Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold96
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1013983
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 8
Found at i:683034 original size:57 final size:55
Alignment explanation
Indices: 682929--683119 Score: 247
Period size: 55 Copynumber: 3.4 Consensus size: 55
682919 AAAGGAGAGA
** * * *
682929 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTTTGGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTATGGGCTTTGAAAG
* *
682984 GCGTCCTGCTCTTCGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACT--AAAAAATGCCACCAACTTGTATGGGCTTTGAAAG
* * * *
683041 GCATCCTGCTCTTTGAGGACTGAAAGATGCCACCAACTTGTATGGGTTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTATGGGCTTTGAAAG
* *
683096 GTGTCTTGCTCTTTGAGGACTAAA
1 GCGTCCTGCTCTTTGAGGACTAAA
683120 GGGTGAAAGG
Statistics
Matches: 118, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
55 70 0.59
57 48 0.41
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTATGGGCTTTGAAAG
Found at i:683074 original size:206 final size:204
Alignment explanation
Indices: 682715--683190 Score: 713
Period size: 206 Copynumber: 2.3 Consensus size: 204
682705 GTGGTCTTTA
* * * * * * *
682715 AAAGGAGAAAGCATCCTGCTTTTTGAGGA-TTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAA
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * ** *
682779 GGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCCTCCTGC
65 GGCGTCCTGCTCTTCGAGGACTAAAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGC
* * *
682844 TCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGACGTTTTGCTCTTTGAGGA
130 TCTTTGAGGACTGAAAGATGCCACCAACTTATATGGGCTTTGAAAGACGTCTTGCTCTTTGAGGA
682909 CTAAAGGGTG
195 CTAAAGGGTG
*
682919 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTTTGGGCTTTAAAAG
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
682984 GCGTCCTGCTCTTCGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTG
66 GCGTCCTGCTCTTCGAGGACT--AAAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTG
* * **
683049 CTCTTTGAGGACTGAAAGATGCCACCAACTTGTATGGGTTTTGAAAGGTGTCTTGCTCTTTGAGG
129 CTCTTTGAGGACTGAAAGATGCCACCAACTTATATGGGCTTTGAAAGACGTCTTGCTCTTTGAGG
683114 ACTAAAGGGTG
194 ACTAAAGGGTG
683125 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTA-GAAGTTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAG-TGCCACCAACTTGTGTGGGCTTTAAAA
683189 GG
65 GG
683191 AAAAGGCGTC
Statistics
Matches: 246, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
204 73 0.30
205 6 0.02
206 167 0.68
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (204 bp):
AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
GCGTCCTGCTCTTCGAGGACTAAAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCT
CTTTGAGGACTGAAAGATGCCACCAACTTATATGGGCTTTGAAAGACGTCTTGCTCTTTGAGGAC
TAAAGGGTG
Found at i:684204 original size:10 final size:10
Alignment explanation
Indices: 684188--684236 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
684178 GCTTAAGTAA
684188 GTTCTTTTTT
1 GTTCTTTTTT
*
684198 TTTCTTTTTT
1 GTTCTTTTTT
684208 GTT-TTTTTT
1 GTTCTTTTTT
*
684217 GTTGTTTTTT
1 GTTCTTTTTT
*
684227 GTTGTTTTTT
1 GTTCTTTTTT
684237 TAAAAAGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
9 9 0.25
10 27 0.75
ACGTcount: A:0.00, C:0.04, G:0.12, T:0.84
Consensus pattern (10 bp):
GTTCTTTTTT
Found at i:684212 original size:12 final size:11
Alignment explanation
Indices: 684192--684237 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
684182 AAGTAAGTTC
*
684192 TTTTTT-TTTC
1 TTTTTTGTTTT
684202 TTTTTTGTTTT
1 TTTTTTGTTTT
684213 TTTTGTTG-TTT
1 TTTT-TTGTTTT
*
684224 TTTGTTGTTTT
1 TTTTTTGTTTT
684235 TTT
1 TTT
684238 AAAAAGAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 9 0.29
11 19 0.61
12 3 0.10
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:684216 original size:19 final size:20
Alignment explanation
Indices: 684192--684237 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
684182 AAGTAAGTTC
684192 TTTTTTTTTCTTTTTTGTT-
1 TTTTTTTTTCTTTTTTGTTG
* *
684211 TTTTTTGTTGTTTTTTGTTG
1 TTTTTTTTTCTTTTTTGTTG
684231 TTTTTTT
1 TTTTTTT
684238 AAAAAGAAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (20 bp):
TTTTTTTTTCTTTTTTGTTG
Found at i:687738 original size:13 final size:13
Alignment explanation
Indices: 687720--687744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
687710 TTCAACGATT
687720 TGTATCGATACAA
1 TGTATCGATACAA
687733 TGTATCGATACA
1 TGTATCGATACA
687745 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:687781 original size:19 final size:19
Alignment explanation
Indices: 687733--687782 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
687723 ATCGATACAA
687733 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
* * *
687752 TGTAACAATACATAAGTTT
1 TGTATCGATACATAAGTGT
687771 TGTATCGATACA
1 TGTATCGATACA
687783 ATGTATCGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:687912 original size:52 final size:52
Alignment explanation
Indices: 687855--687983 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
687845 CACTGATCTT
*
687855 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATGGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
** * *
687907 TGTATCGATACATATAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
687959 TGTATCGAAACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
687984 TCATATTTCG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:703852 original size:79 final size:78
Alignment explanation
Indices: 703721--703973 Score: 278
Period size: 79 Copynumber: 3.2 Consensus size: 78
703711 ACCACGGGGC
* * * *
703721 TGGAGTATCCCCGATTATGGAAAATCGGTACTTTGGAAATAAAATC-AGGGTTGGAGTATACCCT
1 TGGAGTATCCCCGATTATAGAAAATCGATACTTTGAAAATAAAATCGA-GGTTGGAGTATCCCCT
703785 TAAAAATAATAGGGT
65 TAAAAATAA-AGGGT
* * *
703800 TGGAGTATCCCTGATTATAGAAAATCGATATTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTC
1 TGGAGTATCCCCGATTATAGAAAATCGATACTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTT
*
703865 AAAAATAACGGGGT
66 AAAAATAA-AGGGT
* * ** *
703879 TGGAGTATCCCCGATTGTTA-AAAATCGATGCTTT-AGAAATAAGGTCGGGGTTGGAGTATCCCC
1 TGGAGTATCCCCGATT-ATAGAAAATCGATACTTTGA-AAATAAAATCGAGGTTGGAGTATCCCC
* * *
703942 GTGAAAATAACGAGGT
64 TTAAAAATAAAG-GGT
*
703958 TGGAGTATCCCTGATT
1 TGGAGTATCCCCGATT
703974 GTGAGAAATT
Statistics
Matches: 149, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
78 2 0.01
79 144 0.97
80 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
TGGAGTATCCCCGATTATAGAAAATCGATACTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTT
AAAAATAAAGGGT
Found at i:704213 original size:28 final size:28
Alignment explanation
Indices: 704164--704235 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
704154 ATAAAGCTGG
* *
704164 GGTTGGAGTATCTCCTTGGAAATAACGA
1 GGTTGGAGTATCCCCATGGAAATAACGA
*
704192 GGTTGGAGTATCCCCGAT-GAAATAACGG
1 GGTTGGAGTATCCCC-ATGGAAATAACGA
704220 GGTTGGAGTATCCCCA
1 GGTTGGAGTATCCCCA
704236 ATTGTGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 38 0.95
29 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (28 bp):
GGTTGGAGTATCCCCATGGAAATAACGA
Found at i:704389 original size:51 final size:51
Alignment explanation
Indices: 704221--704364 Score: 198
Period size: 51 Copynumber: 2.8 Consensus size: 51
704211 AAATAACGGG
* **
704221 GTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATCAGA
** * * * *
704272 GTTGGAGTATCGTCGATTACGGAAAATTGATGCTTTAGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATCAGA
*
704323 GTTTGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAAT
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAAT
704365 GGAACCGAGA
Statistics
Matches: 78, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 78 1.00
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATCAGA
Found at i:706725 original size:16 final size:16
Alignment explanation
Indices: 706704--706738 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
706694 ATCTGGGTAA
706704 GTATCGATATATCTGG
1 GTATCGATATATCTGG
706720 GTATCGATATATCTGG
1 GTATCGATATATCTGG
706736 GTA
1 GTA
706739 AACCTAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (16 bp):
GTATCGATATATCTGG
Found at i:709019 original size:32 final size:33
Alignment explanation
Indices: 708959--709027 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
708949 TTCAACGATT
*
708959 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATAGATACATAAAGTGTTGTATCGATACAA
*
708992 TGTATAGATACAT-AAGTTTTGTATCGATACAA
1 TGTATAGATACATAAAGTGTTGTATCGATACAA
709024 TGTA
1 TGTA
709028 AGCTACTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 22 0.65
33 12 0.35
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (33 bp):
TGTATAGATACATAAAGTGTTGTATCGATACAA
Found at i:709220 original size:47 final size:49
Alignment explanation
Indices: 709098--709221 Score: 189
Period size: 52 Copynumber: 2.5 Consensus size: 49
709088 CACTGATCTT
709098 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACAC-AT--AA
*
709150 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACAC-T-A
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACATAA
*
709197 TGTATCGATACATGCAGGAAAATTT
1 TGTATCGATACATGCAGGCAAATTT
709222 TCATATTTCG
Statistics
Matches: 70, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
47 25 0.36
50 1 0.01
52 44 0.63
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (49 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACATAA
Found at i:723119 original size:7 final size:7
Alignment explanation
Indices: 723114--723186 Score: 89
Period size: 7 Copynumber: 10.4 Consensus size: 7
723104 AGAAAAAAAC
723114 AAAA-AA
1 AAAACAA
723120 AAAACAA
1 AAAACAA
723127 AAAACAA
1 AAAACAA
723134 AAAACAA
1 AAAACAA
723141 AAAACAAA
1 AAAAC-AA
723149 AAAACAA
1 AAAACAA
*
723156 AGAA-AA
1 AAAACAA
723162 AAAAC-A
1 AAAACAA
723168 AAAACAA
1 AAAACAA
723175 CAACAACAA
1 -AA-AACAA
723184 AAA
1 AAA
723187 GGGTCCGGAT
Statistics
Matches: 59, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
6 15 0.25
7 28 0.47
8 11 0.19
9 5 0.08
ACGTcount: A:0.85, C:0.14, G:0.01, T:0.00
Consensus pattern (7 bp):
AAAACAA
Found at i:723123 original size:32 final size:31
Alignment explanation
Indices: 723071--723186 Score: 101
Period size: 32 Copynumber: 3.6 Consensus size: 31
723061 CGTCCTCCAC
* * * *
723071 AAAAAAAAAACCAAATAAAAAA-AAAGAAGA
1 AAAAAAAAAAACAAAAAAAAAACAAAAAACA
*
723101 AGAAGAAAAAAACAAAAAAAAAACAAAAAACA
1 A-AAAAAAAAAACAAAAAAAAAACAAAAAACA
*
723133 AAAAACAAAAAACAAAAAAACAAAGAAAAAA-A
1 AAAAA-AAAAAACAAAAAAA-AAACAAAAAACA
* *
723165 ACAAAAACAACAACAACAAAAA
1 A-AAAAA-AAAAACAAAAAAAA
723187 GGGTCCGGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
30 1 0.01
31 21 0.30
32 25 0.35
33 24 0.34
ACGTcount: A:0.84, C:0.11, G:0.04, T:0.01
Consensus pattern (31 bp):
AAAAAAAAAAACAAAAAAAAAACAAAAAACA
Found at i:723182 original size:9 final size:9
Alignment explanation
Indices: 723108--723183 Score: 56
Period size: 9 Copynumber: 8.9 Consensus size: 9
723098 AGAAGAAGAA
723108 AAAAACAA-
1 AAAAACAAC
*
723116 AAAAAAAAC
1 AAAAACAAC
723125 -AAAA-AAC
1 AAAAACAAC
723132 -AAAA-AAC
1 AAAAACAAC
723139 AAAAAACAA-
1 -AAAAACAAC
*
723148 AAAAACAAAG
1 AAAAAC-AAC
*
723158 AAAAAAAAC
1 AAAAACAAC
723167 AAAAACAAC
1 AAAAACAAC
*
723176 AACAACAA
1 AAAAACAA
723184 AAAGGGTCCG
Statistics
Matches: 57, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
7 10 0.18
8 17 0.30
9 23 0.40
10 7 0.12
ACGTcount: A:0.84, C:0.14, G:0.01, T:0.00
Consensus pattern (9 bp):
AAAAACAAC
Found at i:723186 original size:1 final size:1
Alignment explanation
Indices: 723071--723171 Score: 67
Period size: 1 Copynumber: 101.0 Consensus size: 1
723061 CGTCCTCCAC
** * * * * * * * *
723071 AAAAAAAAAACCAAATAAAAAAAAAGAAGAAGAAGAAAAAAACAAAAAAAAAACAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
723136 AACAAAAAACAAAAAAACAAAGAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
723172 CAACAACAAC
Statistics
Matches: 72, Mismatches: 28, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.85, C:0.09, G:0.05, T:0.01
Consensus pattern (1 bp):
A
Found at i:723186 original size:21 final size:19
Alignment explanation
Indices: 723069--723177 Score: 101
Period size: 21 Copynumber: 5.2 Consensus size: 19
723059 GGCGTCCTCC
723069 ACAAAAAAAAAACCAAATAAA
1 ACAAAAAAAAAA-CAAA-AAA
* *
723090 AAAAAAGAAGAAGAAGAAAAAA
1 ACAAAA-AA-AA-AACAAAAAA
723112 ACAAAAAAAAAACAAAAAA
1 ACAAAAAAAAAACAAAAAA
*
723131 CAAAAAACAAAAAACAAAAAA
1 -ACAAAA-AAAAAACAAAAAA
723152 ACAAAGAAAAAAAACAAAAACA
1 AC-AA-AAAAAAAACAAAAA-A
723174 ACAA
1 ACAA
723178 CAACAAAAAG
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
19 8 0.11
20 8 0.11
21 36 0.49
22 15 0.20
23 5 0.07
24 2 0.03
ACGTcount: A:0.83, C:0.11, G:0.05, T:0.01
Consensus pattern (19 bp):
ACAAAAAAAAAACAAAAAA
Found at i:724693 original size:58 final size:57
Alignment explanation
Indices: 724618--725087 Score: 462
Period size: 58 Copynumber: 8.0 Consensus size: 57
724608 ATTCCTCACC
* * * *
724618 TTTCAAAAGCCCACAAGTTAGTGGCAACCTTCAAAGTCCACAAATTAGTGGCACCCT
