size:47
Alignment explanation
Indices: 22420--22525 Score: 112
Period size: 48 Copynumber: 2.3 Consensus size: 47
22410 AAATTTATAT
* * * *
22420 AATATAATTATTAATATATTAAATGTTATATAAATATAAAATATTTTA
1 AATATAATTA-TAATATATAAAATATTAAATAAATATAAAATATTGTA
22468 AATATAATTATAATATGATAAAATATATAAATAAA-ATATAAATA-TGTA
1 AATATAATTATAATAT-ATAAAATAT-TAAATAAATATA-AAATATTGTA
22516 AAT-T-ATTATA
1 AATATAATTATA
22526 TTTAATGCCA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
46 6 0.12
47 7 0.14
48 26 0.51
49 12 0.24
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (47 bp):
AATATAATTATAATATATAAAATATTAAATAAATATAAAATATTGTA
Found at i:22871 original size:17 final size:16
Alignment explanation
Indices: 22849--22885 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
22839 TTTTACCGTT
22849 AAAATTTTAAAAATTTA
1 AAAATTTTAAAAA-TTA
*
22866 AAAATTTTTAAAATTA
1 AAAATTTTAAAAATTA
22882 AAAA
1 AAAA
22886 CTAACTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATTTTAAAAATTA
Found at i:25566 original size:17 final size:17
Alignment explanation
Indices: 25525--25566 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
25515 TATTTTTTTT
*
25525 AAAATATTTTTCAAATA
1 AAAATTTTTTTCAAATA
* *
25542 TAATTTTTTTTCAAATA
1 AAAATTTTTTTCAAATA
25559 AAAATTTT
1 AAAATTTT
25567 AAAATAATGA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAATTTTTTTCAAATA
Found at i:27808 original size:22 final size:24
Alignment explanation
Indices: 27773--27829 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 24
27763 AAATAAAATT
27773 ATATATATTAAAATTTAAATTTTT-A
1 ATATA-ATT-AAATTTAAATTTTTAA
* *
27798 AT-TAATTAAATTTTATTTTTTAA
1 ATATAATTAAATTTAAATTTTTAA
27821 ATATAATTA
1 ATATAATTA
27830 TATAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 12 0.43
23 6 0.21
24 8 0.29
25 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATAATTAAATTTAAATTTTTAA
Found at i:27812 original size:23 final size:24
Alignment explanation
Indices: 27773--27829 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
27763 AAATAAAATT
27773 ATATATATTAAAATTTAAATTTTT-A
1 ATATA-ATTAAAATTT-AATTTTTAA
* *
27798 AT-TAATTAAATTTTATTTTTTAA
1 ATATAATTAAAATTTAATTTTTAA
27821 ATATAATTA
1 ATATAATTA
27830 TATAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 6 0.21
23 12 0.43
24 8 0.29
25 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATAATTAAAATTTAATTTTTAA
Found at i:29294 original size:15 final size:16
Alignment explanation
Indices: 29274--29303 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
29264 TAATTTTAAA
29274 TAAAATAT-ATATAAT
1 TAAAATATAATATAAT
29289 TAAAATATAATATAA
1 TAAAATATAATATAA
29304 AATAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAAATATAATATAAT
Found at i:29322 original size:17 final size:17
Alignment explanation
Indices: 29271--29321 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 17
29261 CGATAATTTT
29271 AAATAAAATAT-ATAT-
1 AAATAAAATATAATATA
*
29286 AATTAAAATATAATATA
1 AAATAAAATATAATATA
*
29303 AAATAAAATA-AATTTA
1 AAATAAAATATAATATA
29319 AAA
1 AAA
29322 AGAATAGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 10 0.32
16 12 0.39
17 9 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAAAATATAATATA
Found at i:29810 original size:18 final size:20
Alignment explanation
Indices: 29775--29858 Score: 60
Period size: 20 Copynumber: 4.6 Consensus size: 20
29765 ATATAAACAC
*
29775 TATATAAATATATTATAATT
1 TATATAAATATATAATAATT
29795 TATATAAA-ATA-AATAA-T
1 TATATAAATATATAATAATT
*
29812 TA-AT--ATAT-TAA-AA-A
1 TATATAAATATATAATAATT
*
29826 TATATAAATATATAATATTT
1 TATATAAATATATAATAATT
*
29846 TAAATATAATATA
1 TATATA-AATATA
29859 ATATAAATAC
