Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold955
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12346
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Found at i:1984 original size:475 final size:476
Alignment explanation
Indices: 1--12346 Score: 17936
Period size: 475 Copynumber: 26.0 Consensus size: 476
* * * *
1 GAAAAGAATGGGTTTATAGTGCCGAATAACAAAAAGAATGAAGATCATTGCTACAATCCTTA-TT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
65 GTCTCATTTGAGGCGCGAAGTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * *
130 CCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
*
195 ATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
*
260 CGGTGGAAAGAAAACCTTTTCCTGCGACACC-AAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* * * *
324 TGGGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGCCTTAAT
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
*
389 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAATC
391 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATC
*
454 GTCAATACCATTTAT-CTAAC
456 GTCAATATCATTTATCCTAAC
*
474 GAAAAGAATGTGTTTATAGTGCCTAATCAGAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * *
539 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATACATTCTTGCTAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
*
604 CCAAAGCGTCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * *
669 ATGGTGATTAGTATTACTATTCATGTTTGTCTTATTTAGGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
* * *
734 CGGTGGGAAGAAAACCTTTTTTTGCGACACC-AA--ATCAATGTCTTGTATCCTAAAAAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* ** *
796 TGGGTTCTTAGTTCCCAATCTTG-AAAGAATGGAGACTATTGTGAGAATCAATGATTGTCATAAT
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
**
860 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCACACAAAAGAAAATC
391 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATC
* *
925 ATCAATATCTTTTATCCTAAC
456 GTCAATATCATTTATCCTAAC
* * * *
946 GAAAAGAATG-GGTTATAGTGCCGAATCACAAAAAAAATGAAGATCACTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * * *
1010 GTCTCATTTGAGGCCCGAACTTAGACTTTAAATAAAATGGAGTGAAGAAATCCATTCTTGTGATT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * ** * *
1075 CCAAAGCGTCAATTTCATCTATACAAAAAGAG-TGACTACGTTGATGGTGCCTAATGCTGAAAAC
131 CCAAAGCATCAATTTCGTCTAT-CCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAG
* * * *
1139 AATGGGGATTAGCATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGACTCTAA-CAAA
195 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAA
* * * * *
1203 ACAGTGGAATG-AAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAAGGAAGGGA
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
* * *
1267 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATTGATGAATGTCATAA
325 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAA
* * *
1332 TTAAGGGATGAATTTTTATTTTAAG-GAAAATAAGGCAAAGAAATGATTTCCATACAAAAGAAAA
390 TTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAA
* *
1396 TCGTCAATATCATTTACCCAAAC
454 TCGTCAATATCATTTATCCTAAC
* * * * * *
1419 GAAAAAAATGTGTTAATCGTGCCTAATCAC-AAATGAATGAAGATCTTTACTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * *
1483 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAATGGAGTGAAGAAATACATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * *
1548 CCAAAGCATCAATTCCGTCTATCGTGATGAGTTGACTATGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
*
1613 ATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
*
1678 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAACGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* *
1743 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTATC-TGAA
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT-AA
* * *
1807 TTTAGGGATGAATTTTTTACTTTAGCAAAAATAGGGCAAAGAAAATGATTTCCATGC-AAAGGAA
390 TTTAGGGATGAA-TTTTTATTTTAGCGAAAATAGGGCAAAG-AAATGATTTCCATGCAAAAGAAA
*
1871 ATTGTCAATATCATTTATCCTAAC
453 ATCGTCAATATCATTTATCCTAAC
*
1895 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTA-TT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * *
1959 GCCTCATTTGAGGCGCG-ACTTAGAC-TTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
2022 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATAGTGCCTAATGCTGAAATGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* *
2087 ATGGGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTAACAA
196 AT--GGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAA
* * * * *
2151 AAACGGTGGAAAGAAAACCTTTTCTTGCGATAAGCAAAGCATCAATATCATGTATCCTAATGAAG
258 AAACGGTGGAAAGAAAACCTTTTCTTGCGA-CACCAAAGCATCAATGTCTTGTATCCTAAAGAAG
* * *
2216 GGAATGGGTTC-TAGTTCCCAATCTTGAAACGAATGGAAACTTTTACGAGAATCGATGATTGTCA
322 GGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCA
* * * * *
2280 CAATTAAGGGATGGATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCGATGCAAAAGG
387 TAATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGA
2344 AAATCGTCAATATCATTTATCCTAAC
451 AAATCGTCAATATCATTTATCCTAAC
*
2370 GAAAAGAATGTGTTTATGGTGCCTAATCAC-AAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
2434 GCCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * *
2499 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACAACGTTTACGATGCCTAATGCTGAAAACA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
*
2564 ATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
* *
2629 CGGTGGAATGAAAACCTTTTCCTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* * * *
2694 TGGGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGCCTTAAT
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
*
2759 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGGCAAAGAAATGATTTCCATGCAAAAGGAAAT
391 TTAGGGATGAATTTTTATTTTAGCGAAAATA-GGGCAAAGAAATGATTTCCATGCAAAAGAAAAT
*
2824 CGTCAATACCATTTAT-CTAAC
455 CGTCAATATCATTTATCCTAAC
*
2845 GAAAAGAATGTGTTTATAGTGCCTAATCAGAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
** * * *
2910 GTCTCATTTGAGGTGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATACATTCTTGCTAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
2975 CCAAAGCGTCAATTTCGTCTATCCTAAAGAGTTGACTACGCTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * *
3040 ATGGTGATTAGTATTACTATTCATGTTTGTCTTATTTAGGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
*
3105 CGGTGGGAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* ** *
3170 TGGGTTCTTAGTTCCCAATCTTG-AAAGAATGGAGACTATTGTGAGAATCAATGATTGTCATAAT
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
* **
3234 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGTAAAGAAATGATTTCCACACAAAAGAAAATC
391 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATC
* *
3299 ATCAATATCTTTTATCCTAAC
456 GTCAATATCATTTATCCTAAC
* * * *
3320 GAAAAGAATGGGTTTATATTGCCGAATCACAAAATA-AATGAAGATCACTGCTAGAATCCTTATT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-AGAATGAAGATCATTGCTAGAATCCTTATT
* * * * *
3384 TGTCTCATTTGAGGCCCGAACTTAGACTTTAAATAAAATGGAGTGAAGAAATCCATTCTTGTGAT
65 TGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAA
* *
3449 TCCAAAGCATCAATTTCGTCTATCCAAAAGAGTTGACTACGTTGATGGTGCCTAATGCTGAAAAA
130 TCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTG-AAAA
* * * * *
3514 CAATGGGGATTAGCATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGACTCTAACAAA
194 GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAA
* * * * *
3579 AACGGTGGAATGAAAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTTTCCTAAGGAAGGG
259 AACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGG
* * * *
3644 AATGGGTTCTTAGTTCCCAATCTTG-AAAGAATAGAGACTGTTACTAGAATTGATGAATGTCATA
324 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATA
* * *
3708 ATTAAGGGATGAATTTTTATTTTAAG-GAAAATAAGGCAAAGAAATGATTTCCATACAAAAGAAA
389 ATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAA
* *
3772 ATCGTCAATATCATTTACCCAAAC
453 ATCGTCAATATCATTTATCCTAAC
* * * * *
3796 GAAAAGAATGTGTTAATCGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * *
3861 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAATGGAGTGAAGAAATACATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * *
3926 CCAAAGCATCAATTCCGTCTATCGTGATGAGTTGACTATGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAG-
*
3991 AATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGAGGCAAACTTTGATTCTAATAAAA
195 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAAT-AAA
4056 AACGGTGGAAAGAAAACCTTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCT-AAGAA-G
259 AACGGTGGAAAGAAAACC-TTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGG
* *
4119 GAATGGGTTCTTAGTTCCC-ATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTATC-T
323 GAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT
* * *
4182 GAATTTAGGGATGAATTTTTACTTTAGCAAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGA
388 -AATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAA
*
4247 AATTGTCAATATCATTTATCCTAAC
452 AATCGTCAATATCATTTATCCTAAC
*
4272 GAAAAGAAGGTG-TTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * *
4336 GCCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
4401 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATAGTGCCTAATGCTGAAATG-
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* *
4465 ATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTAACAAAA
196 ATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAA
* * * *
4529 ACGGTGGAAAGAAAACCTTTTCTTGCGACAGCAAAGCATCAATATCATGTATCCTAATGAAGGGA
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
* * * *
4594 ATGGGTTCTTAGTTCCCAATCTTGAAACGAATGGAAACTTTTACGAGAATCGATGATTGGTCACA
325 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATT-GTCATA
* * * *
4659 ATTAAGGGATGGATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCGATGCAAAAGGAA
389 ATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAA
4723 ATCGTCAATATCATTTATCCTAAC
453 ATCGTCAATATCATTTATCCTAAC
*
4747 GAAAAGAATGTGTTTATGGTGCCTAATCACAAAAAGAATG-AGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
4811 GCCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * *
4876 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACAACGTTTACGATGCCTAATGCTG-AAACA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
*
4940 ATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGAGGCAAAC-TTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
*
5004 CGGTGGAAAGAAAACCTTTTCCTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* * * *
5069 TGGGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGCCTTAAT
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
*
5134 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAATC
391 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATC
*
5199 GTCAATACCATTTAT-CTAAC
456 GTCAATATCATTTATCCTAAC
*
5219 G-AAAGAATGTGTTTATAGTGCCTAATCAGAAAAAGAATGAAGATCATTGCTAGAATCCTTA-TT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * *
5282 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATACATTCTTGCTAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
5347 CCAAAGCGTCAATTTCGTCTATCCTAAAGAGTTGACTACGCTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * *
5412 ATGGTGATTAGTATTACTATTCATGTTTGTCTTATTTAGGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
*
5477 CGGTGGAGAAGAAAACCTTTTTTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
261 CGGTGGA-AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
* ** *
5542 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTATTGTGAGAATCAATGATTGTCATAA
325 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAA
* **
5607 TTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGTAAAGAAATGATTTCCACACAAAAGAAAAT
390 TTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAAT
* *
5672 CATCAATATCTTTTATCCTAAC
455 CGTCAATATCATTTATCCTAAC
* * * *
5694 GAAAAGAATGGGTTTATATTGCCGAATCACAAAATA-AATGAAGATCACTGCTAGAATCCTTATT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-AGAATGAAGATCATTGCTAGAATCCTTATT
* * * * *
5758 TGTCTCATTTGAGGCCCGAACTTAGACTTTAAATAAAATGGAGTGAAGAAATCCATTCTTGTGAT
65 TGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAA
* *
5823 TCCAAAGCATCAATTTCGTCTATCCAAAAAGAGTTGACTACGTTGATGGTGCCTAATGCTGAAAA
130 TCCAAAGCATCAATTTCGTCTATCC-TAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAA
* * * * *
5888 CAATGGGGATTAGCATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGACTCTAACAAA
194 GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAA
* * *
5953 AACGGTGGAATGAAAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCT-AAGAAAGG
259 AACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAG-AAGG
* * *
6017 GAATGGGTTCTTAGTTCCCAATCTTGGAAAAGAATAGAGACTGTTACGAGAATTGATGAATGTCA
323 GAATGGGTTCTTAGTTCCCAATCTT-GAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCA
* * *
6082 TAATTAAGGGATGAATTTTTATTTTAAG-GAAAATAAGGCAAAGAAATGATTTCCATACAAAAGA
387 TAATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGA
* *
6146 AAATCGTCAATATCATTTACCCCAAAC
451 AAATCGTCAATATCATTTA-TCCTAAC
* * * * *
6173 GAAAAGAATGTGTTAATCGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * *
6238 GTCTTATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATACATTCTTGCTAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
6303 CCAAAGCGTCACTTTCGTCTATCCTAAAGAGTTGACTACGTTTAT-GTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * *
6367 ATGGTGATTAGTATTACTATTCATGTTTGTCTTATTTAGGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
6432 C-GTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAATGTTCTTGTATCCTAAAGAAGGG
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATC-AATG-TCTTGTATCCTAAAGAAGGG
* *
6496 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTATC-TG
324 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT-
* *
6560 AATTTA-GGATGAA-TTTTACTTTAGCAAAAATAGGGCAAAGAAATGATTTCCATGCAAAA-AGA
388 AATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGA-A
6622 AATCGTCAATATCATTTATCCTAAC
452 AATCGTCAATATCATTTATCCTAAC
*
6647 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
6712 GTCTCATTTGAGGCGCGAACTTAGACTTTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGA
66 GTCTCATTTGAGGCACGAACTTAGAC--TTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGA
* *
6777 ATCCCAAAGCATCAATTTCGTCTTATCCTAAAGAGTTGACTACATTTATAGTGCCTAATGCTGAA
129 AT-CCAAAGCATCAATTTCGTC-TATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAA
* *
6842 ATGAATGGGGATTAGTAT-ATCTATGTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTAA
192 AAGAATGGGGATTAGTATGA-CTAT-TCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAA
* * * * *
6906 CAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACAGCAAAGCATCAATATCATGTATCCTAATGA
255 TAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGA
* * *
6971 AGGGAATGGGTTC-TAGTTCCCAATCTTGAAACGAATGGAAACTTTTACGAGAATCGATGATTGT
320 AGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGT
* * * *
7035 CAAAATTAAGGGATGGATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCCAAGCAAAA
385 CATAATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAA
* *
7099 GAAACTCGTCAATATCATTTATCC-ATAT
449 GAAAATCGTCAATATCATTTATCCTA-AC
*
7127 GAAAAGAATGTGTTTATGGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * *
7192 GCCTCATTTGAGGCGCGAACCTA-ACTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * *
7256 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACGATGTTTACGATGCCTAATGCTGAAAACA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * ** *
7321 ATGGGGATTAGTATGTCTATTCATGTTTGTCTTATTTAAGTGGTGAACTTTGATTCTAACAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
* *
7386 TGGTGGAAAGAAAACCTTTTCTTGCGACACC-AAGCATCAATGTCTTGTATCCTAATGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* * * *
7450 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGTGACTGTTACGAGAATTGATTACTGTCATAAT
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
* * * * *
7515 TAAGGGATGAAATTTTTAATTTAGGGAAAATAGGGGAAAGAAAATGATTTCCACGCAAAAG-AAA
391 TTAGGGATG-AATTTTTATTTTAGCGAAAATAGGGCAAAG-AAATGATTTCCATGCAAAAGAAAA
*
7579 TCATCAATATCATTTATCCTAAC
454 TCGTCAATATCATTTATCCTAAC
* * * * * *
7602 GAAAAGACTG-GATTTATAGTTCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCGTTATT
1 GAAAAGAATGTG-TTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATT
7666 TGTCTCATTTGAGGCACGAACTTAGACTTTACAG-AAATGGAGTGAAAGAAATCCATTCTTGCGA
65 TGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTG-AAGAAATCCATTCTTGCGA
* * * * * *
7730 ATCCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATGTTTATGGTGCCTAATGTTGAAAA
129 ATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAA
*
7795 GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTTAGAGGCAAACTTTGATTCTAAT--A
194 GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAA
* * * *
7858 AACGGTGGAAAGAAAACCTTTTCCTGTGACACC-AAGCATCAATGTCTTGTATCCTAATGGAGGG
259 AACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGG
* * * *
7922 AATAGGTTCTTAGTTCCCAATCTTGAAAAGAATGGACACTGTTACGAGCATCGATGAATGTCATA
324 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATA
* * * * *
7987 ATTAAGGGTTTAATTTTTCTTTTTAAG-GAAAATAAGGCAAAGAAATGATTTCCATGCAAAAAGA
389 ATTTAGGGATGAATTTTT-ATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGC-AAAAGA
* *
8051 AAATCATCAATATCATTAATCCTAAC
451 AAATCGTCAATATCATTTATCCTAAC
* * * * *
8077 CAAAAGAATGTGTTAATAGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
8142 GTCTCATTTGAGGCACGACCTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGTGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * * *
8207 CCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATGTTTATGGTGACTAATGCTG-AAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* *
8271 ATAGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
* * *
8336 CGGTGGAAAAGGAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
261 CGGTGG-AAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
*
8401 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATCGTCATAA
325 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAA
* * * *
8466 TTAAGGGTTGAATTTTTATTTTAAG-GAAAATAAGGCAAAGAAATGATTTCCATGCAAAAAAAAA
390 TTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGC-AAAAGAAA
8530 AT-GATC-ATATCA-TTATCCTAAC
453 ATCG-TCAATATCATTTATCCTAAC
* * * *
8552 GAAAAGAATGTGTTAATAGTGCCTAATCAC-AAATGAATGAAGATCTTTACTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
*
8616 GTCTCATTTGAGGCACGACCTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * * *
8681 CCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATGTTTTATGGTGCCTAATGCTAAAAAG
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACG-TTTATGGTGCCTAATGCTGAAAAG
* *
8746 AATGGGGAATTAGTCTGACTATTCATGTTTGTCTTATTTTAGAGGCAAACTTTGATTCTAAT-AA
195 AATGGGG-ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAA
* * * *
8810 AACGGTGGAAAGAAAACCTTTTCCTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGGAGGA
259 AACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGG
* *
8875 AATAGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGTC-TG
324 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT-
* * *
8939 AATTTAGGGATGAATTTTTACTTTAGCAAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAA
388 AATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAA
*
9004 ATCGTCAATATCATTTATCCTTAC
453 ATCGTCAATATCATTTATCCTAAC
* * * * *
9028 GAAAAGAATGTGTTTATAGTGCCGAACCACAAAATGAATGCAGATCATTACTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * *
9093 GTCTCATTTGAGGCACAAACTTAGACTTTACAGAAAATGGAGTGAAGAAATGCATTCCTACGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * ** * * * *
9158 CCAAAGCTTCAATTTCATCTATCCTATTGAGTTGGA-AATGTTCATGGTGCCTAATGCTAAAAAG
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTT-GACTACGTTTATGGTGCCTAATGCTGAAAAG
* * *
9222 AATGGGGATTAGTATGACTATTCAGGTTTGTCTTATTTAATAGGCAAACTTTGATTCTAA-CAAA
195 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAA
* * *
9286 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCATTATCATGTATCCTAATA-AAGGG
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA-AGAAGGG
*
9350 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGA-AGCTGTTACGAGAATCGATGATTGCCAT
324 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGA-CTGTTACGAGAATCGATGATTGTCAT
* * *
9414 AATTAAGGGATGGATTTTTATTTTA-AGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAA
388 AATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAA
* *
9478 ATCGTCAATATCCTGTATCCTAAC
453 ATCGTCAATATCATTTATCCTAAC
* * * * *
9502 GAAAAGAA--TGTTTATAGCGTCGAATCACAAAATGAATGAAGATCATTGATAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
9565 GTCTCATTTGAGGCCCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGTGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * *
9630 CCAAAGCATCAATTTCGTCTATCCTAGAGAGTTGACTACATTTATGGTGCCTAATGTTGAAAACA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * * * * * *
9695 ATGGGGATTAGCATGTCTATTCGTGTTTGTCTTATTTAAGAGGTAAAATTTGACTCTAACAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
* * * * * * *
9760 TGGTGCAATGAAAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAAGGAAGGGAG
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* * *
9825 TGGGTTCTTAGTTCCCAATCTTGAAAAGACA--GAGACTGTTATGAGAATTGATGAATGTCATAA
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTACGAGAATCGATGATTGTCATAA
* * * *
9888 TTAAGGGATGAATTTTTATTTCAAG-GAAAATAAGGCAAAGAAATGATTTCCATACAAAAGAAAA
390 TTTAGGGATGAATTTTTATTT-TAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAA
* *
9952 TCGTCAATATCGTTT-TCCCAAAC
454 TCGTCAATATCATTTAT-CCTAAC
* * * * * *
9975 GAAAAGAATGTGTTAATCGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCTTTTTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
*
10040 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATACATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * *
10105 CCAAAGCATCAATTCCGTCTATCCTGATGAGTTGACTATGTTTATGGTGCCTAATGCAGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* *
10170 ATGGGGATTAGTATGGCTATTCATG-TTGTCTTAGTTAAGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
* * *
10234 TGATGGAAAGAAAACC-TTTCTTGCGACACCAAAGCATCAATGTCTTGTAACCTAAAGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* *
10298 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTATC-TGAA
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT-AA
*
10362 TTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAAT
390 TTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAAT
*
10427 CGTCGATATCATTTATCCTAAC
455 CGTCAATATCATTTATCCTAAC
10449 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * *
10514 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATCCATTTTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
10579 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
*
10644 ATGGGGATTAGTATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
* *
10709 CGGT-G---G-AAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTACCCTAATGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
* * *
10769 TGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTTTCATAAT
326 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
* * *
10834 TTAGCGATGAATTTTTGTTTTAGCGAAAATAGGGCAAAGAAATGATTTCCACGCAAAAGAAAATC
391 TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATC
*
10899 ATCAATATCATTTATCCTAAC
456 GTCAATATCATTTATCCTAAC
* * *
10920 GAAAAGAATGTGTTTATAGTGCCTAATCACAATATGAATGAAGATCATTGCTAGAATCTTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
** *
10985 GTCTCATTTGAGGTGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
11050 CCAAAGCATCAATTTCTTCTATCCTAAAGTGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* *
11115 ATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTAATTCTAACAAAA
196 ATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAA
* * * * ** *
11179 A-GGTGGAAAGAAAACCTTTTCATGCGACACTAAAGCATCAACGTCATGTATCCTAGTGATGGGA
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
* * *
11243 ATGGGTTCTTTGTTCCCAATCGTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGTCATAA
325 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAA
**
11308 TTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCACACAAAAGAAAAT
390 TTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAAT
*
11373 CATCAATATCATTTATCCTAAC
455 CGTCAATATCATTTATCCTAAC
* * * *
11395 GAAAAGAATGGGTTTATAGTGCCGAATCA-AAATA-AATGAAGATCACTGCTAGAATCCTTA-TT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * * * *
11457 -TCACATTTGAGGCCCGAACTTAGACTTTGCATAAAATGGAGTGAAGAAATCCATTCTTGTGATT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * *
11521 CCAAAGCATCAATTTCGTCTATCCAAAAAGAGTTGACTACGTTGATGGTGCCTAATGCTGAAAAC
131 CCAAAGCATCAATTTCGTCTATCC-TAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAG
* * * * *
11586 AATGGGGATTAGCATGTCTATTCATGTTCGTCTTATTTAAGAGGCAAACTTTGACTCTAACAAAA
195 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAA
* * * **
11651 ACGGTGGAATGAAAACCTTTTCTTGCGACACTAAAGCATCAAT-TACATGTATCCTATTGAAGGG
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGT-CTTGTATCCTAAAGAAGGG
* * * *
11715 AATGGGTTCTTAGTTGCCAATCTAGAAAAGAATGGAAACTATTACGAGAATCGATGATTGTCATA
324 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATA
* *
11780 A-TTATGGGATGGATTTTTATTTGAAG-GAAAATAGGGCAAAGAAATGATTTCCATGCAAAAG-A
389 ATTTA-GGGATGAATTTTTATTT-TAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAA
* *
11842 AATCGTCAATATCATTTTTCCTAGC
452 AATCGTCAATATCATTTATCCTAAC
* * * *
11867 GAAAAGAATGTGTTTATAGTGCCGAATCACAAAATGAATGAAGATCACTACTAGAATCCTTATTT
1 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
11932 GTCTCATTTGAGGCATGAACTTAGACTTTACAGAGAATGGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * * * *
11997 CTAAAGCATCAATTTCTTCTATCCTAAAGAGTTGA-TAACATTGATGATGCCTAATGCTTAAAAC
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACT-ACGTTTATGGTGCCTAATGCTGAAAAG
* *
12061 AATGGGGATTAGTATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAA
195 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAA
*
12126 ACGG-GGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGA
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
* * * *
12190 ACGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGTGCCTGTTACGAGAATTGAAT-ATTGTCATA
325 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG-ATGATTGTCATA
* * * * *
12254 ATTAAGGGATGGATTTTTATTTTAGGGAAAACA-GGCAAGGAAATGATTTCCACT-CAAAAGAAA
389 ATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCA-TGCAAAAGAAA
*
12317 ATCATCAATATCATTTATCCTAAC
453 ATCGTCAATATCATTTATCCTAAC
12341 GAAAAG
1 GAAAAG
Statistics
Matches: 10741, Mismatches: 969, Indels: 325
0.89 0.08 0.03
Matches are distributed among these distances:
469 18 0.00
470 21 0.00
471 1028 0.10
472 641 0.06
473 1047 0.10
474 2014 0.19
475 2518 0.23
476 1740 0.16
477 782 0.07
478 487 0.05
479 214 0.02
480 192 0.02
481 39 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
GTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGAA
TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
TTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATC
GTCAATATCATTTATCCTAAC
Found at i:2450 original size:951 final size:950
Alignment explanation
Indices: 1--12346 Score: 17778
Period size: 951 Copynumber: 13.0 Consensus size: 950
* * *
1 GAAAAGAATGG-GTTTATAGTGCCGAATAACAAAAAGAATGAAGATCATTGCTACAATCCTTA-T
1 GAAAAGAA-GGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATT
*
64 TGTCTCATTTGAGGCGCGAAGTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAA
65 TGTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAA
* * * * *
129 TCCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATGTTTATGGTGCCTAATGCTGAAAAG
130 TCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAG
* *
194 AATGGGGATTAGTATGA-CTATTCATGTTTGTCTTAGTTAAGAGGCAAACTTTGATTCTAATAAA
195 AATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAA
* * *
258 AACGGTGGAAAGAAAACCTTTTCCTGCGACACCAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
259 AACGGTGGAAAGAAAACCTTTTCTTGCGACACAAAGCATCAATGTCTTGTATCCTAATGAAGGGA
* * * *
323 ATGGGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGCCTTAA
324 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAA
*
388 TTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAA
389 TTAAGGGATGAATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAA
* *
452 TCGTCAATACCATTTAT-CTAACGAAAAGAATGTGTTTATAGTGCCTAATCAGAAAAAGAATGAA
453 TCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCA-CAAAAGAATGAA
*
516 GATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATTGAG
517 GATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAG
* * *
581 TGAAGAAATACATTCTTGCTAATCCAAAGCGTCAATTTCGTCTATCCTAAAGAGTTGACTACGTT
582 TGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTT
* * *
646 TATGGTGCCTAATGCTGAAAAGAATGGTGATTAGTATTACTATTCATGTTTGTCTTATTTAGGAG
647 TATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* *
711 GCAAACTTTGATTCTAATAAAAACGGTGGGAAGAAAACCTTTTTTTGCGACACC-AA--ATCAAT
712 GCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
