Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold962
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 160331
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:135187 original size:19 final size:20
Alignment explanation
Indices: 135163--135215 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
135153 ATCGATACAA
**
135163 TGTATCGATACATGTTCA-T
1 TGTATCGATACATGGACAGT
135182 TGTATCGATACATGGACAGT
1 TGTATCGATACATGGACAGT
135202 TGTATCGATACATG
1 TGTATCGATACATG
135216 AAATTGGCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATGGACAGT
Found at i:135281 original size:13 final size:13
Alignment explanation
Indices: 135260--135312 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
135250 CGATACATGG
*
135260 TACAATGTATCGA
1 TACATTGTATCGA
135273 TACATTGTATCGA
1 TACATTGTATCGA
135286 TACA-TG-AT-G-
1 TACATTGTATCGA
135295 -A-ATTGTATCGA
1 TACATTGTATCGA
135306 TACATTG
1 TACATTG
135313 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:135286 original size:33 final size:33
Alignment explanation
Indices: 135244--135312 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
135234 CTACCACTAT
*
135244 TTGTATCGATACATGGT-ACAATGTATCGATACA
1 TTGTATCGATACATGATGA-AATGTATCGATACA
*
135277 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAAATGTATCGATACA
135310 TTG
1 TTG
135313 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGATGAAATGTATCGATACA
Found at i:136469 original size:16 final size:16
Alignment explanation
Indices: 136431--136475 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
136421 CAGGTTTGGA
*
136431 CCTATTCGAGTTTCGG
1 CCTATTTGAGTTTCGG
*
136447 TCTATTTGAGTTTCGG
1 CCTATTTGAGTTTCGG
*
136463 CCTATTTGGGTTT
1 CCTATTTGAGTTT
136476 GAGGTTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.11, C:0.18, G:0.24, T:0.47
Consensus pattern (16 bp):
CCTATTTGAGTTTCGG
Found at i:136500 original size:16 final size:16
Alignment explanation
Indices: 136448--136510 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
136438 GAGTTTCGGT
*
136448 CTATTTGAGTTTC-GGC
1 CTATTTG-GGTTCAGGC
*
136464 CTATTTGGGTTTGAGG-
1 CTATTTGGG-TTCAGGC
*
136480 TTATTTGGGTTCAGGC
1 CTATTTGGGTTCAGGC
*
136496 CTATTCGGGTTCAGG
1 CTATTTGGGTTCAGG
136511 TCTTTTCAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 6 0.16
16 30 0.79
17 2 0.05
ACGTcount: A:0.13, C:0.14, G:0.32, T:0.41
Consensus pattern (16 bp):
CTATTTGGGTTCAGGC
Found at i:136553 original size:16 final size:16
Alignment explanation
Indices: 136513--136555 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
136503 GGTTCAGGTC
*
136513 TTTTCAAGTTTGGGCT
1 TTTTCAAGTTCGGGCT
136529 TTTT-AAGTTCGGGCT
1 TTTTCAAGTTCGGGCT
*
136544 TTTTCTAGTTCG
1 TTTTCAAGTTCG
136556 AGTTTAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.12, C:0.14, G:0.23, T:0.51
Consensus pattern (16 bp):
TTTTCAAGTTCGGGCT
Found at i:136762 original size:18 final size:18
Alignment explanation
Indices: 136714--136772 Score: 77
Period size: 18 Copynumber: 3.2 Consensus size: 18
136704 TTTTTAATAT
136714 ATTTATT-TATTAAAATCTA
1 ATTTATTATA-TAAAAT-TA
136733 TATTTA-TATATAAAATTA
1 -ATTTATTATATAAAATTA
136751 ATTTATTATATAAAATTA
1 ATTTATTATATAAAATTA
136769 ATTT
1 ATTT
136773 TTAAATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.14
18 18 0.49
19 7 0.19