Statistics
Matches: 50, Mismatches: 5, Indels: 17
0.69 0.07 0.24
Matches are distributed among these distances:
14 5 0.10
15 6 0.12
16 2 0.04
17 7 0.14
18 7 0.14
19 4 0.08
20 13 0.26
21 6 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TATATAAATATATAATAATT
Found at i:29841 original size:26 final size:25
Alignment explanation
Indices: 29802--29867 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
29792 ATTTATATAA
29802 AATAAATA-ATTAATATATTAAAAAT
1 AATAAATATA-TAATATATTAAAAAT
* *
29827 ATATAAATATATAATATTTTAAATAT
1 A-ATAAATATATAATATATTAAAAAT
29853 AATATAATATA-AATA
1 AATA-AATATATAATA
29868 CGTTAACCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 8 0.22
26 27 0.75
27 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
AATAAATATATAATATATTAAAAAT
Found at i:30144 original size:18 final size:18
Alignment explanation
Indices: 30111--30221 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 18
30101 AAAATAATTA
30111 AAATATAATATAAAATTTT
1 AAATATAATAT-AAATTTT
30130 AAATATAATATAAATATTTTT
1 AAATATAATAT-AA-A-TTTT
30151 AAAATTTATATAATATAAATTATT
1 --AA---ATATAATATAAATT-TT
*
30175 -AATAT-AT-TAAAATTT
1 AAATATAATATAAATTTT
30190 AAATAT-ATATAATATTTT
1 AAATATAATATAA-ATTTT
30208 AAATATAATTATAA
1 AAATATAA-TATAA
30222 TAAAATAAAA
Statistics
Matches: 77, Mismatches: 2, Indels: 25
0.74 0.02 0.24
Matches are distributed among these distances:
15 2 0.03
16 12 0.16
17 5 0.06
18 14 0.18
19 15 0.19
20 6 0.08
21 5 0.06
23 4 0.05
24 3 0.04
25 2 0.03
26 9 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATAATATAAATTTT
Found at i:30194 original size:16 final size:16
Alignment explanation
Indices: 30149--30214 Score: 55
Period size: 18 Copynumber: 4.0 Consensus size: 16
30139 ATAAATATTT
30149 TTAAAATTT--ATATA
1 TTAAAATTTAAATATA
* *
30163 ATATAAATTATTAATATA
1 TTA-AAATT-TAAATATA
30181 TTAAAATTTAAATATA
1 TTAAAATTTAAATATA
*
30197 TATAATATTTTAAATATA
1 T-TAA-AATTTAAATATA
30215 ATTATAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
14 2 0.05
15 5 0.12
16 9 0.21
17 8 0.19
18 18 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATTTAAATATA
Found at i:30221 original size:58 final size:62
Alignment explanation
Indices: 30112--30227 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 62
30102 AAATAATTAA
*
30112 AATATAATATAAAATTTTAAATATAATATAAATATTTTTAAAATTTATATAATATAAATTATT
1 AATATAATATAAAATTTTAAATATAATATAAATATTTTTAAAATATATATAATA-AAATTATT
30175 AATAT-AT-TAAAA-TTTAAATAT-ATAT-AATA-TTTT-AAATATAATTATAATAAAAT
1 AATATAATATAAAATTTTAAATATAATATAAATATTTTTAAAATAT-A-TATAATAAAAT
30228 AAAATAGATA
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
56 5 0.10
57 9 0.18
58 11 0.22
59 4 0.08
60 9 0.18
61 5 0.10
62 2 0.04
63 5 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (62 bp):
AATATAATATAAAATTTTAAATATAATATAAATATTTTTAAAATATATATAATAAAATTATT
Found at i:30224 original size:23 final size:24
Alignment explanation
Indices: 30162--30224 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
30152 AAATTTATAT
30162 AATATAAATTAT--TAATATATTAA
1 AATAT-AATTATAATAATATATTAA
* * *
30185 AATTTAAATATATATAATAT-TTTA
1 AATATAATTATA-ATAATATATTAA
30209 AATATAATTATAATAA
1 AATATAATTATAATAA
30225 AATAAAATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
22 5 0.16
23 8 0.25
24 13 0.41
25 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
AATATAATTATAATAATATATTAA
Found at i:33341 original size:26 final size:26
Alignment explanation
Indices: 33306--33371 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
33296 ATAAAATATT
33306 AATTTATAAAAATG-TATATAAATATAA
1 AATTTATAAAAATGAT-TAT-AATATAA
*
33333 AATTT-TAAATATGATTATAATATAA
