Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold941
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19675
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Found at i:470 original size:27 final size:27
Alignment explanation
Indices: 428--506 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
418 TGGCATTCCT
* *
428 TTTTAAGTCCATAACTCCATGGCAACC
1 TTTTAAGTCCACAACTCCGTGGCAACC
455 TTTTAAGTCCACAACTCCGTGGCAACC
1 TTTTAAGTCCACAACTCCGTGGCAACC
* *
482 TTATAAAGACCACAACTCCGTGGCA
1 TT-TTAAGTCCACAACTCCGTGGCA
507 GCCCTTTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 27 0.57
28 20 0.43
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCAACC
Found at i:500 original size:28 final size:27
Alignment explanation
Indices: 440--526 Score: 102
Period size: 28 Copynumber: 3.1 Consensus size: 27
430 TTAAGTCCAT
* * *
440 AACTCCATGGCAACCTTTTAAGTCCAC
1 AACTCCGTGGCAACCTTTAAAGACCAC
467 AACTCCGTGGCAACCTTATAAAGACCAC
1 AACTCCGTGGCAACCTT-TAAAGACCAC
*
495 AACTCCGTGGCAGCCCTTTTTAAAGACCAC
1 AACTCCGTGGCA-ACC--TTTAAAGACCAC
525 AA
1 AA
527 GTCAAAGGCA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 16 0.31
28 20 0.38
29 2 0.04
30 12 0.23
31 2 0.04
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (27 bp):
AACTCCGTGGCAACCTTTAAAGACCAC
Found at i:556 original size:28 final size:28
Alignment explanation
Indices: 463--982 Score: 586
Period size: 28 Copynumber: 18.6 Consensus size: 28
453 CCTTTTAAGT
* * * *
463 CCACAACTCCGTGGCAACCTTAT-AAAGA
1 CCACAAGTCAGTGGCATCCTT-TCAAAGC
* * * * *
491 CCACAACTCCGTGGCAGCCCTTTTTAAAGA
1 CCACAAGTCAGTGGCA-TCC-TTTCAAAGC
** *
521 CCACAAGTCAAAGGCATCCTTTGAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
549 CCACAAGTCAG-GGACA-CCTTTTCAAAGA
1 CCACAAGTCAGTGG-CATCC-TTTCAAAGC
* *
577 CCAAAAGT-AGTGGCACCCTTTCAAAG-
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
**
603 CCACAAGTTGGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
631 CCACAAATCAGTGGCATCCTTTCAAAAC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
659 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
687 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
715 CCACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
743 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * *
771 CCAC-AGTCAGTCGCACCCTTTGAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
798 TCACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
826 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
854 CCACAAGTTAGTGGCACCCTTTTAAAGG
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* **
882 CCACAAATCAGTGGTGTCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
910 CCACAAGTCAGTGACATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
938 CCACAAGTCAGTGGCA-CTCTTTCAAAGC
1 CCACAAGTCAGTGGCATC-CTTTCAAAGC
*
966 CCACAAGTTAGTGGCAT
1 CCACAAGTCAGTGGCAT
983 GTCAGTAGCA
Statistics
Matches: 422, Mismatches: 58, Indels: 23
0.84 0.12 0.05
Matches are distributed among these distances:
26 7 0.02
27 55 0.13
28 336 0.80
29 5 0.01
30 19 0.05
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (28 bp):
CCACAAGTCAGTGGCATCCTTTCAAAGC
Found at i:577 original size:56 final size:56
Alignment explanation
Indices: 394--6948 Score: 4574
Period size: 56 Copynumber: 117.4 Consensus size: 56
384 TAGTAGTGTA
* * * * ** * * *
394 ACCTTTTCAAAGTCCACGATTTAGTGGCATTCCTTTTTAAGTCCATAACTCCA-TGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGT-CAGTGGC
* * * * * * *
451 AACCTTTT--AAGTCCACAACTCCGTGGCAACCTTAT-AAAGACCACAACTCCGTGGC
1 -ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGC
* * ** *
506 AGCCCTTTTTAAAGACCACAAGTCAAAGGCATCCTTTGAAAGCCCACAAGTCAG-GGAC
1 A--CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG-C
* * * **
564 ACCTTTTCAAAGACCAAAAGT-AGTGGCACCCTTTCAAAG-CCACAAGTTGGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* *
618 ATCC-TTTCAAAGCCCACAAATCAGTGGCATCCTTTCAAAACCCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
674 ATCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* *
730 ATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC-AGTCAGTCGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
785 ACCCTTTGAAAGCTCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * *
841 ATCTTTTCAAAGCCCACAAGTTAGTGGCACCCTTTTAAAGGCCACAAATCAGTGGTG
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG-C
* * *
898 TCC-TTTCAAAGCCCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
*
953 A-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGT
1 ACCT-TTTCAAAGCCCAC-A---AGT--CA-GT--G--GCATCCTTTCAAAGCCCACAAGTCAGT
1017 GGC
54 GGC
* * * *
1020 ATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-ATCTTCAAAAGCTCAC-AGTTAGTAGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * * * *
1076 A-TTTTTCCAAAGCCCACAAGTCAATGGTA-CCTTTTAAAGCCCACAAGTTAGTGGC
1 ACCTTTT-CAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
1131 ATCC-TTTCAAAGCCCACAAGTTAATGGC-TTCTTTCAAAGCCCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* *
1186 ACC-TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * *
1241 ATCTCTTCAAAACAAACC-CACAGTCAATGGCATCTTTTCAAAGCCTACAAGTTAGTGGC
1 ACCTTTTCAAAGC---CCACA-AGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
1300 ACCCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAAGCCCACAAGTCAGTGAC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
*
1355 ATCTTTTCAAAG-CCACAAGTCAGTGGCA-CTCTTTCAAAGCCCA-AGTTAGTGGCATGTCAGTA
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACA---AGT--CA-GT--G--
1417 GC
55 GC
* *
1419 ACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * * *
1475 ATCTCTTCAAAAGCTCAAAAGTTAGTAGTGGCAT-TTTTCCAAAG-CC-CAAGTCAATGGT
1 ACCTTTTC-AAAGCCCACAAG-T--CAGTGGCATCCTTT-CAAAGCCCACAAGTCAGTGGC
* * *
1533 ACCCTTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAATGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
** * * *
1589 TTC-TTTCCAAG-CCA-AAGTCAGTGGCACCCTTTCAAAGCCCACAAGTAAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* *
1642 ATCC-TTTCAAAGCCCATAAGTTAGTGGCATCC-TTCAAAGCCCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
1697 ATCTTTTCAAAG-CCACACAGTCAGTAGCAT-CTTTCAAAGCCCACAA-TTAGTGGC
1 ACCTTTTCAAAGCCCACA-AGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
1751 ATCC-TTTCAAAGCCCACAAGTTAGTGG-ATCTTTTCGATA--CCAC-AGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGC
* * * *
1804 ACCCTTTCAAAGCCTACAAGTCAGGGGCATCCTTTCAAAGCCCACAAGTAAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
1860 ATCTCTTCAAAAGCCCACAAGTCA-TGGCAT-CTCTCAAAGCCTACAAGTCAGTGGC
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * *
1915 ATCATTTC-AAGCCCACAAGTCAGCGGCACCCTTTTAAGGCGCACAAGT-AGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * **
1969 ATCTTTTCAAATCACACAAGTTAGTGGCAT-CTATTCAAAAGAACACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * *
