genome.fa.s951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold951
Parameters: 2 7 7 80 10 50 1000
Length:  111253

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6095--6154	20	3.0	20	82	0	84	31	15	13	40	1.85
6095--6165	20	3.5	20	81	7	81	32	15	11	40	1.83
13461--13528	34	2.1	32	81	10	75	57	1	1	39	1.17
16822--16853	15	2.1	15	100	0	64	68	6	0	25	1.12
20340--20378	16	2.4	17	86	4	53	58	0	0	41	0.98
20575--20617	18	2.2	21	88	12	65	62	0	0	37	0.95
21632--21688	18	3.1	18	80	10	53	40	7	0	52	1.28
22441--22478	17	2.2	18	86	9	53	26	0	7	65	1.19
24851--24906	21	2.7	21	100	0	112	32	21	14	32	1.93
25027--25080	20	2.7	20	94	0	90	27	14	20	37	1.92
25047--25112	33	2.0	33	93	0	114	27	16	16	39	1.90
25023--25112	20	4.8	20	74	18	86	27	15	16	40	1.89
27266--27483	51	4.3	52	75	6	216	29	27	11	31	1.92
27266--27483	102	2.2	102	86	3	307	29	27	11	31	1.92
27604--27720	51	2.3	52	85	7	168	30	27	11	29	1.92
27704--27777	28	2.6	28	95	0	139	21	35	17	25	1.95
28850--28888	10	3.3	12	80	20	55	53	0	2	43	1.14
29110--29153	14	3.1	15	80	9	56	27	2	4	65	1.23
29166--29210	17	2.6	18	85	3	65	28	0	2	68	1.01
29166--29213	18	2.8	18	84	6	64	31	0	2	66	1.03
29299--29341	19	2.3	19	84	8	61	39	2	0	58	1.11
31294--31324	15	2.1	15	100	0	62	29	25	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31957--32003	21	2.3	21	92	3	78	42	10	14	31	1.80
38238--38276	17	2.2	18	90	9	62	38	0	0	61	0.96
39590--39618	15	1.9	15	100	0	58	48	0	0	51	1.00
39564--39618	9	6.8	9	75	23	59	49	0	0	50	1.00
39590--39650	17	3.6	17	80	6	63	44	0	1	54	1.10
39564--39618	24	2.3	24	96	0	101	49	0	0	50	1.00
41737--41788	15	3.5	15	71	10	52	44	0	0	55	0.99
41939--41981	15	3.2	13	84	15	52	30	0	2	67	1.03
42982--43199	34	6.5	34	85	5	282	40	27	7	24	1.82
42980--43199	67	3.3	67	88	1	323	40	27	7	24	1.82
47609--47824	34	6.4	34	85	5	278	40	27	7	24	1.83
47607--47824	67	3.2	67	88	1	319	40	27	7	24	1.82
50409--50461	27	2.0	27	100	0	106	18	7	22	50	1.72
50409--50477	27	2.6	27	88	6	88	21	5	20	52	1.67
54984--55038	28	2.0	28	92	0	92	18	12	20	49	1.79
55043--55088	24	1.9	24	95	0	83	19	6	28	45	1.75
59435--59489	17	3.4	17	71	28	57	45	0	0	54	0.99
64644--64683	20	2.0	20	90	9	64	30	12	22	35	1.91
65085--65127	22	2.0	22	85	0	59	55	0	2	41	1.12
67949--67975	9	3.0	9	100	0	54	44	0	0	55	0.99
72291--72351	31	2.0	30	84	12	79	37	0	1	60	1.07
72404--72464	20	3.0	21	85	4	72	44	3	1	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72447--72511	32	2.0	32	82	11	80	38	3	1	56	1.24
72421--72480	21	2.6	24	84	10	72	45	0	0	55	0.99
72287--73215	158	5.7	160	78	12	873	38	5	4	51	1.45
72606--73202	157	3.7	155	78	13	585	38	6	4	50	1.49
72731--72784	21	2.7	21	94	5	94	46	7	0	46	1.31
72206--73188	330	3.0	326	91	2	1541	39	5	4	51	1.44
73072--73114	21	2.0	21	100	0	86	48	9	0	41	1.35
72872--73127	138	1.9	138	85	6	358	38	5	5	50	1.49
72927--73254	159	2.1	156	90	5	534	37	5	6	51	1.50
73173--73564	202	1.9	202	87	4	567	36	6	7	50	1.56
73556--73624	19	3.6	20	76	7	54	46	2	4	46	1.37
75252--75298	18	2.7	18	83	3	60	42	0	0	57	0.98
75635--75680	22	2.1	23	88	8	69	56	0	0	43	0.99
76399--76459	32	1.9	31	83	3	77	50	0	1	47	1.10
84760--84826	33	2.0	33	88	0	98	34	11	13	40	1.81
84780--84804	13	1.9	13	100	0	50	36	16	16	32	1.90
84867--84891	13	1.9	13	100	0	50	32	16	16	36	1.90
84900--85023	52	2.4	51	90	2	203	35	17	17	29	1.93
89153--89179	10	2.7	10	100	0	54	0	0	22	77	0.76
98869--98968	1	100.0	1	75	0	83	87	9	2	2	0.71
98868--98968	24	4.0	24	85	12	123	86	9	1	1	0.74
98869--98968	15	6.5	15	79	10	105	87	9	2	2	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98869--98968	16	6.3	16	82	11	100	87	9	2	2	0.71
98869--98968	21	5.2	19	80	19	111	87	9	2	2	0.71
100410--100488	28	2.7	30	86	13	119	30	22	18	27	1.98
100626--100702	30	2.6	30	89	4	122	32	29	19	18	1.95
100626--100721	30	3.3	28	81	8	104	32	30	16	20	1.95
100688--100812	32	4.0	30	78	10	126	29	35	17	17	1.93
100708--100801	32	3.0	32	90	3	154	29	38	18	13	1.89
100805--102009	49	24.7	49	82	7	1393	26	25	17	30	1.97
100805--102009	291	4.1	291	87	6	1649	26	25	17	30	1.97
100800--102009	392	3.1	388	92	4	1921	26	25	17	30	1.97
101623--102073	50	8.9	50	79	6	482	25	25	16	32	1.96
102887--102911	13	1.9	13	100	0	50	36	16	16	32	1.90
102975--102999	13	1.9	13	100	0	50	32	16	16	36	1.90
103008--103130	51	2.4	52	94	2	214	34	18	17	28	1.94
111064--111116	9	5.8	9	91	4	70	90	7	1	0	0.52
111063--111107	1	45.0	1	86	0	63	93	6	0	0	0.35

Tables:   1

The End!