1 TTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAGTTAGTGGCACCCT
* * *
724675 TCTCCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCT
1 T-TTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAGTTAGTGGCACCCT
* * *
724733 TTTCCCAAAGCCCATAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCACTCT
1 TTT-CCAAAGCCCACAAGTCAGTGGCAACCTTC-AAAGCCCACAAGTTAGTGGCACCCT
* * * *
724792 TTTTCAAAGCCCACAAATCAGTGGCACCCTTCTCCCAAAGCCCACAAGTCAGTGGCACCCT
1 TTTCCAAAGCCCACAAGTCAGTGGCAACC-T-T--CAAAGCCCACAAGTTAGTGGCACCCT
** *
724853 TTTCCAAAATCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTTAGTGGCACTCT
1 TTTCCAAAGCCCACAAGTCAGTGGCAACCTTC-AAAGCCCACAAGTTAGTGGCACCCT
* * * * *
724911 TTTTCAAAGCCCACAAATTAGTGGCACCCTTCTCCCAAAGCCCACAAGTTAGTGGCAACC-
1 TTTCCAAAGCCCACAAGTCAGTGGCAACC-T-T--CAAAGCCCACAAGTTAGTGGCACCCT
* * * *
724971 -TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCATAAGTTAGTGGCAACC-
1 TTTCCAAAGCCCACAAGTCAGTGGCAACC--TT-CAAAGCCCACAAGTTAGTGGCACCCT
* * * * * * *
725029 -TTCAAAAGCCCACAAGTTAGTGGTATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCT
1 TTTCCAAAGCCCACAAGTCAGTGGCAAC-CTTC-AAAGCCCACAAGTTAGTGGCACCCT
725087 T
1 T
725088 CAAAAGCACA
Statistics
Matches: 356, Mismatches: 40, Indels: 32
0.83 0.09 0.07
Matches are distributed among these distances:
56 1 0.00
57 27 0.08
58 197 0.55
59 54 0.15
60 5 0.01
61 70 0.20
62 2 0.01
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.21
Consensus pattern (57 bp):
TTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAGTTAGTGGCACCCT
Found at i:724798 original size:89 final size:88
Alignment explanation
Indices: 724619--725128 Score: 519
Period size: 89 Copynumber: 5.8 Consensus size: 88
724609 TTCCTCACCT
* * * * * * *
724619 TTCAAAAGCCCACAAGTTAGTGGCAACC--TT-CAAAGTCCACAAATTAGTGGCACCCTTCTCCC
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTT-TCCA
724681 AAAGCCCACAAGTCAGTGGCAACC
65 AAAGCCCACAAGTCAGTGGCAACC
* *
724705 TTC-AAAGCCCACAAATCAGTGGCACCCTTTTCCCAAAGCCCATAAGTCAGTGGCAACC-TT-CA
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTT-CCAAAGCCCACAAGTCAGTGGCAACCTTTCCA
724767 AAAGCCCACAAGTCAGTGGC-ACTC
65 AAAGCCCACAAGTCAGTGGCAAC-C
* * *
724791 TTTTTC-AAAGCCCACAAATCAGTGGCACCCTTCTCCCAAAGCCCACAAGTCAGTGGCACCCTTT
1 ---TTCAAAAGCCCACAAGTCAGTGGCACCCTT-TTCCAAAGCCCACAAGTCAGTGGCAACC-TT
*
724855 TCCAAAA-TCCACAAGTCAGTGGCAACC
61 TCCAAAAGCCCACAAGTCAGTGGCAACC
* * * * * * *
724882 TTCAAAAGCCCACAAGTTAGTGGCACTCTTTTTCAAAGCCCACAAATTAGTGGCACCCTTCTCCC
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTT-TCCA
*
724947 AAAGCCCACAAGTTAGTGGCAACC
65 AAAGCCCACAAGTCAGTGGCAACC
* *
724971 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCATAAGTTAGTGGCAACC-TT-CAA
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTTCCAA
* * * *
725034 AAGCCCACAAGTTAGTGGTATCTT
66 AAGCCCACAAGTCAGTGGCAAC-C
* * * ** *
725058 TTCAAAAGCCCACAAGTCAGTGGCAACC--TTCAAAAGCACACAAGTTGGT-GCAACCCTAT-CA
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA-CCTTTCCA
725119 AAAGCCCACA
65 AAAGCCCACA
725129 CAAGTTGGTG
Statistics
Matches: 366, Mismatches: 39, Indels: 38
0.83 0.09 0.09
Matches are distributed among these distances:
84 4 0.01
85 42 0.11
86 60 0.16
87 33 0.09
88 35 0.10
89 166 0.45
90 1 0.00
91 18 0.05
92 7 0.02
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (88 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTTCCAA
AAGCCCACAAGTCAGTGGCAACC
Found at i:724890 original size:147 final size:147
Alignment explanation
Indices: 724619--725087 Score: 548
Period size: 147 Copynumber: 3.2 Consensus size: 147
724609 TTCCTCACCT
* *
724619 TTCAAAAGCCCACAAGTTAGTGGCAACC---TTCAAAGTCCACAAATTAGTGGCACCCTTCTCCC
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTTTTTCAAAGCCCACAAATTAGTGGCACCCTTCTCCC
* * * *
724681 AAAGCCCACAAGTCAGTGGCAACC--TT-CAAAGCCCACAAATCAGTGGCACCCTTTTCCCAAAG
65 AAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACC--TT-CAAAAG
* *
724743 CCCATAAGTCAGTGGCAAC-C
127 CCCACAAGTTAGTGGCAACTC
*
724763 TTCAAAAGCCCACAAGTCAGTGGCACTCTTTTTCAAAGCCCACAAATCAGTGGCACCCTTCTCCC
1 TTCAAAAGCCCACAAGTCAGTGGCAC-CTTTTTCAAAGCCCACAAATTAGTGGCACCCTTCTCCC
**
724828 AAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAATCCACAAGTCAGTGGCAACCTTCAAAAGCCC
65 AAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCC
724893 ACAAGTTAGTGGC-ACTC
130 ACAAGTTAGTGGCAACTC
* * ** * *
724910 TTTTTC-AAAGCCCACAAATTAGTGGCACCCTTCTCCCAAAGCCCACAAGTTAGTGGCAACC-T-
1 ---TTCAAAAGCCCACAAGTCAGTGGCA-CCTT-TTTCAAAGCCCACAAATTAGTGGCACCCTTC
* * *
724972 T-CAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCATAAGTTAGTGGCAACCTTCAAAA
61 TCCCAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAA
* * *
725036 GCCCACAAGTTAGTGGTATCTT
126 GCCCACAAGTTAGTGGCAACTC
725058 TTCAAAAGCCCACAAGTCAGTGGCAACCTT
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTT
725088 CAAAAGCACA
Statistics
Matches: 281, Mismatches: 28, Indels: 30
0.83 0.08 0.09
Matches are distributed among these distances:
143 2 0.01
144 24 0.09
145 3 0.01
146 24 0.09
147 150 0.53
148 5 0.02
149 25 0.09
150 48 0.17
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.21
Consensus pattern (147 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCTTTTTCAAAGCCCACAAATTAGTGGCACCCTTCTCCCA
AAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCA
CAAGTTAGTGGCAACTC
Found at i:725132 original size:31 final size:28
Alignment explanation
Indices: 724947--725138 Score: 126
Period size: 28 Copynumber: 6.7 Consensus size: 28
724937 CCCTTCTCCC
*
724947 AAAGCC-CACAAGTTAGTGGCAACCTTCA
1 AAAGCCACACAAGTTGGT-GCAACCTTCA
** * *
724975 AAAGCC-CACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCACACAAGTTGGT-GCAACC--TTCA
* *
725005 AAAGCC-CATAAGTTAGTGGCAACCTTCA
1 AAAGCCACACAAGTTGGT-GCAACCTTCA
* * * *
725033 AAAGCC-CACAAGTTAGTGGTATCTTTTCA
1 AAAGCCACACAAGTTGGT-GCAAC-CTTCA
**
725062 AAAGCC-CACAAGTCAGTGGCAACCTTCA
1 AAAGCCACACAAGTTGGT-GCAACCTTCA
725090 AAAG-CACACAAGTTGGTGCAACCCTATCA
1 AAAGCCACACAAGTTGGTGCAA-CCT-TCA
725119 AAAGCCCACACAAGTTGGTG
1 AAAG-CCACACAAGTTGGTG
725139 GCATCTTCTT
Statistics
Matches: 139, Mismatches: 17, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
27 5 0.04
28 65 0.47
29 31 0.22
30 24 0.17
31 14 0.10
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (28 bp):
AAAGCCACACAAGTTGGTGCAACCTTCA
Found at i:725220 original size:49 final size:49
Alignment explanation
Indices: 725154--725424 Score: 322
Period size: 49 Copynumber: 5.7 Consensus size: 49
725144 TTCTTCTCAA
* *
725154 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAG
* *
725203 TCTAATGTCGCTAGCCTTGAATCAGCACATTGGCA----C--CTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAG
* *
725246 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAG
* * *
725295 ACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAG
** * * * * *
725344 TCCGGTATCGCTGGCTTTAAATCAGCATATTGTCACCGTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAG
* *
725393 AT-CAATGTCGCTGGCCATGAAGCAGCACATTG
1 -TCCAATGTCGCTGGCCTTGAATCAGCACATTG
725425 TCATTCTTCG
Statistics
Matches: 184, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
43 38 0.21
45 1 0.01
47 1 0.01
49 143 0.78
50 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (49 bp):
TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAG
Found at i:725386 original size:98 final size:96
Alignment explanation
Indices: 725137--725433 Score: 399
Period size: 92 Copynumber: 3.1 Consensus size: 96
725127 CACAAGTTGG
725137 TGGCATCTT-CTTCTCAA-TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTT
1 TGGCATCTTCCTT-T-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTT
* * *
725200 AAGTCTAATGTCGCTAGCCTTGAATCAGCACAT
64 AAGACCAATGTCGCTGGCCTTGAATCAGCACAT
725233 TGGCA----CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAA
1 TGGCATCTTCCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAA
725294 GACCAATGTCGCTGGCCTTGAATCAGCACAT
66 GACCAATGTCGCTGGCCTTGAATCAGCACAT
** * * *
725325 TGGCATCTTCATCTTTAAGTCCGGTATCGCTGGCTTTAAATCAGCATATTGTCACCGTCATCTTT
1 TGGCATCTTC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTT
* * *
725390 AAGATCAATGTCGCTGGCCATGAAGCAGCACAT
64 AAGACCAATGTCGCTGGCCTTGAATCAGCACAT
*
725423 TGTCATTCTTC
1 TGGCA-TCTTC
725434 GCATCTTCGA
Statistics
Matches: 180, Mismatches: 12, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
91 2 0.01
92 82 0.46
93 3 0.02
96 6 0.03
98 82 0.46
99 5 0.03
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (96 bp):
TGGCATCTTCCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAA
GACCAATGTCGCTGGCCTTGAATCAGCACAT
Found at i:726206 original size:13 final size:13
Alignment explanation
Indices: 726188--726212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
726178 CATAAAGTGT
726188 TGTATCGATACAA
1 TGTATCGATACAA
726201 TGTATCGATACA
1 TGTATCGATACA
726213 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:726223 original size:32 final size:33
Alignment explanation
Indices: 726168--726231 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
726158 TTCAACGATT
726168 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
726201 TGTATCGATACAT-AAGTGTTGTATCGATACA
1 TGTATCGATACATAAAGTGTTGTATCGATACA
726232 TAAGTTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:726225 original size:19 final size:19
Alignment explanation
Indices: 726167--726250 Score: 108
Period size: 19 Copynumber: 4.7 Consensus size: 19
726157 TTTCAACGAT
726167 TTGTATCGATACATAAAGTG
1 TTGTATCGATACAT-AAGTG
726187 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
726201 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
726219 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
726238 TTGTATCGATACA
1 TTGTATCGATACA
726251 ATGTAGGCTA
Statistics
Matches: 57, Mismatches: 1, Indels: 13
0.80 0.01 0.18
Matches are distributed among these distances:
13 11 0.19
15 2 0.04
17 2 0.04
19 30 0.53
20 12 0.21
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:726290 original size:13 final size:13
Alignment explanation
Indices: 726272--726296 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
726262 TGCCAAAAAA
726272 TGTATCGATACAT
1 TGTATCGATACAT
726285 TGTATCGATACA
1 TGTATCGATACA
726297 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:726363 original size:52 final size:52
Alignment explanation
Indices: 726305--726433 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
726295 CACTGATCTT
* *
726305 TGTATCGATACATACAGGCAAATTTGCCCAAATGTATCGATGCACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAA
* * *
726357 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAA
726409 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
726434 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAA
Found at i:733735 original size:52 final size:52
Alignment explanation
Indices: 733587--733715 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
733577 CGAAATATGA
733587 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
733639 AAATTTGCCTGTATGTATCGATACATTTTATAGTCTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
733691 AAATTTGCCTGCATATATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
733716 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:733831 original size:31 final size:32
Alignment explanation
Indices: 733793--733862 Score: 124
Period size: 31 Copynumber: 2.2 Consensus size: 32
733783 AGCTTCATAG
*
733793 CGATACATTGTATCGTTACAA-ACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
733824 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
733856 CGATACA
1 CGATACA
733863 AATCGTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 20 0.54
32 17 0.46
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:733837 original size:13 final size:13
Alignment explanation
Indices: 733819--733843 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
733809 TACAAACTTA
733819 TGTATCGATACAT
1 TGTATCGATACAT
733832 TGTATCGATACA
1 TGTATCGATACA
733844 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:733856 original size:19 final size:19
Alignment explanation
Indices: 733801--733863 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
733791 AGCGATACAT
*
733801 TGTATCGTTACAA-ACTTA
1 TGTATCGATACAACACTTA
733819 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
733832 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
733851 TGTATCGATACAA
1 TGTATCGATACAA
733864 ATCGTTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
15 1 0.03
16 4 0.11
18 9 0.24
19 13 0.35
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:734618 original size:49 final size:49
Alignment explanation
Indices: 734489--735379 Score: 943
Period size: 49 Copynumber: 18.9 Consensus size: 49
734479 TTGGGTTTTA
* * *
734489 AAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* *
734538 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 ---AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
734590 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
