Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold96
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1013983
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 1 of 8
Found at i:2126 original size:1 final size:1
Alignment explanation
Indices: 2106--2208 Score: 71
Period size: 1 Copynumber: 103.0 Consensus size: 1
2096 GGCGTCCTCC
* * * * * * * * **
2106 AAAAAACAAACAAAACAAAAAAAAACAAAAAAACAAAAAAAAAACACAAAAAAAAAAACAAAACC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
2171 AAAAACAAAAACAAAAAAAACAAACAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2209 GGGGGTCCGG
Statistics
Matches: 74, Mismatches: 28, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 74 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:2130 original size:19 final size:19
Alignment explanation
Indices: 2106--2208 Score: 106
Period size: 19 Copynumber: 5.2 Consensus size: 19
2096 GGCGTCCTCC
2106 AAAAAACAAACAAAACAAA
1 AAAAAACAAACAAAACAAA
2125 AAAAAACAAA-AAAACAAAA
1 AAAAAACAAACAAAAC-AAA
2144 AAAAAACACAA-AAAA-AAA
1 AAAAAACA-AACAAAACAAA
2162 AACAAAACCAAAAACAAAA-ACAA
1 AA-AAAA-C--AAACAAAACA-AA
2185 AAAAAACAAACAAAAACAAA
1 AAAAAACAAAC-AAAACAAA
2205 AAAA
1 AAAA
2209 GGGGGTCCGG
Statistics
Matches: 74, Mismatches: 0, Indels: 19
0.80 0.00 0.20
Matches are distributed among these distances:
18 10 0.14
19 29 0.39
20 17 0.23
21 4 0.05
22 10 0.14
23 4 0.05
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAACAAACAAAACAAA
Found at i:2158 original size:31 final size:30
Alignment explanation
Indices: 2120--2208 Score: 117
Period size: 31 Copynumber: 2.9 Consensus size: 30
2110 AACAAACAAA
2120 ACAAAAAAAAACAAAAAAACAAAAAAAAAAC
1 ACAAAAAAAAA-AAAAAAACAAAAAAAAAAC
*
2151 ACAAAAAAAAAAACAAAACCAAAAACAAAAAC
1 ACAAAAAAAAAAA-AAAAACAAAAA-AAAAAC
*
2183 A-AAAAAAACAAACAAAAACAAAAAAA
1 ACAAAAAAA-AAAAAAAAACAAAAAAA
2209 GGGGGTCCGG
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
30 4 0.08
31 38 0.73
32 10 0.19
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (30 bp):
ACAAAAAAAAAAAAAAAACAAAAAAAAAAC
Found at i:3696 original size:30 final size:30
Alignment explanation
Indices: 3647--3906 Score: 142
Period size: 30 Copynumber: 8.7 Consensus size: 30
3637 TTTATCACCC
*
3647 TTCAAAAGTCCACAAGTCAGTGGCATTTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-TTTTT
*
3678 TTC-AAAGCCCACGAGTCAGTGGCATTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCATTTTT
* ***
3707 TTCAAAAGCCCACAAGTTAGTGGCA--ACC
1 TTCAAAAGCCCACAAGTCAGTGGCATTTTT
* **
3735 TTC-AAAGCCCACAAATCAGTGGCACCCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-TTTTT
* * * * *
3765 TTC-GAAGCCCACAAGTCGGCGGC-CTCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATTTTT
* * * *
3793 TTCCAAAGCTCACAACTCTA-TAGCACTCTTTTT
1 TTCAAAAGCCCACAAGTC-AGTGGCA---TTTTT
*** * ***
3826 CTTTTTAAGCCCACAAGTTAGTGGCACCCTT
1 -TTCAAAAGCCCACAAGTCAGTGGCATTTTT
***
3857 TTCAAAAGCCCACAAGTCAGTGGCA-ACCT
1 TTCAAAAGCCCACAAGTCAGTGGCATTTTT
3886 TT-AAAAGCCCACAAGTCAGTG
1 TTCAAAAGCCCACAAGTCAGTG
3907 ATGCAAACCT
Statistics
Matches: 175, Mismatches: 42, Indels: 27
0.72 0.17 0.11
Matches are distributed among these distances:
27 19 0.11
28 28 0.16
29 25 0.14
30 78 0.45
31 5 0.03
33 4 0.02
34 16 0.09
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (30 bp):
TTCAAAAGCCCACAAGTCAGTGGCATTTTT
Found at i:3755 original size:27 final size:27
Alignment explanation
Indices: 3711--3763 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
3701 ATTTTTTTCA
* *
3711 AAAGCCCACAAGTTAGTGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCAACCTTC
*
3738 AAAGCCCACAAATCAGTGGCACCCTT
1 AAAGCCCACAAATCAGTGGCAACCTT
3764 TTTCGAAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (27 bp):
AAAGCCCACAAATCAGTGGCAACCTTC
Found at i:3929 original size:32 final size:28
Alignment explanation
Indices: 3832--3930 Score: 117
Period size: 30 Copynumber: 3.3 Consensus size: 28
3822 TTTTCTTTTT
* *
3832 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCAACC--TTCAA
*
3862 AAGCCCACAAGTCAGTGGCAACCTTTAA
1 AAGCCCACAAGTCAGTGGCAACCTTCAA
3890 AAGCCCACAAGTCAGTGATGCAAACCTCTCAA
1 AAGCCCACAAGTCAGTG--GC-AACCT-TCAA
3922 AAGCCCACA
1 AAGCCCACA
3931 CAAGTTGGTG
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
28 21 0.34
30 23 0.38
31 5 0.08
32 12 0.20
ACGTcount: A:0.35, C:0.31, G:0.16, T:0.17
Consensus pattern (28 bp):
AAGCCCACAAGTCAGTGGCAACCTTCAA
Found at i:4019 original size:48 final size:48
Alignment explanation
Indices: 3950--4177 Score: 211
Period size: 48 Copynumber: 4.7 Consensus size: 48
3940 GGCGTCTCCT
*
3950 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTGC-C
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-CAC
*
3998 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA-C
** * * * * *
4047 ATCTCTAAAACCCAATGA-CGCTAGTCATGAATCAGCACATTGGCA----C-C
1 -T-T-T-AAGTCCAAT-ATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAC
4094 -TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CA-C
*
4145 TTTAAGTTCAATATAGCTGGCCTTGAATCAGCA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCA
4178 CGTTGACATC
Statistics
Matches: 145, Mismatches: 17, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
41 1 0.01
42 29 0.20
43 1 0.01
44 1 0.01
47 2 0.01
48 43 0.30
49 3 0.02
50 1 0.01
51 2 0.01
52 32 0.22
53 29 0.20
54 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (48 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAC
Found at i:4033 original size:22 final size:22
Alignment explanation
Indices: 3960--4035 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
3950 TTTAAGCCCA
*
3960 ATATAGCTGGCCTTGAATCAGC
1 ATATTGCTGGCCTTGAATCAGC
* *
3982 ATATTGGCACCTTGCCTTTAAGTC--C
1 ATATT-G---CTGGCCTTGAA-TCAGC
4007 AATATTGCTGGCCTTGAATCAGC
1 -ATATTGCTGGCCTTGAATCAGC
4030 ATATTG
1 ATATTG
4036 GCACCTTCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 16
0.66 0.08 0.26
Matches are distributed among these distances:
21 2 0.05
22 19 0.46
23 2 0.05
25 2 0.05
26 14 0.34
27 2 0.05
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (22 bp):
ATATTGCTGGCCTTGAATCAGC
Found at i:4172 original size:52 final size:53
Alignment explanation
Indices: 4094--4245 Score: 189
Period size: 52 Copynumber: 2.8 Consensus size: 53
4084 CATTGGCACC
4094 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CATCT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCATCT
* ** *
4146 TTAAGTTCAATATAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCATCT
* * * * * *
4201 TTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
4246 ATCACTTTTC
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
52 36 0.43
53 5 0.06
54 6 0.07
55 36 0.43
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (53 bp):
TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCATCT
Found at i:5130 original size:13 final size:13
Alignment explanation
Indices: 5112--5136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5102 CATAAAGTGT
5112 TGTATCGATACAA
1 TGTATCGATACAA
5125 TGTATCGATACA
1 TGTATCGATACA
5137 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5134 original size:33 final size:33
Alignment explanation
Indices: 5092--5158 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
5082 TTCAACGATT
5092 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
5125 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
5158 T
1 T
5159 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:5217 original size:13 final size:13
Alignment explanation
Indices: 5199--5223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5189 ATCACTTAAA
5199 TGTATCGATACAT
1 TGTATCGATACAT
5212 TGTATCGATACA
1 TGTATCGATACA
5224 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5288 original size:52 final size:52
Alignment explanation
Indices: 5232--5412 Score: 317
Period size: 52 Copynumber: 3.5 Consensus size: 52
5222 CACTGATCTT
* *
5232 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
5284 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* **
5336 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
5388 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
5413 TCATATTTCG
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 124 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:18756 original size:15 final size:15
Alignment explanation
Indices: 18738--18780 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
18728 TACTTTCCCC
18738 ACAATCATATTCCTA
1 ACAATCATATTCCTA
18753 ACAATCATATTCCTA
1 ACAATCATATTCCTA
* *
18768 AGAATCACATTCC
1 ACAATCATATTCC
18781 ATTGGAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.40, C:0.28, G:0.02, T:0.30
Consensus pattern (15 bp):
ACAATCATATTCCTA
Found at i:29451 original size:13 final size:13
Alignment explanation
Indices: 29433--29458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29423 TACACCAAGT
29433 ATGTATCGATACA
1 ATGTATCGATACA
29446 ATGTATCGATACA
1 ATGTATCGATACA
29459 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:33545 original size:15 final size:15
Alignment explanation
Indices: 33525--33555 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33515 TAAAAATGTC
*
33525 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
33540 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
33555 C
1 C
33556 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:35805 original size:20 final size:20
Alignment explanation
Indices: 35762--35807 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
35752 AAATCTTTTG
35762 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
35783 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
35803 CAAAA
1 CAAAA
35808 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:36125 original size:21 final size:20
Alignment explanation
Indices: 36083--36125 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
36073 GGCAGCACCA
* *
36083 CCAGGTCACGACTGGCACTC
1 CCAGGTCACAACGGGCACTC
*
36103 CCAGGTCACAACCGGGCAGTC
1 CCAGGTCACAA-CGGGCACTC
36124 CC
1 CC
36126 CACACTAGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.21, C:0.42, G:0.26, T:0.12
Consensus pattern (20 bp):
CCAGGTCACAACGGGCACTC
Found at i:44066 original size:13 final size:13
Alignment explanation
