genome.fa.s954.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold954
Parameters: 2 7 7 80 10 50 1000
Length:  65097

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6472--6521	21	2.4	21	79	0	64	32	18	18	32	1.94
6570--6594	13	1.9	13	100	0	50	36	16	16	32	1.90
6550--6616	33	2.0	33	88	0	98	32	11	14	40	1.83
6657--6681	13	1.9	13	100	0	50	32	16	16	36	1.90
6670--6820	52	2.9	52	88	2	223	33	19	15	31	1.93
16503--17217	42	16.7	42	71	11	364	17	26	18	36	1.94
16491--17008	129	4.0	131	79	6	472	17	27	18	36	1.93
16808--17250	43	10.4	42	70	12	172	18	25	18	37	1.94
16503--17250	170	4.4	169	77	9	676	17	26	18	36	1.94
16503--17251	85	8.8	85	76	5	584	17	26	18	36	1.94
17705--17754	22	2.2	22	86	10	57	80	2	0	18	0.82
17704--17752	7	6.7	7	88	6	71	81	2	0	16	0.78
17704--17752	15	3.3	15	91	5	66	81	2	0	16	0.78
17973--18004	16	2.0	16	93	0	55	34	25	28	12	1.92
23470--23536	17	3.7	17	83	13	89	80	7	5	5	1.02
23464--23536	37	1.9	38	89	8	114	80	8	5	5	1.00
23449--23493	13	3.5	13	82	11	65	86	4	4	4	0.78
23459--23536	12	6.5	11	72	17	57	82	7	5	5	0.96
23978--24175	96	2.1	96	99	0	387	33	24	16	25	1.96
25231--25300	33	2.1	33	84	5	88	25	27	20	27	1.99
25275--25360	32	2.7	32	83	0	109	32	30	17	19	1.95
25445--25795	52	6.8	52	73	8	173	25	21	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34953--35974	28	37.0	27	78	10	493	27	29	15	28	1.96
34953--35675	82	8.8	81	76	10	439	25	30	14	29	1.95
35219--35406	57	3.3	57	79	3	207	28	32	14	24	1.95
35363--35418	29	1.9	29	81	0	67	26	30	12	30	1.93
35668--36045	28	13.5	28	86	2	483	30	28	17	24	1.97
36047--36079	16	2.1	16	100	0	66	33	18	18	30	1.94
36064--36303	32	7.5	32	77	4	207	30	28	17	23	1.97
36730--36771	18	2.3	18	84	8	50	83	4	4	7	0.91
36836--36869	17	2.0	17	88	0	50	79	2	11	5	1.02
41345--41387	4	11.5	4	80	14	56	76	0	0	23	0.78
41342--41389	25	2.0	22	88	11	69	77	0	0	22	0.78
41334--41397	29	2.2	28	83	2	92	68	0	0	31	0.90
41449--41526	13	5.5	13	69	16	57	24	20	10	44	1.82
41462--41515	16	3.6	16	70	14	60	24	18	9	48	1.77
41444--41543	29	3.4	29	95	0	173	25	19	8	48	1.76
42271--42310	20	2.0	20	85	9	55	77	15	2	5	1.04
43025--43871	421	2.0	421	93	0	1444	30	9	18	41	1.83
56686--57284	42	14.2	43	74	6	411	18	29	18	33	1.95
56686--57284	84	7.1	84	84	1	689	18	29	18	33	1.95
56686--57284	169	3.6	169	85	1	738	18	29	18	33	1.95
56686--57284	254	2.4	254	85	2	677	18	29	18	33	1.95
57809--57860	18	3.0	16	78	15	50	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57814--57858	14	3.1	15	79	20	60	75	0	0	24	0.80
57915--57998	29	2.9	29	89	1	123	26	19	8	46	1.77
57949--58077	43	3.0	43	87	3	188	25	19	10	44	1.81
57983--58051	18	3.4	18	70	24	57	26	20	11	42	1.86
61816--61868	20	2.7	20	88	5	72	41	13	15	30	1.85
62656--63527	49	18.5	49	71	12	439	31	18	25	25	1.97
62803--63355	238	2.3	238	91	0	892	29	18	26	25	1.98
62950--63118	88	1.9	88	91	0	275	29	19	24	26	1.98
62903--63159	137	1.9	139	84	2	347	29	19	25	25	1.98
63049--63258	101	2.1	98	81	2	231	30	19	26	24	1.98
63248--63484	39	5.6	39	69	16	141	28	18	25	27	1.98
63276--63531	48	5.7	47	71	16	211	29	18	24	27	1.98
63189--63531	87	3.9	88	87	0	465	28	18	25	27	1.98
63560--63684	57	2.2	57	85	5	162	17	17	32	32	1.94
63548--63684	29	4.6	30	80	9	138	18	19	30	31	1.96
63698--63950	27	8.7	27	75	17	186	30	13	32	24	1.93
63837--63929	34	2.8	32	75	15	91	36	11	29	22	1.90
63844--63929	33	2.6	32	80	7	100	37	10	30	22	1.87
63931--64014	32	2.7	31	89	7	125	25	17	30	26	1.97

Tables:   1

The End!