20 7 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTATTATATAAAATTA
Found at i:137996 original size:16 final size:16
Alignment explanation
Indices: 137975--138006 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
137965 AAAGCTTTTT
*
137975 TATGTGTATGTATATA
1 TATGTGTATATATATA
137991 TATGTGTATATATATA
1 TATGTGTATATATATA
138007 ATATAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (16 bp):
TATGTGTATATATATA
Found at i:138020 original size:19 final size:19
Alignment explanation
Indices: 137998--138034 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
137988 ATATATGTGT
*
137998 ATATATATAATATAATATA
1 ATATATATAATAAAATATA
*
138017 ATATATATTATAAAATAT
1 ATATATATAATAAAATAT
138035 TGTCTATGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
ATATATATAATAAAATATA
Found at i:141960 original size:3 final size:3
Alignment explanation
Indices: 141952--141996 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
141942 TTTTAGCACT
141952 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
141997 ATAGACATGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:142888 original size:105 final size:106
Alignment explanation
Indices: 142771--142963 Score: 361
Period size: 106 Copynumber: 1.8 Consensus size: 106
142761 TTATTAAAAT
*
142771 TAATTAATATTGTGCATGTATTATTACTTTTTATTTAT-AAATTATTTTTAATTTACTTATAAAT
1 TAATTAATATTGTGCATGTATTATTAATTTTTATTTATAAAATTATTTTTAATTTACTTATAAAT
142835 TATACAAATTTATTTTTATTAAAATTAGGGTAATTTATTTA
66 TATACAAATTTATTTTTATTAAAATTAGGGTAATTTATTTA
*
142876 TAATTAATATTGTGCATGTATTATTAATTTTTATTTATAAAATTATTTTTAATTTATTTATAAAT
1 TAATTAATATTGTGCATGTATTATTAATTTTTATTTATAAAATTATTTTTAATTTACTTATAAAT
142941 TATACAAATTTATTTTTATTAAA
66 TATACAAATTTATTTTTATTAAA
142964 TTATACAAAT
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
105 37 0.44
106 48 0.56
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (106 bp):
TAATTAATATTGTGCATGTATTATTAATTTTTATTTATAAAATTATTTTTAATTTACTTATAAAT
TATACAAATTTATTTTTATTAAAATTAGGGTAATTTATTTA
Found at i:142952 original size:21 final size:21
Alignment explanation
Indices: 142926--142982 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 21
142916 AATTATTTTT
142926 AATTTATTTATAAATTATACA
1 AATTTATTTATAAATTATACA
142947 AATTTATTTTTATTAAATTATACA
1 AATTTA--TTTA-TAAATTATACA
142971 AATTTATTTATA
1 AATTTATTTATA
142983 TTAGATCGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
21 8 0.24
22 4 0.12
23 4 0.12
24 17 0.52
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (21 bp):
AATTTATTTATAAATTATACA
Found at i:142968 original size:24 final size:24
Alignment explanation
Indices: 142932--142985 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
142922 TTTTAATTTA
142932 TTTA-TAAATTATACAAATTTATT
1 TTTATTAAATTATACAAATTTATT
142955 TTTATTAAATTATACAAATTTATT
1 TTTATTAAATTATACAAATTTATT
*
142979 TATATTA
1 TTTATTA
142986 GATCGTAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTATTAAATTATACAAATTTATT
Found at i:142968 original size:31 final size:30
Alignment explanation
Indices: 142910--142968 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
142900 TAATTTTTAT
* *
142910 TTATAAAATTATTTTTAATTTATTTATAAA
1 TTATAAAATTATTTTTAATTAAATTATAAA
142940 TTATACAAATTTATTTTT-ATTAAATTATA
1 TTATA-AAA-TTATTTTTAATTAAATTATA