Indices: 44048--44072 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44038 CAATTTATTA
44048 TGTATCGATACAT
1 TGTATCGATACAT
44061 TGTATCGATACA
1 TGTATCGATACA
44073 ATATGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44166 original size:19 final size:20
Alignment explanation
Indices: 44122--44177 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
44112 CTGCCAGTTT
* *
44122 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGATA
44142 CATGTATCGATACAATGA-A
1 CATGTATCGATACAATGATA
*
44161 CATGTATCAATACAATG
1 CATGTATCGATACAATG
44178 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Found at i:50544 original size:13 final size:13
Alignment explanation
Indices: 50526--50551 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50516 ACATTTGGTC
50526 ATGTATCGATACA
1 ATGTATCGATACA
50539 ATGTATCGATACA
1 ATGTATCGATACA
50552 TCTTGTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:50546 original size:33 final size:32
Alignment explanation
Indices: 50504--50571 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
50494 CGTTACAAGC
50504 CAATGTATCGATACAT-TTGGTCATGTATCGATA
1 CAATGTATCGATACATCTT-GT-ATGTATCGATA
50537 CAATGTATCGATACATCTTGTATGTATCGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
50569 CAA
1 CAA
50572 ACAGTTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 14 0.41
33 18 0.53
34 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:50647 original size:19 final size:20
Alignment explanation
Indices: 50623--50672 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
50613 ATCTTTGCAA
*
50623 GTATCGATACAGTG-GTCAT
1 GTATCGATACAGTGCATCAT
* *
50642 GTATCGATACTGTGCATTAT
1 GTATCGATACAGTGCATCAT
50662 GTATCGATACA
1 GTATCGATACA
50673 TCTGAAGGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (20 bp):
GTATCGATACAGTGCATCAT
Found at i:54472 original size:23 final size:22
Alignment explanation
Indices: 54440--54494 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
54430 ATTTAAAATT
*
54440 TTTTATATTAAGATTTTTAT-AA
1 TTTTATATTAA-ATTTATATAAA
54462 TTTTATAATTAAATTTATATAAA
1 TTTTAT-ATTAAATTTATATAAA
*
54485 TTTTTTATTA
1 TTTTATATTA
54495 TTAAATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 17 0.59
23 12 0.41
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTTATATTAAATTTATATAAA
Found at i:54532 original size:15 final size:16
Alignment explanation
Indices: 54498--54536 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
54488 TTTATTATTA
*
54498 AATTATAATTTAATTT
1 AATTATAATTTAATTG
*
54514 AATTA-AATTTACTTG
1 AATTATAATTTAATTG
54529 AATTATAA
1 AATTATAA
54537 AAAATTACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (16 bp):
AATTATAATTTAATTG
Found at i:55393 original size:15 final size:15
Alignment explanation
Indices: 55373--55409 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
55363 TTATTTTTTT
55373 AATTTAATTATTTAA
1 AATTTAATTATTTAA
* *
55388 AATTTAGTTATTTTA
1 AATTTAATTATTTAA
55403 AATTTAA
1 AATTTAA
55410 ATTAATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
AATTTAATTATTTAA
Found at i:55711 original size:15 final size:16
Alignment explanation
Indices: 55670--55723 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
55660 TATTTTATTT
55670 TTATATAAAATTAATA
1 TTATATAAAATTAATA
55686 -TAT-TAATAATTAATA
1 TTATATAA-AATTAATA
*
55701 TTATATAAATTTTAA-A
1 TTATATAAA-ATTAATA
55717 TTATATA
1 TTATATA
55724 TTTTTATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 3 0.09
15 11 0.33
16 12 0.36
17 7 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTATATAAAATTAATA
Found at i:55739 original size:16 final size:17
Alignment explanation
Indices: 55720--55757 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
55710 TTTTAAATTA
*
55720 TATATTTTTATTA-TTT
1 TATATTTTAATTATTTT
55736 TATATTTTAATTATTTT
1 TATATTTTAATTATTTT
55753 TATAT
1 TATAT
55758 ATTATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATATTTTAATTATTTT
Found at i:55768 original size:19 final size:19
Alignment explanation
Indices: 55717--55768 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
55707 AAATTTTAAA
*
55717 TTATA-TATTTTTATTATT
1 TTATATTATATTTATTATT
* *
55735 TTATATTTTAATTATT-TT
1 TTATATTATATTTATTATT
55753 TATATATTATATTTAT
1 T-TATATTATATTTAT
55769 ACGATCATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATATTATATTTATTATT
Found at i:56714 original size:23 final size:23
Alignment explanation
Indices: 56675--56720 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
56665 TCAATAAATC
*
56675 AATTTATTTTTATTATAATTATT
1 AATTTATATTTATTATAATTATT
*
56698 AATTATATATTTA-TATATTTATT
1 AATT-TATATTTATTATAATTATT
56721 TTTGTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
AATTTATATTTATTATAATTATT
Found at i:57352 original size:17 final size:18
Alignment explanation
Indices: 57312--57352 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
57302 TATATTTTTA
*
57312 TAATT-TTTTTATAAAAT
1 TAATTATTTTAATAAAAT
57329 TAA-TATTTTAAT-AAAT
1 TAATTATTTTAATAAAAT
57345 TAATTATT
1 TAATTATT
57353 AAATTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTATTTTAATAAAAT
Found at i:57360 original size:29 final size:29
Alignment explanation
Indices: 57285--57362 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 29
57275 TATTATCATG
* *
57285 AAATTAA--ATTAATTTTATATATTTTTAT
1 AAATTAATTATTAAATTTA-ATATTTTAAT
* ** *
57313 AATTTTTTTA-TAAAATTAATATTTTAAT
1 AAATTAATTATTAAATTTAATATTTTAAT
57341 AAATTAATTATTAAATTTAATA
1 AAATTAATTATTAAATTTAATA
57363 ATATAATTTC
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
28 20 0.54
29 16 0.43
30 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
AAATTAATTATTAAATTTAATATTTTAAT
Found at i:57447 original size:23 final size:22
Alignment explanation
Indices: 57410--57452 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
57400 TAATTTAAAT
*
57410 TTTTTTCATATTATTAAATATA
1 TTTTTTAATATTATTAAATATA
*
57432 TTTTTTAATATATATTTAATA
1 TTTTTTAATAT-TATTAAATA
57453 ATTAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTTTAATATTATTAAATATA
Found at i:57534 original size:25 final size:24
Alignment explanation
Indices: 57484--57537 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
57474 AAAAAATTAA
*
57484 ATATTTTTAATTTATTCAAAATTTG
1 ATATTTATAATTTA-TCAAAATTTG
57509 ATATTTATAATTTA-CATAAATATTG
1 ATATTTATAATTTATCA-AAAT-TTG
57534 ATAT
1 ATAT
57538 AAAATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 2 0.08
24 4 0.15
25 20 0.77
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (24 bp):
ATATTTATAATTTATCAAAATTTG
Found at i:57579 original size:11 final size:10
Alignment explanation
Indices: 57534--57580 Score: 53
Period size: 9 Copynumber: 4.7 Consensus size: 10
57524 ATAAATATTG
57534 ATATAAAATAA
1 ATAT-AAATAA
*
57545 A-ATAATTAA
1 ATATAAATAA
57554 AT-TAAATAA
1 ATATAAATAA
57563 ATATAAATAA
1 ATATAAATAA
57573 TATATAAA
1 -ATATAAA
57581 AATTAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
9 14 0.45
10 9 0.29
11 8 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
ATATAAATAA
Found at i:57579 original size:17 final size:17
Alignment explanation
Indices: 57548--57593 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
57538 AAAATAAAAT
*
57548 AATTAAAT-TAAATAAA
1 AATTAAATATATATAAA
*
57564 TA-TAAATAATATATAAA
1 AATTAAAT-ATATATAAA
57581 AATTAAATATATA
1 AATTAAATATATA
57594 AATTTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
15 5 0.21
16 1 0.04
17 13 0.54
18 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AATTAAATATATATAAA
Found at i:57589 original size:15 final size:15
Alignment explanation
Indices: 57552--57595 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
57542 TAAAATAATT
* *
57552 AAATTAAATAAATAT
1 AAATTAAATATATAA
57567 AAA-T-AATATATAA
1 AAATTAAATATATAA
57580 AAATTAAATATATAA
1 AAATTAAATATATAA
57595 A
1 A
57596 TTTATTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 10 0.40
14 2 0.08
15 13 0.52
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATTAAATATATAA
Found at i:57597 original size:13 final size:13
Alignment explanation
Indices: 57534--57597 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
57524 ATAAATATTG
*
57534 ATATA-AAATAAA
1 ATATATAAATTAA
57546 ATA-ATTAAATTAA
1 ATATA-TAAATTAA
57559 ATAAATATAAA-TAA
1 AT--ATATAAATTAA
*
57573 TATATAAAAATTAA
1 -ATATATAAATTAA
57587 ATATATAAATT
1 ATATATAAATT
57598 TATTTAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
11 1 0.02
12 3 0.07
13 24 0.57
14 6 0.14
15 7 0.17
16 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATATATAAATTAA
Found at i:57853 original size:25 final size:27
Alignment explanation
Indices: 57806--57868 Score: 85
Period size: 25 Copynumber: 2.4 Consensus size: 27
57796 TGATGTTATT
*
57806 ATAAAAAATATTGTGAAAATTTAAAAA
1 ATAAAAAATATTATGAAAATTTAAAAA
*
57833 ATAAAAAAT-TTAT-AAATTTTAAAAA
1 ATAAAAAATATTATGAAAATTTAAAAA
*
57858 ATTAAAAATAT
1 ATAAAAAATAT
57869 AAATATAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.59
26 4 0.12
27 9 0.28
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (27 bp):
ATAAAAAATATTATGAAAATTTAAAAA
Found at i:57880 original size:25 final size:24
Alignment explanation
Indices: 57822--57882 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 24
57812 AATATTGTGA
57822 AAATT-TAAAAAATAAAAAATTTAT
1 AAATTATAAAAAATAAAAAA-TTAT
* *
57846 AAATTTTAAAAAATTAAAAA-TAT
1 AAATTATAAAAAATAAAAAATTAT
57869 AAA-TATAATAAAAT
1 AAATTATAA-AAAAT
57883 TATTTTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 4 0.12
23 11 0.33
24 5 0.15
25 13 0.39
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (24 bp):
AAATTATAAAAAATAAAAAATTAT
Found at i:59359 original size:21 final size:24
Alignment explanation
Indices: 59330--59380 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
59320 TATAATGTAT
59330 TAATATAAA-ACAATTTTT-TAAAA
1 TAAT-TAAATACAATTTTTATAAAA
*
59353 -AATTAAATATAATTTTTATAAAA
1 TAATTAAATACAATTTTTATAAAA
59376 TAATT
1 TAATT
59381 TTTTATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 11 0.46
23 5 0.21
24 4 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
TAATTAAATACAATTTTTATAAAA
Found at i:59388 original size:21 final size:22
Alignment explanation
Indices: 59364--59404 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
59354 ATTAAATATA