734639 AAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGGC-T-----T-
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * * * *
734681 -A--TGCCAACGTGTTGATTCAAGGCCAACGACATTGGTCTTAAAGGTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* *
734727 AAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
734776 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
734825 AAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGGC-T-----T-
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * * * *
734867 -A--TGCCAACGTGTTGATTCAAGGCCAACGACATTGGTCTTAAAGGTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* *
734913 AAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
734962 ACAAAGGCGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTT----A--
1 ---AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
735008 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
735057 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* *
735100 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
735149 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* *
735192 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * *
735241 AAGGTGCCAATATGCTGATTAAAGGCCAGCTATATTAGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * * **
735284 AAGGTGCCAATGTGCTAATTCAAGGCTAGCGACATTGGTCTTAAAGAAAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG-ATG
* *
735334 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
735380 GAAGATGCCA
Statistics
Matches: 718, Mismatches: 73, Indels: 98
0.81 0.08 0.11
Matches are distributed among these distances:
39 66 0.09
40 2 0.00
41 2 0.00
43 151 0.21
45 5 0.01
47 5 0.01
48 4 0.01
49 358 0.50
50 40 0.06
52 85 0.12
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:734697 original size:39 final size:39
Alignment explanation
Indices: 734643--734720 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
734633 AAGATGAAGG
*
734643 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGCTTA
1 TGCCAACGTGCTGATTCAAGGCCAACGACATTGGGCTTA
* *
734682 TGCCAACGTGTTGATTCAAGGCCAACGACATTGGTCTTA
1 TGCCAACGTGCTGATTCAAGGCCAACGACATTGGGCTTA
734721 AAGGTGAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (39 bp):
TGCCAACGTGCTGATTCAAGGCCAACGACATTGGGCTTA
Found at i:734823 original size:186 final size:180
Alignment explanation
Indices: 734506--735380 Score: 928
Period size: 186 Copynumber: 4.7 Consensus size: 180
734496 CAATGTGCTA
* * * *
734506 ATTCAAGGCCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGC
1 ATTCAAGGCCAACGACATTGGACTTAAAGGTG---AAGGTGCCAATATGCTGATTCAAGGCCAGC
* *
734571 GATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTAGACTTAAAG
63 GATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----
*
734636 ATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGGCTTATGCCAACGTGTTG
124 A--AAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTATGCCAACGTGTTG
* *
734695 ATTCAAGGCCAACGACATTGGTCTTAAAGGTGAAGGTGCCAATATGCTGATTTAAGGCCAGCGAT
1 ATTCAAGGCCAACGACATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
*
734760 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
66 ATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--
*
734825 AAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGGCTTATGCCAACGTGTTG
125 AAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTATGCCAACGTGTTG
* *
734881 ATTCAAGGCCAACGACATTGGTCTTAAAGGTGAAGGTGCCAATATGTTGATTCAAGGCCAGCGAT
1 ATTCAAGGCCAACGACATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
* *
734946 ATTGGACTTAAAGATGACAAAGGCGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAG
66 ATTGGACTTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
* * ** *
735011 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTG
128 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT--------A--TGCCAACGTGTTG
* * * * *
735074 ATTCAAGGCCAGCGATATTGGACTT--A----AAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTCAAGGCCAACGACATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
735133 ATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTG
66 ATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTG
* * ** *
735198 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTG
131 CCAATGTGCTGATTCAAGGCCAACGACATTGGAC-T-----T--A--TGCCAACGTGTTG
* * * * * * * * *
735258 ATTAAAGGCCAGCTATATTAGACTT--A----AAGGTGCCAATGTGCTAATTCAAGGCTAGCGAC
1 ATTCAAGGCCAACGACATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
* ** *
735317 ATTGGTCTTAAAGAAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
66 ATTGGACTTAAAG-ATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
735381 AAGATGCCAC
Statistics
Matches: 629, Mismatches: 37, Indels: 44
0.89 0.05 0.06
Matches are distributed among these distances:
183 39 0.06
184 164 0.26
185 49 0.08
186 230 0.37
187 45 0.07
189 67 0.11
190 1 0.00
191 2 0.00
193 32 0.05
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (180 bp):
ATTCAAGGCCAACGACATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
ATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTG
CCAATGTGCTGATTCAAGGCCAACGACATTGGACTTATGCCAACGTGTTG
Found at i:734883 original size:39 final size:39
Alignment explanation
Indices: 734829--734906 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
734819 AAGATGAAGG
*
734829 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGCTTA
1 TGCCAACGTGCTGATTCAAGGCCAACGACATTGGGCTTA
* *
734868 TGCCAACGTGTTGATTCAAGGCCAACGACATTGGTCTTA
1 TGCCAACGTGCTGATTCAAGGCCAACGACATTGGGCTTA
734907 AAGGTGAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (39 bp):
TGCCAACGTGCTGATTCAAGGCCAACGACATTGGGCTTA
Found at i:735102 original size:92 final size:92
Alignment explanation
Indices: 734913--735380 Score: 738
Period size: 92 Copynumber: 5.0 Consensus size: 92
734903 CTTAAAGGTG
* * * * * *
734913 AAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--A-GAAGGTGCCAATAT
*
734978 GTTGATTCAAGGCCAGCGATATTGGACTTA
63 GCTGATTCAAGGCCAGCGATATTGGACTTA
735008 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCT
735073 GATTCAAGGCCAGCGATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
*
735100 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCT
735165 GATTCAAGGCCAGCGATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
*
735192 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCT
* * *
735257 GATTAAAGGCCAGCTATATTAGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* * * * *
735284 AAGGTGCCAATGTGCTAATTCAAGGCTAGCGACATTGGTCTTAAAGAAAAAAGGTGCCAATATGC
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-AAGAAGGTGCCAATATGC
*
735349 TGATTCAAGGCCAGCTATATTGGACTTA
65 TGATTCAAGGCCAGCGATATTGGACTTA
735377 AAGG
1 AAGG
735381 AAGATGCCAC
Statistics
Matches: 353, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
92 263 0.75
93 47 0.13
95 43 0.12
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTTA
Found at i:735358 original size:50 final size:50
Alignment explanation
Indices: 735283--735379 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 50
735273 TATTAGACTT
* * *
735283 AAAGGTGCCAATGTGCTAATTCAAGGCTAGCGACATTGGTCTTAAAGAAA
1 AAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAGAAA
* * *
735333 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 AAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAG
735380 GAAGATGCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (50 bp):
AAAGGTGCCAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAGAAA
Found at i:735602 original size:32 final size:32
Alignment explanation
Indices: 735385--735607 Score: 270
Period size: 32 Copynumber: 6.9 Consensus size: 32
735375 TAAAGGAAGA
* *
735385 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
1 TGCCACCAACTTGTGTGGGC-TTTGAGAAGGGT
* * *
735418 TGCCATCTACTTGTGTGGGCTTT-AGAGGGGAT
1 TGCCACCAACTTGTGTGGGCTTTGAGAAGGG-T
* * *
735450 TACCACCAACTTGTGTGGGCTTTAGAAAAAGGT
1 TGCCACCAACTTGTGTGGGCTTT-GAGAAGGGT
*
735483 TGCCACCAACTTGTGTGGGCTTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
* * *
735515 TGTCACCGACTTGTGTGGGCTTTG-GAGGGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAGA-AGGGT
735547 TGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
*
735579 TGCCACCGACTTGTGTGGGCTTTGGAGAA
1 TGCCACCAACTTGTGTGGGCTTT-GAGAA
735608 TGGTGAAAGA
Statistics
Matches: 163, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
31 5 0.03
32 106 0.65
33 48 0.29
34 4 0.02
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.30
Consensus pattern (32 bp):
TGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
Found at i:735605 original size:64 final size:64
Alignment explanation
Indices: 735385--735602 Score: 294
Period size: 65 Copynumber: 3.4 Consensus size: 64
735375 TAAAGGAAGA
* * *
735385 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGTTGCCATCTACTTGTGTGGGCTTT-AGAGGGGA
1 TGCCACCAACTTGTGTGGGC-TTTGAAAAAGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGG-
735449 T
64 T
* *
735450 TACCACCAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCAACTTGTGTGGGCTTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTT-GAAAAAGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
* * * ***
735515 TGTCACCGACTTGTGTGGGCTTTGGAGGGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAAAAGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
*
735579 TGCCACCGACTTGTGTGGGCTTTG
1 TGCCACCAACTTGTGTGGGCTTTG
735603 GAGAATGGTG
Statistics
Matches: 137, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
64 62 0.45
65 70 0.51
66 5 0.04
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (64 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAAAGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
Found at i:735655 original size:33 final size:33
Alignment explanation
Indices: 735613--736163 Score: 409
Period size: 33 Copynumber: 16.8 Consensus size: 33
735603 GAGAATGGTG
* * *
735613 AAAGATGCCACGAAGTTGTGGACTCAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
735646 CAAGGTGCCACGAAGTTGTGGACTTTAAATGGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAA-AGGAA
* * * **
735681 AAAGAGTGCCATGAAGTTGTGGGCTTTGAA--AA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
735713 GAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
735746 AAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAA-GGAA
* * **
735781 AAAGAGTGCCACGGAGTTATGGGCTTTGAA--AA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* * **
735813 GAAGGTGCCATGGAGTCATGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
735846 CAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAA-GGAA
* * *
735881 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA-CAG
1 AAAG-GTGCCACGGAGTTGTGGAC-TT-AAAAGGAA
** *
735916 GGAGGTGCCACGGAGTCGTGGACTTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* *
735950 AAAGATGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
735983 CAAGGTGCCACGGAGTTGTGGACTTTAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
736016 AAAGGGTGCCACGGAGTCGTGGACTT------AA
1 AAA-GGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * **
736044 AATGGTGCCACGAAGTTGTGGGCTT-TCA--AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
736074 AGA-GTGCCACGGAGTTGTGGACTTTGAAAA-GAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGGAA
* **
736107 AAAGGGTGCCACGGAGTCGTGGACTTTGAA-G-A
1 AAA-GGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
736139 AAAGATGCCACTGAGTCGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
736164 TGGAAAGAGA
Statistics
Matches: 419, Mismatches: 74, Indels: 52
0.77 0.14 0.10
Matches are distributed among these distances:
27 19 0.05
28 4 0.01
29 17 0.04
30 5 0.01
31 59 0.14
32 15 0.04
33 115 0.27
34 78 0.19
35 50 0.12
36 53 0.13
37 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:735723 original size:67 final size:64
Alignment explanation
Indices: 735613--736194 Score: 396
Period size: 67 Copynumber: 8.9 Consensus size: 64
735603 GAGAATGGTG
* * *
735613 AAAGA-TGCCACGAAGTTGTGGAC-TCAAAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAAT
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-G---AAGGTGCCACGGAGTTGTGGACTTTAAA-
735676 GGGAA
61 -GGAA
* * * * *
735681 AAAGAGTGCCATGAAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTT-AAAAGAAGGTGCCACGGAGTTGTGGACTTTAAAGGAA
* * * *
735746 AAAG-GTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTATGGGCTTTGA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA--G---AAG-GTGCCACGGAGTTGTGGACTTTAA
735810 A--AA
60 AGGAA
* * ** *
735813 GAAG-GTGCCATGGAGTCATGGAC-TTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-G---AAGGTGCCACGGAGTTGTGGACTTT-AAA
735876 GGGAA
61 -GGAA
* * *
735881 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAACAGGGAGGTGCCACGGAGTCGTGGACTTTAAAA
1 AAAGAGTGCCACGGAGTTGTGGACTTT--AAA-A-GAAGGTGCCACGGAGTTGTGGACTTT-AAA
735946 GGAA
61 GGAA
*
735950 AAAGA-TGCCACAGAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAG
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-G---AAGGTGCCACGGAGTTGTGGACTTTAAAG
736013 GAA
62 GAA
* * * * * *