2026 ATCTCTTCAAAAGACCC-TAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
1 ACCTTTTC-AAAG-CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
2083 ATCTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
*
2139 ATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTT-AAAGCCCACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * *
2194 ATCC-TTTCAAAACTCACAAGTGAGTGGTATCCTTTCAAAGCCCACAGGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * ** * *
2250 ATCTTTTCAAAACAAACAAGTCAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAGTCGT
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * ** * * * *
2307 ATCTTTTCAAAGCCCATAA-AAAGTGGCA-CCCTTCAAAACCCAC-AGTTAGTGAC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
2360 ATCTTTTCAAA-CCCA-AAGTTAGTGGCAT-CTCTTCAAAAGACCACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * * * * * * *
2415 ATCTTTTCAAAAGACCATAAGTTAGTGGCAT-TTCTTCAAAAGACCACAGGTTAGTGGC
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* *
2473 ATCC--TTCAAAGCCCACAAGTTAGTGGCATCTTTTC-AAGCCCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * ***
2527 ACC-TTTCAAAG-CCACAAGTTAGTGGCATCCTTT-AAA-CCCATAAGTTAGTAAT
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
2579 ACCCTTTCAAGCAGCCCACAAGTCAATGGCAAT-CTCTTAAAAACCCACAA-T-AG-GGC
1 ACCTTTTCAA--AGCCCACAAGTCAGTGGC-ATCCT-TTCAAAGCCCACAAGTCAGTGGC
* * * * *
2635 ACCTTGTTAAAAGCCCAC-AGTCAGT-G-ACCCCTTCAAAGCCTACAAGTTAGTGGC
1 ACCTT-TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
2689 ATCC-TTTCAAAGCCCACAAGTCAGTGGCCAT-CTGTCAAAAGACC-CAAGTTATTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGG-CATCCTTTC-AAAGCCCACAAGTCAGTGGC
* * * * * * *
2745 ATCTCTTTAAAAGCCCACAAG-GA-AGGCAACTTTTCAAAACCCACAAGTCAGTGGC
1 ACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
2800 ATCC-TTTCAAAGCCCACAAGTTAGTGGCAATCCTATTTAAAGCCGCAC-AGT-A-TAAG-
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGC-ATCCT-TTCAAAGCC-CACAAGTCAGT-GGC
* * * * *
2856 ACCCTTTCAAAG-CCACAAGTTAAAGTGGTATCCTTT-AAAG-CCACCATTCAGTGGC
1 ACCTTTTCAAAGCCCACAAG-T-CAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
2911 ATCC-TTTCAAAGCCCACCAAGTCAGT-GC-TACCTTTTTTAAAGCCCATAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCA-CAAGTCAGTGGCAT-CC--TTTCAAAGCCCACAAGTCAGTGGC
* *
2969 ATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAGCTCACAAGTCAATGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * *
3024 ATCTCTTCAACAAACCCAC-AGTCAATGGCATCTTTTC-AAGCCTACAAGTCAGTGGC
1 ACCTTTTC-A-AAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
3080 ACCCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAAGCCCACAAGTCAGT-GA
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
3134 ATCTTTTCAAAGCCGCCACAAGTCAGTGGCA-CTTTTCAAAGCCCCCAAGTTAGTGGCTATGTCA
1 ACCTTTTCAAAG-C-CCACAAGTCAGTGGCATCCTTTCAAAGCCCAC-A---AGT--C-A-GT--
3198 GTAGC
54 G--GC
* *
3203 ACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGG-
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
3258 ATCTCTTCAAAAGCTCACAAGT-AGTGGC-T--TTTCCAAAGCCC-CAAGTCAATGGT
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAGTGGC
* * *
3311 ACCCTTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAATGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
** * *
3367 TTC-TTTCCAAGCCCAAAAGTCAGTGGCA-CCTTTCAAAG-CCACAAGT-AGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
3419 ATC-TTTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
3474 ATC-TTTCAAAGCCCACAAGTTCAGTAGCA-CTCTTTCAAAGCCCAC-AGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAG-TCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGC
* * * ** *
3529 ATCC-TTTCAAAGCCCACAAGTTAGTGGCATCTTTTCGAATACCACAAGTAAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
3585 ACCCTTTCAAAGCCTACAAAGTCAGGGGCATCCTTTCAAAG-CCAC-AGTAAGTGGC
1 ACCTTTTCAAAGCCCAC-AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
3640 ATCTCTTCAAAAGCCCCACAAGTCAGTGGCAT-CTCTTCAAAACGCCTACAAGTCAGTGGC
1 ACCTTTTC-AAAG-CCCACAAGTCAGTGGCATCCT-TTC-AAA-GCCCACAAGTCAGTGGC
* * * * * * * *
3700 ATCATTTCAAAGCCCACAAG-CAGCGGCACCCTTTTAAGGCGCA-AAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * **
3754 ATCTTTTCAAATCACACAAGTTAGTGG-AT-CTATTCAAAAGAACACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * ** *
3810 ATCTCTTCAAAAGACCC-TGAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGC
1 ACCTTTTC-AAAG-CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
3867 ATCTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CCAC-AGTTAGTGGCC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG-C
* *
3922 ATCC-TTTC-AAGCCCACAAGTCAGTGGCACCCTTT--AAGCCCACAAGTTAGT-GC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * *
3974 ATCC--TTCAAAACTCACAAGTGAG-GGTATCCTTTCAAAGCCCACAGGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * ** * *
4028 ATC-TTTCAAAACAAACAAGTCAGTAGTAGCATCGTTTCAAAAGCCCCACCAAGTCAGTCG-
1 ACCTTTTCAAAGCCCACAAGTCAGT-G--GCATCCTTTC-AAAG-CCCA-CAAGTCAGTGGC
* * * * *
4088 ATCTTTTCAAAGCCCATAAAG--AGTGGCACCCTTTCAAAACCCACAAGT-TGTTGG-
1 ACCTTTTCAAAGCCCA-CAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG-TGGC
* * * * * *
4142 ACATTTTCAAAACCCACAAGTTAGTGGCAT-CTCTTCAAAAGACTACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * * * *
4199 ATCTTTTTCAAATGACCACAAGTCAGTGGCAT-TTCTTCAAAAGACCACAGGTTAGGTTAGTGGC
1 A-CCTTTTCAAA-GCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACA----A-GTCAGTGGC
* *
4263 ATCC-TTTCAAAGCCCACAA-TTAGT-GCATCTTTTC-AAGCCCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * ***
4316 ACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAAG-CCATAAGTTAGTAAT
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGC
* * * *
4372 ACCCTTTT-AAAGCCCACAAGTCAATGGCATCTCTTTAAAAACCCACAAGTCAATGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
4429 ACCTTTTTAAAGCCCACAAGTCAG-GACACCCTTT-AAAGCCTACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* *
4483 ATCC-TTTCAAAGCCCA-AAGTCAGTGGCAT-CTGTTCAAAAGACCAC-AGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * * * * * * *
4538 ATCTCTTAAAAGCCCACAAGT-AATGGCA-ACTTTCAAAACCCATACGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * **
4592 ATCC-TTTCAAAGCCCACAAGTTAGT-GCATCCTTTTAAAGCCCATAAGTTAGT-AT
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
4646 ACCCTTTCAAAGCCTACAAGTTAGTGGTATCCTTTTAAAGCCCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * *
4702 ATCC-TTTCAAAGCCCACAAGTCAGTGGTA-CCTTTTTAATGCCCATACGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGC
*
4758 ATCC-TTTC-AAGCCCACAAGTCAGTGGCATCCTTTCAAAGCTCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
4813 ATCTATTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAGGTCAGTGAC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * *
4869 ACATTTTCCAAAGCCTACAAGTTAGTAGCATCCTTTC-AAGCCTACAAGTC-GTTGC
1 ACCTTTT-CAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * *
4924 ATCTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCCAAAGCCCACAAGTTAGTGGT
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAGTGGC
* * * *
4981 ACCCTTTT-AAATCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAATGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
** * * * *
5037 TTCTTTTCAAAGCCCACAAGTAAGTGGCACCCTTTGAAAG-CCACAAGTAAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
5092 ATCCTTTT-AAAG-CCACAAGTTAGTGGCATCCTTTCAAAACCCACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
5147 ATCTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTATGAAAGCCCACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGC
* ** * *
5203 ATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTTGAAGACCACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * *
5259 -CCCTTTCAAAG-CCACAAGTCAATGACATCTTTTCGAAA-ACCACAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGC
* * * *
5313 ACCCTTTCAAAGCCTAC-AGTTAGTGGCATCCTTTCAAAGCCTAC-AGTCAGT-GC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * *
5366 ATCTCTTCAAAGCACATAAGTTAGTGGCATCTTTTCAAAACCCACACAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACA-AGTCAGTGGC
* * * * * *
5423 ACCCTATT-AAAGCCCACAGGTCAGTGGCACCCTTT-TAAG-CCACACGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * **
5477 ATCC--TTGAAAACCCACAGGT-AGTGGCAT-CTCTTCAAAGAACAC-AGTTCAGTTGG-
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTCAAAGCCCACAAG-TCAG-TGGC
* * * * * * *
5531 ATCTCTTCAAAAGACCATAAGTCAGTGGTATCC-TTCAAAACCCACAAGTTAGTGGC
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
5587 ATCTTATCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGG-
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
5642 A-TTCTTTCAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCAC-AGTTAGTGGC
1 ACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
** * * * * * *
5697 ATCC-TTTCAAA-ATCACAAGT-TGTGGTATCATTAC-AAG-GCACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
5749 ATCTTTTCAAAG-CCACAAGTCAGTGGCAT-TTCTTCAAAAACCCATAAGTCAGT-GC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* * * * * * * *
5804 ATCTTTTCAAAGCCCATAAATGAATGGCACCCTTTTCAAAGCCCACAAGTTAGTGAC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGC
* * * * *
5861 ATCTTTTCAAA-ACCACAATTTAGTGGCAT-CTCTTCAAAAGACCACAAGTCAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGC
* ** * * * * * *
5917 ATCGCTTCAAAAGACCACAGGTTAGTGGCATCCTTTTAAAGCTCACAAGTTAGTGGC
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* *
5974 ATCTTTTCAAAAG--CACAAGTCAG-GGCA-CGCTTTCAAAGCCC-CAACAGTTAGTGGC
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCAC-A-AGTCAGTGGC
* * * *
6029 ATCC-TTTCAAAGCCCAATAAAGTGAATGGCATCCTTTCAAAGCCCATAAGTCTA-TGGC
1 A-CCTTTTCAAAGCCC-A-CAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTC-AGTGGC
* * * * *
6087 ATCTCTTCAAAAAG-CCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAGTGGC
1 ACCTTTTC--AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * *
6144 ACCCTTT-AAAACCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGAC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * *
6199 ATCTCTTCGAAAGACCAC-AGTTAGTGGCATCTCTTTAAAAGCCCACAAGT-AATGGT
1 ACCTTTTC-AAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGC
* * *
6255 AACTTTTCAAA-CCCACAAGTCAGTGGCA-CCCTTCAAAG--CACAA-TTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* ** * * * *
6306 ATCCTTTT-AAAGCCCACAAGT-TGTAACACCCTTTCAAAGCCCATAAGTTAGTGGT
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
6361 ATCC-TTT-AAAGCCCACAAGTCAGTGGCATCTTTTAAAAGGCCACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * * * *
6416 ACTTTTTCAATGCCCA-TAGTTAGTGGCATCC-TTGAAAGCCCATAAGTTAGTGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * * *
6470 ATCC-TTTCAAAGCTCACAAGTCAGTGGCATCTCTTCCAAAAGCCTAGAAGTCATTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTC-AAAGCCCACAAGTCAGTGGC
* * ** *
6528 A--TATTTCAAAGCCCATAAGTCAGTGGCA-CATTTTCAAAGCTTACAAGTTAGTGGC
1 ACCT-TTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGC
** * *
6583 ATCC-TTTCAAAGCCCACAAGTCTAGTGGCATCTCTTAAAAAG-ACACAAGTTAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTC-AGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGC
* * **
6640 ATTCCTTTT-AAAGCCCACACGTTAGTGGCATATTTTCAAAGCCCACAAGTCAGTGGC
1 A--CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
6697 ACC--TTCAAAG-CCATAAGTTAGTGGCATTCTTTTAAAGCCCACAAGTCA-TCGGC
1 ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGT-GGC
* * * *
6750 ATCC-TTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAATGGC
1 A-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
** ** * * * * *
6806 ATTACAATTTCAAAGCTAAACAAATCAATGGCACCCTTCCAAAGCCCATAAGTCAGTGGC
1 ---ACCTTTTCAAAGC-CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
6866 ACCCTTTT-AAAGCCTACAAGTCAGTTGGTACCCCTTCAAGAGCCCACAAGTCAGTGGC
1 A-CCTTTTCAAAGCCCACAAGTCAG-TGGCATCCTTTCAA-AGCCCACAAGTCAGTGGC
*
6924 ATCCCCTTTCAAAGCCACACAAGTC
1 A--CCTTTTCAAAGCC-CACAAGTC
6949 GATGGCTTTA
Statistics
Matches: 5250, Mismatches: 838, Indels: 815
0.76 0.12 0.12
Matches are distributed among these distances:
50 1 0.00
51 48 0.01
52 175 0.03
53 357 0.07
54 717 0.14
55 1210 0.23
56 1375 0.26
57 588 0.11
58 315 0.06
59 150 0.03
60 102 0.02
61 35 0.01
62 15 0.00
63 17 0.00
64 28 0.01
65 30 0.01
66 3 0.00
67 58 0.01
68 14 0.00
69 12 0.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (56 bp):
ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC
Found at i:999 original size:39 final size:39
Alignment explanation
Indices: 944--1021 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
934 AAGCCCACAA
* * *
944 GTCAGTGGCACTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
983 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1022 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:1025 original size:28 final size:28
Alignment explanation
Indices: 983--1409 Score: 430
Period size: 28 Copynumber: 15.4 Consensus size: 28
973 TTAGTGGCAT
* *
983 GTCAGTAGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
1011 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
1039 GTCAGTGGCAT-ATCTTCAAAAGCTCAC-A
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * *
1067 GTTAGTAGCAT-TTTTCCAAAGCCCACAA
1 GTCAGTGGCATCCTTT-CAAAGCCCACAA
* * *
1095 GTCAATGGTA-CCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1122 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
1150 GTTAATGGC-TTCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
1177 GTCAGTGGCA-CCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1204 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
1232 GTCAATGGCAT-CTCTTCAAAACAAACC-CACA
1 GTCAGTGGCATCCT-TTCAAAGC---CCACA-A
* * *
1263 GTCAATGGCATCTTTTCAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
1291 GTTAGTGGCACCCTTT-AAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