1 AATTTATAAAAATGATTATAATATAA
**
33358 TTTTTAATAAAAAT
1 AATTT-ATAAAAAT
33372 TATGTTTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
25 10 0.31
26 10 0.31
27 12 0.38
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
AATTTATAAAAATGATTATAATATAA
Found at i:33447 original size:18 final size:17
Alignment explanation
Indices: 33416--33469 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
33406 ATTTTATCAC
33416 TAAAATAAAAAAAAATA
1 TAAAATAAAAAAAAATA
* *
33433 TAAAAGTAAATAAAAATG
1 TAAAA-TAAAAAAAAATA
*
33451 TAAGCAATAAAAATAAATA
1 TAA--AATAAAAAAAAATA
33470 AAAGAACCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 5 0.17
18 13 0.45
19 9 0.31
20 2 0.07
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (17 bp):
TAAAATAAAAAAAAATA
Found at i:36167 original size:17 final size:17
Alignment explanation
Indices: 36135--36187 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
36125 ATATGAAATT
*
36135 TTATTATAAAAAATTTAA
1 TTATT-TAATAAATTTAA
36153 TTATTTAATAAATTTAA
1 TTATTTAATAAATTTAA
* *
36170 ATATTCAATAAATATTAA
1 TTATTTAATAAAT-TTAA
36188 CATCTAATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
17 22 0.71
18 9 0.29
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TTATTTAATAAATTTAA
Found at i:36432 original size:13 final size:14
Alignment explanation
Indices: 36407--36438 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
36397 AGTCAATTTA
36407 ATTTA-GTTATATT
1 ATTTATGTTATATT
36420 ATTTATGTT-TATT
1 ATTTATGTTATATT
36433 ATTTAT
1 ATTTAT
36439 AATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 15 0.83
14 3 0.17
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (14 bp):
ATTTATGTTATATT
Found at i:36519 original size:37 final size:36
Alignment explanation
Indices: 36461--36530 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
36451 TTTTATAATA
*
36461 ATTTTTTATATTTTATAATTAAATTTAAATAAAAAT
1 ATTTTTTATATTTTAAAATTAAATTTAAATAAAAAT
* *
36497 ATTTTTTA-ATTATTAAATATTAATTTTAATTAAA
1 ATTTTTTATATT-TTAAA-ATTAAATTTAAATAAA
36531 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 3 0.10
36 12 0.41
37 14 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (36 bp):
ATTTTTTATATTTTAAAATTAAATTTAAATAAAAAT
Found at i:36584 original size:22 final size:21
Alignment explanation
Indices: 36559--36603 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
36549 AAATTTAATT
36559 TAAACAAATTAAACTTCTTAAA
1 TAAACAAATTAAA-TTCTTAAA
* * *
36581 TAAATAATTTAAATTCTTCAA
1 TAAACAAATTAAATTCTTAAA
36602 TA
1 TA
36604 CGTCTAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAACAAATTAAATTCTTAAA
Found at i:37726 original size:22 final size:20
Alignment explanation
Indices: 37698--37747 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
37688 TTTTGGTGTG
*
37698 TATTTGAAAAAAAAATTATAAT
1 TATTTGAAAAAAAAA-T-GAAT
* *
37720 TATTTGAGAAATAAATGAAT
1 TATTTGAAAAAAAAATGAAT
37740 TATTTGAA
1 TATTTGAA
37748 TTAAATAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 10 0.42
21 1 0.04
22 13 0.54
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (20 bp):
TATTTGAAAAAAAAATGAAT
Found at i:37758 original size:18 final size:19
Alignment explanation
Indices: 37717--37763 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
37707 AAAAAATTAT
*
37717 AATTATTTGAGAAATAAATG
1 AATTATTT-AGAAATAAATA
*
37737 AATTATTT-GAATTAAATA
1 AATTATTTAGAAATAAATA
37755 AATTATTTA
1 AATTATTTA
37764 AAGATGTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 16 0.67
20 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTTAGAAATAAATA
Found at i:39933 original size:22 final size:22
Alignment explanation