59364 ATTTTTATAAAATA-ATTTTTT
1 ATTTTTATAAAATATATTTTTT
*
59385 ATTTTTATTAAATATATTTT
1 ATTTTTATAAAATATATTTT
59405 ATATGTAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTTATAAAATATATTTTTT
Found at i:59444 original size:23 final size:23
Alignment explanation
Indices: 59418--59461 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
59408 TGTAGGAAAT
*
59418 TAAAGTTTTTAGTA-ATTTTTAAA
1 TAAAATTTTTA-TATATTTTTAAA
59441 TAAAATTTTTATATATTTTTA
1 TAAAATTTTTATATATTTTTA
59462 TTTTACTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (23 bp):
TAAAATTTTTATATATTTTTAAA
Found at i:59606 original size:18 final size:20
Alignment explanation
Indices: 59578--59618 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
59568 AAATTATTGA
*
59578 AATTATACATATAT-ATTAG
1 AATTATACATAAATCATTAG
59597 AATT-TACATAAATCATTAG
1 AATTATACATAAATCATTAG
59616 AAT
1 AAT
59619 GTAGGTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.39
Consensus pattern (20 bp):
AATTATACATAAATCATTAG
Found at i:59751 original size:21 final size:21
Alignment explanation
Indices: 59705--59752 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
59695 CAACAAATTG
*
59705 CATAAAAATATTATCAGTTTA
1 CATAAAAATATTATCAGGTTA
59726 CATAAAAATATTAT-AGAGTTA
1 CATAAAAATATTATCAG-GTTA
*
59747 TATAAA
1 CATAAA
59753 CATTAATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (21 bp):
CATAAAAATATTATCAGGTTA
Found at i:59859 original size:20 final size:18
Alignment explanation
Indices: 59818--59865 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
59808 TAAATTTTCA
* *
59818 AAATAATTTATATTTATT
1 AAATAATTTATATGTATG
59836 AAATATATTATATATGTATG
1 AAATA-ATT-TATATGTATG
59856 AAATTAATTT
1 AAA-TAATTT
59866 TTTATTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 14 0.56
21 2 0.08
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (18 bp):
AAATAATTTATATGTATG
Found at i:60564 original size:23 final size:25
Alignment explanation
Indices: 60524--60575 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
60514 TACTATTAAA
60524 AAATTTAAAAATTATTTTCA-TAATT
1 AAATTTAAAAATTATTTT-ATTAATT
*
60549 AAATTTAAATA-T-TTTTATTAATT
1 AAATTTAAAAATTATTTTATTAATT
60572 AAAT
1 AAAT
60576 AGTGATTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 1 0.04
23 13 0.52
24 1 0.04
25 10 0.40
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
AAATTTAAAAATTATTTTATTAATT
Found at i:61502 original size:6 final size:6
Alignment explanation
Indices: 61486--61529 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
61476 TTTAATATTA
* *
61486 TTATTT TTATAT TTATA- TCATAT TTATAT TATATAT TTATAT TT
1 TTATAT TTATAT TTATAT TTATAT TTATAT T-TATAT TTATAT TT
61530 TTTTAATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
5 4 0.12
6 23 0.70
7 6 0.18
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (6 bp):
TTATAT
Found at i:61523 original size:13 final size:12
Alignment explanation
Indices: 61486--61529 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 12
61476 TTTAATATTA
*
61486 TTATTTTTATAT
1 TTATATTTATAT
*
61498 TTATA-TCATAT
1 TTATATTTATAT
61509 TTATATTATATAT
1 TTATATT-TATAT
61522 TTATATTT
1 TTATATTT
61530 TTTTAATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 10 0.37
12 6 0.22
13 11 0.41
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (12 bp):
TTATATTTATAT
Found at i:61770 original size:2 final size:2
Alignment explanation
Indices: 61763--61791 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
61753 GGAGTGGGAA
61763 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61792 AAATATAGCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:61934 original size:21 final size:21
Alignment explanation
Indices: 61890--61935 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
61880 ACATGTTAAT
** *
61890 AAAATAAAAAAATATTAGAGA
1 AAAATAAAAAAATAAAAGAAA
*
61911 AAAATAAAAAGATAAAAGAAA
1 AAAATAAAAAAATAAAAGAAA
61932 AAAA
1 AAAA
61936 AACGATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (21 bp):
AAAATAAAAAAATAAAAGAAA
Found at i:63030 original size:18 final size:19
Alignment explanation
Indices: 62993--63040 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
62983 TTTAAATAAG
*
62993 AAGTGAAAAATTGATTGAAA
1 AAGTAAAAAATTGA-TGAAA
63013 AAGTAAAAAATTGA-GAAA
1 AAGTAAAAAATTGATGAAA
*
63031 AATTAAAAAA
1 AAGTAAAAAA
63041 ATATCATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 13 0.50
20 13 0.50
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.21
Consensus pattern (19 bp):
AAGTAAAAAATTGATGAAA
Found at i:65599 original size:20 final size:19
Alignment explanation
Indices: 65574--65647 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
65564 TTTACCCAGA
65574 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
65594 TGTATCGATACATTACTCAT
1 TGTATCGATACATT-TTCAT
* *
65614 TATATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
*
65634 CGTATCGATACATT
1 TGTATCGATACATT
65648 CAAGCATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.96
21 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:68069 original size:28 final size:27
Alignment explanation
Indices: 67999--68072 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 27
67989 TTTCACAATT
* *
67999 GGGGATACTTCAACCCCGTTATTTCATC
1 GGGGATACTCCAACTCCGTTATTT-ATC
68027 GGGGATACTCCAACTCCGTTATTT-TC
1 GGGGATACTCCAACTCCGTTATTTATC
68053 GAGGGAATA-TCCTAACTCCG
1 G-GGG-ATACTCC-AACTCCG
68073 GTTTTATTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
26 3 0.07
27 6 0.15
28 32 0.78
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (27 bp):
GGGGATACTCCAACTCCGTTATTTATC
Found at i:68248 original size:51 final size:51
Alignment explanation
Indices: 68188--68303 Score: 126
Period size: 51 Copynumber: 2.3 Consensus size: 51
68178 TTTTCGAGGG
* * * *
68188 GATACTCCAACCCCAATTTTATTTCTAAAA-TACTAATTTTTCACAATCGAA
1 GATACTCCAACCCCAATTTTATTTCCAAAACAAC-AATCTCTCACAATCGAA
* ** * **
68239 GATATTCCAATTCCAGTTTTATTTCCAAAACAACAATCTCTCACAATCGGG
1 GATACTCCAACCCCAATTTTATTTCCAAAACAACAATCTCTCACAATCGAA
68290 GATACTCCAACCCC
1 GATACTCCAACCCC
68304 CTTATTTTTG
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
51 49 0.96
52 2 0.04
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (51 bp):
GATACTCCAACCCCAATTTTATTTCCAAAACAACAATCTCTCACAATCGAA
Found at i:68259 original size:130 final size:129
Alignment explanation
Indices: 68024--68495 Score: 464
Period size: 130 Copynumber: 3.7 Consensus size: 129
68014 CCGTTATTTC
* * **
68024 ATCGGGGATACTCCAACTCCGTTATTTTCGAGGGAATA-TCCTAACTCCGGTTTTATTTCTAAAA
1 ATCGGGGATACTCCAAC-CCGTTATTTTCGAGGGGATACTCC-AACCCCAATTTTATTTCTAAAA
* * * **
68088 CACCAATTCTCCACAATCGGGGATATTCCAATTTTGATTTTATTTCTAAAATACCAATTTTTCAC
64 TACCAATTTTCCACAATCGAGGATATTCCAATTCCGATTTTATTTCTAAAATACCAATTTTTCAC
68153 A
129 A
*
68154 ATCGGGGATACTTCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTCTAAAAT
1 ATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTCTAAAAT
* * * * * * * *
68219 ACTAATTTTTCACAATCGAAGATATTCCAATTCC-AGTTTTATTTCCAAAACAACAATCTCTCAC
65 ACCAATTTTCCACAATCGAGGATATTCCAATTCCGA-TTTTATTTCTAAAATACCAATTTTTCAC
68283 A
129 A
* * * *
68284 ATCGGGGATACTCCAACCCCCTTATTTTTGAGGGGATACTCCAACCCCGACTTTA----T----T
1 ATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTCTAAAAT
* * *
68341 ACCAATTTTCCACAATCGAGGATACTCCAACTCCGATTTTATTT-TCAAAATACCGA-TTTTCTA
65 ACCAATTTTCCACAATCGAGGATATTCCAATTCCGATTTTATTTCT-AAAATACCAATTTTTC-A
*
68404 TA
128 CA
* * * * *
68406 ATCAGGGATACTCCAACCCTGTTACTTTCGAGGGGATATTCCAACCCCGATTTTTATTTCTAGAA
1 ATCGGGGATACTCCAACCC-GTTATTTTCGAGGGGATACTCCAACCCC-AATTTTATTTCTAAAA
* * * *
68471 CACCGATTTTCCATAATCGGGGATA
64 TACCAATTTTCCACAATCGAGGATA
68496 CTCTAGCCCC
Statistics
Matches: 278, Mismatches: 48, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
121 6 0.02
122 86 0.31
123 5 0.02
126 1 0.00
127 1 0.00
129 1 0.00
130 153 0.55
131 25 0.09
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (129 bp):
ATCGGGGATACTCCAACCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATA
CCAATTTTCCACAATCGAGGATATTCCAATTCCGATTTTATTTCTAAAATACCAATTTTTCACA
Found at i:71159 original size:18 final size:20
Alignment explanation
Indices: 71117--71154 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71107 CAATTTAAAA
71117 CAAAAAAAAATTATAACCTC
1 CAAAAAAAAATTATAACCTC
* *
71137 CAAAAACAAATTCTAACC
1 CAAAAAAAAATTATAACC
71155 CAAAAGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (20 bp):
CAAAAAAAAATTATAACCTC
Found at i:73446 original size:156 final size:153
Alignment explanation
Indices: 73247--73707 Score: 555
Period size: 155 Copynumber: 3.0 Consensus size: 153
73237 ATCCCGGTAA
* *
73247 CCCTAAAAGACTTAAAAAGATCATAGATAGGAATGAACCTATCCTAAATACCCACATTCGGCATA
1 CCCTAAAAGACTTAAAAAGATTATAGATAGG-ATGAACCTATCCTAAATACCCACATTCGGTATA
* * *
73312 AAAGCTGACCCGATAACAACCTAAGACTCAGTTATGAAAAAATTATGAAAATTCCTCTAGGGGAT
65 AAAGCTGACCCGATGACAACCTAAGACT-AGTT-TTAAAAAATTATGAAAATACCTCTAGGGGAT
73377 ACCTTCAACTTAGAAGTGCCCGACAC
128 ACCTTCAACTTAGAAGTGCCCGACAC
* * * * *
73403 CCCTAAATGACTTAAAAAGGATTATAGATTGGATGAACTTATCCTAAATACCTACTTTCGGTATA
1 CCCTAAAAGACTTAAAAA-GATTATAGATAGGATGAACCTATCCTAAATACCCACATTCGGTATA
* * *
73468 AAAG-TGAACCCGATGACAACCTAGGACTTGTTTTTAAAAAATTATGAAAATACCTTTAGGGGAT
65 AAAGCTG-ACCCGATGACAACCTAAGACTAG-TTTTAAAAAATTATGAAAATACCTCTAGGGGAT
* ** *
73532 ACCTTCACCTTAGAAGTGCTTGATAC
128 ACCTTCAACTTAGAAGTGCCCGACAC
* * * *
73558 CCCTAAAAGACTTAAAAATGATTATAAATGGGATGAACCTATCCTAAATATCCACCTTCGGTATA
1 CCCTAAAAGACTTAAAAA-GATTATAGATAGGATGAACCTATCCTAAATACCCACATTCGGTATA
* * * * * * *
73623 AAAACTGACCCGGTGACAACCTAAGACTTGGTTTTAGAAAAATTATGAAAATGCCACTAGGTGAC
65 AAAGCTGACCCGATGACAACCTAAGAC-TAGTTTTA-AAAAATTATGAAAATACCTCTAGGGGAT
* * *
73688 ACTTTCTACTTTGAAGTGCC
128 ACCTTCAACTTAGAAGTGCC
73708 TGATGAACCT
Statistics
Matches: 260, Mismatches: 39, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
155 136 0.52
156 113 0.43
157 11 0.04
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (153 bp):
CCCTAAAAGACTTAAAAAGATTATAGATAGGATGAACCTATCCTAAATACCCACATTCGGTATAA
AAGCTGACCCGATGACAACCTAAGACTAGTTTTAAAAAATTATGAAAATACCTCTAGGGGATACC
TTCAACTTAGAAGTGCCCGACAC
Found at i:74607 original size:13 final size:13
Alignment explanation