736016 AAAGGGTGCCACGGAGTCGTGGAC-TT-AAA-ATGGTGCCACGAAGTTGTGGGCTTT-----CA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAGGTGCCACGGAGTTGTGGACTTTAAAGGAA
* *
736072 AAAGAGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGGGTGCCACGGAGTCGTGGACTTTGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTT-AAAAG---AA-GGTGCCACGGAGTTGTGGACTTTAAA
736137 -G-A
61 GGAA
* * * * * *
736139 AAAGA-TGCCACTGAGTCGTGGACTTTGGAAAG-AGATGCCACTGAATTGTGGACTTT
1 AAAGAGTGCCACGGAGTTGTGGACTTT-AAAAGAAGGTGCCACGGAGTTGTGGACTTT
736195 GAGACAAGAT
Statistics
Matches: 423, Mismatches: 57, Indels: 75
0.76 0.10 0.14
Matches are distributed among these distances:
56 23 0.05
57 2 0.00
59 3 0.01
61 41 0.10
62 1 0.00
63 5 0.01
64 60 0.14
65 21 0.05
66 44 0.10
67 94 0.22
68 29 0.07
69 60 0.14
70 30 0.07
71 4 0.01
72 3 0.01
73 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (64 bp):
AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAGGTGCCACGGAGTTGTGGACTTTAAAGGAA
Found at i:735734 original size:100 final size:100
Alignment explanation
Indices: 735618--736132 Score: 578
Period size: 100 Copynumber: 5.2 Consensus size: 100
735608 TGGTGAAAGA
* * * * *
735618 TGCCACGAAGTTGTGGACTCAAAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAATGGGAAAA
1 TGCCACGGAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAA
* *
735683 AGAGTGCCATGAAGTTGTGGGCTTTGAAAAGAAGG
66 AGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGG
**
735718 TGCCACGGAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAA
1 TGCCACGGAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAA
*
735783 AGAGTGCCACGGAGTTATGGGCTTTGAAAAGAAGG
66 AGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGG
* * * **
735818 TGCCATGGAGTCATGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAA
1 TGCCACGGAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAA
*
735883 AGAGTGCCACGGAGTTGTGGGCTTTGAAAACAGGGAGG
66 AGAGTGCCACGGAGTTGTGGGCTTTG-AAA-A-GAAGG
*
735921 TGCCACGGAGTCGTGGACTTTAAAAGGAAAAAGATGCCAC-AGAGTTGTGGAC-TTAAAA-GGAA
1 TGCCACGGAGTCGTGGAC-TTAAAAGGAAAAAGGTGCCACGA-AGTTGTGGACTTTAAAAGGGAA
* * * *
735983 CAAG-GTGCCACGGAGTTGTGGACTTTAAAGGAAAAAGGG
64 AAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AAGAA-GG
* * *
736022 TGCCACGGAGTCGTGGACTT------AAAATGGTGCCACGAAGTTGTGGGCTTT-------CAAA
1 TGCCACGGAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAA
*
736074 AGAGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGGG
66 AGAGTGCCACGGAGTTGTGGGCTTTGAAAAG---AA-GG
736113 TGCCACGGAGTCGTGGACTT
1 TGCCACGGAGTCGTGGACTT
736133 TGAAGAAAAG
Statistics
Matches: 368, Mismatches: 33, Indels: 37
0.84 0.08 0.08
Matches are distributed among these distances:
88 2 0.01
89 4 0.01
90 24 0.07
91 25 0.07
94 20 0.05
95 3 0.01
100 182 0.49
101 45 0.12
102 9 0.02
103 26 0.07
104 28 0.08
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.20
Consensus pattern (100 bp):
TGCCACGGAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAA
AGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGG
Found at i:736053 original size:27 final size:27
Alignment explanation
Indices: 736015--736097 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
736005 CTTTAAAGGA
*
736015 AAAAGGGTGCCACGGAGTCGTGGACTT-
1 AAAA-GGTGCCACGGAGTTGTGGACTTC
* *
736042 AAAATGGTGCCACGAAGTTGTGGGCTTTC
1 AAAA-GGTGCCACGGAGTTGTGGAC-TTC
736071 AAAAGAGTGCCACGGAGTTGTGGACTT
1 AAAAG-GTGCCACGGAGTTGTGGACTT
736098 TGAAAAGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
27 21 0.45
28 5 0.11
29 21 0.45
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.23
Consensus pattern (27 bp):
AAAAGGTGCCACGGAGTTGTGGACTTC
Found at i:736117 original size:35 final size:34
Alignment explanation
Indices: 736071--736171 Score: 127
Period size: 35 Copynumber: 3.0 Consensus size: 34
736061 GTGGGCTTTC
* *
736071 AAAAGAGTGCCACGGAGTTGTGGACTTTGAAAAGA
1 AAAAGGGTGCCACGGAGTCGTGGACTTTG-AAAGA
736106 AAAAGGGTGCCACGGAGTCGTGGACTTTG-AAG-
1 AAAAGGGTGCCACGGAGTCGTGGACTTTGAAAGA
* *
736138 AAAA-GATGCCACTGAGTCGTGGACTTTGGAAAGA
1 AAAAGGGTGCCACGGAGTCGTGGACTTT-GAAAGA
736172 GATGCCACTG
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
31 21 0.36
32 5 0.08
33 6 0.10
35 27 0.46
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.20
Consensus pattern (34 bp):
AAAAGGGTGCCACGGAGTCGTGGACTTTGAAAGA
Found at i:736177 original size:30 final size:30
Alignment explanation
Indices: 736071--736229 Score: 158
Period size: 30 Copynumber: 5.1 Consensus size: 30
736061 GTGGGCTTTC
* *
736071 AAAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG---AG
* *
736105 AAAAAGGGTGCCACGGAGTCGTGGACTTTGAAG
1 -AAAA-GATGCCACTGAGTCGTGGACTTTG-AG
736138 AAAAGATGCCACTGAGTCGTGGACTTTG-G
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* *
736167 AAAGAGATGCCACTGAATTGTGGACTTTGAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTGAG
* * *
736198 ACAAGATGCCACTAAGTCGTGGACTTTAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
736228 AA
1 AA
736230 GGTATTTGAA
Statistics
Matches: 109, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
29 4 0.04
30 47 0.43
31 25 0.23
32 4 0.04
33 3 0.03
35 25 0.23
36 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (30 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAG
Found at i:736208 original size:91 final size:90
Alignment explanation
Indices: 735881--736229 Score: 307
Period size: 91 Copynumber: 3.7 Consensus size: 90
735871 TAAAAGGGAA
* *
735881 AAAGAGTGCCACGGAGTTGTGGGCTTTGA-AAACAGGGAGGTGCCACGGAGTCGTGGACTTTAAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTGAGAAA-A-AG-GGTGCCACGGAGTCGTGGACTTT--A
*
735945 AGGAAAAAGATGCCACAGAGTTGTGGACTTAAAAGG
61 A-G-AAAAGATGCCAC-GAGTTGTGGACTT---TGG
*
735981 AACA-AGGTGCCACGGAGTTGTGGACTTTAAAGGAAAAAGGGTGCCACGGAGTCGTGGAC-TT-A
1 AA-AGA-GTGCCACGGAGTTGTGGACTTT-GA-GAAAAAGGGTGCCACGGAGTCGTGGACTTTAA
* * * **
736043 -AAATGGTGCCACGAAGTTGTGGGCTTTCA
62 GAAAAGATGCCACG-AGTTGTGGACTTTGG
736072 AAAGAGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGGGTGCCACGGAGTCGTGGACTTTGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTG---AGAAAAAGGGTGCCACGGAGTCGTGGACTTT-AA
*
736137 GAAAAGATGCCACTGAGTCGTGGACTTTGG
62 GAAAAGATGCCAC-GAGTTGTGGACTTTGG
* * * * **
736167 AAAGAGATGCCACTGAATTGTGGACTTTGAG-ACAA-GATGCCACTAAGTCGTGGACTTTAAGAA
1 AAAGAG-TGCCACGGAGTTGTGGACTTTGAGAAAAAGGGTGCCACGGAGTCGTGGACTTTAAGAA
736230 GGTATTTGAA
Statistics
Matches: 211, Mismatches: 22, Indels: 42
0.77 0.08 0.15
Matches are distributed among these distances:
90 28 0.13
91 50 0.24
92 6 0.03
93 3 0.01
94 22 0.10
95 27 0.13
96 21 0.10
97 1 0.00
100 5 0.02
101 42 0.20
102 2 0.01
103 1 0.00
104 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (90 bp):
AAAGAGTGCCACGGAGTTGTGGACTTTGAGAAAAAGGGTGCCACGGAGTCGTGGACTTTAAGAAA
AGATGCCACGAGTTGTGGACTTTGG
Found at i:736360 original size:16 final size:17
Alignment explanation
Indices: 736329--736366 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
736319 GATGTAAATA
* *
736329 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
736346 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
736362 ATGAT
1 ATGAT
736367 TACAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:737197 original size:18 final size:17
Alignment explanation
Indices: 737174--737207 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
737164 GTGAAAAGGG
737174 GTTTTCCTCTTTTTTTTT
1 GTTTTCCT-TTTTTTTTT
737192 GTTTTCCTTTTTTTTT
1 GTTTTCCTTTTTTTTT
737208 GTGTGTTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.00, C:0.15, G:0.06, T:0.79
Consensus pattern (17 bp):
GTTTTCCTTTTTTTTTT
Found at i:737676 original size:13 final size:13
Alignment explanation
Indices: 737658--737682 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
737648 CACAAAATGT
737658 TGTATCGATACAA
1 TGTATCGATACAA
737671 TGTATCGATACA
1 TGTATCGATACA
737683 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:737766 original size:13 final size:13
Alignment explanation
Indices: 737748--737772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
737738 ATTACTCACA
737748 TGTATCGATACAT
1 TGTATCGATACAT
737761 TGTATCGATACA
1 TGTATCGATACA
737773 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:737909 original size:52 final size:52
Alignment explanation
Indices: 737781--737901 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
737771 CACTGATCTT
*
737781 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
737833 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
737885 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
737902 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:740887 original size:16 final size:18
Alignment explanation
Indices: 740852--740889 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
740842 GCCTTTGTAC
740852 TTTTCTTTTGTGTGTTGT
1 TTTTCTTTTGTGTGTTGT
*
740870 TTTTGTTTTGT-T-TTGT
1 TTTTCTTTTGTGTGTTGT
740886 TTTT
1 TTTT
740890 TGTGTTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.00, C:0.03, G:0.18, T:0.79
Consensus pattern (18 bp):
TTTTCTTTTGTGTGTTGT
Found at i:747888 original size:52 final size:52
Alignment explanation
Indices: 747740--747868 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
747730 CGAAATATGA
747740 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * * * *
747792 AAATTTGTCTGTATGTATTGTTACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
747844 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
747869 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:747895 original size:13 final size:13
Alignment explanation
Indices: 747877--747901 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
747867 CAAAGATCAG
747877 TGTATCGATACAA
1 TGTATCGATACAA
747890 TGTATCGATACA
1 TGTATCGATACA
747902 TTAGGGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:747965 original size:13 final size:13
Alignment explanation
Indices: 747947--747997 Score: 57
Period size: 13 Copynumber: 3.5 Consensus size: 13
747937 GCTTCAGTAG
747947 CGATACATTGTAT
1 CGATACATTGTAT
747960 CGATACAAACTTATGTAT
1 CGATAC--A--T-TGTAT
747978 CGATACATTGTAT
1 CGATACATTGTAT
747991 CGATACA
1 CGATACA
747998 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
13 18 0.55
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 11 0.33
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:747982 original size:31 final size:32
Alignment explanation
Indices: 747947--748016 Score: 133
Period size: 31 Copynumber: 2.2 Consensus size: 32
747937 GCTTCAGTAG
747947 CGATACATTGTATCGATACAA-ACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
747978 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
748010 CGATACA
1 CGATACA
748017 ACATTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.55
32 17 0.45
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.33
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:748010 original size:19 final size:19
Alignment explanation
Indices: 747955--748036 Score: 97
Period size: 19 Copynumber: 4.7 Consensus size: 19
747945 AGCGATACAT
747955 TGTATCGATACAA-ACTTA
1 TGTATCGATACAACACTTA
747973 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
747986 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
* *
748005 TGTATCGATACAACATTTT
1 TGTATCGATACAACACTTA
748024 TGTATCGATACAA
1 TGTATCGATACAA
748037 ATCGTTGAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 13
0.79 0.03 0.19
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
15 1 0.02
16 4 0.07
18 10 0.18
19 30 0.55
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:755067 original size:9 final size:9
Alignment explanation
Indices: 755045--755095 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
755035 CTTTTATACC
*
755045 AAAAAAATA
1 AAAAAAACA
755054 GAAAAAAAC-
1 -AAAAAAACA
755063 -AAAAAA-A
1 AAAAAAACA
*
755070 AAAACAACA
1 AAAAAAACA
755079 AAAAAAACA
1 AAAAAAACA
755088 AAAAAAAC
1 AAAAAAAC
755096 CAAGAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
7 6 0.17
8 5 0.14
9 17 0.49
10 7 0.20
ACGTcount: A:0.86, C:0.10, G:0.02, T:0.02
Consensus pattern (9 bp):
AAAAAAACA
Found at i:755070 original size:12 final size:12
Alignment explanation
Indices: 755055--755094 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
755045 AAAAAAATAG
755055 AAAAAAACAAAA
1 AAAAAAACAAAA
*
755067 AAAAAAACAACA
1 AAAAAAACAAAA
755079 AAAAAAACAAAA
1 AAAAAAACAAAA
755091 AAAA
1 AAAA
755095 CCAAGAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAACAAAA
Found at i:755094 original size:33 final size:33
Alignment explanation
Indices: 755045--755125 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
755035 CTTTTATACC
*
755045 AAAAAAATAGAAAAAAACAAAAAAAAAAACAACA
1 AAAAAAACA-AAAAAAACAAAAAAAAAAACAACA
* * * * *
755079 AAAAAAACAAAAAAAACCAAGAAATAAATAGCA
1 AAAAAAACAAAAAAAACAAAAAAAAAAACAACA
*
755112 AAAAAAACAGAAAA
1 AAAAAAACAAAAAA
755126 GGGTCCAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 32 0.80
34 8 0.20
ACGTcount: A:0.81, C:0.10, G:0.05, T:0.04
Consensus pattern (33 bp):
AAAAAAACAAAAAAAACAAAAAAAAAAACAACA
Found at i:756384 original size:28 final size:28