1318 GTTAGAGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
1346 GTCAGTGACATCTTTTCAAAG-CCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
1373 GTCAGTGGCA-CTCTTTCAAAG-CC-CAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
*
1399 GTTAGTGGCAT
1 GTCAGTGGCAT
1410 GTCAGTAGCA
Statistics
Matches: 337, Mismatches: 44, Indels: 37
0.81 0.11 0.09
Matches are distributed among these distances:
26 13 0.04
27 130 0.39
28 160 0.47
29 10 0.03
30 2 0.01
31 21 0.06
32 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (28 bp):
GTCAGTGGCATCCTTTCAAAGCCCACAA
Found at i:1269 original size:31 final size:33
Alignment explanation
Indices: 1220--1282 Score: 103
Period size: 31 Copynumber: 2.0 Consensus size: 33
1210 GGCATCCTTT
1220 CAAAGCCCACAAGTCAATGGCATCTCTTCAAAA
1 CAAAGCCCACAAGTCAATGGCATCTCTTCAAAA
*
1253 CAAA-CCCAC-AGTCAATGGCATCTTTTCAAA
1 CAAAGCCCACAAGTCAATGGCATCTCTTCAAA
1283 GCCTACAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 20 0.69
32 5 0.17
33 4 0.14
ACGTcount: A:0.38, C:0.30, G:0.11, T:0.21
Consensus pattern (33 bp):
CAAAGCCCACAAGTCAATGGCATCTCTTCAAAA
Found at i:1426 original size:37 final size:39
Alignment explanation
Indices: 1373--1448 Score: 111
Period size: 37 Copynumber: 2.0 Consensus size: 39
1363 AAAGCCACAA
* * *
1373 GTCAGTGGCACTCTTTCAAAG-CC-CAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1410 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1449 CCTTTCAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 19 0.56
38 2 0.06
39 13 0.38
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:3016 original size:27 final size:28
Alignment explanation
Indices: 1410--6948 Score: 3982
Period size: 28 Copynumber: 199.1 Consensus size: 28
1400 TTAGTGGCAT
* *
1410 GTCAGTAGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
1438 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
1466 GTCAATGGCAT-CTCTTCAAAAGCTCAAAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
1495 GTTAGTAGTGGCAT-TTTTCCAAAG-CC-CAA
1 G-T--CAGTGGCATCCTTT-CAAAGCCCACAA
* * * *
1524 GTCAATGGTACCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1552 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
1580 GTTAATGGC-TTCTTTCCAAG-CCA-AA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1605 GTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
1633 GTAAGTGGCATCCTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1661 GTTAGTGGCATCC-TTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1688 GTCAGTGGCATCTTTTCAAAG-CCACACA
1 GTCAGTGGCATCCTTTCAAAGCCCACA-A
*
1716 GTCAGTAGCAT-CTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1743 -TTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
1770 GTTAGTGG-ATCTTTTCGATA--CCAC-A
1 GTCAGTGGCATCCTTTC-AAAGCCCACAA
* * *
1795 GTTAGTGGCACCCTTTCAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1823 GTCAGGGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1851 GTAAGTGGCAT-CTCTTCAAAAGCCCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
1880 GTCA-TGGCAT-CTCTCAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
1906 GTCAGTGGCATCATTTC-AAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * * *
1933 GTCAGCGGCACCCTTTTAAGGCGCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
1961 GT-AGTGGCATCTTTTCAAATCACACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* **
1988 GTTAGTGGCAT-CTATTCAAAAGAACACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
*
2017 GTCAGTGGCAT-CTCTTCAAAAGACCC-TAA
1 GTCAGTGGCATCCT-TTC-AAAG-CCCACAA
2046 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
2074 GTCAGTGGCAT-CTTATCAAAGCCCACAA
1 GTCAGTGGCATCCTT-TCAAAGCCCACAA
*
2102 GTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
2130 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
2158 GTCAGTGGCATCCTTT-AAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
2185 GTTAGTGGCATCCTTTCAAAACTCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
2213 GTGAGTGGTATCCTTTCAAAGCCCACAG
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * **
2241 GTTAGTGGCATCTTTTCAAAACAAACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
2269 GTCAGTGGCAT-CTCTTCAAAAGCCCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * * *
2298 GTCAGTCGTATCTTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
** * *
2326 -AAAGTGGCA-CCCTTCAAAACCCAC-A
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
2351 GTTAGTGACATCTTTTCAAA-CCCA-AA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2377 GTTAGTGGCAT-CTCTTCAAAAGACCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * * *
2406 GTTAGTGGCATCTTTTCAAAAGACCATAA
1 GTCAGTGGCATCCTTTC-AAAGCCCACAA
* * * *
2435 GTTAGTGGCAT-TTCTTCAAAAGACCACAG
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
*
2464 GTTAGTGGCATCC-TTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2491 GTTAGTGGCATCTTTTC-AAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
2518 GTCAGTGGCA-CCTTTCAAAG-CCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2544 GTTAGTGGCATCCTTT-AAA-CCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *** *
2570 GTTAGTAATACCCTTTCAAGCAGCCCACAA
1 GTCAGTGGCATCCTTTCAA--AGCCCACAA
* * *
2600 GTCAATGGCAAT-CTCTTAAAAACCCACAA
1 GTCAGTGGC-ATCCT-TTCAAAGCCCACAA
*
2629 -T-AG-GGCA-CCTTGTTAAAAGCCCAC-A
1 GTCAGTGGCATCC-T-TTCAAAGCCCACAA
* * *
2654 GTCAGT-G-ACCCCTTCAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
2680 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2708 GTCAGTGGCCAT-CTGTCAAAAGACC-CAA
1 GTCAGTGG-CATCCTTTC-AAAGCCCACAA
* * *
2736 GTTATTGGCATCTCTTTAAAAGCCCACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
* * * * *
2765 G-GA-AGGCAACTTTTCAAAACCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
2791 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
2819 GTTAGTGGCAATCCTATTTAAAGCCGCAC-A
1 GTCAGTGGC-ATCCT-TTCAAAGCC-CACAA
* *
2849 GT-A-TAAG-ACCCTTTCAAAG-CCACAA
1 GTCAGT-GGCATCCTTTCAAAGCCCACAA
* * *
2874 GTTAAAGTGGTATCCTTT-AAAG-CCACCA
1 G-T-CAGTGGCATCCTTTCAAAGCCCACAA
*
2902 TTCAGTGGCATCCTTTCAAAGCCCACCAA
1 GTCAGTGGCATCCTTTCAAAGCCCA-CAA
* *
2931 GTCAGT-GC-TACCTTTTTTAAAGCCCATAA
1 GTCAGTGGCAT-CC--TTTCAAAGCCCACAA
*
2960 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
2988 GTCAGTGGCATCCTTTC-AAGCTCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
3015 GTCAATGGCAT-CTCTTCAACAAACCCAC-A
1 GTCAGTGGCATCCT-TTC-A-AAGCCCACAA
* * *
3044 GTCAATGGCATCTTTTC-AAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
3071 GTCAGTGGCACCCTTT-AAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
3098 GTTAGAGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
3126 GTCAGT-GAATCTTTTCAAAGCCGCCACAA
1 GTCAGTGGCATCCTTTCAAAG-C-CCACAA
* *
3155 GTCAGTGGCA-CTTTTCAAAGCCCCCAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * * *
3182 GTTAGTGGC-T-ATGTCAGTAGCACC-C-T
1 GTCAGTGGCATCCTTTCA-AAGC-CCACAA
* ** * *** ** * **