* *
773 GTCTTGTATCCTAAAAAAGGGAATGGGTTCTTAGTTCCCAATCTTG-AAAGAATGGAGACTATTG
777 GTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTG
* *
837 TGAGAATCAATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAA
842 CGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAA
** * *
902 TGATTTCCACACAAAAGAAAATCATCAATATCTTTTATCCTAAC
907 TGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* * *
946 GAAAAGAATGG-G-TTATAGTGCCGAATCACAAAAAAAATGAAGATCACTGCTAGAATCCTTATT
1 GAAAAGAA-GGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATT
* * * * *
1009 TGTCTCATTTGAGGCCCGAACTTAGACTTTAAATAAAATGGAGTGAAGAAATCCATTCTTGTGAT
65 TGTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAA
* * ** *
1074 TCCAAAGCGTCAATTTCATCTATACAAAAAGAG-TGACTACGTTGATGGTGCCTAATGCTGAAAA
130 TCCAAAGCATCAATTTCGTCTAT-CCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAA
* * * *
1138 CAATGGGGATTAGCATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGACTCTAAC-AA
194 GAATGGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAA
* * * *
1202 AACAGTGGAATG-AAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAAGGAAGGG
259 AACGGTGGAAAGAAAACCTTTTCTTGCGACAC-AAAGCATCAATGTCTTGTATCCTAATGAAGGG
* * *
1266 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATTGATGAATGTCATA
323 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATA
* * *
1331 ATTAAGGGATGAATTTTTATTTTAAGGAAAATAAGGCAAAGAAATGATTTCCATACAAAAGAAAA
388 ATTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAA
* * * * * *
1396 TCGTCAATATCATTTACCCAAACGAAAAAAATGTGTTAATCGTGCCTAATCACAAATGAATGAAG
453 TCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAAGAATGAAG
* * * * *
1461 ATCTTTACTAGAATCCTTATTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAATGGAGT
518 ATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAGT
* * * * * *
1526 GAAGAAATACATTCTTGCGAATCCAAAGCATCAATTCCGTCTATCGTGATGAGTTGACTATGTTT
583 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTT
*
1591 ATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGAGG
648 ATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGG
1656 CAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
713 CAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
*
1721 TCTTGTATCCTAAAGAACGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGC
778 TCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGC
* * *
1786 GAGAATCGATGATTATC-TGAATTTAGGGATGAATTTTTTACTTTAGCAAAAATAGGGCAAAGAA
843 GAGAATCGATGATTGTCAT-AATTTAGGGATGAA-TTTTTATTTTAGCGAAAATAGGGCAAAG-A
* *
1850 AATGATTTCCATGC-AAAGGAAATTGTCAATATCATTTATCCTAAC
905 AATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
1895 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTA-TT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
1959 GCCTCATTTGAGGCGCG-ACTTAGAC-TTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
2022 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATAGTGCCTAATGCTGAAATGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
*
2087 ATGGGGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTAACAAA
196 AT--GGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAA
* * *
2152 AACGGTGGAAAGAAAACCTTTTCTTGCGATAAGCAAAGCATCAATATCATGTATCCTAATGAAGG
259 AACGGTGGAAAGAAAACCTTTTCTTGCGA-CA-CAAAGCATCAATGTCTTGTATCCTAATGAAGG
* * * *
2217 GAATGGGTTC-TAGTTCCCAATCTTGAAACGAATGGAAACTTTTACGAGAATCGATGATTGTCAC
322 GAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT
* *
2281 AATTAAGGGATGGATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCGATGCAAAAGGAA
387 AATTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAA
*
2346 ATCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATGGTGCCTAATCACAAAAGAATGAA
452 ATCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAAGAATGAA
*
2411 GATCATTGCTAGAATCCTTATTTGCCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAG
517 GATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAG
*
2476 TGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACAACGTT
582 TGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTT
* * * *
2541 TACGATGCCTAATGCTGAAAACAATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAGAG
647 TATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* *
2606 GCAAACTTTGATTCTAATAAAAACGGTGGAATGAAAACCTTTTCCTGCGACACCAAAGCATCAAT
712 GCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
*
2671 GTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTG
777 GTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTG
* *
2736 CGAGAATCGATGATTGCCTTAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGGCAAAGAA
842 CGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATA-GGGCAAAGAA
* *
2801 ATGATTTCCATGCAAAAGGAAATCGTCAATACCATTTAT-CTAAC
906 ATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* *
2845 GAAAAGAATGTGTTTATAGTGCCTAATCAGAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * *
2910 GTCTCATTTGAGGTGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATACATTCTTGCTAAT
66 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* *
2975 CCAAAGCGTCAATTTCGTCTATCCTAAAGAGTTGACTACGCTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * *
3040 ATGGTGATTAGTAT-TACTATTCATGTTTGTCTTATTTAGGAGGCAAACTTTGATTCTAATAAAA
196 ATGGGGATTAGTATAT-CTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAA
* *
3104 ACGGTGGGAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACA-CAAAGCATCAATGTCTTGTATCCTAATGAAGGGA
* ** *
3169 ATGGGTTCTTAGTTCCCAATCTTG-AAAGAATGGAGACTATTGTGAGAATCAATGATTGTCATAA
324 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAA
* * ** *
3233 TTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGTAAAGAAATGATTTCCACACAAAAGAAAA
389 TTAAGGGATGAATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAA
* * * * * *
3297 TCATCAATATCTTTTATCCTAACGAAAAGAATGGGTTTATATTGCCGAATCACAAAATAAATGAA
453 TCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-GAATGAA
* * * * *
3362 GATCACTGCTAGAATCCTTATTTGTCTCATTTGAGGCCCGAACTTAGACTTTAAATAAAATGGAG
517 GATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAG
* * *
3427 TGAAGAAATCCATTCTTGTGATTCCAAAGCATCAATTTCGTCTATCCAAAAGAGTTGACTACGTT
582 TGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTT
* * * *
3492 GATGGTGCCTAATGCTGAAAAACAATGGGGATTAGCATGTCTATTCATGTTTGTCTTATTTAAGA
647 TATGGTGCCTAATGCTG-AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * * *
3557 GGCAAACTTTGACTCTAACAAAAACGGTGGAATGAAAACCTTTTCTTGCGACACTAAAGCATCAA
711 GGCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
* * * *
3622 TGTCATGTTTCCTAAGGAAGGGAATGGGTTCTTAGTTCCCAATCTTG-AAAGAATAGAGACTGTT
776 TGTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * *
3686 ACTAGAATTGATGAATGTCATAATTAAGGGATGAATTTTTATTTTAAG-GAAAATAAGGCAAAGA
841 GCGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGA
* * *
3750 AATGATTTCCATACAAAAGAAAATCGTCAATATCATTTACCCAAAC
905 AATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* * * * * *
3796 GAAAAGAATGTGTTAATCGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCTTATTT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * * *
3861 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAATGGAGTGAAGAAATACATTCTTGCGAAT
66 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * *
3926 CCAAAGCATCAATTCCGTCTATCGTGATGAGTTGACTATGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAG-
* *
3991 AATGGGGATTAGTATGA-CTATTCATGTTTGTCTTAGTTAAGAGGCAAACTTTGATTCTAATAAA
195 AATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAA-CAA
4055 AAACGGTGGAAAGAAAACCTTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA-GAA-
258 AAACGGTGGAAAGAAAACC-TTTTCTTGCGACA-CAAAGCATCAATGTCTTGTATCCTAATGAAG
* *
4118 GGAATGGGTTCTTAGTTCCC-ATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTATC-
321 GGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCA
* * *
4181 TGAATTTAGGGATGAATTTTTACTTT-AGCAAAAATAGGGCAAAGAAATGATTTCCATGCAAAAG
386 T-AATTAAGGGATGAATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCCATGCAAAAG
* *
4245 GAAATTGTCAATATCATTTATCCTAACGAAAAGAAGGTG-TTATAGTGCCTAATCACAAAAAGAA
449 GAAATCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCAC-AAAAGAA
* *
4309 TGAAGATCATTGCTAGAATCCTTATTTGCCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAAT
513 TGAAGATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAAT
4374 TGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTA
578 TGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTA
* *
4439 CGTTTATAGTGCCTAATGCTGAAATG-ATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTT
643 CGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTT
* * *
4502 AAAAGGCAAACTTTGATTCTAACAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACAGCAAAGCA
707 AAGAGGCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCA
* * * * *
4567 TCAATATCATGTATCCTAATGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAACGAATGGAAAC
772 TCAATGTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * *
4632 TTTTACGAGAATCGATGATTGGTCACAATTAAGGGATGGATTTTTATTTTAAG-GAAAATAGGGC
837 TGTTGCGAGAATCGATGATT-GTCATAATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGC
* *
4696 AAAGAAATGATTTCGATGCAAAAGGAAATCGTCAATATCATTTATCCTAAC
900 AAAGAAATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* *
4747 GAAAAGAATGTGTTTATGGTGCCTAATCACAAAAAGAATG-AGATCATTGCTAGAATCCTTATTT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* * *
4811 GCCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * *
4876 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACAACGTTTACGATGCCTAATGCTG-AAACA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* *
4940 ATGGGGATTAGTATGA-CTATTCATGTTTGTCTTAGTTAAGAGGCAAAC-TTGATTCTAATAAAA
196 ATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAA
* *
5003 ACGGTGGAAAGAAAACCTTTTCCTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGAAGGGA
260 ACGGTGGAAAGAAAACCTTTTCTTGCGACA-CAAAGCATCAATGTCTTGTATCCTAATGAAGGGA
* * * *
5068 ATGGGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGCCTTAA
324 ATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAA
*
5133 TTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAA
389 TTAAGGGATGAATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAA
* *
5197 TCGTCAATACCATTTAT-CTAACG-AAAGAATGTGTTTATAGTGCCTAATCAGAAAAAGAATGAA
453 TCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCA-CAAAAGAATGAA
*
5260 GATCATTGCTAGAATCCTTA-TTGTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATTGAG
517 GATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAG
* * * *
5324 TGAAGAAATACATTCTTGCTAATCCAAAGCGTCAATTTCGTCTATCCTAAAGAGTTGACTACGCT
582 TGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTT
* * *
5389 TATGGTGCCTAATGCTGAAAAGAATGGTGATTAGTATTACTATTCATGTTTGTCTTATTTAGGAG
647 TATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
*
5454 GCAAACTTTGATTCTAATAAAAACGGTGGAGAAGAAAACCTTTTTTTGCGACACCAAAGCATCAA
712 GCAAACTTTGATTCTAATAAAAACGGTGGA-AAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
*
5519 TGTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTATT
776 TGTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * *
5584 GTGAGAATCAATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGTAAAGAA
841 GCGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAA
** * *
5649 ATGATTTCCACACAAAAGAAAATCATCAATATCTTTTATCCTAAC
906 ATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* * *
5694 GAAAAGAATGG-GTTTATATTGCCGAATCACAAAATA-AATGAAGATCACTGCTAGAATCCTTAT
1 GAAAAGAA-GGTGTTTATAGTGCCTAATCACAAAA-AGAATGAAGATCATTGCTAGAATCCTTAT
* * * *
5757 TTGTCTCATTTGAGGCCCGAACTTAGACTTTAAATAAAATGGAGTGAAGAAATCCATTCTTGTGA
64 TTGTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGA
* * *
5822 TTCCAAAGCATCAATTTCGTCTATCCAAAAAGAGTTGACTACGTTGATGGTGCCTAATGCTGAAA
129 ATCCAAAGCATCAATTTCGTCTATCC-TAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAA
* * * *
5887 ACAATGGGGATTAGCATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGACTCTAACAA
193 AGAATGGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAA
* *
5952 AAACGGTGGAATGAAAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAA-GAAAG
258 AAACGGTGGAAAGAAAACCTTTTCTTGCGACAC-AAAGCATCAATGTCTTGTATCCTAATG-AAG
* * *
6016 GGAATGGGTTCTTAGTTCCCAATCTTGGAAAAGAATAGAGACTGTTACGAGAATTGATGAATGTC
321 GGAATGGGTTCTTAGTTCCCAATCTT-GAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTC
* * *
6081 ATAATTAAGGGATGAATTTTTATTTTAAGGAAAATAAGGCAAAGAAATGATTTCCATACAAAAGA
385 ATAATTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGG
* * * *
6146 AAATCGTCAATATCATTTACCCCAAACGAAAAGAATGTGTTAATCGTGCCTAATCACAAAATGAA
450 AAATCGTCAATATCATTTA-TCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-GAA
* * *
6211 TGAAGATCTTTACTAGAATCCTTATTTGTCTTATTTGAGGCACGAACTTAGACTTTACAGAAAAT
513 TGAAGATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAAT
* * * *
6276 TGAGTGAAGAAATACATTCTTGCTAATCCAAAGCGTCACTTTCGTCTATCCTAAAGAGTTGACTA
578 TGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTA
* *
6341 CGTTTAT-GTGCCTAATGCTGAAAAGAATGGTGATTAGTATTACTATTCATGTTTGTCTTATTTA
643 CGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
*
6405 GGAGGCAAACTTTGATTCTAATAAAAAC-GTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCAT
708 AGAGGCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCAT
6469 CAAATGTTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGA
773 C-AATG-TCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGA
* * *
6534 CTGTTGCGAGAATCGATGATTATC-TGAATTTA-GGATGAA-TTTTACTTTAGCAAAAATAGGGC
836 CTGTTGCGAGAATCGATGATTGTCAT-AATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGC
6596 AAAGAAATGATTTCCATGCAAAA-AGAAATCGTCAATATCATTTATCCTAAC
900 AAAGAAATGATTTCCATGCAAAAGA-AAATCGTCAATATCATTTATCCTAAC
6647 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
*
6712 GTCTCATTTGAGGCGCGAACTTAGACTTTTTACAGAAAATTGAGTGAAGAAATCCATTCTTGCGA
66 GTCTCATTTGAGGCGCGAACTTAGAC--TTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGA
* *
6777 ATCCCAAAGCATCAATTTCGTCTTATCCTAAAGAGTTGACTACATTTATAGTGCCTAATGCTGAA
129 AT-CCAAAGCATCAATTTCGTC-TATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAA
* *
6842 ATGAATGGGGATTAGTATATCTATGTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTAAC
192 AAGAATGGGGATTAGTATATCTAT-TCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAAC
* *
6907 AAAAACGGTGGAAAGAAAACCTTTTCTTGCGACAGCAAAGCATCAATATCATGTATCCTAATGAA
256 AAAAACGGTGGAAAGAAAACCTTTTCTTGCGACA-CAAAGCATCAATGTCTTGTATCCTAATGAA
* * *
6972 GGGAATGGGTTC-TAGTTCCCAATCTTGAAACGAATGGAAACTTTTACGAGAATCGATGATTGTC