Indices: 39908--39979 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 22
39898 GATATGATAC
39908 AAAAAATAATATAATAATAATT
1 AAAAAATAATATAATAATAATT
* *
39930 AAAATATAATATAAATATATCATT
1 AAAAAATAATAT-AATA-ATAATT
*
39954 --AAAATAATATGATAAATAATT
1 AAAAAATAATATAAT-AATAATT
39975 AAAAA
1 AAAAA
39980 CGTGCTAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
21 7 0.17
22 21 0.52
23 7 0.17
24 5 0.12
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (22 bp):
AAAAAATAATATAATAATAATT
Found at i:40578 original size:19 final size:21
Alignment explanation
Indices: 40549--40591 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
40539 AAAAATTATC
40549 ATATATTTTATTTAT-TTTTT
1 ATATATTTTATTTATATTTTT
40569 ATAT-TTTTATTTATATTTTT
1 ATATATTTTATTTATATTTTT
40589 ATA
1 ATA
40592 AATATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
ATATATTTTATTTATATTTTT
Found at i:40583 original size:12 final size:12
Alignment explanation
Indices: 40552--40590 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
40542 AATTATCATA
40552 TATTT-TATTTAT
1 TATTTATATTT-T
*
40564 TTTTTATATTTT
1 TATTTATATTTT
40576 TATTTATATTTT
1 TATTTATATTTT
40588 TAT
1 TAT
40591 AAATATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TATTTATATTTT
Found at i:42370 original size:21 final size:20
Alignment explanation
Indices: 42332--42371 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
42322 AAGTTTTTTC
*
42332 ATTAATTTAAAATTTAAAAT
1 ATTAATTTAAAATATAAAAT
*
42352 ATTAATTTTATAATATAAAA
1 ATTAA-TTTAAAATATAAAA
42372 ATAAAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAATTTAAAATATAAAAT
Found at i:47072 original size:2 final size:2
Alignment explanation
Indices: 47065--47091 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
47055 CAACAAGCTT
47065 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
47092 GATAAATGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:47682 original size:23 final size:22
Alignment explanation
Indices: 47632--47715 Score: 68
Period size: 23 Copynumber: 3.9 Consensus size: 22
47622 TTAAAAAATT
**
47632 ATAAATTTAT-ATAAATA-TTA
1 ATAAATTTATAATTTATATTTA
*
47652 ATATATTTAATAATTTATATTTA
1 ATAAATTT-ATAATTTATATTTA
47675 ATAAATTT-TAATTTATTTATTTA
1 ATAAATTTATAATTTA--TATTTA
* *
47698 TTAAAATTAT-ATTTATAT
1 ATAAATTTATAATTTATAT
47716 AATTTTTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
20 7 0.13
21 12 0.23
22 5 0.10
23 27 0.52
24 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATAAATTTATAATTTATATTTA
Found at i:47684 original size:16 final size:16
Alignment explanation
Indices: 47619--47689 Score: 58
Period size: 16 Copynumber: 4.4 Consensus size: 16
47609 TTTTATATAT
* *
47619 TATTTAAAAAATTATA
1 TATTTAATAAATTTTA
*
47635 AATTTATATAAATATTAATA
1 TATTTA-ATAAAT-TT--TA
47655 TATTTAAT-AA-TTTA
1 TATTTAATAAATTTTA
47669 TATTTAATAAATTTTA
1 TATTTAATAAATTTTA
47685 -ATTTA
1 TATTTA
47690 TTTATTTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
14 10 0.22
15 7 0.16
16 11 0.24
17 5 0.11
18 3 0.07
19 2 0.04
20 7 0.16
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATTTAATAAATTTTA
Found at i:47762 original size:14 final size:14
Alignment explanation
Indices: 47653--47763 Score: 53
Period size: 14 Copynumber: 8.3 Consensus size: 14
47643 TAAATATTAA
47653 TATATTTA-ATAATT
1 TATATTTATATAA-T
47667 TATATTTA-ATAA-
1 TATATTTATATAAT
*
47679 -AT-TTTA-ATTTAT
1 TATATTTATA-TAAT
*
47691 T-TATTTATTAAAAT
1 TATATTTA-TATAAT
47705 TATATTTATATAA-
1 TATATTTATATAAT
47718 T-T-TTTATATTATAT
1 TATATTTATA-TA-AT
* * **
47732 TTTAATTATATTTT
1 TATATTTATATAAT
47746 TATATTTATATAAT
1 TATATTTATATAAT
47760 TATA
1 TATA
47764 CGATGTTTAA
Statistics