Indices: 74589--74615 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74579 ACAATTGTGC
74589 ATGTATCGATACA
1 ATGTATCGATACA
74602 ATGTATCGATACA
1 ATGTATCGATACA
74615 A
1 A
74616 AGCATGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:82968 original size:13 final size:13
Alignment explanation
Indices: 82950--82974 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82940 TTTGAAGCAA
82950 TGTATCGATACAT
1 TGTATCGATACAT
82963 TGTATCGATACA
1 TGTATCGATACA
82975 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:83053 original size:20 final size:20
Alignment explanation
Indices: 83028--83078 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
83018 CAGTTTCACA
***
83028 TATCGATACAATTGTGCATG
1 TATCGATACAATTAAACATG
83048 TATCGATACAA-TAAACATG
1 TATCGATACAATTAAACATG
83067 TATCGATACAAT
1 TATCGATACAAT
83079 GTATCGATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (20 bp):
TATCGATACAATTAAACATG
Found at i:83082 original size:13 final size:13
Alignment explanation
Indices: 83064--83090 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83054 TACAATAAAC
83064 ATGTATCGATACA
1 ATGTATCGATACA
83077 ATGTATCGATACA
1 ATGTATCGATACA
83090 A
1 A
83091 AGCATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:83267 original size:21 final size:21
Alignment explanation
Indices: 83214--83270 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
83204 AAATATTTTT
*
83214 ACTCAAAAACATTTGATTTAA
1 ACTCAAAAACATTTGATTCAA
*
83235 AGCTCGAAAACATTTG-TTCATA
1 A-CTCAAAAACATTTGATTCA-A
*
83257 ACTCTAAAACATTT
1 ACTCAAAAACATTT
83271 ATAGATATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 16 0.52
22 15 0.48
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (21 bp):
ACTCAAAAACATTTGATTCAA
Found at i:85114 original size:13 final size:13
Alignment explanation
Indices: 85096--85121 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85086 TGAACAGTGA
85096 TGTATCGATACAT
1 TGTATCGATACAT
85109 TGTATCGATACAT
1 TGTATCGATACAT
85122 GAATAGTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:85194 original size:10 final size:10
Alignment explanation
Indices: 85175--85206 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
85165 GTATCAATAC
85175 ATGAACAGTG
1 ATGAACAGTG
*
85185 ATGAATAGTG
1 ATGAACAGTG
85195 ATGAACAGTG
1 ATGAACAGTG
85205 AT
1 AT
85207 TTTTAACGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:85200 original size:20 final size:22
Alignment explanation
Indices: 85154--85270 Score: 79
Period size: 20 Copynumber: 5.5 Consensus size: 22
85144 TTAACGATAT
*
85154 ATGAA-AGTGATGTATCAA-TAC
1 ATGAACAGTGATGAAT-AAGTAC
*
85175 ATGAACAGTGATGAAT-AGT-G
1 ATGAACAGTGATGAATAAGTAC
***
85195 ATGAACAGTGATTTTTAACGATAC
1 ATGAACAGTGATGAATAA-G-TAC
*
85219 ATGAA-AGTGATGTATCAA-TAC
1 ATGAACAGTGATGAAT-AAGTAC
*
85240 ATGAACAGTGATGAAT-AGT-G
1 ATGAACAGTGATGAATAAGTAC
85260 ATGAACAGTGA
1 ATGAACAGTGA
85271 AAATGCGATT
Statistics
Matches: 77, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
20 26 0.34
21 16 0.21
22 19 0.25
23 9 0.12
24 7 0.09
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGAATAAGTAC
Found at i:85201 original size:65 final size:65
Alignment explanation
Indices: 85120--85270 Score: 293
Period size: 65 Copynumber: 2.3 Consensus size: 65
85110 GTATCGATAC
*
85120 ATGAATAGTGATGAACAGTGATTTTTAACGATATATGAAAGTGATGTATCAATACATGAACAGTG
1 ATGAATAGTGATGAACAGTGATTTTTAACGATACATGAAAGTGATGTATCAATACATGAACAGTG
85185 ATGAATAGTGATGAACAGTGATTTTTAACGATACATGAAAGTGATGTATCAATACATGAACAGTG
1 ATGAATAGTGATGAACAGTGATTTTTAACGATACATGAAAGTGATGTATCAATACATGAACAGTG
85250 ATGAATAGTGATGAACAGTGA
1 ATGAATAGTGATGAACAGTGA
85271 AAATGCGATT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 85 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (65 bp):
ATGAATAGTGATGAACAGTGATTTTTAACGATACATGAAAGTGATGTATCAATACATGAACAGTG
Found at i:85259 original size:10 final size:10
Alignment explanation
Indices: 85240--85270 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
85230 GTATCAATAC
85240 ATGAACAGTG
1 ATGAACAGTG
*
85250 ATGAATAGTG
1 ATGAACAGTG
85260 ATGAACAGTG
1 ATGAACAGTG
85270 A
1 A
85271 AAATGCGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:85352 original size:53 final size:53
Alignment explanation
Indices: 85294--85430 Score: 231
Period size: 53 Copynumber: 2.6 Consensus size: 53
85284 CTACTACCAA
*
85294 TGTATCGATACATAGTT-TGTGTATCGATACAAATTTGGCTACTGCCAGTGACC
1 TGTATCGATACATA-TTGTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
*
85347 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
85400 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATA-TTGTGTGTATCGATAC
85431 TATGCAATCT
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
52 2 0.03
53 62 0.77
54 16 0.20
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (53 bp):
TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:85463 original size:20 final size:20
Alignment explanation
Indices: 85400--85470 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
85390 GCCAATGTCC
**
85400 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
85420 TGTATCGATAC-TATGCAATC
1 TGTATCGATACATAT-TAATG
85440 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
85460 TGTATCGATAC
1 TGTATCGATAC
85471 TTTTCAAGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:85912 original size:19 final size:21
Alignment explanation
Indices: 85864--85918 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
85854 AATTTCAATG
*
85864 ATTTGTATCGATACATTCAGT
1 ATTTGTATCGATACATTAAGT
**
85885 AAATGTATCGATACA-TAAGT
1 ATTTGTATCGATACATTAAGT
85905 -TTTGTATCGATACA
1 ATTTGTATCGATACA
85919 ATGTATCGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 12 0.41
20 4 0.14
21 13 0.45
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (21 bp):
ATTTGTATCGATACATTAAGT
Found at i:85969 original size:21 final size:21
Alignment explanation
Indices: 85943--85984 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
85933 AGCTACTGCC
*
85943 AAGGAAATGTATTGATACATT
1 AAGGAAATGTATCGATACATT
85964 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
85985 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:85989 original size:13 final size:13
Alignment explanation
Indices: 85971--85996 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85961 ATTAAGGAAA
85971 TGTATCGATACAT
1 TGTATCGATACAT
85984 TGTATCGATACAT
1 TGTATCGATACAT
85997 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88449 original size:52 final size:50
Alignment explanation
Indices: 88329--89034 Score: 481
Period size: 52 Copynumber: 13.6 Consensus size: 50
88319 GTTAAGTTTC
* * * *
88329 TCAATTATTCATAATCGGGGATACTCTAACCCCGATTTTATTTTCAAAACA
1 TCAATTTTTCACAATCGGGGATACTCCAA-CCCGATTTTATTTCCAAAACA
* * * ** *
88380 CCAAGTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATA
1 TCAATTTTTC-ACAATCGGGGATACTCCAAC-CCGATTTTATTTCC-AAAACA
* * ***** *
88433 TCAATTTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATA-A
1 TCAATTTTTCACAATCGGGGATACTCCAACC-CG--ATTTTATTTCCAAAACA
* * * ** * *
88485 TCCAACCCTGTT-AC-CTCCGAGAGGATACTCCAACCTCGGCTTTATTCCCAAAATA
1 T-CAA--TTTTTCACAAT-CG-G-GGATACTCCAACC-CGATTTTATTTCCAAAACA
** * * *
88540 TTGATTTCTCATAATCGGGGATACTCCAACCTCGATTTTATTTCTAAAACA
1 TCAATTTTTCACAATCGGGGATACTCCAACC-CGATTTTATTTCCAAAACA
* * *
88591 -CTAATTTTCCACAATCGGGGATACTCCAACCTCGGTTTTATTTTCAAAACA
1 TC-AATTTTTCACAATCGGGGATACTCCAACC-CGATTTTATTTCCAAAACA
* ** * *
88642 TCAATTTTCCTTTAATCGGGGATACTCTAACTCCGATTTTATTTTCAAAAACA
1 TCAATTTTTC-ACAATCGGGGATACTCCAAC-CCGATTTTA-TTTCCAAAACA
* * * *
88695 CCAATTTTTCACAATCGGAGATACTCCAACCTCGGTTTTATTTCTAAAACA
1 TCAATTTTTCACAATCGGGGATACTCCAACC-CGATTTTATTTCCAAAACA
* * *
88746 -CTAATTTTTCATAATCGGGGATACTCCAACCCCAGTTTTATTTTCAAAACA
1 TC-AATTTTTCACAATCGGGGATACTCCAACCCGA-TTTTATTTCCAAAACA
* * ** *
88797 CCAATTTTCCTTTAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAACA
1 TCAATTTTTC-ACAATCGGGGATACTCCAAC-CCGATTTTATTTCC-AAAACA
* * **
88850 TCAATTTTTCACAATTGGGGATACTCCAACCCTGGTTTTATTTTTAAAACA
1 TCAATTTTTCACAATCGGGGATACTCCAACCC-GATTTTATTTCCAAAACA
* * * *
88901 -CTAA-TTTCCACAATCGAGGATACTCCAACCCCGGTTTTATTTTCAAAACA
1 TC-AATTTTTCACAATCGGGGATACTCCAA-CCCGATTTTATTTCCAAAACA
* * ** **
88951 CCAATTTTCCTTTAATTAGGGATACTCCAACTCCGATTTTATTTCCAAAAACA
1 TCAATTTTTC-ACAATCGGGGATACTCCAAC-CCGATTTTATTTCC-AAAACA
* *
89004 CCAATTTTTCACAATCGAGGATACTCCAACC
1 TCAATTTTTCACAATCGGGGATACTCCAACC
89035 TCGTTATTTC
Statistics
Matches: 515, Mismatches: 105, Indels: 70
0.75 0.15 0.10
Matches are distributed among these distances:
50 43 0.08
51 165 0.32
52 198 0.38
53 70 0.14
54 18 0.03
55 5 0.01
56 16 0.03
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (50 bp):
TCAATTTTTCACAATCGGGGATACTCCAACCCGATTTTATTTCCAAAACA
Found at i:88738 original size:155 final size:155
Alignment explanation
Indices: 88543--89037 Score: 780
Period size: 155 Copynumber: 3.2 Consensus size: 155
88533 CAAAATATTG
* * * *
88543 ATTTCTCATAATCGGGGATACTCCAACCTCGATTTTATTTCTAAAACACTAATTTTCCACAATCG
1 ATTTTTCACAATCGGAGATACTCCAACCTCGGTTTTATTTCTAAAACACTAATTTTCCACAATCG
* * *
88608 GGGATACTCCAACCTCGGTTTTATTTTCAAAACATCAATTTTCCTTTAATCGGGGATACTCTAAC
66 GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAAC
*
88673 TCCGATTTTATTTTCAAAAACACCA
131 TCCGATTTTATTTCCAAAAACACCA
* *
88698 ATTTTTCACAATCGGAGATACTCCAACCTCGGTTTTATTTCTAAAACACTAATTTTTCATAATCG
1 ATTTTTCACAATCGGAGATACTCCAACCTCGGTTTTATTTCTAAAACACTAATTTTCCACAATCG
*
88763 GGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAAC
66 GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAAC
* *
88828 TCTGATTTTATTTCCAAAAACATCA
131 TCCGATTTTATTTCCAAAAACACCA
* * *
88853 ATTTTTCACAATTGGGGATACTCCAACC-CTGGTTTTATTTTTAAAACACTAA-TTTCCACAATC
1 ATTTTTCACAATCGGAGATACTCCAACCTC-GGTTTTATTTCTAAAACACTAATTTTCCACAATC
* **
88916 GAGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATTAGGGATACTCCAA
65 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAA
88981 CTCCGATTTTATTTCCAAAAACACCA
130 CTCCGATTTTATTTCCAAAAACACCA
89007 ATTTTTCACAATC-GAGGATACTCCAACCTCG
1 ATTTTTCACAATCGGA-GATACTCCAACCTCG
89038 TTATTTCATC
Statistics
Matches: 311, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
153 1 0.00
154 120 0.39
155 190 0.61
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (155 bp):