Alignment explanation
Indices: 756341--757361 Score: 1229
Period size: 28 Copynumber: 35.9 Consensus size: 28
756331 CGTTCATCTC
* *
756341 TTCAAAGCTCGCAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
756369 TTTAAAGCCCATAAGTCAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
*
756398 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
756426 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
756454 TTCAAAGCTCACAAGTCAGTGGCACTTTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
756483 TTCAAAGTCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
756511 TTCAAAGCCCATAAGTCAGTGTCATCCA
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
756539 TTCAAAGCCCACAAGTTATTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
756567 TTCAAAGCCCACAAGTCAATGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
756596 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
756624 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
756652 TTCAAAGCCCACAAGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
756680 TTCAAAGCCCACAAGTCAATAGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
756708 TTCAAAGCCTACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
756736 TTCAAGGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
756764 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
756792 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
756820 TTTAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
756848 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
756876 TTCAAAGCCCACATGTCAGTGGTACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
756905 TTCAAAGACCACAAGTCAGTGACACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
756933 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
756961 TTCGAAGCCTACAAGTCAGTGGCACTCCT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
756990 TTCAAAGCCCACGAGTTAGTGGCA-TCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
757017 TTCAAAGCCCACAAGTCAATGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
757046 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
757074 TTCAAAGCCCACAAGTGAGTGACACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
757102 TGTCAAAGCCCACAAGTCAGTGG-ACCCT
1 T-TCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
757130 TTTAAAGCCCATAAGTTACTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
757158 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
757186 TTGAAAGCCCACGCAAGTCAGTGGTACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
* *
757216 TTCAAAGCCCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
757245 TTCAAAGCCTACAAATCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
757273 TTCAAAGCCCACAAG-CTAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTC-AGTGG-CAC-CCT
*
757303 TTCAAAGCCCACATGAGTCAGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
*
757335 TTCAAAGGCCACACAAGTTAGTGGCAC
1 TTCAAA-GCC-CACAAGTCAGTGGCAC
757362 TTTTTTTAAA
Statistics
Matches: 856, Mismatches: 116, Indels: 39
0.85 0.11 0.04
Matches are distributed among these distances:
27 41 0.05
28 551 0.64
29 186 0.22
30 40 0.05
31 2 0.00
32 28 0.03
33 4 0.00
34 4 0.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:756543 original size:113 final size:113
Alignment explanation
Indices: 756341--757360 Score: 1259
Period size: 113 Copynumber: 9.0 Consensus size: 113
756331 CGTTCATCTC
* * * * *
756341 TTCAAAGCTCGCAAGTCAGTGGCACCCTTTT-AAAGCCCATAAGTCAGTGGCATTCTTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAG
*
756405 CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCT
65 CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
756454 TTCAAAGCTCACAAGTCAGTGGCACTTTTTTCAAAGTCCACAAGTCAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * * * *
756519 CCATAAGTCAGTGTCATCCATTCAAAGCCCACAAGTTATTGGCATCCT
66 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
*
756567 TTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
*
756632 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCAT
66 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * * *
756680 TTCAAAGCCCACAAGTCAATAGCAC-CCTTTCAAAGCCTACAAGTCAGTGGCATCCTTTCAAGGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
756744 CCACAAGTTAGTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACCCT
66 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
756792 TTCAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
756856 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACATGTCAGTGGTACTCTT
66 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-TCCT
* * * * * *
756905 TTCAAAGACCACAAGTCAGTGACAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCGAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * *
756969 CTACAAGTCAGTGGCACTCCTTTCAAAGCCCACGAGTTAGTGGCAT-CT
66 CCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
757017 TTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * *
757082 CCACAAGTGAGTGACA-CTCTTGTCAAAGCCCACAAGTCAGTGG-ACCCT
66 CCACAAGTCAGTGGCATC-CTT-TCAAAGCCCACAAGTCAGTGGCATCCT
* * * * * *
757130 TTTAAAGCCCATAAGTTACTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTGAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
757194 CCACGCAAGTCAGTGGTACCCTTTCAAAGCCCATAAGTCAGTGGCACTCTT
66 CCA--CAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-TCCT
* * * * *
757245 TTCAAAGCCTACAAATCAGTGGCAC-CCTTTCAAAGCCCACAAG-CTAGTGGTAACTCTTTTCAA
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTC-AGTGG-CA-TCCTTTCAA
* *
757308 AGCCCACATGAGTCAGTGGCAACTCTTTTCAAAGGCCACACAAGTTAGTGGCA
63 AGCCCACA--AGTCAGTGGC-A-TCCTTTCAAA-GCC-CACAAGTCAGTGGCA
757361 CTTTTTTTAA
Statistics
Matches: 791, Mismatches: 92, Indels: 40
0.86 0.10 0.04
Matches are distributed among these distances:
111 1 0.00
112 243 0.31
113 396 0.50
114 57 0.07
115 46 0.06
116 1 0.00
117 22 0.03
118 1 0.00
119 8 0.01
120 3 0.00
121 13 0.02
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (113 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:758267 original size:20 final size:20
Alignment explanation
Indices: 758238--758358 Score: 89
Period size: 20 Copynumber: 5.5 Consensus size: 20
758228 TACCCAGATA
758238 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
* * * *
758258 TATTGATACATGTATGAATG
1 TATCGATACATTTTTCAATG
* *
758278 TATCAATACATTCTTCAATG
1 TATCGATACATTTTTCAATG
*
758298 TATCGATACTTCTGTCTTTTTACCCAGATG
1 TATCGATA---C---ATTTTT---CA-ATG
758328 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
758348 TATCGATACAT
1 TATCGATACAT
758359 CTAGTTAAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
20 51 0.66
21 2 0.03
23 1 0.01
24 5 0.06
26 4 0.05
27 1 0.01
29 2 0.03
30 11 0.14
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.42
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:762313 original size:90 final size:90
Alignment explanation
Indices: 762140--762315 Score: 221
Period size: 90 Copynumber: 2.0 Consensus size: 90
762130 CAATAACTTG
* * *
762140 GCAAATGCCTATGAAATGATGCAAATACCAATGTCATCTAAAATGCAAATGTAGGTGAAACGATG
1 GCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAAATACAAATGTAGGTGAAACGACG
*
762205 CAAATGTAAGGATCAATAAAAAAAA
66 CAAATGTAAGCATCAATAAAAAAAA
* * * *
762230 GCAAATGCATATGAAATGATGCAAATGCGAATGTTATC-AAAACTACAAATGT-GTGTGAAATGA
1 GCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAAA-TACAAATGTAG-GTGAAACGA
* * *
762293 CGCAACTGTGAGCATTAATAAAA
64 CGCAAATGTAAGCATCAATAAAA
762316 GGGCAAATGC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
89 5 0.07
90 68 0.93
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (90 bp):
GCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAAATACAAATGTAGGTGAAACGACG
CAAATGTAAGCATCAATAAAAAAAA
Found at i:763230 original size:154 final size:156
Alignment explanation
Indices: 763045--763523 Score: 560
Period size: 154 Copynumber: 3.0 Consensus size: 156
763035 CTTTCATGTG
* *
763045 TTTTTCATTTTTTTCCTTGACACTCTCTTATTTCTAAAATATAGAGTTTTCTAGTCTATAAATGT
1 TTTTTCATTTTTTT-CTTGAAACTCTCTTATTTCTAAAATATAGAGTTTTCTACTCTATAAATGT
* *
763110 TTTCAAGGGGATTTTTCTTGGTTTTTAACTTTTCAAATTCATCAAATATTATTATTTAATTCATA
65 TTTCAAGGGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCATA
* *
763175 TTAAATCAGTTTTCAAATGTTCATTCA
130 TTAAATCAATTTTCAAATATTCATTCA
* *
763202 TTTTT-A-TTTTTTCTTGAAACTCTTTTATTT-TCAAAATATAGAGTTTTCTACTCTATAAAGGT
1 TTTTTCATTTTTTTCTTGAAACTCTCTTATTTCT-AAAATATAGAGTTTTCTACTCTATAAATGT
* *
763264 TTT--GGGGACGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCGAATATTATTATTTAATTCA
65 TTTCAAGGG--GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCA
*
763327 TATTAAATCATTTTTCAAAAATTCATTCATTTTCATTCA
128 TATTAAATCAATTTTC---AA---A-T-A--TTCATTCA
* * * * * *
763366 TTTTTCATTTTTTTCTTGAAATTCTCCTGTTTCCAAAATACAGAGTTTTCTACTCTGTAAATGTT
1 TTTTTCATTTTTTTCTTGAAACTCTCTTATTTCTAAAATATAGAGTTTTCTACTCTATAAATGTT
* * * *
763431 TCCGAA-GGGATGTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTAA-T-ACA
66 TTC-AAGGGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCATA
* *
763493 TTAAATCAATTTTCAAAAATTCATTTA
130 TTAAATCAATTTTCAAATATTCATTCA
763520 TTTT
1 TTTT
763524 CATGAGATTT
Statistics
Matches: 276, Mismatches: 27, Indels: 41
0.80 0.08 0.12
Matches are distributed among these distances:
152 3 0.01
153 1 0.00
154 124 0.45
155 6 0.02
156 2 0.01
157 7 0.03
158 1 0.00
160 1 0.00
161 3 0.01
164 28 0.10
165 2 0.01
166 96 0.35
168 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (156 bp):
TTTTTCATTTTTTTCTTGAAACTCTCTTATTTCTAAAATATAGAGTTTTCTACTCTATAAATGTT
TTCAAGGGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCATAT
TAAATCAATTTTCAAATATTCATTCA
Found at i:763525 original size:164 final size:163
Alignment explanation
Indices: 762907--763526 Score: 642
Period size: 166 Copynumber: 3.8 Consensus size: 163
762897 GAATTTTTTT
* * * * * *
762907 TATTTCCAAAATAC-GAAATTTTTTACTCCATAAATGTTTTTG-GGAGATTTTTCTTGGTTTTTA
1 TATTTCCAAAATACAG-AGTTTTCTACTCTATAAA-GGTTTCGAGGAGATGTTTCTTGGTTTTTA
* * *
762970 ATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTCAAAAATTCATTCA
64 ATTTTTAAAATTCATAAAATATTATTATTTAATTCACATTAAATCAATTTTCAAAAATTCATTCA
* * * *
763035 CTTTCATGT-GTTTTTCATTTTTTTCCTTGACACTCTCT
129 TTTTCAT-TCATTTTT-A-TTTTTT-CTTGAAACTCTCC
* * * * * * *
763073 TATTTCTAAAATATAGAGTTTTCTAGTCTATAAATGTTTTCAAGGGGATTTTTCTTGGTTTTTAA
1 TATTTCCAAAATACAGAGTTTTCTACTCTATAAA-GGTTTCGAGGAGATGTTTCTTGGTTTTTAA
* * * * *
763138 CTTTTCAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTC----A---A---AT
65 TTTTTAAAATTCATAAAATATTATTATTTAATTCACATTAAATCAATTTTCAAAAATTCATTCAT
* **
763193 GTTCATTCATTTTTATTTTTTCTTGAAACTCTTT
130 TTTCATTCATTTTTATTTTTTCTTGAAACTCTCC
* * * * *
763227 TATTTTCAAAATATAGAGTTTTCTACTCTATAAAGGTTTTGGGGACGATTTTTCTTGGTTTTTAA
1 TATTTCCAAAATACAGAGTTTTCTACTCTATAAAGGTTTCGAGGA-GATGTTTCTTGGTTTTTAA
** * *
763292 TTTTTAAAATTCATCGAATATTATTATTTAATTCATATTAAATCATTTTTCAAAAATTCATTCAT
65 TTTTTAAAATTCATAAAATATTATTATTTAATTCACATTAAATCAATTTTCAAAAATTCATTCAT
*
763357 TTTCATTCATTTTTCATTTTTTTCTTGAAATTCTCC
130 TTTCATTCATTTTT-A-TTTTTTCTTGAAACTCTCC
* * *
763393 TGTTTCCAAAATACAGAGTTTTCTACTCTGTAAATGTTTCCGAAGG-GATGTTTCTTGGTTTTTA
1 TATTTCCAAAATACAGAGTTTTCTACTCTATAAAGGTTT-CG-AGGAGATGTTTCTTGGTTTTTA
*
763457 ATTTTTAAAATTCATAAAATATTATTATTTAA-T-ACATTAAATCAATTTTCAAAAATTCATTTA
64 ATTTTTAAAATTCATAAAATATTATTATTTAATTCACATTAAATCAATTTTCAAAAATTCATTCA
763520 TTTTCAT
129 TTTTCAT
763527 GAGATTTGAA
Statistics
Matches: 391, Mismatches: 45, Indels: 38
0.82 0.09 0.08
Matches are distributed among these distances:
153 6 0.02
154 108 0.28
155 6 0.02
156 2 0.01
157 11 0.03
158 1 0.00
160 1 0.00
161 1 0.00
163 1 0.00
164 49 0.13
165 2 0.01
166 129 0.33
167 72 0.18
168 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.50
Consensus pattern (163 bp):
TATTTCCAAAATACAGAGTTTTCTACTCTATAAAGGTTTCGAGGAGATGTTTCTTGGTTTTTAAT
TTTTAAAATTCATAAAATATTATTATTTAATTCACATTAAATCAATTTTCAAAAATTCATTCATT
TTCATTCATTTTTATTTTTTCTTGAAACTCTCC
Found at i:763593 original size:164 final size:163
Alignment explanation
Indices: 763207--763708 Score: 487
Period size: 166 Copynumber: 3.0 Consensus size: 163
763197 ATTCATTTTT
* ** * * * * * ** **
763207 ATTTTTTCTTGAAACTCTTTTATTTTCAAAATATAGAGTTTTCTACTCTATAAAGGTTTTGGGGA
1 ATTTTTTCTTGAAATTCTCCTGTTTCCAAAATACAGAATTTTCTACTCTATAAATGTTTCCGAAA
* * *
763272 CGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCGAATATTATTATTTAATTCATATTAAATCA
66 GGA-TTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCAAATTAAATCA
* * * *
763337 TTTTTCAAAAATTCATTCATTTTCATTCATTTTTCA
130 TTTTTCAAAAATTCATTTATTTTCA-TGA-ATTTGA
* * * *
763373 TTTTTTTCTTGAAATTCTCCTGTTTCCAAAATACAGAGTTTTCTACTCTGTAAATGTTTCCGAAG
1 ATTTTTTCTTGAAATTCTCCTGTTTCCAAAATACAGAATTTTCTACTCTATAAATGTTTCCGAAA
* *
763438 GGATGTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTAA-T-ACATTAAATCA
66 GGAT-TTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCAAATTAAATCA
*
763501 ATTTTCAAAAATTCATTTATTTTCATGAGATTTGA
130 TTTTTCAAAAATTCATTTATTTTCATGA-ATTTGA
* * * *
763536 ATTTTTTCTTTGAAATTTTCCT-TTTACCGAAAA-ACTGAATTTTCTATTAC-ATAAATGTTTTC
