genome.fa.s943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold943
Parameters: 2 7 7 80 10 50 1000
Length:  72556

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2660--2734	20	3.8	20	92	0	123	41	18	12	28	1.86
2699--2816	52	2.3	52	100	0	236	40	20	15	23	1.90
2699--2836	52	2.6	51	93	4	197	42	18	13	24	1.87
2803--2857	21	2.7	21	83	8	69	49	10	10	29	1.72
4635--4700	33	2.0	33	93	0	114	25	10	16	46	1.79
8845--8870	2	13.0	2	100	0	52	50	0	0	50	1.00
10102--10179	37	2.1	37	87	0	111	65	6	7	20	1.41
10115--10447	164	2.0	168	86	2	476	53	11	10	24	1.68
11815--11881	37	1.9	35	88	11	102	32	25	8	32	1.87
12319--12371	19	2.7	20	88	8	81	28	11	15	45	1.80
14482--14528	23	2.0	24	84	12	62	61	19	4	14	1.49
17601--17665	32	2.0	32	87	6	94	27	10	15	46	1.79
17622--17647	13	2.0	13	100	0	52	30	15	15	38	1.88
17696--17752	21	2.7	21	100	0	114	26	19	10	43	1.83
18419--18444	2	13.0	2	100	0	52	50	0	0	50	1.00
19368--19410	12	3.5	12	87	12	61	0	9	2	88	0.60
19376--19409	10	3.5	10	88	8	52	0	5	2	91	0.51
19368--19409	19	2.2	19	91	0	66	0	7	2	90	0.53
24857--25027	79	2.2	78	85	6	227	32	14	23	29	1.94
25009--25126	52	2.3	51	82	4	139	32	15	25	27	1.95
27557--27608	19	2.7	20	81	6	70	46	15	13	25	1.82
28250--28497	83	2.9	82	75	15	195	41	13	24	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28251--28497	42	5.8	42	72	17	154	42	13	23	20	1.88
28476--28547	37	1.9	37	85	0	99	43	15	30	11	1.81
28526--28939	61	7.0	61	87	3	462	28	18	25	26	1.98
28526--28939	121	3.5	121	81	8	448	28	18	25	26	1.98
29965--30017	1	53.0	1	76	0	52	0	0	11	88	0.51
29965--30017	10	5.4	10	84	11	74	0	0	11	88	0.51
29955--30016	28	2.2	28	85	2	79	1	1	11	85	0.74
29962--30015	18	2.9	18	91	2	81	0	0	12	87	0.56
41618--41694	21	3.7	21	89	3	111	35	12	16	35	1.88
41730--41797	19	3.9	19	78	21	85	35	11	14	38	1.83
41751--41775	13	1.9	13	100	0	50	36	16	16	32	1.90
41732--41794	32	2.0	32	96	0	117	34	12	15	36	1.86
41817--41871	20	2.8	20	82	0	74	23	14	16	45	1.84
42382--42410	12	2.3	13	94	5	51	86	13	0	0	0.58
44210--44334	53	2.4	50	81	9	144	33	23	12	31	1.91
44349--44571	52	4.3	52	81	7	213	30	25	11	32	1.91
46573--46793	79	2.8	77	82	6	239	33	14	23	28	1.94
46727--46843	51	2.3	51	88	2	164	32	13	26	27	1.94
46827--46898	28	2.6	28	100	0	144	25	18	31	25	1.97
48590--48615	13	2.0	13	100	0	52	30	15	15	38	1.88
50703--50741	20	1.9	20	84	5	51	10	30	43	15	1.80
53269--53299	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55100--55144	21	2.1	21	84	8	56	22	20	4	53	1.63
57364--57389	13	2.0	13	100	0	52	30	15	15	38	1.88
59207--59261	20	2.8	20	97	0	101	45	10	12	30	1.77
59206--59380	69	2.5	70	87	0	244	43	14	14	27	1.84
59280--59329	20	2.5	20	96	0	91	46	16	12	26	1.81
60824--60858	16	2.2	16	89	0	52	60	11	14	14	1.60
62332--62398	31	2.2	29	84	15	82	52	1	17	28	1.54
66978--67049	28	2.6	28	88	0	99	23	19	34	22	1.96
66904--67102	107	1.9	107	81	6	242	29	16	27	27	1.97
67028--67219	51	3.8	49	76	16	167	33	10	25	29	1.90
67089--67257	51	3.3	52	82	5	175	32	13	25	28	1.93
67032--67257	51	4.4	51	78	7	163	32	11	25	29	1.92
68630--68655	13	2.0	13	100	0	52	38	15	15	30	1.88
68610--68675	33	2.0	33	87	0	96	42	15	15	27	1.86
70163--70770	55	10.9	55	87	7	659	23	19	28	28	1.98
70163--70709	157	3.3	161	84	9	633	22	19	29	28	1.98
70398--70808	59	7.0	59	88	4	527	26	19	27	26	1.99
71764--71823	1	60.0	1	76	0	57	0	3	8	88	0.62
71764--71823	9	6.8	9	83	12	63	0	3	8	88	0.62
71764--71821	15	3.9	14	86	8	80	0	3	8	87	0.64
71764--71824	24	2.6	24	89	2	97	0	3	9	86	0.67

Tables:   1

The End!