genome.fa.s949.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold949
Parameters: 2 7 7 80 10 50 1000
Length:  126206

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--194	55	3.3	55	82	8	207	26	20	25	26	1.99
398--525	55	2.3	54	83	10	161	24	21	26	27	1.99
218--502	116	2.5	114	79	9	317	26	20	26	26	1.99
218--525	117	2.7	110	77	13	286	26	20	26	26	1.99
10--770	326	2.3	322	87	4	1068	27	20	27	25	1.99
596--985	60	6.4	59	84	7	455	30	19	25	25	1.98
540--987	122	3.7	120	85	7	556	29	19	26	25	1.99
598--987	182	2.1	182	85	5	529	30	18	25	25	1.98
7146--7201	28	2.0	28	92	0	94	28	17	32	21	1.96
7184--7298	51	2.3	51	82	8	144	34	8	23	33	1.86
7153--7433	130	2.2	130	84	3	377	32	11	25	29	1.91
7189--7542	181	2.0	181	87	1	521	35	9	23	31	1.87
7314--7481	51	3.3	51	86	4	214	32	10	25	31	1.90
7413--7778	79	4.6	80	82	5	433	33	11	25	29	1.91
7413--7778	157	2.3	158	87	4	515	33	11	25	29	1.91
10116--10211	20	4.8	19	89	6	122	42	15	12	29	1.84
10116--10211	40	2.4	40	91	3	158	42	15	12	29	1.84
15880--15905	13	2.0	13	100	0	52	30	15	15	38	1.88
20558--20589	15	2.1	15	94	0	55	15	21	15	46	1.83
24683--24708	13	2.0	13	100	0	52	30	15	15	38	1.88
30353--30396	24	1.9	22	82	17	54	43	20	18	18	1.89
32419--32465	3	15.7	3	100	0	94	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33212--33288	15	5.4	14	72	17	61	79	1	6	12	0.99
35575--35758	75	2.4	74	82	6	201	40	14	13	31	1.85
40992--41027	17	2.1	17	94	0	63	41	16	0	41	1.48
41130--41219	37	2.4	37	84	1	108	41	18	11	28	1.85
41125--41250	38	3.4	37	80	4	128	39	18	15	26	1.90
45810--45850	21	2.0	21	85	0	55	29	7	14	48	1.71
45878--46005	66	1.9	66	87	3	186	42	6	16	35	1.73
46991--47040	20	2.5	20	87	3	66	32	18	18	32	1.94
46987--47040	19	2.8	19	85	2	72	29	16	18	35	1.93
47095--47135	20	2.0	20	86	9	57	36	12	14	36	1.84
48367--48392	13	2.0	13	100	0	52	30	15	15	38	1.88
48452--48524	20	3.6	20	81	3	101	31	19	13	35	1.91
48431--48524	41	2.3	41	96	0	170	30	18	12	38	1.88
48431--48506	21	3.7	21	78	3	91	30	17	11	40	1.85
50971--51009	13	3.0	13	96	0	69	35	15	17	30	1.91
50995--51073	20	3.7	20	75	18	70	45	15	13	25	1.83
57168--57193	13	2.0	13	100	0	52	30	15	15	38	1.88
57253--57325	20	3.6	20	81	3	101	31	19	13	35	1.91
57232--57325	41	2.3	41	96	0	170	30	18	12	38	1.88
57232--57307	21	3.7	21	78	3	91	30	17	11	40	1.85
58724--58760	3	12.3	3	88	0	56	37	2	29	29	1.71
63412--63451	20	2.0	20	85	14	55	32	22	0	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65802--65828	13	2.1	13	100	0	54	29	14	14	40	1.86
65814--65887	20	3.8	20	89	5	107	33	14	17	33	1.91
65937--65961	13	1.9	13	100	0	50	36	16	16	32	1.90
65919--65981	33	1.9	32	87	12	92	34	15	17	31	1.92
67940--68337	87	4.6	87	80	5	385	34	12	23	29	1.92
76561--76592	2	16.0	2	100	0	64	50	0	50	0	1.00
80837--80895	29	2.0	29	90	6	93	50	8	13	27	1.70
82450--82481	17	2.0	17	88	11	50	50	0	12	37	1.41
82403--82519	60	2.0	60	93	1	200	41	1	16	41	1.58
82595--82642	17	3.0	17	71	22	50	58	2	6	33	1.35
82455--82693	85	3.0	78	76	12	261	45	3	15	35	1.63
82926--82984	28	2.0	29	80	6	66	20	3	8	67	1.31
83435--83492	29	2.0	30	83	10	75	51	0	5	43	1.24
83552--83737	91	2.0	91	90	0	291	39	5	7	47	1.55
92712--92776	31	2.1	31	100	0	130	41	15	15	27	1.87
92816--92853	19	2.0	19	100	0	76	36	15	15	31	1.90
94826--94850	13	1.9	13	100	0	50	36	16	16	32	1.90
94803--94870	33	2.1	33	88	2	102	32	14	17	35	1.91
103143--103167	13	1.9	13	100	0	50	36	16	16	32	1.90
103120--103187	33	2.1	32	86	2	91	33	14	16	35	1.89
113618--113653	18	1.9	18	88	5	54	80	19	0	0	0.71
113622--113655	15	2.3	15	90	5	52	79	20	0	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115052--115442	58	6.9	56	87	6	529	32	30	16	20	1.95
115053--115442	28	13.7	29	85	7	475	32	30	16	20	1.95
115052--115442	143	2.7	143	87	6	571	32	30	16	20	1.95
115488--115623	43	3.0	43	75	12	155	26	24	16	32	1.96
115483--115804	49	6.7	49	78	6	266	23	25	17	33	1.96
115548--115842	101	3.0	97	80	5	295	23	26	17	33	1.96
115483--115752	150	1.8	145	85	7	382	24	25	17	32	1.96
116624--116696	13	5.2	13	74	18	65	32	12	13	41	1.82
116604--116681	32	2.4	32	93	2	138	33	14	12	39	1.84
120644--121043	160	2.5	162	87	1	588	41	14	10	34	1.79
121854--121891	20	1.9	20	94	0	67	36	5	10	47	1.61
121844--121989	51	2.9	51	90	4	224	30	15	8	45	1.76

Tables:   1

The End!