1 ATTTTTTC-TTGAAATTCTCCTGTTT-CC-AAAATACAGAATTTTCTACT-CTATAAATGTTTCC
* * * * * *
763598 GAAAGGATTTTCCTCGG-TTTAAATTTTTTAAAATTCATCTAATATTGTCATTAAATTCAAATTA
62 GAAAGGATTTT-CTTGGTTTTTAA-TTTTTAAAATTCATCAAATATTATTATTTAATTCAAATTA
* * *
763662 AATCATTTTTGAAAAATTCAAATTA-TTGCATGAATTTTGA
125 AATCATTTTTCAAAAATTC-ATTTATTTTCATGAA-TTTGA
763702 ATTTTTT
1 ATTTTTT
763709 TGTAAATATT
Statistics
Matches: 281, Mismatches: 44, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
163 24 0.09
164 106 0.38
165 9 0.03
166 138 0.49
167 4 0.01
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (163 bp):
ATTTTTTCTTGAAATTCTCCTGTTTCCAAAATACAGAATTTTCTACTCTATAAATGTTTCCGAAA
GGATTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCAAATTAAATCAT
TTTTCAAAAATTCATTTATTTTCATGAATTTGA
Found at i:764047 original size:14 final size:12
Alignment explanation
Indices: 764028--764057 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
764018 GCAAGTGAGG
764028 AAAAAAAGAGAGA
1 AAAAAAAG-GAGA
764041 AAAAAAAGGAGA
1 AAAAAAAGGAGA
764053 AAAAA
1 AAAAA
764058 GAGAAATCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
AAAAAAAGGAGA
Found at i:765136 original size:31 final size:35
Alignment explanation
Indices: 765101--765171 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
765091 ATTGAATATC
765101 ATTTTATTTT-TT-AAT-AAAAATCATTAT-CTAA
1 ATTTTATTTTATTAAATAAAAAATCATTATCCTAA
*
765132 ATTTTATTTTATTAAATAAAAAATTATTATCCTAA
1 ATTTTATTTTATTAAATAAAAAATCATTATCCTAA
*
765167 TTTTT
1 ATTTT
765172 TGAAATTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 10 0.29
32 2 0.06
33 3 0.09
34 11 0.32
35 8 0.24
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (35 bp):
ATTTTATTTTATTAAATAAAAAATCATTATCCTAA
Found at i:769559 original size:19 final size:19
Alignment explanation
Indices: 769515--769570 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
769505 CTGCCAGTTT
**
769515 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
769535 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
769554 CATGTATCGATATAATG
1 CATGTATCGATACAATG
769571 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:770200 original size:20 final size:20
Alignment explanation
Indices: 770156--770213 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
770146 ATTTCAACGA
***
770156 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATATTTT
*
770176 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
770196 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
770214 AAGCTACTAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:770329 original size:52 final size:51
Alignment explanation
Indices: 770265--770413 Score: 226
Period size: 52 Copynumber: 2.9 Consensus size: 51
770255 ATTGATCCAT
**
770265 TGTATCGATACATTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATT-ATCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
770317 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATTAT-CAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
770369 TGTATCAATACACTATTCAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATTA-TCAATGTATCGATACATGCAGGCAAATTT
770414 TCATATTTTG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 86 0.97
53 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Consensus pattern (51 bp):
TGTATCGATACATTATCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:784232 original size:1 final size:1
Alignment explanation
Indices: 784221--784300 Score: 79
Period size: 1 Copynumber: 80.0 Consensus size: 1
784211 CCTCCACAAC
* * * * * * *
784221 AAAACAAAAAAAAACAAAAAAAAACAAAAAAAAAACAAAAAAAAACAAAAAAAACAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
784286 AACAACAAAAAAAAA
1 AAAAAAAAAAAAAAA
784301 CAACAACAAT
Statistics
Matches: 61, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:784236 original size:10 final size:10
Alignment explanation
Indices: 784221--784306 Score: 122
Period size: 10 Copynumber: 8.7 Consensus size: 10
784211 CCTCCACAAC
784221 AAAACAAAAA
1 AAAACAAAAA
784231 AAAACAAAAA
1 AAAACAAAAA
784241 AAAACAAAAAA
1 AAAAC-AAAAA
784252 AAAACAAAAA
1 AAAACAAAAA
784262 AAAAC-AAAA
1 AAAACAAAAA
784271 AAAACAAAAA
1 AAAACAAAAA
*
784281 AAAACAACAA
1 AAAACAAAAA
*
784291 CAAA-AAAAA
1 AAAACAAAAA
*
784300 ACAACAA
1 AAAACAA
784307 CAATAACAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
9 15 0.22
10 43 0.63
11 10 0.15
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAACAAAAA
Found at i:784243 original size:19 final size:19
Alignment explanation
Indices: 784221--784306 Score: 111
Period size: 19 Copynumber: 4.4 Consensus size: 19
784211 CCTCCACAAC
784221 AAAACAAAAAAAAACAAAAA
1 AAAAC-AAAAAAAACAAAAA
784241 AAAACAAAAAAAAAACAAAAA
1 AAAAC--AAAAAAAACAAAAA
784262 AAAACAAAAAAAACAAAAA
1 AAAACAAAAAAAACAAAAA
*
784281 AAAACAACAACAAA-AAAAA
1 AAAACAA-AAAAAACAAAAA
*
784300 ACAACAA
1 AAAACAA
784307 CAATAACAAC
Statistics
Matches: 62, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
19 32 0.52
20 10 0.16
21 20 0.32
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAACAAAAAAAACAAAAA
Found at i:784252 original size:21 final size:21
Alignment explanation
Indices: 784221--784299 Score: 117
Period size: 21 Copynumber: 3.7 Consensus size: 21
784211 CCTCCACAAC
784221 AAAAC-AAAAAAAAACAAAAA
1 AAAACAAAAAAAAAACAAAAA
784241 AAAACAAAAAAAAAACAAAAA
1 AAAACAAAAAAAAAACAAAAA
784262 AAAACAAAAAAAACAA-AAAAA
1 AAAACAAAAAAAA-AACAAAAA
784283 AACAACAACAAAAAAAA
1 AA-AACAA-AAAAAAAA
784300 ACAACAACAA
Statistics
Matches: 55, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.09
21 35 0.64
22 9 0.16
23 6 0.11
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (21 bp):
AAAACAAAAAAAAAACAAAAA
Found at i:784305 original size:3 final size:3
Alignment explanation
Indices: 784283--784324 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
784273 AACAAAAAAA
* *
784283 AAC AAC AAC AA- AA- AAA AAC AAC AAC AAT AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
784325 AAAGGGTCCG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.74, C:0.24, G:0.00, T:0.02
Consensus pattern (3 bp):
AAC
Found at i:784314 original size:28 final size:26
Alignment explanation
Indices: 784221--784327 Score: 114
Period size: 26 Copynumber: 4.1 Consensus size: 26
784211 CCTCCACAAC
784221 AAAACAAAAAAAAACAA-AA-AAAAA
1 AAAACAAAAAAAAACAACAACAAAAA
* *
784245 CAAAA-AAAAAACAAAAAAAAAC-AAAA
1 -AAAACAAAAAA-AAACAACAACAAAAA
784271 AAAACAAAAAAAAACAACAACAAAAA
1 AAAACAAAAAAAAACAACAACAAAAA
* *
784297 AAAACAACAACAATAACAACAACAACAA
1 AAAACAA-AA-AAAAACAACAACAAAAA
784325 AAA
1 AAA
784328 GGGTCCGGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
24 6 0.09
25 21 0.30
26 23 0.33
27 2 0.03
28 18 0.26
ACGTcount: A:0.84, C:0.15, G:0.00, T:0.01
Consensus pattern (26 bp):
AAAACAAAAAAAAACAACAACAAAAA
Found at i:784327 original size:31 final size:25
Alignment explanation
Indices: 784221--784303 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
784211 CCTCCACAAC
784221 AAAACAAAAAAAAACAAAAAAAAACAA
1 AAAAC-AAAAAAAACAAAAAAAAA-AA
* *
784248 AAAA-AAAACAAA-AAAAAACAAAA
1 AAAACAAAAAAAACAAAAAAAAAAA
* *
784271 AAAACAAAAAAAAACAACAACAAAAA
1 AAAAC-AAAAAAAACAAAAAAAAAAA
784297 AAAACAA
1 AAAACAA
784304 CAACAATAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 6 0.13
24 8 0.17
25 16 0.34
26 13 0.28
27 4 0.09
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (25 bp):
AAAACAAAAAAAACAAAAAAAAAAA
Found at i:785791 original size:30 final size:30
Alignment explanation
Indices: 785757--785883 Score: 96
Period size: 30 Copynumber: 4.1 Consensus size: 30
785747 ATTCCTCACC
*
785757 TTTCAAAAGCCCACAAGTTAGTGGCA-TCTT
1 TTTC-AAAGCCCACAACTTAGTGGCACTCTT
*
785787 TTTCAAAGCCCACAACTTCGTGGCACTCTTTT
1 TTTCAAAGCCCACAACTTAGTGGCACTC--TT
* * * **
785819 TCCTTCTAAGTCCACGACTCCGTGGCAC-CTT
1 T--TTCAAAGCCCACAACTTAGTGGCACTCTT
* **
785850 CTTTCAAAGCCCATAACTCCGTGGCACTCTT
1 -TTTCAAAGCCCACAACTTAGTGGCACTCTT
785881 TTT
1 TTT
785884 TCCCTTTTAA
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
29 19 0.24
30 30 0.38
31 5 0.06
32 4 0.05
33 1 0.01
34 21 0.26
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.32
Consensus pattern (30 bp):
TTTCAAAGCCCACAACTTAGTGGCACTCTT
Found at i:785797 original size:29 final size:31
Alignment explanation
Indices: 785757--785820 Score: 96
Period size: 29 Copynumber: 2.1 Consensus size: 31
785747 ATTCCTCACC
*
785757 TTTCAAAAGCCCACAAGTTAGTGGCA-TCTT
1 TTTCAAAAGCCCACAACTTAGTGGCACTCTT
*
785787 TTTC-AAAGCCCACAACTTCGTGGCACTCTT
1 TTTCAAAAGCCCACAACTTAGTGGCACTCTT
785817 TTTC
1 TTTC
785821 CTTCTAAGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (31 bp):
TTTCAAAAGCCCACAACTTAGTGGCACTCTT
Found at i:785933 original size:33 final size:34
Alignment explanation
Indices: 785796--785945 Score: 150
Period size: 37 Copynumber: 4.5 Consensus size: 34
785786 TTTTCAAAGC
*
785796 CCACAACTTCGTGGCACTCTTTTTCCTTCTAAGT
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGT
* * * *
785830 CCACGACTCCGTGGCAC-C---TT-CTTTCAAAGC
1 CCACAACTTCGTGGCACTCTTTTTCCTTT-TAAGT
* *
785860 CCATAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGT
1 CCACAACTTCGTGGCACTC-TTTTT-CCTTTT-AAGT
*
785897 CCACAACTTCGTGGCAC-CTTGTTCCTTTTAAGT
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGT
785930 CCACAACTTCGTGGCA
1 CCACAACTTCGTGGCA
785946 TCTATCACCC
Statistics
Matches: 95, Mismatches: 12, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
29 3 0.03
30 20 0.21
31 1 0.01
33 21 0.22
34 21 0.22
35 6 0.06
36 1 0.01
37 22 0.23
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.33
Consensus pattern (34 bp):
CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGT
Found at i:785958 original size:34 final size:34
Alignment explanation
Indices: 785786--785970 Score: 103
Period size: 34 Copynumber: 5.4 Consensus size: 34
785776 AGTGGCATCT
* ***
785786 TTTTCAAAGCCCACAACTTCGTGGCACTCTTTTTCC
1 TTTT-AAAGTCCACAACTTCGTGGCAC-CTTCACCC
* * *
785822 TTCT-AAGTCCACGACTCCGTGGCACCTT----C
1 TTTTAAAGTCCACAACTTCGTGGCACCTTCACCC
* * * * **
785851 TTTCAAAGCCCATAACTCCGTGGCACTCTTTTTTCCC
1 TTTTAAAGTCCACAACTTCGTGGCAC-C--TTCACCC
***
785888 TTTTAAAGTCCACAACTTCGTGGCACCTTGTTCC
1 TTTTAAAGTCCACAACTTCGTGGCACCTTCACCC
*
785922 TTTT-AAGTCCACAACTTCGTGGCATCTATCACCC
1 TTTTAAAGTCCACAACTTCGTGGCACCT-TCACCC
*
785956 TTTTTAAAGCCCACA
1 -TTTTAAAGTCCACA
785971 CAAGTCGGTG
Statistics
Matches: 118, Mismatches: 20, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
29 3 0.03
30 18 0.15
31 1 0.01
33 27 0.23
34 30 0.25
35 4 0.03
36 12 0.10
37 23 0.19
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.34
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTTCGTGGCACCTTCACCC
Found at i:786065 original size:33 final size:33
Alignment explanation
Indices: 785952--786086 Score: 181
Period size: 31 Copynumber: 4.2 Consensus size: 33
785942 GGCATCTATC
*
785952 ACCCTT-TTTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
785984 ACCCTTC-CTAAAG-CCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
786015 ACCC-CCTC-AAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
786046 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
786079 ACCCTTCT
1 ACCCTTCT
786087 AAGCCCAATA
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
30 5 0.06
31 43 0.48
32 14 0.16
33 28 0.31
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:787055 original size:20 final size:20
Alignment explanation
Indices: 787011--787101 Score: 90
Period size: 20 Copynumber: 5.0 Consensus size: 20
787001 ATTTCAACGA
***
787011 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATATTTT
*
787031 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
787051 TTTGTATCGATACA-A----
1 TTTGTATCGATACATATTTT
787066 --TGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
787084 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
787102 AAGCTACTGC
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
13 12 0.20
14 1 0.02
19 5 0.08
20 41 0.69
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:787071 original size:13 final size:13
Alignment explanation
Indices: 787053--787077 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
787043 CATATTTTTT
787053 TGTATCGATACAA
1 TGTATCGATACAA
787066 TGTATCGATACA
1 TGTATCGATACA
787078 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:787075 original size:33 final size:33
Alignment explanation
Indices: 787033--787099 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
787023 CATAAAGTGT
787033 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATATTTTTTTGTATCGATACAA
787066 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATATTTTTTTGTATCGATACAA
787099 T
1 T
787100 TTAAGCTACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.46
Consensus pattern (33 bp):
TGTATCGATACATATTTTTTTGTATCGATACAA
Found at i:787158 original size:13 final size:13
Alignment explanation
Indices: 787140--787164 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
787130 ATCACTTAAA
787140 TGTATCGATACAT
1 TGTATCGATACAT
787153 TGTATCGATACA