3208 TTCAAAGCCCA-CAAGTCAGTG-GCATCCT
1 GTCAGTG-GCATCCTTTCAAAGCCCA-CAA
* ** * *** * *
3236 TTCAAAGCCCA-CAAGTCAATGGATCTCTTCAAAA
1 GTCAGTG-GCATCCTTTCAA---AGC-C--CACAA
*** * *
3270 GCTCACAAGTAGTGGCTTTTCCAAAGCCC-CAA
1 G-TCAGTGGCA-T-CCTTT--CAAAGCCCACAA
* * * *
3302 GTCAATGGTACCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
3330 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * * *
3358 GTTAATGGC-TTCTTTCCAAGCCCAAAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
3385 GTCAGTGGCA-CCTTTCAAAG-CCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
3411 GT-AGTGGCAT-CTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
3437 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
3465 GTCAGTGGCAT-CTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
3492 GTTCAGTAGCA-CTCTTTCAAAGCCCAC-A
1 G-TCAGTGGCATC-CTTTCAAAGCCCACAA
*
3520 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * **
3548 GTTAGTGGCATCTTTTCGAATACCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
3576 GTAAGTGGCACCCTTTCAAAGCCTACAAA
1 GTCAGTGGCATCCTTTCAAAGCCCAC-AA
*
3605 GTCAGGGGCATCCTTTCAAAG-CCAC-A
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
3631 GTAAGTGGCAT-CTCTTCAAAAGCCCCACAA
1 GTCAGTGGCATCCT-TTC-AAAG-CCCACAA
*
3661 GTCAGTGGCAT-CTCTTCAAAACGCCTACAA
1 GTCAGTGGCATCCT-TTC-AAA-GCCCACAA
*
3691 GTCAGTGGCATCATTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * * *
3719 G-CAGCGGCACCCTTTTAAGGCGCA-AA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
3745 GTTAGTGGCATCTTTTCAAATCACACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* **
3773 GTTAGTGG-AT-CTATTCAAAAGAACACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
**
3801 GTCAGTGGCAT-CTCTTCAAAAGACCC-TGA
1 GTCAGTGGCATCCT-TTC-AAAG-CCCACAA
3830 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
3858 GTTAGTGGCAT-CTTATCAAAGCCCACAA
1 GTCAGTGGCATCCTT-TCAAAGCCCACAA
*
3886 GTCAGTGGCACCCTTTCAAAG-CCAC-A
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
3912 GTTAGTGGCCATCCTTTC-AAGCCCACAA
1 GTCAGTGG-CATCCTTTCAAAGCCCACAA
*
3940 GTCAGTGGCACCCTTT--AAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
3966 GTTAGT-GCATCC-TTCAAAACTCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
3992 GTGAG-GGTATCCTTTCAAAGCCCACAG
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * **
4019 GTTAGTGGCAT-CTTTCAAAACAAACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
4046 GTCAGTAGTAGCATCGTTTCAAAAGCCCCACCAA
1 GTCAGT-G--GCATCCTTTC-AAAG-CCCA-CAA
* * *
4080 GTCAGTCG-ATCTTTTCAAAGCCCATAAA
1 GTCAGTGGCATCCTTTCAAAGCCCA-CAA
* *
4108 G--AGTGGCACCCTTTCAAAACCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
4134 GT-TGTTGGACAT--TTTCAAAACCCACAA
1 GTCAG-TGG-CATCCTTTCAAAGCCCACAA
* * *
4161 GTTAGTGGCAT-CTCTTCAAAAGACTACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * *
4190 GTTAGTGGCATCTTTTTCAAATGACCACAA
1 GTCAGTGGCATC-CTTTCAAA-GCCCACAA
* *
4220 GTCAGTGGCAT-TTCTTCAAAAGACCACAGGTTA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACA----A
*
4253 GGTTAGTGGCATCCTTTCAAAGCCCACAA
1 -GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
4282 -TTAGT-GCATCTTTTC-AAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
4307 GTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
4335 GTTAGTGGCATCCTTTCAAAAG-CCATAA
1 GTCAGTGGCATCCTTTC-AAAGCCCACAA
* *** * *
4363 GTTAGTAATACCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
4391 GTCAATGGCATCTCTTTAAAAACCCACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
* *
4420 GTCAATGGCA-CCTTTTTAAAGCCCACAA
1 GTCAGTGGCATCC-TTTCAAAGCCCACAA
* * *
4448 GTCAG-GACACCCTTT-AAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
4474 GTTAGTGGCATCCTTTCAAAGCCCA-AA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
4501 GTCAGTGGCAT-CTGTTCAAAAGACCAC-A
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
4529 GTTAGTGGCAT-CTCTTAAAAGCCCACAA
1 GTCAGTGGCATCCT-TTCAAAGCCCACAA
* * * * *
4557 GT-AATGGCA-ACTTTCAAAACCCATAC
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
4583 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
4611 GTTAGT-GCATCCTTTTAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* ** * *
4638 GTTAGT-ATACCCTTTCAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
4665 GTTAGTGGTATCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
4693 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * * *
4721 GTCAGTGGTA-CCTTTTTAATGCCCATAC
1 GTCAGTGGCATCC-TTTCAAAGCCCACAA
*
4749 GTTAGTGGCATCCTTTC-AAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
4776 GTCAGTGGCATCCTTTCAAAGCTCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
4804 GTCAGTGGCAT-CTATTCAAAGCCCACAA
1 GTCAGTGGCATCCT-TTCAAAGCCCACAA
* *
4832 GTTAGTGGCATCCTTTCAAAGCCCACAG
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
4860 GTCAGTGACA-CATTTTCCAAAGCCTACAA
1 GTCAGTGGCATC-CTTT-CAAAGCCCACAA
* * *
4889 GTTAGTAGCATCCTTTC-AAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
4916 GTC-GTTGCAT-CTCTTCAAAAGCTCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
4944 GTTAGTGGCAT-TTTTCCAAAGCCCACAA
1 GTCAGTGGCATCCTTT-CAAAGCCCACAA
* * * * *
4972 GTTAGTGGTACCCTTTTAAATCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
5000 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
5028 GTTAATGGCTTCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
5056 GTAAGTGGCACCCTTTGAAAG-CCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5083 GTAAGTGGCATCCTTTTAAAG-CCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5110 GTTAGTGGCATCCTTTCAAAACCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5138 GTTAGTGGCATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
5166 GTCAGTAGCA-CTCTATGAAAGCCCACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
*
5194 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* ** *
5222 GTCAGTGGCATCTTTTTGAAGACCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5250 GTTAGTGGC-CCCTTTCAAAG-CCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
5276 GTCAATGACATCTTTTCGAAA-ACCACAA
1 GTCAGTGGCATCCTTTC-AAAGCCCACAA
* * *
5304 GTTAGTGGCACCCTTTCAAAGCCTAC-A
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5331 GTTAGTGGCATCCTTTCAAAGCCTAC-A
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5358 GTCAGT-GCAT-CTCTTCAAAGCACATAA
1 GTCAGTGGCATCCT-TTCAAAGCCCACAA
* * *
5385 GTTAGTGGCATCTTTTCAAAACCCACACA
1 GTCAGTGGCATCCTTTCAAAGCCCACA-A
* *
5414 GTCAGTGGCACCCTATT-AAAGCCCACAG
1 GTCAGTGGCATCCT-TTCAAAGCCCACAA
* * *
5442 GTCAGTGGCACCCTTT-TAAG-CCACAC
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
5468 GTTAGTGGCATCC-TTGAAAACCCACAG
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
**
5495 GT-AGTGGCAT-CTCTTCAAAGAACAC-A
1 GTCAGTGGCATCCT-TTCAAAGCCCACAA
* *
5521 GTTCAGTTGG-AT-CTCTTCAAAAGACCATAA
1 G-TCAG-TGGCATCCT-TTC-AAAGCCCACAA
* *
5551 GTCAGTGGTATCC-TTCAAAACCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5578 GTTAGTGGCAT-CTTATCAAAGCCCATAA