320 GGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTC
* * *
7036 AAAATTAAGGGATGGATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCAAGCAAAA-G
385 ATAATTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGG
* *
7100 AAACTCGTCAATATCATTTATCC-ATATGAAAAGAATGTGTTTATGGTGCCTAATCACAAAAAGA
450 AAA-TCGTCAATATCATTTATCCTA-ACGAAAAGAATGTGTTTATAGTGCCTAATCAC-AAAAGA
* * *
7164 ATGAAGATCATTGCTAGAATCCTTATTTGCCTCATTTGAGGCGCGAACCTA-ACTTTACAGAAAA
512 ATGAAGATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAA
*
7228 TTGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACG
577 TTGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACT
* * * * *
7293 ATGTTTACGATGCCTAATGCTGAAAACAATGGGGATTAGTATGTCTATTCATGTTTGTCTTATTT
642 ACGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* ** * *
7358 AAGTGGTGAACTTTGATTCTAACAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACC-AAGCA
707 AAGAGGCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCA
* *
7422 TCAATGTCTTGTATCCTAATGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGTGAC
772 TCAATGTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * * * *
7487 TGTTACGAGAATTGATTACTGTCATAATTAAGGGATGAAATTTTTAATTTAGGGAAAATAGGGGA
837 TGTTGCGAGAATCGATGATTGTCATAATTTAGGGATG-AATTTTTATTTTAGCGAAAATAGGGCA
* *
7552 AAGAAAATGATTTCCACGCAAAAG-AAATCATCAATATCATTTATCCTAAC
901 AAG-AAATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* * * * * * *
7602 GAAAAGACTGG-ATTTATAGTTCCTAATCACAAAATGAATGAAGATCTTTACTAGAATCGTTATT
1 GAAAAGA-AGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATT
*
7666 TGTCTCATTTGAGGCACGAACTTAGACTTTACAG-AAATGGAGTGAAAGAAATCCATTCTTGCGA
65 TGTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTG-AAGAAATCCATTCTTGCGA
* * * * * *
7730 ATCCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATGTTTATGGTGCCTAATGTTGAAAA
129 ATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAA
* *
7795 GAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTTAGAGGCAAACTTTGATTCT-A-AT
194 GAATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAA
* * * *
7857 AAACGGTGGAAAGAAAACCTTTTCCTGTGACACCAAGCATCAATGTCTTGTATCCTAATGGAGGG
258 AAACGGTGGAAAGAAAACCTTTTCTTGCGACACAAAGCATCAATGTCTTGTATCCTAATGAAGGG
* * * *
7922 AATAGGTTCTTAGTTCCCAATCTTGAAAAGAATGGACACTGTTACGAGCATCGATGAATGTCATA
323 AATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATA
* * * * *
7987 ATTAAGGGTTTAATTTTTCTTTTTAAGGAAAATAAGGCAAAGAAATGATTTCCATGCAAAAAGAA
388 ATTAAGGGATGAATTTTT-ATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGC-AAAAGGA
* * * *
8052 AATCATCAATATCATTAATCCTAACCAAAAGAATGTGTTAATAGTGCCTAATCACAAAATGAATG
451 AATCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-GAATG
* * * *
8117 AAGATCTTTACTAGAATCCTTATTTGTCTCATTTGAGGCACGACCTTAGACTTTACAGAAAATGG
515 AAGATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTG
* * * * * *
8182 AGTGAAGAAATCCATTCTTGTGAATCCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATG
580 AGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACG
* * *
8247 TTTATGGTGACTAATGCTG-AAAGAATAGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAG
645 TTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
*
8311 AGGCAAACTTTGATTCTAATAAAAACGGTGGAAAAGGAAACCTTTTCTTGCGACACCAAAGCATC
710 AGGCAAACTTTGATTCTAATAAAAACGGTGG-AAAGAAAACCTTTTCTTGCGACACCAAAGCATC
* *
8376 AATGTCATGTATCCTAATGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTG
774 AATGTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * *
8441 TTACGAGAATCGATGATCGTCATAATTAAGGGTTGAATTTTTATTTTAAG-GAAAATAAGGCAAA
839 TTGCGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTT-AGCGAAAATAGGGCAAA
*
8505 GAAATGATTTCCATGCAAAAAAAAAAT-GATC-ATATCA-TTATCCTAAC
903 GAAATGATTTCCATGC-AAAAGAAAATCG-TCAATATCATTTATCCTAAC
* * * * *
8552 GAAAAGAATGTGTTAATAGTGCCTAATCAC-AAATGAATGAAGATCTTTACTAGAATCCTTATTT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
8616 GTCTCATTTGAGGCACGACCTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
66 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * * * *
8681 CCAAAGCATCAATTCCATCTATCCTGATGAGTTGACTATGTTTTATGGTGCCTAATGCTAAAAAG
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACG-TTTATGGTGCCTAATGCTGAAAAG
* * *
8746 AATGGGGAATTAGTCTGA-CTATTCATGTTTGTCTTATTTTAGAGGCAAACTTTGATTCTAA-TA
195 AATGGGG-ATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAA
* * * *
8809 AAACGGTGGAAAGAAAACCTTTTCCTGTGACACCAAAGCATCAATGTCTTGTATCCTAAAGGAGG
258 AAACGGTGGAAAGAAAACCTTTTCTTGCGACA-CAAAGCATCAATGTCTTGTATCCTAATGAAGG
* * *
8874 AAATAGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTGTC-T
322 GAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT
* * *
8938 GAATTTAGGGATGAATTTTTACTTT-AGCAAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGG
387 -AATTAAGGGATGAATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGG
* * *
9002 AAATCGTCAATATCATTTATCCTTACGAAAAGAATGTGTTTATAGTGCCGAACCACAAAATGAAT
450 AAATCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-GAAT
* * * *
9067 GCAGATCATTACTAGAATCCTTATTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAAATG
514 GAAGATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATT
* * * * * ** *
9132 GAGTGAAGAAATGCATTCCTACGAATCCAAAGCTTCAATTTCATCTATCCTATTGAGTTGGA-AA
579 GAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTT-GACTA
* * * *
9196 TGTTCATGGTGCCTAATGCTAAAAAGAATGGGGATTAGTATGACTATTCAGGTTTGTCTTATTTA
643 CGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* *
9261 ATAGGCAAACTTTGATTCTAA-CAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCAT
708 AGAGGCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCAT
* * *
9325 CATTATCATGTATCCTAATA-AAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGA-AG
773 CAATGTCTTGTATCCTAA-AGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGA-
* * * * *
9388 CTGTTACGAGAATCGATGATTGCCATAATTAAGGGATGGATTTTTATTTTA-AGAAAATAGGGCA
836 CTGTTGCGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCA
* *
9452 AAGAAATGATTTCCATGCAAAAGAAAATCGTCAATATCCTGTATCCTAAC
901 AAGAAATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* * * * *
9502 GAAAAGAA--TGTTTATAGCGTCGAATCACAAAATGAATGAAGATCATTGATAGAATCCTTATTT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
9565 GTCTCATTTGAGGCCCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGTGAAT
66 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
* * * *
9630 CCAAAGCATCAATTTCGTCTATCCTAGAGAGTTGACTACATTTATGGTGCCTAATGTTGAAAACA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* * * * * *
9695 ATGGGGATTAGCATGTCTATTCGTGTTTGTCTTATTTAAGAGGTAAAATTTGACTCTAACAAAAA
196 ATGGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAA
* * * * * *
9760 TGGTGCAATGAAAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAAGGAAGGGAG
261 CGGTGGAAAGAAAACCTTTTCTTGCGACAC-AAAGCATCAATGTCTTGTATCCTAATGAAGGGAA
* * *
9825 TGGGTTCTTAGTTCCCAATCTTGAAAAGACA--GAGACTGTTATGAGAATTGATGAATGTCATAA
325 TGGGTTCTTAGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTACGAGAATCGATGATTGTCATAA
* * * *
9888 TTAAGGGATGAATTTTTATTTCAAGGAAAATAAGGCAAAGAAATGATTTCCATACAAAAGAAAAT
389 TTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAAT
* * * *
9953 CGTCAATATCGTTT-TCCCAAACGAAAAGAATGTGTTAATCGTGCCTAATCACAAAATGAATGAA