Matches: 74, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
10 5 0.07
11 10 0.14
12 4 0.05
13 6 0.08
14 35 0.47
15 9 0.12
16 5 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATATTTATATAAT
Found at i:48503 original size:31 final size:32
Alignment explanation
Indices: 48463--48532 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
48453 CTTCAATTTT
* *
48463 ATAAAAATTTTAACT-TATAA-TATTAAATGA
1 ATAAAAAATTTAAATATATAATTATTAAATGA
*
48493 ATAAAAAATTTAAATATTTAATTATTAAATGA
1 ATAAAAAATTTAAATATATAATTATTAAATGA
48525 ATAAAAAA
1 ATAAAAAA
48533 GAATACTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 13 0.37
31 4 0.11
32 18 0.51
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (32 bp):
ATAAAAAATTTAAATATATAATTATTAAATGA
Found at i:49396 original size:20 final size:20
Alignment explanation
Indices: 49355--49398 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
49345 ATTTTTTTTG
*
49355 TAATATATTAATTTTTAAAT
1 TAATATATTAATTTTGAAAT
*
49375 TAATATTATTAA-TTTGATAT
1 TAATA-TATTAATTTTGAAAT
49395 TAAT
1 TAAT
49399 TTGATTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATATATTAATTTTGAAAT
Found at i:49409 original size:12 final size:12
Alignment explanation
Indices: 49379--49409 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
49369 TTAAATTAAT
49379 ATTATTAATTTG
1 ATTATTAATTTG
49391 A-TATTAATTTG
1 ATTATTAATTTG
49402 ATTATTAA
1 ATTATTAA
49410 ATAATTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (12 bp):
ATTATTAATTTG
Found at i:49593 original size:18 final size:18
Alignment explanation
Indices: 49566--49615 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
49556 TATTTGATAA
49566 AATAAA-AAAATTTATTT
1 AATAAATAAAATTTATTT
*
49583 -ATGTAATAAAATTTATTT
1 AAT-AAATAAAATTTATTT
49601 AATAAATAAAATTTA
1 AATAAATAAAATTTA
49616 AATATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 2 0.07
17 2 0.07
18 22 0.79
19 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
AATAAATAAAATTTATTT
Found at i:49624 original size:18 final size:18
Alignment explanation
Indices: 49587--49631 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
49577 TTATTTATGT
**
49587 AATAAAATTTATTTAATA
1 AATAAAATTTAAATAATA
*
49605 AATAAAATTTAAATATTA
1 AATAAAATTTAAATAATA
*
49623 AATTAAATT
1 AATAAAATT
49632 ATAATTACTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AATAAAATTTAAATAATA
Found at i:49886 original size:16 final size:17
Alignment explanation
Indices: 49851--49889 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
49841 GATATTAAAA
*
49851 AATTATTAAATTTTAATT
1 AATT-TTAAATTTAAATT
49869 AATTTTAAA-TTAAATT
1 AATTTTAAATTTAAATT
49885 AATTT
1 AATTT
49890 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 5 0.25
18 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATTTTAAATTTAAATT
Found at i:50359 original size:28 final size:28
Alignment explanation
Indices: 50326--50381 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
50316 TTAGTATTTA
*
50326 ATTTTA-TAAATTTTAATATATTTAAAAT
1 ATTTTATTAAATATTAATA-ATTTAAAAT
*
50354 ATTTTATTTAATATTAATAATTTAAAAT
1 ATTTTATTAAATATTAATAATTTAAAAT
50382 TTTAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
ATTTTATTAAATATTAATAATTTAAAAT
Found at i:51026 original size:20 final size:20
Alignment explanation
Indices: 51002--51054 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
50992 TAATTTTTAA
51002 AAATTTAAATTAAACATAAT
1 AAATTTAAATTAAACATAAT
* ** *
51022 TAATTTAAATTAAATTTTAT
1 AAATTTAAATTAAACATAAT
51042 AAATTTAAATTAA
1 AAATTTAAATTAA
51055 TTAAAATTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATTTAAATTAAACATAAT
Found at i:51068 original size:34 final size:34
