genome.fa.s948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold948
Parameters: 2 7 7 80 10 50 1000
Length:  39749

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540--612	27	2.7	27	87	4	94	24	10	19	45	1.82
721--754	13	2.6	13	90	0	59	8	38	5	47	1.59
4345--4384	16	2.6	16	92	4	64	27	22	15	35	1.94
4580--4675	32	2.9	33	72	17	92	44	4	0	51	1.21
4805--4907	14	7.7	14	70	21	69	38	0	0	60	1.04
4812--4916	15	6.2	18	65	26	68	37	0	0	61	1.02
4806--4887	33	2.6	32	83	11	89	40	0	1	58	1.06
4812--4926	20	6.2	18	69	20	69	37	0	1	60	1.07
5559--5629	27	2.6	27	84	4	90	28	7	16	47	1.73
5737--5762	13	2.0	13	100	0	52	7	38	7	46	1.61
9775--9865	27	3.5	26	81	8	105	24	7	21	46	1.78
10348--10412	23	3.1	23	66	25	70	26	0	16	56	1.40
10321--10412	40	2.3	40	96	0	166	25	1	18	55	1.49
10333--10396	17	3.4	17	69	22	56	23	0	23	53	1.47
10463--10503	21	2.0	20	85	4	55	26	2	4	65	1.25
11886--12386	154	3.2	155	77	6	425	28	15	15	40	1.89
14459--14493	16	2.2	16	94	0	61	37	28	2	31	1.72
14879--14904	13	2.0	13	100	0	52	30	15	15	38	1.88
16078--16193	51	2.3	51	80	7	128	31	23	12	33	1.91
16183--16258	27	2.8	27	88	6	100	26	31	19	22	1.98
16242--16621	52	7.3	51	69	9	185	29	27	11	31	1.92
16102--16731	210	3.0	209	91	2	976	28	27	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16635--16803	78	2.2	79	80	7	193	24	28	16	30	1.96
21891--21951	13	5.2	13	74	22	71	39	14	14	31	1.87
21873--21971	33	3.0	33	94	2	164	40	13	15	31	1.85
21905--21973	20	3.8	20	75	25	89	39	11	14	34	1.82
22092--22130	21	1.9	20	94	5	69	35	12	15	35	1.86
24432--24506	20	3.6	20	74	10	69	38	10	14	36	1.81

Tables:   1

The End!