1 GTCAGTGGCATCCTT-TCAAAGCCCACAA
*
5606 GTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
5634 GTTAGTGG-ATTCTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5661 GTTAGTGGCACCCTTTCAAAGCCCAC-A
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* **
5688 GTTAGTGGCATCCTTTCAAA-ATCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * * *
5715 GT-TGTGGTATCATTAC-AAG-GCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5740 GTTAGTGGCATCTTTTCAAAG-CCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
5767 GTCAGTGGCAT-TTCTTCAAAAACCCATAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
5796 GTCAGT-GCATCTTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
5823 ATGAATGGCACCCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCC-TTTCAAAGCCCACAA
* * * *
5852 GTTAGTGACATCTTTTCAAA-ACCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
5879 TTTAGTGGCAT-CTCTTCAAAAGACCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
5908 GTCAGTGGCATCGC-TTCAAAAGACCACAG
1 GTCAGTGGCATC-CTTTC-AAAGCCCACAA
* * *
5937 GTTAGTGGCATCCTTTTAAAGCTCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
5965 GTTAGTGGCATCTTTTCAAAAG--CACAA
1 GTCAGTGGCATCCTTTC-AAAGCCCACAA
5992 GTCAG-GGCA-CGCTTTCAAAGCCC-CAACA
1 GTCAGTGGCATC-CTTTCAAAGCCCAC-A-A
* *
6020 GTTAGTGGCATCCTTTCAAAGCCCAATAAA
1 GTCAGTGGCATCCTTTCAAAGCCC-A-CAA
* * *
6050 GTGAATGGCATCCTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
6078 GTCTA-TGGCAT-CTCTTCAAAAAG-CCAAAA
1 GTC-AGTGGCATCCT-TTC--AAAGCCCACAA
* *
6107 GTCAATGGCATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
6135 GTCAGTGGCACCCTTT-AAAACCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
6162 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
6190 GTTAGTGACAT-CTCTTCGAAAGACCAC-A
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
6218 GTTAGTGGCATCTCTTTAAAAGCCCACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
* * * *
6247 GT-AATGGTAACTTTTCAAA-CCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
6273 GTCAGTGGCA-CCCTTCAAAG--CACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
6298 -TTAGTGGCATCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* ** * *
6325 GT-TGTAACACCCTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
6352 GTTAGTGGTATCCTTT-AAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
6379 GTCAGTGGCATCTTTTAAAAGGCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
6407 GTTAGTGGCA-CTTTTTCAATGCCCA-TA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
* * *
6434 GTTAGTGGCATCC-TTGAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
6461 GTTAGTGGCATCCTTTCAAAGCTCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
6489 GTCAGTGGCATCTCTTCCAAAAGCCTAGAA
1 GTCAGTGGCATC-CTTTC-AAAGCCCACAA
* * *
6519 GTCATTGGCAT-ATTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* **
6546 GTCAGTGGCA-CATTTTCAAAGCTTACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
*
6574 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
** *
6602 GTCTAGTGGCATCTCTTAAAAAG-ACACAA
1 GTC-AGTGGCATC-CTTTCAAAGCCCACAA
* * *
6631 GTTAGTGGCATTCCTTTTAAAGCCCACAC
1 GTCAGTGGCA-TCCTTTCAAAGCCCACAA
* **
6660 GTTAGTGGCATATTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
6688 GTCAGTGGCA-CC-TTCAAAG-CCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
6713 GTTAGTGGCATTCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
6741 GTCA-TCGGCATCCTTTCAAAGCCCACAA
1 GTCAGT-GGCATCCTTTCAAAGCCCACAA
* *
6769 GTTAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * **
6797 GTTAATGGCATTACAATTTCAAAGCTAAACAA
1 GTCAGTGGCA-T-C-CTTTCAAAGC-CCACAA
* * * * *
6829 ATCAATGGCACCCTTCCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
6857 GTCAGTGGCACCCTTTTAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
6885 GTCAGTTGGTACCCCTTCAAGAGCCCACAA
1 GTCAG-TGGCATCCTTTCAA-AGCCCACAA
6915 GTCAGTGGCATCCCCTTTCAAAGCCACACAA
1 GTCAGTGGCAT--CCTTTCAAAGCC-CACAA
6946 GTC
1 GTC
6949 GATGGCTTTA
Statistics
Matches: 4442, Mismatches: 745, Indels: 645
0.76 0.13 0.11
Matches are distributed among these distances:
24 13 0.00
25 120 0.03
26 453 0.10
27 1120 0.25
28 1735 0.39
29 656 0.15
30 213 0.05
31 55 0.01
32 27 0.01
33 13 0.00
34 23 0.01
35 8 0.00
36 2 0.00
37 1 0.00
39 3 0.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (28 bp):
GTCAGTGGCATCCTTTCAAAGCCCACAA
Found at i:3279 original size:96 final size:95
Alignment explanation
Indices: 3109--3286 Score: 245
Period size: 96 Copynumber: 1.9 Consensus size: 95
3099 TTAGAGGCAT
* * *
3109 CCTTTCAAAGCCCACAAGTCAGTGAATCTTTTCAAAGCCGCCACAAGTCAGTGGCACTTTTCAAA
1 CCTTTCAAAGCCCACAAGTCAGTGAATCCTTTCAAAGCCGCCACAAGTCAATGGCACTCTTCAAA
*
3174 GCCCCCAAGTTAGTGGCTATGTCAGTAGCAC
66 GCCCACAAG-TAGTGGCTATGTCAGTAGCAC
*
3205 CCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAG-C-CCACAAGTCAATGG-ATCTCTTCA
1 CCTTTCAAAGCCCACAAGTCAGT-GAATCCTTTCAAAGCCGCCACAAGTCAATGGCA-CTCTTC-
*
3267 AAAGCTCACAAGTAGTGGCT
63 AAAGCCCACAAGTAGTGGCT
3287 TTTCCAAAGC
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
94 1 0.01
95 26 0.36
96 34 0.47
97 12 0.16
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (95 bp):
CCTTTCAAAGCCCACAAGTCAGTGAATCCTTTCAAAGCCGCCACAAGTCAATGGCACTCTTCAAA
GCCCACAAGTAGTGGCTATGTCAGTAGCAC
Found at i:3330 original size:80 final size:82
Alignment explanation
Indices: 3206--6947 Score: 2074
Period size: 83 Copynumber: 44.9 Consensus size: 82
3196 CAGTAGCACC
*
3206 CTTT-CAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGG-ATCTCTTCAAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCATCTCTTC-AA
*
3269 AGCTCACAAG-TAGTGGC-T
63 AGCCCACAAGTTAGTGGCAT
* * *
3287 -TTTCCAAAGCCC-CAAGTCAATGGTACCCTTTTAAAGCCCACAAGTTAGTGGCATC-CTTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCAA
* *
3349 AGCCCACAAGTTAATGGCTT
63 AGCCCACAAGTTAGTGGCAT
*
3369 CTTTCC-AAGCCCAAAAGTCAGTGGCACCTTTCAAAG-CCACAAGTAGTGGCATCT-TTCAAAGC
1 CTTTCCAAAGCCCACAAGTCAGTGGCACCTTTCAAAGCCCACAAGTAGTGGCATCTCTTCAAAGC
*
3431 CCATAAGTTAGTGGCAT
66 CCACAAGTTAGTGGCAT
* *
3448 CCTTT-CAAAGCCCACAAGTCAGTGGCATCTTTCAAAGCCCACAAGTTCAGTAGCA-CTCTTTCA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCACCTTTCAAAGCCCACAAG-T-AGTGGCATCTC-TTCA
3511 AAGCCCAC-AGTTAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* * * ** *
3531 CCTTT-CAAAGCCCACAAGTTAGTGGCATCTTTTCGAATACCACAAGTAAGTGGCA-CCCTTTCA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCATCTC-TTCA
* * *
3594 AAGCCTACAAAGTCAGGGGCAT
62 AAGCCCAC-AAGTTAGTGGCAT
* *
3616 CCTTT-CAAAG-CCAC-AGTAAGTGGCATCTCTTCAAAAGCCCCACAAGTCAGTGGCATCTCTTC
1 -CTTTCCAAAGCCCACAAGTCAGTGGCACCT-TTC-AAAG-CCCACAAGT-AGTGGCATCTCTTC
* *
3678 AAAACGCCTACAAGTCAGTGGCAT
61 -AAA-GCCCACAAGTTAGTGGCAT
* * * * *
3702 CATTT-CAAAGCCCACAAG-CAGCGGCACCCTTTTAAGGCGCA-AAGTTAGTGGCATCTTTTCAA
1 C-TTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTCTTCAA
* *
