genome.fa.s953.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold953
Parameters: 2 7 7 80 10 50 1000
Length:  189922

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38--67	2	15.0	2	100	0	60	0	50	0	50	1.00
542--582	13	3.2	13	81	18	50	53	0	0	46	1.00
1627--1666	21	1.9	21	85	10	55	27	2	0	70	1.01
7062--7096	17	2.1	17	94	0	61	22	5	37	34	1.78
8990--9018	12	2.3	13	94	5	51	62	0	3	34	1.12
9012--9044	16	2.0	17	88	5	50	75	3	3	18	1.06
9429--9482	12	4.3	13	73	17	51	44	0	1	53	1.11
15891--15943	22	2.4	22	90	6	81	62	0	0	37	0.96
15891--15935	11	4.1	11	83	8	56	66	0	0	33	0.92
15900--15939	11	3.6	11	86	0	62	65	0	0	35	0.93
16668--16706	10	3.8	10	83	16	53	48	0	0	51	1.00
16654--16742	9	9.7	9	73	13	65	40	2	1	56	1.19
16675--16736	21	2.9	21	75	18	65	40	0	1	58	1.08
16830--16872	18	2.4	18	100	0	86	30	23	16	30	1.96
16964--16996	14	2.4	14	95	5	59	33	12	12	42	1.79
18560--18590	15	2.1	15	93	0	53	12	9	0	77	0.99
21478--21507	2	15.0	2	100	0	60	50	0	0	50	1.00
23179--23203	6	4.2	6	100	0	50	0	20	48	32	1.50
30108--30141	6	5.8	6	89	6	52	0	0	11	88	0.52
30108--30141	11	2.9	12	86	8	52	0	0	11	88	0.52
30108--30141	17	1.9	18	88	5	52	0	0	11	88	0.52
32973--33030	30	1.9	30	85	0	80	48	20	25	5	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49460--49631	37	4.1	42	68	19	117	44	1	1	53	1.15
49785--49814	15	2.1	15	93	6	53	43	0	0	56	0.99
49809--49912	37	2.8	36	76	12	104	50	0	0	50	1.00
51558--51591	17	2.1	16	88	5	50	52	0	0	47	1.00
51654--51689	15	2.5	15	86	4	56	19	2	0	77	0.88
51976--52044	31	2.3	30	85	7	86	59	1	2	36	1.21
51992--52051	27	2.1	30	84	12	81	53	3	1	41	1.27
52159--52224	16	4.1	16	74	0	51	46	27	13	12	1.78
52357--52399	16	2.8	15	82	6	59	30	2	0	67	1.03
52788--52834	19	2.5	19	86	6	60	46	0	4	48	1.21
52830--52875	14	3.3	15	82	11	53	65	0	0	34	0.93
52852--52907	18	3.1	19	84	10	80	69	1	0	28	0.98
53915--53945	14	2.3	13	94	5	53	32	0	0	67	0.91
54606--54678	20	3.6	19	74	22	60	43	0	0	56	0.99
54606--54687	30	2.7	31	74	12	80	43	0	0	56	0.99
54643--54732	47	1.9	47	82	13	114	41	3	1	54	1.24
55434--55476	22	2.0	22	86	8	63	37	0	0	62	0.95
55456--55510	26	2.1	27	86	3	76	52	0	0	47	1.00
56012--56061	24	2.1	23	88	3	73	42	2	2	54	1.23
56626--56656	13	2.4	13	100	0	62	32	0	9	58	1.31
57778--57807	4	7.5	4	100	0	60	76	0	0	23	0.78
58170--58212	12	3.5	12	75	6	50	20	4	4	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58167--58218	25	2.1	25	100	0	104	25	3	7	63	1.38
61564--61596	2	16.5	2	100	0	66	48	0	0	51	1.00
62875--63371	242	2.0	245	94	2	869	46	6	10	36	1.65
72184--72208	13	1.9	13	100	0	50	60	8	16	16	1.58
77212--77242	2	15.5	2	100	0	62	51	0	48	0	1.00
85639--85683	2	22.5	2	95	0	81	46	2	0	51	1.13
88260--88289	2	15.0	2	92	0	51	46	0	3	50	1.18
88519--88588	36	1.9	36	94	0	122	27	20	24	28	1.99
91371--91415	21	2.1	21	100	0	90	20	6	22	51	1.70
94158--94182	11	2.3	11	100	0	50	84	0	0	16	0.63
94921--94962	13	3.5	12	77	9	50	57	2	0	40	1.12
95408--95527	60	2.0	60	96	0	222	46	12	16	24	1.81
96404--96438	16	2.1	17	89	5	54	31	28	8	31	1.87
100329--100366	15	2.5	15	83	8	51	63	13	13	10	1.53
102433--102471	2	19.5	2	94	0	69	48	2	0	48	1.15
105908--105933	4	6.5	4	100	0	52	76	0	0	23	0.78
110870--110944	33	2.4	32	80	10	84	73	8	12	6	1.25
110870--110944	30	2.4	32	80	10	84	73	8	12	6	1.25
110912--110955	23	1.9	23	85	0	61	77	4	11	6	1.11
114549--114585	18	2.1	18	89	0	56	56	0	43	0	0.99
123010--123058	24	2.0	24	96	0	89	26	20	14	38	1.91
128081--128128	18	2.7	18	87	6	62	75	8	10	6	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129732--129784	2	26.5	2	96	0	97	50	0	49	0	1.00
138043--138093	11	4.9	11	81	13	54	39	1	1	56	1.22
138057--138103	21	2.2	21	84	0	58	38	4	2	55	1.31
138145--138225	21	3.9	20	80	13	67	38	6	6	49	1.53
138152--138205	22	2.6	20	85	11	65	37	7	5	50	1.54
138191--138229	21	1.9	21	89	5	62	41	7	2	48	1.45
138239--138310	21	3.4	21	78	0	63	38	1	9	50	1.44
138441--138478	19	2.0	19	90	10	60	60	0	0	39	0.97
138597--138713	21	5.5	21	72	5	83	38	6	7	47	1.59
146201--146225	2	12.5	2	100	0	50	52	0	48	0	1.00
148522--148604	28	3.0	28	89	1	132	31	22	21	24	1.98
155143--155195	26	2.0	26	100	0	106	37	7	3	50	1.49
159561--159618	29	2.0	29	100	0	116	41	27	20	10	1.85
165055--165080	13	2.0	13	100	0	52	15	15	23	46	1.83
165636--165719	28	3.0	28	91	0	141	30	22	22	23	1.99
172265--172317	26	2.0	26	100	0	106	37	7	3	50	1.49
179264--179305	22	2.0	22	85	4	59	38	7	0	54	1.28
179359--179437	22	3.3	21	69	25	59	59	0	0	40	0.97
179360--179438	28	3.0	27	72	22	87	59	0	0	40	0.97
179353--179416	29	2.2	30	83	13	80	62	0	0	37	0.95
179378--179440	22	2.9	22	86	11	94	58	0	0	41	0.98
179766--179810	22	2.0	22	91	0	72	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179850--179876	14	1.9	14	100	0	54	25	0	0	74	0.83
182938--183394	237	2.0	229	87	6	652	39	21	13	25	1.89

Tables:   1

The End!