ATTTTTCACAATCGGAGATACTCCAACCTCGGTTTTATTTCTAAAACACTAATTTTCCACAATCG
GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAAC
TCCGATTTTATTTCCAAAAACACCA
Found at i:101644 original size:16 final size:16
Alignment explanation
Indices: 101622--101664 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
101612 TTTCTTTTTC
*
101622 AAAAAAAAAAAATAAAT
1 AAAAAAAAAACA-AAAT
101639 AAAAAAAAAACAAAAT
1 AAAAAAAAAACAAAAT
101655 AAACAAAAAA
1 AAA-AAAAAA
101665 GAATCTGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.88, C:0.05, G:0.00, T:0.07
Consensus pattern (16 bp):
AAAAAAAAAACAAAAT
Found at i:101647 original size:20 final size:20
Alignment explanation
Indices: 101622--101664 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
101612 TTTCTTTTTC
*
101622 AAAAAAAAAAAATAAATAAA
1 AAAAAAAAAAAATAAACAAA
*
101642 AAAAAAACAAAATAAACAAA
1 AAAAAAAAAAAATAAACAAA
101662 AAA
1 AAA
101665 GAATCTGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.88, C:0.05, G:0.00, T:0.07
Consensus pattern (20 bp):
AAAAAAAAAAAATAAACAAA
Found at i:102800 original size:59 final size:60
Alignment explanation
Indices: 102625--102830 Score: 285
Period size: 60 Copynumber: 3.4 Consensus size: 60
102615 CTTCTCCTTC
* *
102625 CACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACATAAGCTGGTGG
1 CACTTTTCAGTCCTCAAAGAGCAGGATGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
102686 CAC-CTTCAGTCCTCAAAGAGCAGGACGCCTTCTCTTTTTAAATCCCACACAAGTTGGTGG
1 CACTTTTCAGTCCTCAAAGAGCAGGATGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGG
*
102746 CACTTTTCAGTCTTCAAAGAGCAGGATG-CTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGG
102805 CACCTTCTT--GTCCTCAAAGAGCAGGA
1 CA-CTT-TTCAGTCCTCAAAGAGCAGGA
102831 CGTTCTCTCC
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
59 46 0.36
60 57 0.44
61 26 0.20
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (60 bp):
CACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:102922 original size:55 final size:55
Alignment explanation
Indices: 102847--103048 Score: 246
Period size: 55 Copynumber: 3.6 Consensus size: 55
102837 CTCCTTTCAC
* *
102847 CCTTT-AGTCTTCAAAGAGCAGGACGCCTTGCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
102901 CCTTTCAGTCCTCAAATAGCAGGACGCCTTTTAAAGCCCACATAAGCTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
102956 CC-TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA------CGCC-TTTCAAAGCCCACACAAGTTGGTGGCA
* *
103017 CCTTCCAGTCCTCAAAGAGCAGGACACCTTTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
103049 CTTTTCAAAG
Statistics
Matches: 126, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
54 25 0.20
55 49 0.39
56 3 0.02
60 3 0.02
61 26 0.21
62 20 0.16
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:103051 original size:61 final size:60
Alignment explanation
Indices: 102877--103098 Score: 267
Period size: 61 Copynumber: 3.8 Consensus size: 60
102867 GGACGCCTTG
* *
102877 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAATAGCAGG-A-C--GCCTTTT
1 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAACCTTTCCTTTT
* * *
102933 -AAAGCCCACATAAGCTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTT
1 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-ACCTT-TCCTTTT
*
102993 CAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTCCTTTT
1 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-ACCTTTCCTTTT
* * * * * *
103054 CAAAGCCCATACGAGTTGTTGGAACTTTTTAGTCCTCAAAGAGCA
1 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCA
103099 AGATGCACTT
Statistics
Matches: 141, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
54 19 0.13
55 23 0.16
57 1 0.01
60 6 0.04
61 68 0.48
62 24 0.17
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (60 bp):
CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAACCTTTCCTTTT
Found at i:103291 original size:40 final size:40
Alignment explanation
Indices: 103191--103293 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 40
103181 TGCGACGTAC
* *
103191 TCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCAAGACACTTTCATTT
*
103232 TCTTCTCTTCCTTTGTCCTCAAGGAGCAAGAC-CTATTTCATTT
1 TCTT-T-TTCCTTTGTCCTCAAGAAGCAAGACAC--TTTCATTT
103275 TC-TTTTCCTTTGTCCTCAA
1 TCTTTTTCCTTTGTCCTCAA
103294 AAAGTGGGAC
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
40 15 0.27
41 6 0.11
42 22 0.40
43 12 0.22
ACGTcount: A:0.17, C:0.28, G:0.11, T:0.44
Consensus pattern (40 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCAAGACACTTTCATTT
Found at i:103852 original size:1 final size:1
Alignment explanation
Indices: 103842--103904 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
103832 TTTGGAAAGC
* * * * * * * *
103842 AAAAAGAAAAAAAATAATAATAATAAAAAAAATAAAAAAATAAAAATAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
103905 TACATTTTTG
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.87, C:0.00, G:0.02, T:0.11
Consensus pattern (1 bp):
A
Found at i:103866 original size:9 final size:9
Alignment explanation
Indices: 103842--103904 Score: 69
Period size: 9 Copynumber: 7.2 Consensus size: 9
103832 TTTGGAAAGC
*
103842 AAAAAGAAA
1 AAAAATAAA
*
103851 AAAAATAAT
1 AAAAATAAA
*
103860 AATAATAAA
1 AAAAATAAA
103869 AAAAAT-AA
1 AAAAATAAA
103877 AAAAATAAA
1 AAAAATAAA
103886 AATAAA-AAA
1 AA-AAATAAA
103895 AAAAA-AAA
1 AAAAATAAA
103903 AA
1 AA
103905 TACATTTTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
8 16 0.34
9 28 0.60
10 3 0.06
ACGTcount: A:0.87, C:0.00, G:0.02, T:0.11
Consensus pattern (9 bp):
AAAAATAAA
Found at i:103871 original size:17 final size:17
Alignment explanation
Indices: 103842--103904 Score: 76
Period size: 18 Copynumber: 3.7 Consensus size: 17
103832 TTTGGAAAGC
*
103842 AAAAAGAAAAAAAATAA
1 AAAAATAAAAAAAATAA
*
103859 TAATAATAAAAAAAATAA
1 -AAAAATAAAAAAAATAA
103877 AAAAATAAAAATAAA-AA
1 AAAAATAAAAA-AAATAA
103894 AAAAA-AAAAAA
1 AAAAATAAAAAA
103905 TACATTTTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
15 1 0.02
16 5 0.12
17 17 0.41
18 18 0.44
ACGTcount: A:0.87, C:0.00, G:0.02, T:0.11
Consensus pattern (17 bp):
AAAAATAAAAAAAATAA
Found at i:103878 original size:23 final size:23
Alignment explanation
Indices: 103842--103906 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
103832 TTTGGAAAGC
* *
103842 AAAAAGAAAAAAAATAATAATAAT
1 AAAAA-AAAAAAAAAAATAAAAAT
*
103866 AAAAAAAATAAAAAAATAAAAAT
1 AAAAAAAAAAAAAAAATAAAAAT
103889 AAAAAAAAAAAAAAAATA
1 AAAAAAAAAAAAAAAATA
103907 CATTTTTGTC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 32 0.86
24 5 0.14
ACGTcount: A:0.86, C:0.00, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAAAAAAAAAAAAAATAAAAAT
Found at i:103878 original size:26 final size:24
Alignment explanation
Indices: 103842--103904 Score: 90
Period size: 26 Copynumber: 2.5 Consensus size: 24
103832 TTTGGAAAGC
* *
103842 AAAAAGAAAAAAAATAATAATAATA
1 AAAAAAAAAAAAAATAAAAATAA-A
103867 AAAAAAATAAAAAAATAAAAATAAA
1 AAAAAAA-AAAAAAATAAAAATAAA
103892 AAAAAAAAAAAAA
1 AAAAAAAAAAAAA
103905 TACATTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
24 6 0.17
25 14 0.40
26 15 0.43
ACGTcount: A:0.87, C:0.00, G:0.02, T:0.11
Consensus pattern (24 bp):
AAAAAAAAAAAAAATAAAAATAAA
Found at i:104036 original size:19 final size:21
Alignment explanation
Indices: 103988--104042 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
103978 AATTTCAATA
*
103988 ATTTGTATCGATACATTCAGT
1 ATTTGTATCGATACATTAAGT
**
104009 AAATGTATCGATACA-TAAGT
1 ATTTGTATCGATACATTAAGT
104029 -TTTGTATCGATACA
1 ATTTGTATCGATACA
104043 ATGTATCGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 12 0.41
20 4 0.14
21 13 0.45
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (21 bp):
ATTTGTATCGATACATTAAGT
Found at i:104093 original size:21 final size:21
Alignment explanation
Indices: 104067--104108 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
104057 AGCTACTGCC
*
104067 AAGGAAATGTATCGATGCATT
1 AAGGAAATGTATCGATACATT
104088 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
104109 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:104113 original size:13 final size:13
Alignment explanation
Indices: 104095--104120 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104085 ATTAAGGAAA
104095 TGTATCGATACAT
1 TGTATCGATACAT
104108 TGTATCGATACAT
1 TGTATCGATACAT
104121 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:106538 original size:52 final size:51
Alignment explanation
Indices: 106482--107332 Score: 719
Period size: 52 Copynumber: 16.4 Consensus size: 51
106472 AATTGTTCAT
**
106482 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCC-AC
* * * *
106534 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAAACACCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTT-TCAAAACACTAATTTTCCAC
* * * ***** * * * **
106586 AATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAA--CCCCGTTAC
1 AATCGGGGATACTCCAACCCCG--ATTTTATTTTCAAAACACTAATTTTCC---AC
** ** ** * * * *
106640 CTTCGAGAGGATACTCCAACCCCGGCTTTATTCCCAAAATATTGA-TTTCTCAT
1 AATCG-G-GGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTC-CAC
* *
106693 AATCGGGGATACTCCAACCCCGGTTTT-TTTTCTAAAATACTAATTTTCCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACTAATTTTCCAC
* * **
106744 AATCGGGGATACTCCAACCCCGGTTTTATTTAT-AAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTT-TCAAAACACTAATTTTCC-AC
** * *
106796 AATCGGGGATACTCCAACTTCGAGTTTATTTCCAAAAACACTAATTTTCCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACTAATTTTCCAC
*
106848 AATCGGGGATACTTCAACCCCGATTTTA-TTTCTAAAACACTAATTTTCCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACTAATTTTCCAC
* * * **
106899 AATCAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCC-AC
** * *
106951 AATCGGGGATACTCCAACTTCGATTTTATTTCCAAAA-ACATCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC-T-AATTTTCCAC
* * *
107003 AATTGGGGATACTCTAACCCCAGGTTTTA-TTTCTAAAACACTAATTTTCCAC
1 AATCGGGGATACTCCAACCCC-GATTTTATTTTC-AAAACACTAATTTTCCAC
* * * **
107055 AATCAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCC-AC
* * * * * *
107107 AATCGGGGATACTCTAACTCTGATTTTATTTCCAAAAACACCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACTAATTTTCCAC
* * *
107159 AATTGGGGATACTCCAACCCCGGTTTTATTTTTAAAACACTAATTTTCCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCCAC
* * * * **
107210 AATTGGGGATACTCCAACCCCGGTTTTATTTTTAAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCC-AC
* * * * * *
107262 AATTGGGGATACTCCAACTCTGATTTTATTTTCAAAAATACCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACTAATTTTCCAC
*
107314 AATCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
107333 TCGTTATTTC
Statistics
Matches: 643, Mismatches: 127, Indels: 58
0.78 0.15 0.07
Matches are distributed among these distances:
50 3 0.00
51 221 0.34
52 293 0.46
53 89 0.14
54 20 0.03
55 1 0.00
56 16 0.02
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (51 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCCAC
Found at i:106651 original size:28 final size:27
Alignment explanation
Indices: 106589--106663 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 27
106579 TTTTCACAAT
* *
106589 CGAGGATACTCCAACCTCGTTATTTCA
1 CGAGGATACTCCAACCCCGTTACTTCA
*
106616 TCGGGGATACTCCAACCCCGTTACCTTCGA
1 -CGAGGATACTCCAACCCCGTTA-CTTC-A
106646 -GAGGATACTCCAACCCCG
1 CGAGGATACTCCAACCCCG
106664 GCTTTATTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 37 0.90
29 3 0.07
30 1 0.02
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.23
Consensus pattern (27 bp):
CGAGGATACTCCAACCCCGTTACTTCA
Found at i:106713 original size:51 final size:51
Alignment explanation
Indices: 106648--107332 Score: 548
Period size: 51 Copynumber: 13.3 Consensus size: 51
106638 ACCTTCGAGA
* * * *
106648 GGATACTCCAACCCCGGCTTTATTCCCAAAATATTGA-TTTCTCATAATCGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTC-CACAATCGG
* * *
106699 GGATACTCCAACCCCGGTTTTTTTTCTAAAATACTAATTTTCCACAATCGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCCACAATCGG
*** * * **
106750 GGATACTCCAACCCCGGTTTTATTTATAAAACACCAATTTTCCTTTAATCGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCC-ACAATCGG
** * *
106802 GGATACTCCAACTTCGAG-TTTATTTCCAAAAACACTAATTTTCCACAATCGG
1 GGATACTCCAACCCCG-GTTTTA-TTCCCAAAATACTAATTTTCCACAATCGG
* * * * * *
106854 GGATACTTCAACCCCGATTTTATTTCTAAAACACTAATTTTCCACAATCAG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCCACAATCGG
** * * **
106905 GGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCC-ACAATCGG
** * * * *
106957 GGATACTCCAACTTCGATTTTATTTCCAAAA-ACATCAATTTTTCACAATTGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATAC-T-AATTTTCCACAATCGG
* * * * *
107009 GGATACTCTAACCCCAGGTTTTATTTCTAAAACACTAATTTTCCACAATCAG
1 GGATACTCCAACCCC-GGTTTTATTCCCAAAATACTAATTTTCCACAATCGG
** * * **
107061 GGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCC-ACAATCGG
* * * * * * * * *
107113 GGATACTCTAACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATTGG
1 GGATACTCCAACCCCGGTTTTA-TTCCCAAAATACTAATTTTCCACAATCGG
*** * *
107165 GGATACTCCAACCCCGGTTTTATTTTTAAAACACTAATTTTCCACAATTGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCCACAATCGG
*** * * ** *
107216 GGATACTCCAACCCCGGTTTTATTTTTAAAACACCAATTTTCCTTTAATTGG
1 GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCC-ACAATCGG
* * * * * * * *
107268 GGATACTCCAACTCTGATTTTATTTTCAAAAATACCAATTTTTCACAATCGA
1 GGATACTCCAACCCCGGTTTTA-TTCCCAAAATACTAATTTTCCACAATCGG
107320 GGATACTCCAACC
1 GGATACTCCAACC
107333 TCGTTATTTC
Statistics
Matches: 525, Mismatches: 95, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
51 235 0.45
52 214 0.41
53 74 0.14
54 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (51 bp):
GGATACTCCAACCCCGGTTTTATTCCCAAAATACTAATTTTCCACAATCGG
Found at i:106881 original size:155 final size:153
Alignment explanation
Indices: 106481--107332 Score: 1005
Period size: 155 Copynumber: 5.5 Consensus size: 153
106471 CAATTGTTCA
* * **
106481 TAATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACTAATTTTCCTTTAATCGGGGATA
1 TAATCGGGGATACTCCAA-CTCGATTTTATTTCCAAAAACACTAATTTTCC-ACAATCGGGGATA
* * * * * * *
106545 CTCCAACTCCGATTTTATTTCTAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGTT
64 CTCCAACCCCGGTTTTATTTCT-AAAACACTAATTTTCCACAATCGGGGATACTCCAACCCCGGT
**** * * ** *
106610 ATTTCATCGGGGATACTCCAA--CCCCGT
128 -TTT-AT-TTTAAAACACCAATTTTCCTT
* * ** * * * * *
106637 TACCTTCGAGAGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGA-TTTCTCATAATCGGG
1 TA--ATCG-G-GGATACTCCAA-CTCGATTTTATTTCCAAAAACACTAATTTTC-CACAATCGGG
* *
106700 GATACTCCAACCCCGGTTTTTTTTCTAAAATACTAATTTTCCACAATCGGGGATACTCCAACCCC
60 GATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCACAATCGGGGATACTCCAACCCC
106765 GGTTTTATTTATAAAACACCAATTTTCCTT
125 GGTTTTATTT-TAAAACACCAATTTTCCTT
*
106795 TAATCGGGGATACTCCAACTTCGAGTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATAC
1 TAATCGGGGATACTCCAAC-TCGATTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATAC
* * *
106860 TTCAACCCCGATTTTATTTCTAAAACACTAATTTTCCACAATCAGGGATACTCCAACCCCGGTTT
65 TCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCACAATCGGGGATACTCCAACCCCGGTTT
106925 TATTTTCAAAACACCAATTTTCCTT
130 TATTTT-AAAACACCAATTTTCCTT
* *
106950 TAATCGGGGATACTCCAACTTCGATTTTATTTCCAAAAACA-TCAATTTTTCACAATTGGGGATA
1 TAATCGGGGATACTCCAAC-TCGATTTTATTTCCAAAAACACT-AATTTTCCACAATCGGGGATA
* *
107014 CTCTAACCCCAGGTTTTATTTCTAAAACACTAATTTTCCACAATCAGGGATACTCCAACCCCGGT
64 CTCCAACCCC-GGTTTTATTTCTAAAACACTAATTTTCCACAATCGGGGATACTCCAACCCCGGT
107079 TTTATTTTCAAAACACCAATTTTCCTT
128 TTTATTTT-AAAACACCAATTTTCCTT
* * * *
107106 TAATCGGGGATACTCTAACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATTGGGGATAC
1 TAATCGGGGATACTCCAACTC-GATTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATAC
* *
107171 TCCAACCCCGGTTTTATTTTTAAAACACTAATTTTCCACAATTGGGGATACTCCAACCCCGGTTT
65 TCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCACAATCGGGGATACTCCAACCCCGGTTT
107236 TATTTTTAAAACACCAATTTTCCTT
130 TA-TTTTAAAACACCAATTTTCCTT
* * * * * *
107261 TAATTGGGGATACTCCAACTCTGATTTTATTTTCAAAAATACCAATTTTTCACAATCGAGGATAC
1 TAATCGGGGATACTCCAACTC-GATTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATAC
107326 TCCAACC
65 TCCAACC
107333 TCGTTATTTC
Statistics
Matches: 620, Mismatches: 58, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
153 1 0.00
154 19 0.03
155 317 0.51
156 169 0.27
157 3 0.00
158 44 0.07
159 39 0.06
160 28 0.05
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (153 bp):
TAATCGGGGATACTCCAACTCGATTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATACT
CCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCACAATCGGGGATACTCCAACCCCGGTTTT
ATTTTAAAACACCAATTTTCCTT
Found at i:107094 original size:311 final size:307
Alignment explanation
Indices: 106481--107332 Score: 1066
Period size: 311 Copynumber: 2.7 Consensus size: 307
106471 CAATTGTTCA
* * **
106481 TAATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACTAATTTTCCTTTAATCGGGGATA
1 TAATCGGGGATACTCCAA-CTCGATTTTATTTCCAAAAACACTAATTTTCC-ACAATCGGGGATA
* * * * *
106545 CTCCAACTCCGATTTTATTTCTAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGTT
64 CTCCAACCCCGATTTTATTTCT-AAAACACTAATTTTCCACAATCG-GGATACTCCAACCCCGGT
***** * * ** * * * **
106610 ATTTCATCGGGGATACTCCAA--CCCCGTTACCTTCGAGAGGATACTCCAACCCCGGCTTTA-TT
127 -TTT-ATTTTCAAAACACCAATTTTCCTTTA--ATCG-G-GGATACTCCAA-CTCGATTTTATTT
* ** * * * *
106672 CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTTTTTCTAAAATACTAAT
185 CCAAAAATATCAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAAT
*
106737 TTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTATAAAACACCAATTTTCCTT
250 TTTCCACAATCAGGGATACTCCAACCCCGGTTTTATTTATAAAACACCAATTTTCCTT
*
106795 TAATCGGGGATACTCCAACTTCGAGTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATAC
1 TAATCGGGGATACTCCAAC-TCGATTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATAC
*
106860 TTCAACCCCGATTTTATTTCTAAAACACTAATTTTCCACAATCAGGGATACTCCAACCCCGGTTT
65 TCCAACCCCGATTTTATTTCTAAAACACTAATTTTCCACAATC-GGGATACTCCAACCCCGGTTT
*
106925 TATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAACTTCGATTTTATTTCCAAAAAC
129 TATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAAC-TCGATTTTATTTCCAAAAAT
* *
106990 ATCAATTTTTCACAATTGGGGATACTCTAACCCCAGGTTTTATTTCTAAAACACTAATTTTCCAC
193 ATCAATTTTTCACAATCGGGGATACTCCAACCCC-GGTTTTATTTCTAAAACACTAATTTTCCAC
107055 AATCAGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCCTT
257 AATCAGGGATACTCCAACCCCGGTTTTATTTAT-AAAACACCAATTTTCCTT
* * * *
107106 TAATCGGGGATACTCTAACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATTGGGGATAC
1 TAATCGGGGATACTCCAACTC-GATTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATAC
* * *
107171 TCCAACCCCGGTTTTATTTTTAAAACACTAATTTTCCACAATTGGGGATACTCCAACCCCGGTTT
65 TCCAACCCCGATTTTATTTCTAAAACACTAATTTTCCACAA-TCGGGATACTCCAACCCCGGTTT
* * *
107236 TATTTTTAAAACACCAATTTTCCTTTAATTGGGGATACTCCAACTCTGATTTTATTTTCAAAAAT
129 TATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAACTC-GATTTTATTTCCAAAAAT
* *
107301 ACCAATTTTTCACAATCGAGGATACTCCAACC
193 ATCAATTTTTCACAATCGGGGATACTCCAACC
107333 TCGTTATTTC
Statistics
Matches: 473, Mismatches: 53, Indels: 27
0.86 0.10 0.05
Matches are distributed among these distances:
308 1 0.00
309 17 0.04
310 42 0.09
311 290 0.61
312 4 0.01
313 42 0.09
314 61 0.13
315 16 0.03
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (307 bp):
TAATCGGGGATACTCCAACTCGATTTTATTTCCAAAAACACTAATTTTCCACAATCGGGGATACT
CCAACCCCGATTTTATTTCTAAAACACTAATTTTCCACAATCGGGATACTCCAACCCCGGTTTTA
TTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAACTCGATTTTATTTCCAAAAATATC
AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCACAATC
AGGGATACTCCAACCCCGGTTTTATTTATAAAACACCAATTTTCCTT
Found at i:107523 original size:79 final size:79
Alignment explanation
Indices: 107345--107526 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 79
107335 GTTATTTCAT
* ** *
107345 CGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
* * *
107410 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * * * * * *
107424 TGGGGATACTCCAACTCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTCC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAAT-A
107488 TCGATTTCTCACAAC
65 TCGATTTCTCACAAC
107503 CGGGGATACTCCAACCCCGTTATT
1 CGGGGATACTCCAACCCCGTTATT
107527 ATCTCCAAAA
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 3 0.04
79 82 0.96
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:108825 original size:29 final size:29