1 TGTATCGATACA
787165 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:787229 original size:52 final size:52
Alignment explanation
Indices: 787173--787301 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
787163 CACTAATCTT
*
787173 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATAAAA
* **
787225 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATAAAA
*
787277 TGTATCGATACACGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
787302 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATAAAA
Found at i:792512 original size:13 final size:13
Alignment explanation
Indices: 792494--792521 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
792484 TGCAACATGA
792494 CATTTCAAGTGAC
1 CATTTCAAGTGAC
792507 CATTTCAAGTGAC
1 CATTTCAAGTGAC
792520 CA
1 CA
792522 AAAATGACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (13 bp):
CATTTCAAGTGAC
Found at i:796060 original size:3 final size:3
Alignment explanation
Indices: 796052--796085 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
796042 TCCAAGTCAA
*
796052 CAT CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
796086 GTCTTTGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:797689 original size:20 final size:19
Alignment explanation
Indices: 797664--797713 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 19
797654 GAAGCAATGC
797664 ATCGATACAAT-TCATCATGT
1 ATCGATACAATATC--CATGT
797684 ATCGATACAATATGCCATGT
1 ATCGATACAATAT-CCATGT
797704 ATCGATACAA
1 ATCGATACAA
797714 ACAGTGGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 26 0.93
21 1 0.04
22 1 0.04
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (19 bp):
ATCGATACAATATCCATGT
Found at i:800099 original size:154 final size:154
Alignment explanation
Indices: 799735--800114 Score: 430
Period size: 154 Copynumber: 2.5 Consensus size: 154
799725 TATCCCGATA
* *
799735 ACCCTAAAAGACTT-AAAAAGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCAGCAT
1 ACCCTAAAAGACTTAAAAAAGATTTTAAATGAGATGAACCTATCCTAAATACCCACCTTCAGCAT
** * * * * *
799799 AAAAGTGGACTCAGTGACAACCTAAGAGTTGGTTCTAAAAAATTATAAAGATGCCCCTAGAAGAT
66 AAAAGCAGACTCAATGACAACATAAAAGTTGGTTCTAAAAAATTACAAAGATACCCCTAGAAGAT
* * *
799864 ACCTTCGATGTAGAAGTACTCGAT
131 ACCTTCGACGTAAAAGTACTCAAT
* * * * *
799888 ACTCCTAAAGGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTCAGCA
1 AC-CCTAAAAGACTTAAAAAAGATTTTAAATGAGATGAACCTATCCTAAATACCCACCTTCAGCA
** * * * *
799953 TAAAAGCAGA-TCCAATGATGATATAAAAGTTGGTTTTAAAAAATTACGAA-ATACCCTTA-AAG
65 TAAAAGCAGACT-CAATGACAACATAAAAGTTGGTTCTAAAAAATTACAAAGATACCCCTAGAA-
*
800015 GATACCCTT-GACGTAAAAGTACTTAAT
128 GATA-CCTTCGACGTAAAAGTACTCAAT
* *
800042 ATCCCTAAAAGACTTAAAAAAGATTTTAAATGTGATGAACATA-CCATAAATACCCACCTTCAGC
1 A-CCCTAAAAGACTTAAAAAAGATTTTAAATGAGATGAACCTATCC-TAAATACCCACCTTCAGC
800106 ATAAAAGCA
64 ATAAAAGCA
800115 AATCGAGTTC
Statistics
Matches: 190, Mismatches: 30, Indels: 13
0.82 0.13 0.06
Matches are distributed among these distances:
153 6 0.03
154 99 0.52
155 85 0.45
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (154 bp):
ACCCTAAAAGACTTAAAAAAGATTTTAAATGAGATGAACCTATCCTAAATACCCACCTTCAGCAT
AAAAGCAGACTCAATGACAACATAAAAGTTGGTTCTAAAAAATTACAAAGATACCCCTAGAAGAT
ACCTTCGACGTAAAAGTACTCAAT
Found at i:801831 original size:48 final size:46
Alignment explanation
Indices: 801760--801917 Score: 154
Period size: 48 Copynumber: 3.3 Consensus size: 46
801750 TTGACTATAT
* * *
801760 CTGGTCAAACTCTTTTCATCCCTCATTTAACTATATTGGTGTTAGGGC
1 CTGGTCAAACTC--TTCTTCCCTCATTTGACTGTATTGGTGTTAGGGC
* * *
801808 CTGGTCAAACTCAAATCTTCCCTCGTTTGGCTGTATTGGTGTTAGGGC
1 CTGGTCAAACTC--TTCTTCCCTCATTTGACTGTATTGGTGTTAGGGC
** * * *
801856 CTAATCAAATTCTTTTTACCCCTCATTTGACTGTATTGGTGTTAAGGC
1 CTGGTCAAACTCTTCTT--CCCTCATTTGACTGTATTGGTGTTAGGGC
*
801904 TTGGTCAAACTCTT
1 CTGGTCAAACTCTT
801918 ATCTTTCCTA
Statistics
Matches: 88, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
46 3 0.03
48 85 0.97
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.39
Consensus pattern (46 bp):
CTGGTCAAACTCTTCTTCCCTCATTTGACTGTATTGGTGTTAGGGC
Found at i:801953 original size:44 final size:44
Alignment explanation
Indices: 801905--802079 Score: 122
Period size: 44 Copynumber: 4.0 Consensus size: 44
801895 TGTTAAGGCT
*
801905 TGGTCAAACTCTTATC-TTTCCTATCTGATGTATGGTTACCACCC
1 TGGTCAAACTCTTATCATTT-CGATCTGATGTATGGTTACCACCC
* * * *
801949 TGGTCAGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCC
1 TGGTCAAACTCTTATCATTTCGATCTGATGTATGGTTACCACCC
* * * * * ** *
801993 TGATC-AAGTCTGCATC-TTTCTTATCTAACATACGGTTACCACCC
1 TGGTCAAACTCT-TATCATTTC-GATCTGATGTATGGTTACCACCC
* * * * * * *
802037 TAGTCAGATTCTTTTCATTTTGATTTGACGTATGGTTACCACC
1 TGGTCAAACTCTTATCATTTCGATCTGATGTATGGTTACCACC
802080 TTAGTTAAAT
Statistics
Matches: 98, Mismatches: 28, Indels: 10
0.72 0.21 0.07
Matches are distributed among these distances:
43 8 0.08
44 80 0.82
45 10 0.10
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (44 bp):
TGGTCAAACTCTTATCATTTCGATCTGATGTATGGTTACCACCC
Found at i:802018 original size:88 final size:88
Alignment explanation
Indices: 801918--802079 Score: 252
Period size: 88 Copynumber: 1.8 Consensus size: 88
801908 TCAAACTCTT
* ** * * *
801918 ATCTTTCCTATCTGATGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGATGTATG
1 ATCTTTCCTATCTAACATACGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACGTATG
801983 GTTACCACCCTGATCAAGTCTGC
66 GTTACCACCCTGATCAAGTCTGC
* *
802006 ATCTTTCTTATCTAACATACGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATTTGACGTATG
1 ATCTTTCCTATCTAACATACGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACGTATG
802071 GTTACCACC
66 GTTACCACC
802080 TTAGTTAAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 66 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (88 bp):
ATCTTTCCTATCTAACATACGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACGTATG
GTTACCACCCTGATCAAGTCTGC
Found at i:802102 original size:88 final size:87
Alignment explanation
Indices: 801938--802178 Score: 270
Period size: 88 Copynumber: 2.7 Consensus size: 87
801928 TCTGATGTAT
* * *
801938 GGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGATCAAGTC
1 GGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGACGTATGGTTACCACCCTGATCAAATC
802003 TGCATCTTTCTTATCTAACATAC
66 -GCATCTTTCTTATCTAACATAC
* * *
802026 GGTTACCACCCTAGTCAGATTCTTTTCATTTTGATTTGACGTATGGTTACCA-CCTTAGTTAAAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGACGTATGGTTACCACCCTGA-TCAAAT
* * *
802090 C-CATCTCCTTCTTGTCTGACATAT
65 CGCATCT--TTCTTATCTAACATAC
* * * * * * * *
802114 GGTTACAACCTTGGTCAAATTGTTTTCCATTCTGATTTGACATATGGTTATCACCCTGGTCAAAT
1 GGTTACCACCCTGGTCAGATTCTTTT-CATTTTGATTTGACGTATGGTTACCACCCTGATCAAAT
802179 TTGCCTTATT
Statistics
Matches: 128, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
86 5 0.04
87 4 0.03
88 88 0.69
89 28 0.22
90 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (87 bp):
GGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGACGTATGGTTACCACCCTGATCAAATC
GCATCTTTCTTATCTAACATAC
Found at i:802363 original size:42 final size:42
Alignment explanation
Indices: 802317--802562 Score: 190
Period size: 42 Copynumber: 5.9 Consensus size: 42
802307 CTGTTCATCA
* * * *
802317 GCTTTGACCCGAGAGAC-TCTTTTACCCTTTGTCTGCCTGTCG
1 GCTTTGACCCGGGAGACTTC-TTCACCCTTTGTCTGCCCGTTG
* * * *
802359 GCTTTGACCTGGGAGACTTCTTCACCTTTTGTCAGCCCATTG
1 GCTTTGACCCGGGAGACTTCTTCACCCTTTGTCTGCCCGTTG
* *
802401 GCTTTGACTCGGGAGACTTCTTCACCCTTTGTCTACCCGTTG
1 GCTTTGACCCGGGAGACTTCTTCACCCTTTGTCTGCCCGTTG
* * *
802443 GTTTTGACCCGGGAGACATT-TTTACCCTTTGTTTGCCCGTTG
1 GCTTTGACCCGGGAGAC-TTCTTCACCCTTTGTCTGCCCGTTG
* * *** * ** * * **
802485 ACCTTGACTTAGGAGACTTTTTTTCCCTTTGTCTACCCATCA
1 GCTTTGACCCGGGAGACTTCTTCACCCTTTGTCTGCCCGTTG
* * * * *
802527 ACTTTGACCTGGGAGACTTCTTTATCTTTTGTCTGC
1 GCTTTGACCCGGGAGACTTCTTCACCCTTTGTCTGC
802563 TCATTCGCTC
Statistics
Matches: 162, Mismatches: 39, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
41 2 0.01
42 156 0.96
43 4 0.02
ACGTcount: A:0.14, C:0.28, G:0.20, T:0.39
Consensus pattern (42 bp):
GCTTTGACCCGGGAGACTTCTTCACCCTTTGTCTGCCCGTTG
Found at i:802449 original size:84 final size:84
Alignment explanation
Indices: 802317--802559 Score: 247
Period size: 84 Copynumber: 2.9 Consensus size: 84
802307 CTGTTCATCA
* * * *
802317 GCTTTGACCCGAGAGAC-TCTTTTACCCTTTGTCTGCCTGTCGGCTTTGACCTGGGAGACTTCTT
1 GCTTTGACTCGGGAGACTTC-TTTACCCTTTGTCTACCCGTCGGCTTTGACCTGGGAGACTTCTT
*
802381 CACCTTTTGTCAGCCCATTG
65 TACCTTTTGTCAGCCCATTG
* * * *
802401 GCTTTGACTCGGGAGACTTCTTCACCCTTTGTCTACCCGTTGGTTTTGACCCGGGAGACATT-TT
1 GCTTTGACTCGGGAGACTTCTTTACCCTTTGTCTACCCGTCGGCTTTGACCTGGGAGAC-TTCTT
* ** *
802465 TACCCTTTGTTTGCCCGTTG
65 TACCTTTTGTCAGCCCATTG
* * ** * * * **
802485 ACCTTGACTTAGGAGACTTTTTTTCCCTTTGTCTACCCATCAACTTTGACCTGGGAGACTTCTTT
1 GCTTTGACTCGGGAGACTTCTTTACCCTTTGTCTACCCGTCGGCTTTGACCTGGGAGACTTCTTT
*
802550 ATCTTTTGTC
66 ACCTTTTGTC
802560 TGCTCATTCG
Statistics
Matches: 127, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
83 2 0.02
84 121 0.95
85 4 0.03
ACGTcount: A:0.14, C:0.28, G:0.20, T:0.39
Consensus pattern (84 bp):
GCTTTGACTCGGGAGACTTCTTTACCCTTTGTCTACCCGTCGGCTTTGACCTGGGAGACTTCTTT
ACCTTTTGTCAGCCCATTG
Found at i:802628 original size:42 final size:42
Alignment explanation
Indices: 802537--802636 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
802527 ACTTTGACCT
* *
802537 GGGAGACTTCTTTATCTTTTGTCTGCTCATTCGCTCAATCTC
1 GGGAGACTTCTTTATCTTTTATCTGCCCATTCGCTCAATCTC
***
802579 AAAAGACTTCTTTATCTTTTATCTGCCCA-TCTGCTCAGA-CTC
1 GGGAGACTTCTTTATCTTTTATCTGCCCATTC-GCTCA-ATCTC
*
802621 GGGAGACTACTTTATC
1 GGGAGACTTCTTTATC
802637 CATTATCTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
41 2 0.04
42 44 0.94
43 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (42 bp):
GGGAGACTTCTTTATCTTTTATCTGCCCATTCGCTCAATCTC
Found at i:803060 original size:82 final size:83
Alignment explanation
Indices: 802916--803127 Score: 232
Period size: 82 Copynumber: 2.6 Consensus size: 83
802906 TCAACTTTTT
* * * *
802916 ATCCATTGTTTACTTGTCAGCTTAGTCCTAGGTAAATCTTTTATCCTCTGTTCACTTGTTGGTTC
1 ATCCCTTGTTTACTTGTCAGCTTAGTCCTACGTAAATCTTTTATCCGCTGTTCACTTATTGGTTC
*
802981 GATCCCGA-TCAA-CTTTC
66 AAT-CCGAGTCAATCTTTC
* * ** *
802998 TTCTCTTGTTTACTTGTTGGCTTAGTCCTACGTAAATCTTTTATCCGCTGTTGA-TTCATTGGTT
1 ATCCCTTGTTTACTTGTCAGCTTAGTCCTACGTAAATCTTTTATCCGCTGTTCACTT-ATTGGTT
*
803062 CAATCCTAGTCAATCTTTC
65 CAATCCGAGTCAATCTTTC
* * ***
803081 ATCCCTTGTTTACCTATCAGCTTAGTCCCGGGTAAATCTTTTTATCC
1 ATCCCTTGTTTACTTGTCAGCTTAGTCCTACGTAAATC-TTTTATCC
803128 TTTGTTGGCT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
81 5 0.05
82 59 0.56
83 34 0.32
84 8 0.08
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (83 bp):
ATCCCTTGTTTACTTGTCAGCTTAGTCCTACGTAAATCTTTTATCCGCTGTTCACTTATTGGTTC
AATCCGAGTCAATCTTTC
Found at i:804641 original size:166 final size:166
Alignment explanation
Indices: 804221--804866 Score: 742
Period size: 167 Copynumber: 3.9 Consensus size: 166
804211 AAATTACAGG
* * ** ** * *
804221 GTTTTCTTCTCCATAAATTTTTTCAAGAAGATTTTTCTTAATTTTTAATTTTTAAAATTCATAAA
1 GTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
* ** * * * * *
804286 ATATTTTTATTTATTTCATATTAATTTAATTTTCAAAAATTCATTCATTTTCATGAGCTTTTAAT
66 ACATCATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGAT
* *
804351 TTTTTTCCTT-AAAATTCTTATTTTTTTCGAAATACGGT
131 TTTTTTCCTTGAAACTTC--A-TTTTTTCTAAATACGGT
* *
804389 GTTTTCTACTCCGTAAATTTTTTTCGAGGGGATTTTTCTTAGTTTTCAAATTTTAAAATTCATCA
1 GTTTTCTACTCCGTAAATTTTTTT-GAGGGGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAA
* * * *
804454 AACATTATCT-TTTATTTCATATTATTTTAGTTTTCAAAATTTCATTCATTTTCATAAGTTTTTG
65 AACATCAT-TATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAGTTTTTG
804518 ATTTTTTTCCTTGAAACTTCATTTTTTCTAAAATACGGT
129 ATTTTTTTCCTTGAAACTTCATTTTTTCT-AAATACGGT
* * * *
804557 GTTTTCTACTCCGT-AATTTTTTTTAGGGGATTTTTCTTGGTTTTCAATTTTCAAAATTCATCAA
1 GTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
* ** * *
804621 ACATCATTATTTATTTCATATTAGTTCAGTTTTTTAAAATTCATTCATTTTCATGAGTTTTTGGT
66 ACATCATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGAT
* * *
804686 TTTGTTCCTTGAAACTCCCATTTTTCCTAAATACGGT
131 TTTTTTCCTTGAAACT-TCATTTTTTCTAAATACGGT
* * *** * * * *
804723 TTTTTCTACTTCGTAAATTTTTTTGAACAGATTTTTCTTACTTTTCAATTTTTAGAGTACATAAA
1 GTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
* * *
804788 AAATCATCATTTGA-TTCATATTAATTCATTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGA
66 ACATCATTATTT-ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGA
* *
804852 ATTTTTTCTTTGAAA
130 TTTTTTTCCTTGAAA
804867 TCCCTATTTT
Statistics
Matches: 411, Mismatches: 59, Indels: 17
0.84 0.12 0.03
Matches are distributed among these distances:
165 1 0.00
166 128 0.31
167 130 0.32
168 46 0.11
169 99 0.24
170 7 0.02
ACGTcount: A:0.28, C:0.13, G:0.08, T:0.52
Consensus pattern (166 bp):
GTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
ACATCATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGAT
TTTTTTCCTTGAAACTTCATTTTTTCTAAATACGGT
Found at i:804897 original size:167 final size:168
Alignment explanation
Indices: 804221--804883 Score: 714
Period size: 166 Copynumber: 4.0 Consensus size: 168
804211 AAATTACAGG
* * ** * * *
804221 GTTTTCTTCTCCATAAATTTTTTCAAGAAGATTTTTCTTAATTTTTAATTTTTAAAATTCATAAA
1 GTTTTCTACTCCGTAAATTTTTTTGAGGAGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
* ** * * * * *
804286 ATATTTTTATTTATTTCATATTAATTTAATTTTCAAAAATTCATTCATTTTCATGAGCTTTT-AA
66 ACATCATCATTTATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGAA
* * * * *
804350 TTTTTTTCCTT-AAAATTCTTATTTTTTTCGAAATACGGT
131 -TTTTTTCCTTGAAACTCCCTA-TTTTTCCAAAATACGGT
* * *
804389 GTTTTCTACTCCGTAAATTTTTTTCGAGGGGATTTTTCTTAGTTTTCAAATTTTAAAATTCATCA
1 GTTTTCTACTCCGTAAATTTTTTT-GAGGAGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAA
* * * * * *
804454 AACATTATCTTTTATTTCATATTATTTTAGTTTTCAAAATTTCATTCATTTTCATAAGTTTTTGA
65 AACATCATCATTTATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGA
* * * *
804519 TTTTTTTCCTTGAAACTTCAT-TTTTTCTAAAATACGGT
130 ATTTTTTCCTTGAAACTCCCTATTTTTCCAAAATACGGT
* * * * *
804557 GTTTTCTACTCCGT-AATTTTTTTTAGGGGATTTTTCTTGGTTTTCAATTTTCAAAATTCATCAA
1 GTTTTCTACTCCGTAAATTTTTTTGAGGAGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
* * * *
804621 ACATCATTATTTATTTCATATTAGTTCAGTTTTT-TAAAATTCATTCATTTTCATGAGTTTTTG-
66 ACATCATCATTTATTTCATATTAATTCA-TTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGA
* *
804684 GTTTTGTTCCTTGAAACTCCC-ATTTTTCCTAAATACGGT
130 ATTTT-TTCCTTGAAACTCCCTATTTTTCCAAAATACGGT
* * ** * * * *
804723 TTTTTCTACTTCGTAAATTTTTTTGAACAGATTTTTCTTACTTTTCAATTTTTAGAGTACATAAA
1 GTTTTCTACTCCGTAAATTTTTTTGAGGAGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
*
804788 AAATCATCATTTGA-TTCATATTAATTCATTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGA
66 ACATCATCATTT-ATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGA
* *
804852 ATTTTTTCTTTGAAA-TCCCTATTTTCCCAAAA
130 ATTTTTTCCTTGAAACTCCCTATTTTTCCAAAA
804884 AATTGAGTTT
Statistics
Matches: 419, Mismatches: 65, Indels: 23
0.83 0.13 0.05
Matches are distributed among these distances:
165 4 0.01
166 135 0.32
167 121 0.29
168 54 0.13
169 97 0.23
170 8 0.02
ACGTcount: A:0.28, C:0.13, G:0.07, T:0.52
Consensus pattern (168 bp):
GTTTTCTACTCCGTAAATTTTTTTGAGGAGATTTTTCTTAGTTTTCAATTTTTAAAATTCATAAA
ACATCATCATTTATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTTCATAAGTTTTTGAA
TTTTTTCCTTGAAACTCCCTATTTTTCCAAAATACGGT
Found at i:805373 original size:18 final size:19
Alignment explanation
Indices: 805338--805376 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
805328 ATAAACATTT
* *
805338 AATGCAAAATGGCTTGGGA
1 AATGCAAAAAGGCATGGGA
805357 AATG-AAAAAGGCATGGGA
1 AATGCAAAAAGGCATGGGA
805375 AA
1 AA
805377 AAATGAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.46, C:0.08, G:0.31, T:0.15
Consensus pattern (19 bp):
AATGCAAAAAGGCATGGGA
Found at i:807865 original size:153 final size:154
Alignment explanation
Indices: 807377--807978 Score: 634
Period size: 153 Copynumber: 3.9 Consensus size: 154
807367 GGGTTTTTCA
* *
807377 TAATTTTCCAAAA-CCAGCTCCTAGGTTGTCACTGAGT-TCGCTTTTATGCCGAAGGTGGGTATT
1 TAATTTTCTAAAATCGAG-TCCTAGGTTGTCACTGAGTCT-GCTTTTATGCCGAAGGTGGGTATT
** * * * * *
807440 TATAATAGGTTCATCCCATCTC-TAACCTTTTTAAGTCCTTTAGGGGTATCAGGTACT-TCTACG
64 TAGGATAGGTTCACCCCATC-CATATCCTTTTTAAATCCTTTAGGGGTATCAAGCACTGT-TACG
* *
807503 TCAAAGGTATCCCTTAGGGGTATTTTGG
127 TCAAAGGTATCCCTTAGGAGCATTTTGG
* * * * *
807531 TAATTTTCTAAAATCGAGTCCTCA-ATTGCCATCGGA-TCCGAACTTTTATGCCGAATGTGGGTA
1 TAATTTTCTAAAATCGAGTCCT-AGGTTGTCA-CTGAGTCTG--CTTTTATGCCGAAGGTGGGTA
* * * * *
807594 TTTAGGATTGGTTCACCCTATCCATATCCTTATT-AATCCTTTAGGGGTATCGAGCACTGTTATG
62 TTTAGGATAGGTTCACCCCATCCATATCCTTTTTAAATCCTTTAGGGGTATCAAGCACTGTTACG
* * *
807658 TTAAAGGTATCCTTTA-AAGGCATTTTGG
127 TCAAAGGTATCCCTTAGGA-GCATTTTGG
* * *
807686 TAATTTTCTAAAATC-AGGTCCTAGGTTGTCACTGAGTCTGCTTTTATGTCGAAGGTGGGTAGTA
1 TAATTTTCTAAAATCGA-GTCCTAGGTTGTCACTGAGTCTGCTTTTATGCCGAAGGTGGGTATTT
* * * * *
807750 ATGATAGTTTCACCCCATCCATATCTTTTTTAAATCCTTTAGGGGTAT-TAGTTACTGTTACGTC
65 AGGATAGGTTCACCCCATCCATATCCTTTTTAAATCCTTTAGGGGTATCAAG-CACTGTTACGTC
*
807814 AAAGGTATCCCTTAGGAGCATTTTTG
129 AAAGGTATCCCTTAGGAGCATTTTGG
* * ** *
807840 TAATTTT-TAAAATCGAGTCCTAGGTTGTGA-TCGGGTCTAATTGTATGCCGAAGGTGGGTATTT
1 TAATTTTCTAAAATCGAGTCCTAGGTTGTCACT-GAGTCTGCTTTTATGCCGAAGGTGGGTATTT
* * * *
807903 AGGATAGGTTCACCCTATCCATATACTTTTTAAATCCTTTAGGGGTATCAAGCAATGTTACGTCG
65 AGGATAGGTTCACCCCATCCATATCCTTTTTAAATCCTTTAGGGGTATCAAGCACTGTTACGTCA
807968 AAGGTATCCCT
130 AAGGTATCCCT
807979 AATGTTACGT
Statistics
Matches: 368, Mismatches: 62, Indels: 37
0.79 0.13 0.08
Matches are distributed among these distances:
152 1 0.00
153 155 0.42
154 84 0.23
155 82 0.22
156 46 0.12
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (154 bp):
TAATTTTCTAAAATCGAGTCCTAGGTTGTCACTGAGTCTGCTTTTATGCCGAAGGTGGGTATTTA
GGATAGGTTCACCCCATCCATATCCTTTTTAAATCCTTTAGGGGTATCAAGCACTGTTACGTCAA
AGGTATCCCTTAGGAGCATTTTGG
Found at i:807984 original size:23 final size:23
Alignment explanation
Indices: 807956--808001 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
807946 GGTATCAAGC
807956 AATGTTACGTCGAAGGTATCCCT
1 AATGTTACGTCGAAGGTATCCCT
807979 AATGTTACGTCGAAGGTATCCCT
1 AATGTTACGTCGAAGGTATCCCT
808002 TAGGGGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
AATGTTACGTCGAAGGTATCCCT
Found at i:812887 original size:20 final size:20
Alignment explanation
Indices: 812862--812916 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
812852 TTTTAACTAG
*
812862 ATGTATCGAGACATTGAA-AA
1 ATGTATCGATACATT-AATAA
*
812882 ATGTATCGATATATTAATAA
1 ATGTATCGATACATTAATAA
812902 ATGTATCGATACATT
1 ATGTATCGATACATT
812917 TGGGCAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTAATAA
Found at i:814031 original size:32 final size:31
Alignment explanation
Indices: 813989--814087 Score: 108
Period size: 32 Copynumber: 3.1 Consensus size: 31
813979 CATTAGGTTT
* *
813989 AGAAGGGTTGCCACCAACTTGCGTGGGCTTGG
1 AGAA-GGTTGCCACCAACTTGTGTGGGCTTAG
*
814021 CAGAAGGTTGCCACCAATTTGTGTGGGCTTTAG
1 -AGAAGGTTGCCACCAACTTGTGTGGGC-TTAG
* * * *
814054 AGAAAGTTGCCACCGACTTGTGTGAGCTTTG
1 AGAAGGTTGCCACCAACTTGTGTGGGCTTAG
814085 AGA
1 AGA
814088 GAATGCTACT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
31 6 0.11
32 44 0.77
33 7 0.12
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.26
Consensus pattern (31 bp):
AGAAGGTTGCCACCAACTTGTGTGGGCTTAG
Found at i:814984 original size:28 final size:28
Alignment explanation
Indices: 814042--814986 Score: 984
Period size: 28 Copynumber: 33.6 Consensus size: 28
814032 CACCAATTTG
* *
814042 TGTGGGCTTTAGAGAAAGTTGCCACCGACT
1 TGTGGGCTTT-GA-AAAGGTGCCACTGACT
*
814072 TGTGTGAGCTTTGAGAGAA--TGCTACTGACT
1 TGTG-G-GCTTTGA-A-AAGGTGCCACTGACT
* *
814102 TGTGGGCCTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
814130 TATGGGCTTT-AAAAGGATTCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
814158 TGTGGGCTTT-AAGAAGGTGCCACTGACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
* * *
814186 TGCGGGCTTT-AAAACAGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
*
814214 TATGGGCTTTG-AAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
814242 TGTGGGCTTTGAAAATGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
814270 TGCGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * *
814298 TGTGGGCTTTGAAAAGATGTCACTAATT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
814326 TGTGGGCTTTGAGAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
814354 TGTGGGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * * *
814382 TATGGGCTTTGAGAAGGTGCCACTAAAT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
814410 TGCAGGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** *
814438 TACGGGCTTTGAAAAGGTGCCAATGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
814466 TGTGGGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** *
814494 TACGGGCTTTGAGAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
814522 TGCGGGCTTTGAGAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** *
814550 TACGGGCTTTGAAAAAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
814578 TACGAGCTTTG-AAAGGATGCTACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
814606 TGTGGGCTTTG-AAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
814634 TGCGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
814662 TGTGGGCTTCG-AATGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
814690 TGTGGGCTTTGAAAAGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
814718 TGCGGGCTTTG-AAAGGCTGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
814746 TGTGGGCTTTG-AAAGGATGCTACTTACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
814774 TGTGGGCTTTGAGAAGGTGCCACACTTACT
1 TGTGGGCTTTGAAAAGGTG-C-CACTGACT
**
814804 TGCAGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
**
814832 TGTGGGCTTTGAAAATATGCCA-TGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
814859 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
814887 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
814915 TGTGGGCTTTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
814943 TGCGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
814971 TGTGAGCTTTGAAAAG
1 TGTGGGCTTTGAAAAG
814987 AAAGTGTATT
Statistics
Matches: 794, Mismatches: 97, Indels: 50
0.84 0.10 0.05
Matches are distributed among these distances:
26 5 0.01
27 46 0.06
28 659 0.83
29 32 0.04
30 40 0.05
31 5 0.01
32 7 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:815014 original size:14 final size:14
Alignment explanation
Indices: 814995--815082 Score: 58
Period size: 14 Copynumber: 6.6 Consensus size: 14
814985 AGAAAGTGTA
814995 TTGACAAAAATTTC
1 TTGACAAAAATTTC
*
815009 TTGAC-AAACTTTC
1 TTGACAAAAATTTC
* *
815022 -TGATAAACA-TTC
1 TTGACAAAAATTTC
* * *
815034 TCGA-TAAAAGTTC
1 TTGACAAAAATTTC
* *
815047 TTGACGATAATTTC
1 TTGACAAAAATTTC
**
815061 TTGACAACCATTTC
1 TTGACAAAAATTTC
815075 TTGACAAA
1 TTGACAAA
815083 TGGTGAATTG
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
12 9 0.16
13 17 0.31
14 29 0.53
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.35
Consensus pattern (14 bp):
TTGACAAAAATTTC
Found at i:824599 original size:13 final size:13
Alignment explanation
Indices: 824581--824606 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
824571 CAATTTTTTG
824581 TGTATCGATACAT
1 TGTATCGATACAT
824594 TGTATCGATACAT
1 TGTATCGATACAT
824607 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:824671 original size:21 final size:21
Alignment explanation
Indices: 824645--824720 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
824635 CTGCCAAGAA
824645 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
824666 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
824686 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
824707 ATGTATCGATACAT
1 ATGTATCGATACAT
824721 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:824690 original size:20 final size:20
Alignment explanation
Indices: 824665--824738 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
824655 ACATCTTTTT
824665 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
824685 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
824706 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
824726 CATGTATCGATAC
1 CATGTATCGATAC
824739 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:824702 original size:41 final size:41
Alignment explanation
Indices: 824645--824738 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
824635 CTGCCAAGAA
824645 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
824686 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
824727 ATGTATCGATAC
1 ATGTATCGATAC
824739 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:827205 original size:13 final size:13
Alignment explanation
Indices: 827187--827225 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
827177 ATAATCACCC
*
827187 TGTATCGATACAG
1 TGTATCGATACAA
827200 TGTATCGATACAA
1 TGTATCGATACAA
827213 TGTATCGATACAA
1 TGTATCGATACAA
827226 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:827236 original size:20 final size:20
Alignment explanation
Indices: 827211--827289 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
827201 GTATCGATAC
827211 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
827231 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
827256 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
827276 CATGTATCGATACA
1 AATGTATCGATACA
827290 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:831167 original size:21 final size:21
Alignment explanation
Indices: 831138--831182 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
831128 AAGTTTTCAT
*
831138 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
831158 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
831180 TTT
1 TTT
831183 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Done.