142969 CAAATTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.20
31 12 0.48
32 8 0.32
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (30 bp):
TTATAAAATTATTTTTAATTAAATTATAAA
Found at i:142975 original size:105 final size:105
Alignment explanation
Indices: 142771--142982 Score: 354
Period size: 105 Copynumber: 2.0 Consensus size: 105
142761 TTATTAAAAT
*
142771 TAATTAATATTGTGCATGTATTATTACTTTTTATTTATAAATTATTTTTAATTTACTTATAAATT
1 TAATTAATATTGTGCATGTATTATTAATTTTTATTTATAAATTATTTTTAATTTACTTATAAATT
***
142836 ATACAAATTTATTTTTATTAAAATTAGGGTAATTTATTTA
66 ATACAAATTTATTTTTATTAAAATTAGACAAATTTATTTA
*
142876 TAATTAATATTGTGCATGTATTATTAATTTTTATTTATAAAATTATTTTTAATTTATTTATAAAT
1 TAATTAATATTGTGCATGTATTATTAATTTTTATTTAT-AAATTATTTTTAATTTACTTATAAAT
*
142941 TATACAAATTTATTTTTATT-AAATTATACAAATTTATTTA
65 TATACAAATTTATTTTTATTAAAATTAGACAAATTTATTTA
142981 TA
1 TA
142983 TTAGATCGTA
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
105 55 0.55
106 45 0.45
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (105 bp):
TAATTAATATTGTGCATGTATTATTAATTTTTATTTATAAATTATTTTTAATTTACTTATAAATT
ATACAAATTTATTTTTATTAAAATTAGACAAATTTATTTA
Found at i:143515 original size:92 final size:90
Alignment explanation
Indices: 143066--144088 Score: 973
Period size: 92 Copynumber: 11.3 Consensus size: 90
143056 AATAAATATG
* * * * * *
143066 ATTATATTTGAAAATCAGA--CTTTTTTATAGAAAAAGAAAAGTTGATTGATTGTAAATGCCAAA
1 ATTATATCTGAGAATCAGATTCTTTTTTATAAAAAAAGAAAAGTTGATTGATTATAAATGTCAGA
*
143129 CTGCAAAGATTAAACTAATGCATGA
66 CTGCAAAGATTAGACTAATGCATGA
* * * *
143154 ATTATATTTGAGAATCAGATTCTTTTTTATTAAATAAAAAAAAAAGTTGATTGATTGTAAATGTT
1 ATTATATCTGAGAATCAGATTCTTTTTTA-T-AA-AAAAAGAAAAGTTGATTGATTATAAATGTC
*
143219 AGACTGCAAGGATTAGACTAATGCATGA
63 AGACTGCAAAGATTAGACTAATGCATGA
* * * *
143247 ATTATATCTGAGAATTAGATT-ATTTTT-TACAAAAA-AAAAGTTGATTGATTATAAATGT-TGT
1 ATTATATCTGAGAATCAGATTCTTTTTTATAAAAAAAGAAAAGTTGATTGATTATAAATGTCAG-
* *
143308 ACTAC-AGGAATTAGACTAATGCATGA
65 ACTGCAAAG-ATTAGACTAATGCATGA
* * * * *
143334 ATTATATCTAAGAATCGGATTCTTTTTTAT--TAAAA-AAAAGTTGACTGATTATAAATGTCAAA
1 ATTATATCTGAGAATCAGATTCTTTTTTATAAAAAAAGAAAAGTTGATTGATTATAAATGTCAGA
* *
143396 CTACAAAGATTAGACTAATGCACGA
66 CTGCAAAGATTAGACTAATGCATGA
* * *
143421 ATTATATTTGAGAATCGGATTCTTTTTTATGACAAAAAAGAAAAGTTGATTGATTGTAAATGTCA
1 ATTATATCTGAGAATCAGATTCTTTTTTAT-A-AAAAAAGAAAAGTTGATTGATTATAAATGTCA
* * * *
143486 GACTGCGATGATTAGACTAGTACATGA
64 GACTGCAAAGATTAGACTAATGCATGA
* * * * * *
143513 ATTATATCTGAGAATCGGATTCTTTTTTGTAGAAAAAAGAAAAATTGATTAATTATAAATGTTAC
1 ATTATATCTGAGAATCAGATTCTTTTTTATA-AAAAAAGAAAAGTTGATTGATTATAAATGTCAG
* * * *
143578 ATTACAAGGATTAGACTAGTGCATGA
65 ACTGCAAAGATTAGACTAATGCATGA
* * * *
143604 ATTATATCTGAGAATCGGATTCTTTTTTATAGAAAAAA-AGAAAGTTAACTGATTGTAAATGTCA
1 ATTATATCTGAGAATCAGATTCTTTTTTATA-AAAAAAGA-AAAGTTGATTGATTATAAATGTCA
* *
143668 AACTGCAATGATTAGACTAATGCATGA
64 GACTGCAAAGATTAGACTAATGCATGA
* * * * * *
143695 ATTATATCTGAGAATCAGATTCTTTCTTAGATAAAAA-AAAA-TTGATTAATTATAAATATTAGA
1 ATTATATCTGAGAATCAGATTCTTTTTTATAAAAAAAGAAAAGTTGATTGATTATAAATGTCAGA
* *
143758 CTGCAACA-ATTAGACTAATGTATAA
66 CTGCAA-AGATTAGACTAATGCATGA
* * * *
143783 ATTATATCTGAGAATCAGATTCTTTTTTATAGAAAAAAAGAAAAGTTAACTAATTGTAAATGTCA
1 ATTATATCTGAGAATCAGATTCTTTTTTAT--AAAAAAAGAAAAGTTGATTGATTATAAATGTCA
**
143848 GACTATAAAGATTAGACTAATGCATGA