Alignment explanation
Indices: 50974--51084 Score: 91
Period size: 40 Copynumber: 3.1 Consensus size: 34
50964 AAAAAATTAT
* *
50974 AATTAATATAAAATGTT-TTAATTTTTAAAAATTTA
1 AATTAAT-TAAAAT-TTATTAAATTTTATAAATTTA
*
51009 AATTAAACATAATTAATTTAAATTAAATTTTATAAATTTA
1 AATT-AA-TTAA--AATTT--ATTAAATTTTATAAATTTA
*
51049 AATTAATTAAAATTTATT-AATTTTTTAAAATTTA
1 AATTAATTAAAATTTATTAAATTTTAT-AAATTTA
51083 AA
1 AA
51085 ATTTAAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
33 7 0.11
34 12 0.19
35 4 0.06
36 10 0.16
37 2 0.03
38 6 0.10
39 2 0.03
40 20 0.32
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (34 bp):
AATTAATTAAAATTTATTAAATTTTATAAATTTA
Found at i:51171 original size:20 final size:19
Alignment explanation
Indices: 51136--51198 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 19
51126 TATATGTAAA
51136 TAAA-AATTAA-TTTAATT
1 TAAATAATTAATTTTAATT
51153 TAAATAATTATATTTTAATT
1 TAAATAATTA-ATTTTAATT
* *
51173 TATATATTTAATTATT-ATT
1 TAAATAATTAATT-TTAATT
51192 TAAATAA
1 TAAATAA
51199 AAACTAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
17 4 0.11
18 5 0.13
19 12 0.32
20 17 0.45
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TAAATAATTAATTTTAATT
Found at i:51187 original size:12 final size:12
Alignment explanation
Indices: 51157--51194 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
51147 TTAATTTAAA
51157 TAATTATAT-TT
1 TAATTATATATT
51168 TAATTTATATATT
1 TAA-TTATATATT
51181 TAATTAT-TATT
1 TAATTATATATT
51192 TAA
1 TAA
51195 ATAAAAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.40
12 10 0.40
13 5 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TAATTATATATT
Found at i:51501 original size:2 final size:2
Alignment explanation
Indices: 51494--51518 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51484 CTTTACTCTT
51494 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
51519 GTTGGAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:52010 original size:23 final size:23
Alignment explanation
Indices: 51965--52012 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
51955 TTTTTGAATA
**
51965 ATAAATAAATTTATCATTATATT
1 ATAAATAAATTTAAAATTATATT
51988 ATAAATAAATATTAAAATT-TATT
1 ATAAATAAAT-TTAAAATTATATT
52011 AT
1 AT
52013 TTTATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAAATAAATTTAAAATTATATT
Found at i:52031 original size:24 final size:24
Alignment explanation
Indices: 51998--52044 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
51988 ATAAATAAAT
*
51998 ATTAAAATTTATTATTTTATTTTA
1 ATTAAAATTTATTATTATATTTTA
*
52022 ATTAATATTTATTATTATATTTT
1 ATTAAAATTTATTATTATATTTT
52045 TAAATAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
ATTAAAATTTATTATTATATTTTA
Found at i:52445 original size:31 final size:28
Alignment explanation
Indices: 52409--52517 Score: 92
Period size: 31 Copynumber: 3.6 Consensus size: 28
52399 ATTTCCTAAT
** *
52409 AATATAATCGTAAATTTATATTAATTTCAAA
1 AATATAATAATAAATTTA-ATTAATAT--AA
52440 AATATAATAATAAATATTAATTAATATAA
1 AATATAATAATAAAT-TTAATTAATATAA
* *
52469 AATATAATAATAAATTTTAATATTTATATAT
1 AATATAATAATAAA-TTT-A-ATTAATATAA
* *
52500 AATATAGTGATAAATTTA
1 AATATAATAATAAATTTA
52518 CCTCTTAATC
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
29 19 0.28
30 5 0.07
31 40 0.60
32 3 0.04
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (28 bp):
AATATAATAATAAATTTAATTAATATAA
Found at i:52496 original size:29 final size:29
Alignment explanation
Indices: 52438--52516 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 29
52428 ATTAATTTCA
*
52438 AAAATATAATAATAAATATTAATTAATAT
1 AAAATATAATAATAAATTTTAATTAATAT
*
52467 AAAATATAATAATAAATTTTAATATTTATAT