3764 ATCACACAAGTTAGTGG-AT
63 AGCCCACAAGTTAGTGGCAT
* ** * **
3783 CTATTCAAAAGAACACAAGTCAGTGGCATCTCTTCAAAAGACCC-TGAGTCAGTGGCATC-CTTT
1 CT-TTCCAAAGCCCACAAGTCAGTGGCACCT-TTC-AAAG-CCCACAAGT-AGTGGCATCTC-TT
3846 CAAAGCCCACAAGTTAGTGGCAT
60 CAAAGCCCACAAGTTAGTGGCAT
3869 CTTAT-CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CCAC-AGTTAGTGGCCATC-CTTTC
1 CTT-TCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGG-CATCTC-TTC
* *
3930 -AAGCCCACAAGTCAGTGGCACC
61 AAAGCCCACAAGTTAGTGGCA-T
* * * *
3952 CTTT---AAGCCCACAAGTTAGT-GCATCC-TTCAAAACTCACAAGTGAG-GGTATC-CTTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCATCTC-TTCAA
*
4010 AGCCCACAGGTTAGTGGCAT
63 AGCCCACAAGTTAGTGGCAT
* ** * * *
4030 CTTT-CAAAACAAACAAGTCAGTAGTAGCATCGTTTCAAAAGCCCCACCAAGTCAGTCG-ATCTT
1 CTTTCCAAAGCCCACAAGTCAGT-G--GCA-CCTTTC-AAAG-CCCA-CAAGT-AGTGGCATCTC
* *
4093 TTCAAAGCCCATAAAG--AGTGGCACC
58 TTCAAAGCCCA-CAAGTTAGTGGCA-T
* * * *
4118 CTTT-CAAAACCCACAAGT-TGTTGG-ACATTTTCAAAACCCACAAGTTAGTGGCATCTCTTCAA
1 CTTTCCAAAGCCCACAAGTCAG-TGGCAC-CTTTCAAAGCCCACAAG-TAGTGGCATCTCTTC-A
* *
4180 AAGACTACAAGTTAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* * ** *
4201 CTTTTTCAAATGACCACAAGTCAGTGGCATTTCTTCAAAAGACCACAGGTTAGGTTAGTGGCATC
1 C-TTTCCAAA-GCCCACAAGTCAGTGGCACCT-TTC-AAAGCCCACA----A-G-TAGTGGCATC
4266 -CTTTCAAAGCCCACAA-TTAGT-GCAT
56 TC-TTCAAAGCCCACAAGTTAGTGGCAT
*
4291 CTTTTC-AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTC-A
* *** *
4354 AAG-CCATAAGTTAGTAATACC
62 AAGCCCACAAGTTAGTGGCA-T
* * * * * * * *
4375 CTTT-TAAAGCCCACAAGTCAATGGCATCTCTTTAAAAACCCACAAGTCAATGGCACCTTTTTAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-C-CTTTCAAAGCCCACAAGT-AGTGGCATCTCTTCAA
* * *
4439 AGCCCACAAGTCAG-GACACC
63 AGCCCACAAGTTAGTGGCA-T
* * *
4459 CTTT--AAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCA-AAGTCAGTGGCATCTGTTCAAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCATCTCTTC-AA
*
4521 AGACCAC-AGTTAGTGGCAT
63 AGCCCACAAGTTAGTGGCAT
* * * * * *
4540 CTCTT-AAAAGCCCACAAGT-AATGGCAACTTTCAAAACCCATACGTCAGTGGCATC-CTTTCAA
1 CT-TTCCAAAGCCCACAAGTCAGTGGCACCTTTCAAAGCCCACAAGT-AGTGGCATCTC-TTCAA
4602 AGCCCACAAGTTAGT-GCAT
63 AGCCCACAAGTTAGTGGCAT
* * * ** * * *
4621 CCTTT-TAAAGCCCATAAGTTAGT-ATACCCTTTCAAAGCCTACAAGTTAGTGGTATC-CTTTTA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCA
*
4683 AAGCCCACAAGTCAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* * * * *
4704 CCTTT-CAAAGCCCACAAGTCAGTGGTACCTTTTTAATGCCCATACGTTAGTGGCATC-CTTTC-
1 -CTTTCCAAAGCCCACAAGTCAGTGGCACC-TTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCA
*
4766 AAGCCCACAAGTCAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* *
4787 CCTTT-CAAAGCTCACAAGTCAGTGGCATCTATTCAAAGCCCACAAGTTAGTGGCATC-CTTTCA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCACCT-TTCAAAGCCCACAAG-TAGTGGCATCTC-TTCA
* * *
4850 AAGCCCACAGGTCAGTGACA-
62 AAGCCCACAAGTTAGTGGCAT
* * * * * *
4870 CATTTTCCAAAGCCTACAAGTTAGTAGCATCCTTTC-AAGCCTACAAGTCGTTGCATCTCTTCAA
1 C--TTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTAGTGGCATCTCTTC-A
*
4934 AAGCTCACAAGTTAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* * * * *
4955 TTTTCCAAAGCCCACAAGTTAGTGGTACCCTTTTAAATCCCACAAGTTAGTGGCATC-CTTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCAA
* *
5019 AGCCCACAAGTTAATGGCTT
63 AGCCCACAAGTTAGTGGCAT
* * * *
5039 CTTTTCAAAGCCCACAAGTAAGTGGCACCCTTTGAAAG-CCACAAGTAAGTGGCATC-CTTTTAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCATCTC-TTCAA
5102 AG-CCACAAGTTAGTGGCAT
63 AGCCCACAAGTTAGTGGCAT
* * * * *
5121 CCTTT-CAAAACCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTATGA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCATCTCT-TCA
5184 AAGCCCACAAGTTAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* ** * **
5205 CCTTT-CAAAGCCCACAAGTCAGTGGCATCTTTTTGAAGACCACAAGTTAGTGGCCCCT-TTCAA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTCTTCAA
* * *
5268 AG-CCACAAGTCAATGACAT
63 AGCCCACAAGTTAGTGGCAT
* * * *
5287 CTTTTCGAAA-ACCACAAGTTAGTGGCACCCTTTCAAAGCCTAC-AGTTAGTGGCATC-CTTTCA
1 C-TTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCA
* *
5349 AAGCCTAC-AGTCAGT-GCAT
62 AAGCCCACAAGTTAGTGGCAT
* * * * * * *
5368 CTCTT-CAAAGCACATAAGTTAGTGGCATCTTTTCAAAACCCACACAGTCAGTGGCA-CCCTATT
1 CT-TTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACA-AGT-AGTGGCATCTCT-TC
* * *
5431 AAAGCCCACAGGTCAGTGGCACC
61 AAAGCCCACAAGTTAGTGGCA-T
* * * * * *
5454 CTTT--TAAG-CCACACGTTAGTGGCATCC-TTGAAAACCCACAGGTAGTGGCATCTCTTCAAAG
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTAGTGGCATCTCTTCAAAG
**
5515 AACAC-AGTTCAGTTGG-AT
65 CCCACAAGTT-AG-TGGCAT
* * * * *
5533 CTCTTCAAAAGACCATAAGTCAGTGGTATCC-TTCAAAACCCACAAGTTAGTGGCATCT-TATCA
1 CT-TTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTCT-TCA
* * *
5596 AAGCCCATAAGTCAGTGGCACC
62 AAGCCCACAAGTTAGTGGCA-T
* * * *
5618 CTTT-CAAAGCCCACAAGTTAGTGG-ATTCTTTCAAAGCCCATAAGTTAGTGGCA-CCCTTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCAA
5680 AGCCCAC-AGTTAGTGGCAT
63 AGCCCACAAGTTAGTGGCAT
** * * * * * *
5699 CCTTT-CAAA-ATCACAAGT-TGTGGTATCATT-ACAAG-GCACAAGTTAGTGGCATCTTTTCAA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCACCTTTCA-AAGCCCACAAG-TAGTGGCATCTCTTCAA
*
5759 AG-CCACAAGTCAGTGGCAT
63 AGCCCACAAGTTAGTGGCAT
* * * * * * * * * *
5778 TTCTTCAAAAACCCATAAGTCAGT-GCATCTTTTCAAAGCCCATAAATGAATGGCACCCTTTTCA
1 CT-TTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCA-TCTCTTCA
*
5842 AAGCCCACAAGTTAGTGACAT
62 AAGCCCACAAGTTAGTGGCAT
* * * * * * *
5863 CTTTTCAAA-ACCACAATTTAGTGGCATCTCTTCAAAAGACCACAAGTCAGTGGCATCGCTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCACCT-TTC-AAAGCCCACAAGT-AGTGGCATCTCTTC-A
* *
5927 AAGACCACAGGTTAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* * * * *
5948 CCTTT-TAAAGCTCACAAGTTAGTGGCATCTTTTCAAAAG--CACAAGTCAG-GGCA-CGCTTTC
1 -CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTC-AAAGCCCACAAGT-AGTGGCATCTC-TTC
6008 AAAGCCC-CAACAGTTAGTGGCAT
61 AAAGCCCAC-A-AGTTAGTGGCAT
* * * *
6031 CCTTT-CAAAGCCCAATAAAGTGAATGGCATCCTTTCAAAGCCCATAAGTCTA-TGGCATCTCTT
1 -CTTTCCAAAGCCC-A-CAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG--TAGTGGCATCTCTT
* * *
6094 CAAAAAG-CCAAAAGTCAATGGCAT
60 C--AAAGCCCACAAGTTAGTGGCAT
* * *
6118 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTT-AAAACCTACAAGTTAGTGGCATC-CTTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCAA
*
6181 AGCCCACAAGTTAGTGACAT
63 AGCCCACAAGTTAGTGGCAT
* * * * * * * *
6201 CTCTTCGAAAGACCAC-AGTTAGTGGCATCTCTTTAAAAGCCCACAAGTAATGGTAACTTTTCAA
1 CT-TTCCAAAGCCCACAAGTCAGTGGCA-C-CTTTCAAAGCCCACAAGTAGTGGCATCTCTTCAA
* *
6265 A-CCCACAAGTCAGTGGCAC
63 AGCCCACAAGTTAGTGGCAT
* * * * ** *
6284 CCTT-CAAAG--CACAA-TTAGTGGCATCCTTTTAAAGCCCACAAGTTGTAACA-CCCTTTCAAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTAGTGGCATCTC-TTCAAA
* *
6344 GCCCATAAGTTAGTGGTAT
64 GCCCACAAGTTAGTGGCAT