Alignment explanation
Indices: 108783--108855 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
108773 TAAACAGTAC
108783 ATGTATCGATACATTCTGTTTTTACCCAG
1 ATGTATCGATACATTCTGTTTTTACCCAG
108812 ATGTATCGATACATTCTGTTTTTACCCAG
1 ATGTATCGATACATTCTGTTTTTACCCAG
108841 ATGTATCGATACATT
1 ATGTATCGATACATT
108856 TTTCAATGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (29 bp):
ATGTATCGATACATTCTGTTTTTACCCAG
Found at i:108883 original size:49 final size:50
Alignment explanation
Indices: 108812--108925 Score: 176
Period size: 51 Copynumber: 2.3 Consensus size: 50
108802 TTTTACCCAG
*
108812 ATGTATCGATACATTCT-GTTTTTACCCAGATGTATCGATACATTTTTCA
1 ATGTATCGATACATTCTATTTTTTACCCAGATGTATCGATACATTTTTCA
* *
108861 ATGTATCGGTACATTTTATTTTTTTACCCAGATGTATCGATACATTTTTCA
1 ATGTATCGATACATTCTA-TTTTTTACCCAGATGTATCGATACATTTTTCA
*
108912 ATGTATCAATACAT
1 ATGTATCGATACAT
108926 CTAGTTAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
49 15 0.26
51 43 0.74
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (50 bp):
ATGTATCGATACATTCTATTTTTTACCCAGATGTATCGATACATTTTTCA
Found at i:109841 original size:20 final size:20
Alignment explanation
Indices: 109816--109855 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
109806 TAGCCTTTGA
*
109816 TCATGCATTTTTACTATGTT
1 TCATGCATTTTTAATATGTT
109836 TCATGCATTTTTAATATGTT
1 TCATGCATTTTTAATATGTT
109856 CGGCATCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (20 bp):
TCATGCATTTTTAATATGTT
Found at i:113652 original size:166 final size:165
Alignment explanation
Indices: 113330--113897 Score: 701
Period size: 166 Copynumber: 3.4 Consensus size: 165
113320 AAAATATTAT
* * * ** * * **
113330 ATGAATTTTAAAAATTTTAAATTGAGAAAAATCCCCTCAAAAACATTTATGGAATAGAAGACTTA
1 ATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACTCC
* * **
113395 GT-TTTTCGAAAATAAG-GAATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATGAAAATTT
66 GTATTTT-GAAAATAGGAGAATTTCAAAGAAAAAATGAAAAACTCATGAAAATAAATGAATTTTT
* * *
113458 CAAAACTGATTTACTTTGAATCAAATGATGATATTTG
130 CAAAAATGATTTA-TATGAATTAAATGATGATATTTG
* * * * *
113495 ATGAATTTTAAAAATTATAAACCAAGAAAAATCCCCTCGAAAACATTTACGGAGTAGAAAACTCC
1 ATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACTCC
*
113560 GTATTTTGAAAATAGGAGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATAAATGAATTTTTC
66 GTATTTTGAAAATAGGAGAATTTCAAAGAAAAAATGAAAAACTCATGAAAATAAATGAATTTTTC
* * *
113625 AAAAAGGATTTGATATGAGTTAAATGATGATATTTA
131 AAAAATGATTT-ATATGAATTAAATGATGATATTTG
* * *
113661 ATTAATTTTAAAAATTATAAACTAAGAAAAATCCCCTTAAAAACATTTACAGAATAAAAAACTCT
1 ATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACTCC
* * * * * *
113726 GTATTTAGAAAACAGGAAAATTTCAAAAAAAAAATGAAAAACTCATGAAAATGAATG-ATTTTTT
66 GTATTTTGAAAATAGGAGAATTTCAAAGAAAAAATGAAAAACTCATGAAAATAAATGAATTTTTC
*
113790 AAAAATTGATTTAATATGAATTAAATGATAATATTTG
131 AAAAA-TGATTT-ATATGAATTAAATGATGATATTTG
* ** * * *
113827 ATGAATTTTAAAAATTAAAAACTAAGAAAAATCCCCTTGAAAAGATTTACAGAGTAAAAAACTTC
1 ATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACTCC
113892 GTATTT
66 GTATTT
113898 CAGAGACAAG
Statistics
Matches: 351, Mismatches: 48, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
165 76 0.22
166 274 0.78
167 1 0.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.30
Consensus pattern (165 bp):
ATGAATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACTCC
GTATTTTGAAAATAGGAGAATTTCAAAGAAAAAATGAAAAACTCATGAAAATAAATGAATTTTTC
AAAAATGATTTATATGAATTAAATGATGATATTTG
Found at i:113937 original size:166 final size:163
Alignment explanation
Indices: 113275--113993 Score: 635
Period size: 166 Copynumber: 4.3 Consensus size: 163
113265 ATAAAAAAAT
* ** * * * * * *
113275 AAAAAAAATTGATTTTTGCAAAACTAATTTAATTTGAGTTTAATAAAAATATTAT-ATGAATTTT
1 AAAATAAA-TGATTTTTTAAAAACTGATTTAATATGAATTAAATGATAATATT-TGATGAATTTT
* * * ** ** * * * * * *
113339 AAAAATTTTAAATTGAGAAAAATCCCCTCAAAAACATTTATGGAATAGAAGACTTAGTTTTTCGA
64 AAAAATTATAAACTAAGAAAAATCCCCTTGAAAACATTTACAGAGTAAAAAACTTCGTATTTAGA
* * *
113404 AAATAAGGA-ATTTCAAAGAAAAAATGAAAAACTTATG
129 AAA-CAGGAGA-TTCTAA-AAAAAATGAAAAACTCATG
*** * * * * *
113441 AAAATAAATGAAAATTTCAAAACTGATTTACTTTGAATCAAATGATGATATTTGATGAATTTTAA
1 AAAATAAATGATTTTTTAAAAACTGATTTAATATGAATTAAATGATAATATTTGATGAATTTTAA
* * * * * *
113506 AAATTATAAACCAAGAAAAATCCCCTCGAAAACATTTACGGAGTAGAAAACTCCGTATTTTGAAA
66 AAATTATAAACTAAGAAAAATCCCCTTGAAAACATTTACAGAGTAAAAAACTTCGTATTTAGAAA
*
113571 ATAGGAGAATT-TCAAGGAAAAAATGAAAAACTCATG
131 ACAGGAG-ATTCT-AA--AAAAAATGAAAAACTCATG
* * * * * * *
113607 AAAATAAATGAATTTTTCAAAAA-GGATTTGATATGAGTTAAATGATGATATTTAATTAATTTTA
1 AAAATAAATG-ATTTTTTAAAAACTGATTTAATATGAATTAAATGATAATATTTGATGAATTTTA
* *
113671 AAAATTATAAACTAAGAAAAATCCCCTTAAAAACATTTACAGAATAAAAAAC-TCTGTATTTAGA
65 AAAATTATAAACTAAGAAAAATCCCCTTGAAAACATTTACAGAGTAAAAAACTTC-GTATTTAGA
* *
113735 AAACAGGAAAATTTCAAAAAAAAAATGAAAAACTCATG
129 AAACAGG-AGA-TTC-TAAAAAAAATGAAAAACTCATG
* *
113773 AAAATGAATGATTTTTTAAAAATTGATTTAATATGAATTAAATGATAATATTTGATGAATTTTAA
1 AAAATAAATGATTTTTTAAAAACTGATTTAATATGAATTAAATGATAATATTTGATGAATTTTAA
* *
113838 AAATTAAAAACTAAGAAAAATCCCCTTGAAAAGATTTACAGAGTAAAAAACTTCGTATTTCAGAG
66 AAATTATAAACTAAGAAAAATCCCCTTGAAAACATTTACAGAGTAAAAAACTTCGTATTT-AGA-
* * *
113903 ACAAGAGG-GATTCTAAAAGAAAATCAATAACTCAT-
129 A-AACAGGAGATTCTAAAA-AAAATGAAAAACTCATG
* * * * *
113938 AAAATAAAAAGAATCTTTCAAAACTGATTTAATGGTG-ATTAAATGATAATATTTGA
1 AAAAT-AAATGATTTTTTAAAAACTGATTTAAT-ATGAATTAAATGATAATATTTGA
113994 AGAACTTTGA
Statistics
Matches: 458, Mismatches: 76, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
164 5 0.01
165 122 0.27
166 305 0.67
167 18 0.04
168 3 0.01
169 5 0.01
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.31
Consensus pattern (163 bp):
AAAATAAATGATTTTTTAAAAACTGATTTAATATGAATTAAATGATAATATTTGATGAATTTTAA
AAATTATAAACTAAGAAAAATCCCCTTGAAAACATTTACAGAGTAAAAAACTTCGTATTTAGAAA
ACAGGAGATTCTAAAAAAAATGAAAAACTCATG
Found at i:113959 original size:332 final size:330
Alignment explanation
Indices: 113333--113991 Score: 794
Period size: 332 Copynumber: 2.0 Consensus size: 330
113323 ATATTATATG
* * * ** * * *
113333 AATTTTAAAAATTTTAAATTGAGAAAAATCCCCTCAAAAACATTTATGGAATAGAAGACTTAGTT
1 AATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACTTAGTA
* * * *
113398 TTTCGAAAATAAGGAATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATGAAAATTTCAAAA
66 TTTAGAAAATAAGGAATTTCAAAAAAAAAATGAAAAACTCATGAAAATAAATGAAAATTTAAAAA
* * * *
113463 CTGATTTACTTTGAATCAAATGATGATATTTGATGAATTTTAAAAATTATAAACCAAGAAAAATC
131 CTGATTTAATATGAATCAAATGATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATC
* * * *
113528 CCCTCGAAAACATTTACGGAGTAGAAAACTCCGTATTTTGAAAATAGGAGAATTTCAAGGAAAAA
196 CCCTCGAAAACATTTACAGAGTAAAAAACTCCGTATTTAGAAAAGAGGAGAATTTCAA-GAAAAA
* * * * *
113593 ATGAAAAACTCATGAAAATAAATGAATTTTTCAAAAAGGATTTGAT-ATGAGTTAAATGATGATA
260 ATCAAAAACTCATGAAAATAAAAGAATCTTTCAAAAAGGATTTAATGATGA-TTAAATGATAATA
113657 TTTAATT
324 TTTAATT
*
113664 AATTTTAAAAATTATAAACTAAGAAAAATCCCCTTAAAAACATTTACAGAATAAAAAACTCT-GT
1 AATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACT-TAGT
* * ***
113728 ATTTAGAAAA-CAGGAAAATTTCAAAAAAAAAATGAAAAACTCATGAAAATGAATGATTTTTTAA
65 ATTTAGAAAATAAGG--AATTTCAAAAAAAAAATGAAAAACTCATGAAAATAAATGAAAATTTAA
* * *
113792 AAATTGATTTAATATGAATTAAATGATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAA
128 AAACTGATTTAATATGAATCAAATGATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAA
* * *
113857 ATCCCCTTGAAAAGATTTACAGAGTAAAAAACTTCGTATTTCAGAGACAAGAGG-G-A-TTCTAA
193 ATCCCCTCGAAAACATTTACAGAGTAAAAAACTCCGTATTT-AGA-A-AAGAGGAGAATTTC-AA
* ** *
113919 -AAGAAAATCAATAACTCAT-AAAATAAAAAGAATCTTTCAAAACTGATTTAATGGTGATTAAAT
254 GAA-AAAATCAAAAACTCATGAAAAT-AAAAGAATCTTTCAAAAAGGATTTAATGATGATTAAAT
113982 GATAATATTT
317 GATAATATTT
113992 GAAGAACTTT
Statistics
Matches: 277, Mismatches: 41, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
330 3 0.01
331 69 0.25
332 190 0.69
333 8 0.03
334 2 0.01
335 5 0.02
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (330 bp):
AATTTTAAAAATTATAAACTAAGAAAAATCCCCTCAAAAACATTTACAGAATAAAAAACTTAGTA
TTTAGAAAATAAGGAATTTCAAAAAAAAAATGAAAAACTCATGAAAATAAATGAAAATTTAAAAA
CTGATTTAATATGAATCAAATGATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATC
CCCTCGAAAACATTTACAGAGTAAAAAACTCCGTATTTAGAAAAGAGGAGAATTTCAAGAAAAAA
TCAAAAACTCATGAAAATAAAAGAATCTTTCAAAAAGGATTTAATGATGATTAAATGATAATATT
TAATT
Found at i:114399 original size:11 final size:11
Alignment explanation
Indices: 114383--114407 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
114373 CTAATTTTTC
114383 AAAATTTTCAA
1 AAAATTTTCAA
114394 AAAATTTTCAA
1 AAAATTTTCAA
114405 AAA
1 AAA
114408 TAGAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTTTCAA
Found at i:123025 original size:32 final size:32
Alignment explanation
Indices: 122984--123061 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
122974 ACAAACAGTA
122984 AATGTATCGATACATAAGTGTTGTACCGATAC
1 AATGTATCGATACATAAGTGTTGTACCGATAC
* *
123016 AATGTATCGATATATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTACCGATAC
*
123048 AATGTATCGCTACA
1 AATGTATCGATACA
123062 AAGCTACTGC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTACCGATAC
Found at i:123103 original size:20 final size:20
Alignment explanation
Indices: 123078--123115 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
123068 CTGCCAAGGA
123078 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
*
123098 AATGTATTGATACATTAT
1 AATGTATCGATACATTAT
123116 ATCGATACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:123137 original size:33 final size:33
Alignment explanation
Indices: 123082--123146 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
123072 CAAGGAAATG
*
123082 TATCGATACATTATTCAATGTATTGATACATTA
1 TATCGATACATTATTCAATGTATCGATACATTA
**
123115 TATCGATACATTGA-TCTTTGTATCGATACATT
1 TATCGATACATT-ATTCAATGTATCGATACATT
123147 TGAAAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (33 bp):
TATCGATACATTATTCAATGTATCGATACATTA
Found at i:129604 original size:78 final size:78
Alignment explanation
Indices: 129486--129691 Score: 225
Period size: 78 Copynumber: 2.6 Consensus size: 78
129476 GAGATAATAA
* * * * * * * *