1 AAAATATAATAATAAATTTT-A-ATTAATAT
* * *
52498 ATAATATAGTGATAAATTT
1 AAAATATAATAATAAATTT
52517 ACCTCTTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 19 0.44
30 1 0.02
31 23 0.53
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (29 bp):
AAAATATAATAATAAATTTTAATTAATAT
Found at i:53250 original size:21 final size:21
Alignment explanation
Indices: 53226--53266 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
53216 TTATTAAAAA
53226 ATATTTTA-AATTAATATTTAT
1 ATATTTTATAATTAA-ATTTAT
53247 ATATTTTATAATTAAATTTA
1 ATATTTTATAATTAAATTTA
53267 AATAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATATTTTATAATTAAATTTAT
Found at i:54323 original size:21 final size:23
Alignment explanation
Indices: 54288--54329 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
54278 TTATTATTTA
54288 AACAATTATTTAAATATCATTAT
1 AACAATTATTTAAATATCATTAT
*
54311 AACAA-TA-TTAAATCTCATT
1 AACAATTATTTAAATATCATT
54330 GTCTAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 2 0.11
23 5 0.28
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (23 bp):
AACAATTATTTAAATATCATTAT
Found at i:54735 original size:20 final size:21
Alignment explanation
Indices: 54712--54750 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
54702 TATGAAAATA
54712 TAAAAAAAT-AAAATAATATT
1 TAAAAAAATAAAAATAATATT
*
54732 TAAAAATATAAAAATAATA
1 TAAAAAAATAAAAATAATA
54751 AAATTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAAAAAATAAAAATAATATT
Found at i:54769 original size:16 final size:16
Alignment explanation
Indices: 54745--54780 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
54735 AAATATAAAA
54745 ATAATAAAATTATTTTTT
1 ATAA-AAAA-TATTTTTT
54763 ATAAAAAATATTTTTT
1 ATAAAAAATATTTTTT
54779 AT
1 AT
54781 TAATAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.56
17 4 0.22
18 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATAAAAAATATTTTTT
Found at i:55045 original size:39 final size:40
Alignment explanation
Indices: 54978--55059 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 40
54968 AGTATGAATA
* *
54978 AAAAATTATATTTTATTATAAATATAAT-ATTTAATAAAT
1 AAAAATTATATTTTATAATAAATATAATAATTAAATAAAT
*
55017 AAAAATT-TATTTTATAATTAAA-ATTAATAATTAAATAATT
1 AAAAATTATATTTTATAA-TAAATA-TAATAATTAAATAAAT
55057 AAA
1 AAA
55060 TAAGAAATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
38 10 0.27
39 15 0.41
40 12 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (40 bp):
AAAAATTATATTTTATAATAAATATAATAATTAAATAAAT
Found at i:63976 original size:15 final size:15
Alignment explanation
Indices: 63956--63988 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
63946 AAAATTATTA
*
63956 ATAAAAAATATTTTT
1 ATAAAAAATAATTTT
63971 ATAAAAAATAATTTT
1 ATAAAAAATAATTTT
63986 ATA
1 ATA
63989 TATTTATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAAAAAATAATTTT
Found at i:64018 original size:20 final size:20
Alignment explanation
Indices: 63993--64030 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
63983 TTTATATATT
63993 TATTATTTTATATTTTTAAA
1 TATTATTTTATATTTTTAAA
*
64013 TATTATTTTATTTTTTTA
1 TATTATTTTATATTTTTA
64031 TATTTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTATTTTATATTTTTAAA
Found at i:64438 original size:21 final size:23
Alignment explanation
Indices: 64414--64455 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
64404 ATTATTAGAC
64414 AATGAGATTT-AAT-ATTGTTAT
1 AATGAGATTTAAATAATTGTTAT
*
64435 AATGATATTTAAATAATTGTT
1 AATGAGATTTAAATAATTGTT
64456 TAAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 3 0.17
23 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (23 bp):
AATGAGATTTAAATAATTGTTAT
Done.