454 CGTCAATATCATTTAT-CCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-GAATGAA
* * * *
10017 GATCTTTACTAGAATCCTTTTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATGGAG
517 GATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAG
* * * * *
10082 TGAAGAAATACATTCTTGCGAATCCAAAGCATCAATTCCGTCTATCCTGATGAGTTGACTATGTT
582 TGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTT
* * *
10147 TATGGTGCCTAATGCAGAAAAGAATGGGGATTAGTATGGCTATTCATG-TTGTCTTAGTTAAGAG
647 TATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* *
10211 GCAAACTTTGATTCTAATAAAAATGATGGAAAGAAAACC-TTTCTTGCGACACCAAAGCATCAAT
712 GCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
*
10275 GTCTTGTAACCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTG
777 GTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTG
*
10340 CGAGAATCGATGATTATC-TGAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAA
842 CGAGAATCGATGATTGTCAT-AATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAA
* *
10404 ATGATTTCCATGCAAAAGGAAATCGTCGATATCATTTATCCTAAC
906 ATGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
*
10449 GAAAAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
1 GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
* *
10514 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATTGAGTGAAGAAATCCATTTTTGCGAAT
66 GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
10579 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
131 CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
* *
10644 ATGGGGATTAGTATGTCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAATAAAAA
196 ATGGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAA
*
10709 CGGT-G---G-AAACCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTACCCTAATGAAGGGAA
261 CGGTGGAAAGAAAACCTTTTCTTGCGACA-CAAAGCATCAATGTCTTGTATCCTAATGAAGGGAA
* * *
10769 TGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACTGTTGCGAGAATCGATGATTTTCATAAT
325 TGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAAT
* * * * *
10834 TTAGCGATGAATTTTTGTTTT-AGCGAAAATAGGGCAAAGAAATGATTTCCACGCAAAAGAAAAT
390 TAAGGGATGAATTTTTATTTTAAG-GAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAAT
* *
10898 CATCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAATATGAATGAAG
454 CGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAA-AAGAATGAAG
* **
10963 ATCATTGCTAGAATCTTTATTTGTCTCATTTGAGGTGCGAACTTAGACTTTACAGAAAATTGAGT
518 ATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAGT
* *
11028 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCTTCTATCCTAAAGTGTTGACTACGTTT
583 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTT
11093 ATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTAT-ATCTATTCATGTTTGTCTTATTTAAGAG
648 ATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAG
* * * * *
11157 GCAAACTTTAATTCTAACAAAAA-GGTGGAAAGAAAACCTTTTCATGCGACACTAAAGCATCAAC
712 GCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
* ** * * *
11221 GTCATGTATCCTAGTGATGGGAATGGGTTCTTTGTTCCCAATCGTGAAAAGAATGGAGACTGTTG
777 GTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTG
11286 CGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAA
842 CGAGAATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAA
** *
11351 TGATTTCCACACAAAAGAAAATCATCAATATCATTTATCCTAAC
907 TGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
* * *
11395 GAAAAGAATGG-GTTTATAGTGCCGAATCA-AAATA-AATGAAGATCACTGCTAGAATCCTTA-T
1 GAAAAGAA-GGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATT
* * * * * *
11456 T-TCACATTTGAGGCCCGAACTTAGACTTTGCATAAAATGGAGTGAAGAAATCCATTCTTGTGAT
65 TGTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAA
* *
11520 TCCAAAGCATCAATTTCGTCTATCCAAAAAGAGTTGACTACGTTGATGGTGCCTAATGCTGAAAA
130 TCCAAAGCATCAATTTCGTCTATCC-TAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAA
* * * * *
11585 CAATGGGGATTAGCATGTCTATTCATGTTCGTCTTATTTAAGAGGCAAACTTTGACTCTAACAAA
194 GAATGGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAA
* * *
11650 AACGGTGGAATGAAAACCTTTTCTTGCGACACTAAAGCATCAAT-TACATGTATCCTATTGAAGG
259 AACGGTGGAAAGAAAACCTTTTCTTGCGACAC-AAAGCATCAATGT-CTTGTATCCTAATGAAGG
* * * *
11714 GAATGGGTTCTTAGTTGCCAATCTAGAAAAGAATGGAAACTATTACGAGAATCGATGATTGTCAT
322 GAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCAT
* * *
11779 AATTATGGGATGGATTTTTATTTGAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAA-GAA
387 AATTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAA
* * *
11843 ATCGTCAATATCATTTTTCCTAGCGAAAAGAATGTGTTTATAGTGCCGAATCACAAAATGAATGA
452 ATCGTCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAA-GAATGA
* * * * *
11908 AGATCACTACTAGAATCCTTATTTGTCTCATTTGAGGCATGAACTTAGACTTTACAGAGAATGGA
516 AGATCATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGA
* * *
11973 GTGAAGAAATCCATTCTTGCGAATCTAAAGCATCAATTTCTTCTATCCTAAAGAGTTGA-TAACA
581 GTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACT-ACG
* * * * *
12037 TTGATGATGCCTAATGCTTAAAACAATGGGGATTAGTATGTCTATTCATGTTTGTCTTATTTAAG
645 TTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
*
12102 AGGCAAACTTTGATTCTAACAAAAACGG-GGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCA
710 AGGCAAACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCA
* * * *
12166 ATGTCTTGTATCCTAATGAAGGGAACGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGTGCCTGT
775 ATGTCTTGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * * * * *
12231 TACGAGAATTGAAT-ATTGTCATAATTAAGGGATGGATTTTTATTTTAGGGAAAACA-GGCAAGG
840 TGCGAGAATCG-ATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAG
*
12294 AAATGATTTCCACT-CAAAAGAAAATCATCAATATCATTTATCCTAAC
904 AAATGATTTCCA-TGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
12341 GAAAAG
1 GAAAAG
Statistics
Matches: 10316, Mismatches: 915, Indels: 339
0.89 0.08 0.03
Matches are distributed among these distances:
942 80 0.01
943 124 0.01
944 561 0.05
945 569 0.06
946 628 0.06
947 1258 0.12
948 831 0.08
949 878 0.09
950 1040 0.10
951 1888 0.18
952 854 0.08
953 525 0.05
954 230 0.02
955 520 0.05
956 214 0.02
957 114 0.01
958 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (950 bp):
GAAAAGAAGGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCTTATTT
GTCTCATTTGAGGCGCGAACTTAGACTTTACAGAAAATGGAGTGAAGAAATCCATTCTTGCGAAT
CCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATGGTGCCTAATGCTGAAAAGA
ATGGGGATTAGTATATCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAA
CGGTGGAAAGAAAACCTTTTCTTGCGACACAAAGCATCAATGTCTTGTATCCTAATGAAGGGAAT
GGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGATTGTCATAATT
AAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGGAAATCG
TCAATATCATTTATCCTAACGAAAAGAATGTGTTTATAGTGCCTAATCACAAAAGAATGAAGATC
ATTGCTAGAATCCTTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAAATTGAGTGAA
GAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAAGAGTTGACTACGTTTATG
GTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAA
ACTTTGATTCTAATAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCT
TGTATCCTAAAGAAGGGAATGGGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTGCGAG
AATCGATGATTGTCATAATTTAGGGATGAATTTTTATTTTAGCGAAAATAGGGCAAAGAAATGAT
TTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAAC
Done.