* * * *
6363 CCTTT--AAAGCCCACAAGTCAGTGGCATCTTTTAAAAGGCCACAAGTTAGTGGCA-CTTTTTCA
1 -CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAG-TAGTGGCATC-TCTTCA
* *
6425 ATGCCCA-TAGTTAGTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* * * * *
6445 CCTT-GAAAGCCCATAAGTTAGTGGCATCCTTTCAAAGCTCACAAGTCAGTGGCATCTCTTCCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGTGGCATCTCTT-C-A
* * * *
6509 AAGCCTAGAAGTCATTGGCAT
62 AAGCCCACAAGTTAGTGGCAT
* * * **
6530 ATTT-CAAAGCCCATAAGTCAGTGGCACATTTTCAAAGCTTACAAGTTAGTGGCATC-CTTTCAA
1 CTTTCCAAAGCCCACAAGTCAGTGGCAC-CTTTCAAAGCCCACAAG-TAGTGGCATCTC-TTCAA
6593 AGCCCACAAGTCTAGTGGCAT
63 AGCCCACAAGT-TAGTGGCAT
** * * * * * *
6614 CTCTTAAAAAG-ACACAAGTTAGTGGCATTCCTTTTAAAGCCCACACGTTAGTGGCATATTTTCA
1 CT-TTCCAAAGCCCACAAGTCAGTGGCA--CCTTTCAAAGCCCACAAG-TAGTGGCATCTCTTCA
*
6678 AAGCCCACAAGTCAGTGGCA-
62 AAGCCCACAAGTTAGTGGCAT
* * * * *
6698 CCTT-CAAAG-CCATAAGTTAGTGGCATTCTTTTAAAGCCCACAAGTCA-TCGGCATC-CTTTCA
1 CTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGT-AGT-GGCATCTC-TTCA
*
6759 AAGCCCACAAGTTAGTGGCACC
62 AAGCCCACAAGTTAGTGGCA-T
* * * ** * * *
6781 CTTT-CAAAGCCCACAAGTTAATGGCATTACAATTTCAAAGCTAAACAAATCAATGGCA-CCCTT
1 CTTTCCAAAGCCCACAAGTCAGTGGC---AC-CTTTCAAAGC-CCACAAGT-AGTGGCATCTCTT
* * *
6844 CCAAAGCCCATAAGTCAGTGGCACC
60 -CAAAGCCCACAAGTTAGTGGCA-T
* * * * *
6869 CTTT-TAAAGCCTACAAGTCAGTTGGTACCCCTTCAAGAGCCCACAAGTCAGTGGCATCCCCTTT
1 CTTTCCAAAGCCCACAAGTCAG-TGGCA-CCTTTCAA-AGCCCACAAGT-AGTGGCAT-CTC-TT
6933 CAAAGCCACACAAGT
60 CAAAGCC-CACAAGT
6948 CGATGGCTTT
Statistics
Matches: 2929, Mismatches: 485, Indels: 486
0.75 0.12 0.12
Matches are distributed among these distances:
77 1 0.00
78 48 0.02
79 123 0.04
80 166 0.06
81 259 0.09
82 460 0.16
83 609 0.21
84 463 0.16
85 360 0.12
86 161 0.05
87 99 0.03
88 120 0.04
89 24 0.01
90 5 0.00
91 5 0.00
92 11 0.00
93 15 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (82 bp):
CTTTCCAAAGCCCACAAGTCAGTGGCACCTTTCAAAGCCCACAAGTAGTGGCATCTCTTCAAAGC
CCACAAGTTAGTGGCAT
Found at i:7126 original size:25 final size:25
Alignment explanation
Indices: 7098--7172 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
7088 ATTAGCTCAA
7098 TGTCGCTAGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
* * * *
7123 TGTC-C-A-CCTT-TATTAGCTCAA
1 TGTCGCTAGCCTTGAATCAGCACAT
*
7144 TGTCGCTGGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
7169 TGTC
1 TGTC
7173 CACTTTTCCC
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
21 11 0.30
22 5 0.14
23 1 0.03
24 5 0.14
25 15 0.41
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (25 bp):
TGTCGCTAGCCTTGAATCAGCACAT
Found at i:7147 original size:21 final size:22
Alignment explanation
Indices: 7080--7149 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
7070 CAGCATATTG
7080 GCACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
* * * *
7102 GCTAGCCTTGAATCAGCACATTGTC
1 GC-A-CCTT-TATTAGCTCAATGTC
7127 -CACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
7148 GC
1 GC
7150 TGGCCTTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 11 0.31
22 7 0.19
23 2 0.06
24 5 0.14
25 11 0.31
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (22 bp):
GCACCTTTATTAGCTCAATGTC
Found at i:7221 original size:50 final size:48
Alignment explanation
Indices: 7055--7268 Score: 258
Period size: 46 Copynumber: 4.5 Consensus size: 48
7045 AAGTCCGATA
* * * * *
7055 TCGCTGGCATTGAATCAGCATATTG-GCACCTTT--ATTAGCTCAATG
1 TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
* * *
7100 TCGCTAGCCTTGAATCAGCACATTGTCCACCTTT--ATTAGCTCAATG
1 TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
7146 TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
1 TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
* *
7194 TTCGGCTGGCCTTGAATCAGCACATTGTCAACTTTTCCCTTAGCTCGATG
1 -TC-GCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
* **
7244 TCGTTGGCCTTGAATTGGCACATTG
1 TCGCTGGCCTTGAATCAGCACATTG
7269 GCACTCTTCT
Statistics
Matches: 152, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
45 22 0.14
46 51 0.34
48 31 0.20
49 4 0.03
50 44 0.29
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.34
Consensus pattern (48 bp):
TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
Found at i:7999 original size:20 final size:19
Alignment explanation
Indices: 7974--8139 Score: 130
Period size: 20 Copynumber: 8.7 Consensus size: 19
7964 TTTTACCCAG
7974 ATGTATCGATACAGTTTTCA
1 ATGTATCGATACA-TTTTCA
* *
7994 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTCA
8014 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATT-TTCA
*
8034 ATGTATCGATACA--TTCT
1 ATGTATCGATACATTTTCA
* *** *
8051 AT-TTTTTTTAC----CCA
1 ATGTATCGATACATTTTCA
8065 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACA-TTTTCA
* *
8086 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTCA
8106 ATGTATCGATACATTTTTCA
1 ATGTATCGATACA-TTTTCA
8126 ATGTATCGATACAT
1 ATGTATCGATACAT
8140 CTAGTTAAAA
Statistics
Matches: 115, Mismatches: 20, Indels: 23
0.73 0.13 0.15
Matches are distributed among these distances:
14 1 0.01
15 2 0.02
16 10 0.09
17 5 0.04
19 4 0.03
20 90 0.78
21 3 0.03
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (19 bp):
ATGTATCGATACATTTTCA
Found at i:8068 original size:92 final size:92
Alignment explanation
Indices: 7963--8139 Score: 336
Period size: 92 Copynumber: 1.9 Consensus size: 92
7953 AAAAGTCACA
7963 TTTTTACCCAGATGTATCGATACAGTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACAGTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
8028 TCTTCAATGTATCGATACATTCTATTT
66 TCTTCAATGTATCGATACATTCTATTT
*
8055 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACAGTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
*
8120 TTTTCAATGTATCGATACAT
66 TCTTCAATGTATCGATACAT
8140 CTAGTTAAAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 83 1.00
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (92 bp):
TTTTTACCCAGATGTATCGATACAGTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TCTTCAATGTATCGATACATTCTATTT
Found at i:11464 original size:22 final size:21
Alignment explanation
Indices: 11439--11493 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
11429 TTATAATAAC
11439 TTAAACTGATTTAATCCGAATA
1 TTAAACTGATTTAAT-CGAATA
* * * *
11461 TTAAACTCAATTAATTGAATG
1 TTAAACTGATTTAATCGAATA
11482 TTAAACTCGATT
1 TTAAACT-GATT
11494 GCTCTGTTAC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (21 bp):
TTAAACTGATTTAATCGAATA
Found at i:16718 original size:15 final size:15
Alignment explanation
Indices: 16698--16728 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
16688 TTTTGTCAAA
16698 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
16713 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
16728 T
1 T
16729 ACGAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (15 bp):
TCAAGTAAGATTGTG
Done.