129486 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTCGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
129551 -TTAGAAAAAAAAT
65 TTTAGAAAAAAAAC
* * *
129564 CGGGATTGGAGTATCCCCTCGAAAATAACGGAGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-
* * * *
129629 TTTGGGAATAAAGC
65 TTTAGAAAAAAAAC
* *
129643 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
129692 GAAATAACGA
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
77 1 0.01
78 52 0.50
79 52 0.50
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAC
Found at i:129683 original size:28 final size:28
Alignment explanation
Indices: 129643--129714 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
129633 GGAATAAAGC
** *
129643 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
129671 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
129699 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
129715 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:129773 original size:53 final size:51
Alignment explanation
Indices: 129703--129877 Score: 188
Period size: 52 Copynumber: 3.4 Consensus size: 51
129693 AAATAACGAG
* * *
129703 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGG--TGTTTTGGAAATAAAACCGGA
** * * * * *
129756 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAACAAAACCGGG
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGGAAATAAAACCGGA
* * *
129808 GTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTGGAAATAAAACCGGA
*
129860 GTTGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
129878 ATGGAGAATT
Statistics
Matches: 99, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
52 73 0.74
53 17 0.17
54 9 0.09
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGGA
Found at i:133010 original size:55 final size:54
Alignment explanation
Indices: 132915--133681 Score: 1116
Period size: 55 Copynumber: 14.0 Consensus size: 54
132905 ATAAAGTGTA
* * * *
132915 TCCTGCTCATTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGG
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGG-TG
* *
132971 T-CTGGTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
133025 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
133080 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
133135 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
133190 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
133245 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTG-AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
133300 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
133355 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
133410 TCCTGCTCTTTGAGGACTGGAAAATGCCACAAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
133465 TCCTGCTCTTTGAGGATTGAAAAATGCCACCAACTTGTGT-GGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTG-AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
133519 TCCTGCTCTTTGAGGACTGAAAGCTACCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
133574 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
133629 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TCCTGCTCTTTGAGGACTG-AAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
133682 AGAAGGCGTC
Statistics
Matches: 649, Mismatches: 37, Indels: 51
0.88 0.05 0.07
Matches are distributed among these distances:
53 3 0.00
54 73 0.11
55 542 0.84
56 31 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:133100 original size:26 final size:26
Alignment explanation
Indices: 133071--133215 Score: 73
Period size: 26 Copynumber: 5.3 Consensus size: 26
133061 GTGTGGGCTT
133071 TGAAAGGTGTCCTGCTCTTTGGGGAC
1 TGAAAGGTGTCCTGCTCTTTGGGGAC
** *
133097 TGAAAGGTG-CCACCAACTTGTGTGGG-C
1 TGAAAGGTGTCCTGC-TCTT-TG-GGGAC
* *
133124 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGGGGAC
* ** * * *
133152 TGGAAA-ATG-CCACCAACTTGGGTGGGC
1 T-GAAAGGTGTCCTGC-TCTTTGG-GGAC
133179 TTTGAAAGGTGTCCTGCTCTTTGGGGAC
1 --TGAAAGGTGTCCTGCTCTTTGGGGAC
133207 TGAAAGGTG
1 TGAAAGGTG
133216 CCACCAACTT
Statistics
Matches: 83, Mismatches: 22, Indels: 28
0.62 0.17 0.21
Matches are distributed among these distances:
25 6 0.07
26 27 0.33
27 10 0.12
28 18 0.22
29 16 0.19
30 6 0.07
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGGGGAC
Found at i:133134 original size:29 final size:28
Alignment explanation
Indices: 132989--133409 Score: 109
Period size: 28 Copynumber: 15.2 Consensus size: 28
132979 TTGAGGACTG
132989 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
133017 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
*
133045 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
133072 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
133099 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
133127 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
133155 AAA-ATGCCACCAACTTGGGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
133182 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
133209 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
133237 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
**
133264 AAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
* * * **
133292 GAAAGGTGTCCTA-C-TCTT-TGAGGACTGG
1 -AAAGGTG-CC-ACCAACTTGTGTGGGCTTT
*
133320 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
133347 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
133374 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
133402 AAGAGGTG
1 AA-AGGTG
133410 TCCTGCTCTT
Statistics
Matches: 263, Mismatches: 86, Indels: 87
0.60 0.20 0.20
Matches are distributed among these distances:
24 1 0.00
25 21 0.08
26 51 0.19
27 51 0.19
28 65 0.25
29 52 0.20
30 21 0.08
31 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (28 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:133484 original size:26 final size:26
Alignment explanation
Indices: 133455--133541 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
133445 TGGGTGGGCT
133455 TTGAAAGGTGTCCTGCTCTTTGAGGA
1 TTGAAAGGTGTCCTGCTCTTTGAGGA
** ** * * *
133481 TTGAAAAATG-CCACCAACTTGTGTGGCT
1 TTGAAAGGTGTCCTGC-TCTT-TGAGG-A
133509 TTGAAAGGTGTCCTGCTCTTTGAGGA
1 TTGAAAGGTGTCCTGCTCTTTGAGGA
*
133535 CTGAAAG
1 TTGAAAG
133542 CTACCACCAA
Statistics
Matches: 42, Mismatches: 15, Indels: 8
0.65 0.23 0.12
Matches are distributed among these distances:
25 3 0.07
26 17 0.40
27 8 0.19
28 11 0.26
29 3 0.07
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (26 bp):
TTGAAAGGTGTCCTGCTCTTTGAGGA
Found at i:147227 original size:79 final size:79
Alignment explanation
Indices: 147121--147322 Score: 226
Period size: 79 Copynumber: 2.6 Consensus size: 79
147111 AATAACGTGG
* * * * * * * *
147121 TTGGAGTGTTCCCTTGAAAATAACGGGGCTCGAGTATCCCCGGTTGTGAGAAATCGATGA-TTAG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTAG
*
147185 AAAAAAAAATCGGGA
65 AAAAAAAAACCGGGA
* * *
147200 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
* * * *
147265 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* *
147279 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
147323 GAAATAACGA
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 1 0.01
79 102 0.99
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAAACCGGGA
Found at i:147314 original size:28 final size:28
Alignment explanation
Indices: 147274--147345 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
147264 GGAATAAAGC
** *
147274 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
147302 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
147330 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
147346 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:147404 original size:53 final size:51
Alignment explanation
Indices: 147334--147511 Score: 194
Period size: 52 Copynumber: 3.4 Consensus size: 51
147324 AAATAACGAG
* * *
147334 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGG--TGTTTTGGAAATAAAACCGGA
** * * * * *
147387 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAACAAAACCGGG
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGGAAATAAAACCGGA
* * *
147439 GTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTGGAAATAAAACCGGA
*
147491 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
147512 GAGAATTGAG
Statistics
Matches: 102, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
51 1 0.01
52 75 0.74
53 17 0.17
54 9 0.09
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGGA
Found at i:149876 original size:13 final size:13
Alignment explanation
Indices: 149858--149883 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
149848 ACAAAGATCC
149858 ATGTATCGATACA
1 ATGTATCGATACA
149871 ATGTATCGATACA
1 ATGTATCGATACA
149884 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:149879 original size:33 final size:33
Alignment explanation
Indices: 149837--149903 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
149827 AAAATTTCCA
***
149837 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
149870 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
149903 A
1 A
149904 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:149947 original size:19 final size:18
Alignment explanation
Indices: 149923--149990 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
149913 CAGTAGCTAA
149923 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
149942 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
149957 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
149974 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
149991 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:149963 original size:13 final size:13
Alignment explanation
Indices: 149945--149969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
149935 ACAATACTTA
149945 TGTATCGATACAT
1 TGTATCGATACAT
149958 TGTATCGATACA
1 TGTATCGATACA
149970 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:149967 original size:32 final size:32
Alignment explanation
Indices: 149926--149988 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
149916 TAGCTAATTA
*
149926 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
149958 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
149989 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Done.