64 GACTGCAAAGATTAGACTAATGCATGA
* * * * * *
143875 ATTATATTTGAGAATCAGATTCTTTTTTATATAAAAAAAGGAAGGCTGATTGATTATAAATATTA
1 ATTATATCTGAGAATCAGATTC-TTTTT-TATAAAAAAAGAAAAGTTGATTGATTATAAATGTCA
* * * * *
143940 TACTGCAAGGATTGGACTAATACTTGA
64 GACTGCAAAGATTAGACTAATGCATGA
* * * *
143967 ATTGTA-CATGAGAATCGGATTTCTTTTGGTAAAAAAAAAAAAGAAAAGTTTG-TTGATTATAAG
1 ATTATATC-TGAGAATCAGA-TTCTTTT--T--TATAAAAAAAGAAAAG-TTGATTGATTATAA-
* * *
144030 A-ATCACACTGCAAAGATTAGACTAATGCATAA
58 ATGTCAGACTGCAAAGATTAGACTAATGCATGA
* * *
144062 ATTTTATTTGAGAATCAAATTCTTTTT
1 ATTATATCTGAGAATCAGATTCTTTTT
144089 GATACAAAGG
Statistics
Matches: 778, Mismatches: 124, Indels: 62
0.81 0.13 0.06
Matches are distributed among these distances:
86 4 0.01
87 136 0.17
88 94 0.12
89 5 0.01
90 22 0.03
91 165 0.21
92 198 0.25
93 79 0.10
94 11 0.01
95 61 0.08
96 3 0.00
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (90 bp):
ATTATATCTGAGAATCAGATTCTTTTTTATAAAAAAAGAAAAGTTGATTGATTATAAATGTCAGA
CTGCAAAGATTAGACTAATGCATGA
Found at i:147352 original size:12 final size:12
Alignment explanation
Indices: 147335--147361 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
147325 TAAAAATTAA
147335 AAATTCAAATTC
1 AAATTCAAATTC
147347 AAATTCAAATTC
1 AAATTCAAATTC
147359 AAA
1 AAA
147362 AAAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (12 bp):
AAATTCAAATTC
Found at i:147552 original size:50 final size:49
Alignment explanation
Indices: 147490--147652 Score: 272
Period size: 50 Copynumber: 3.3 Consensus size: 49
147480 AATAGAAAAT
147490 GCATGCATGGGAAAGCATAAAGATTGCAATTGGAGACAAAACATGCAGAG
1 GCATGCATGGGAAAGCATAAA-ATTGCAATTGGAGACAAAACATGCAGAG
* * *
147540 GCATGCATGGGAAAACACAAAATTGCAATTGGAGACAAAACATGCGGAG
1 GCATGCATGGGAAAGCATAAAATTGCAATTGGAGACAAAACATGCAGAG
147589 GCATGCATGGGAAAGCATAAAAATTGCAATTGGAGACAAAACATGCAGAG
1 GCATGCATGGGAAAGCAT-AAAATTGCAATTGGAGACAAAACATGCAGAG
*
147639 ACATGCATGGGAAA
1 GCATGCATGGGAAA
147653 TGAAAAAAGC
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
49 43 0.41
50 62 0.59
ACGTcount: A:0.43, C:0.15, G:0.27, T:0.15
Consensus pattern (49 bp):
GCATGCATGGGAAAGCATAAAATTGCAATTGGAGACAAAACATGCAGAG
Found at i:148055 original size:27 final size:26
Alignment explanation
Indices: 147976--148062 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 26
147966 TCAGCAAAGA
*
147976 AGCAGCAATCATCGAAACAAGG-AGAAAC
1 AGCAGCAAGCATC--AACAAGGAAG-AAC
* *
148004 AGTAGC-AGCATCGACAA-GAAG-AC
1 AGCAGCAAGCATCAACAAGGAAGAAC
148027 AGCAGCAAGCATCAACGAAGGAAGAAC
1 AGCAGCAAGCATCAAC-AAGGAAGAAC
148054 AGCGAGCAA
1 AGC-AGCAA
148063 AGAGGAAAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
23 7 0.15
24 9 0.19
25 8 0.17
26 4 0.08
27 10 0.21
28 10 0.21
ACGTcount: A:0.47, C:0.22, G:0.25, T:0.06
Consensus pattern (26 bp):
AGCAGCAAGCATCAACAAGGAAGAAC
Found at i:149308 original size:53 final size:51
Alignment explanation
Indices: 149200--149325 Score: 143
Period size: 53 Copynumber: 2.5 Consensus size: 51
149190 AATTGCTCGT
*
149200 AATCG-GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTTT
1 AATCGAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTT-CTTC
* **
149251 AATCGAAGGGATACTCCAACCCCGGTTTTA-TTTCTAAAATATTAATTT-TTCAC
1 AATCG-AGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCTT--C
149304 AATCGAGGG-TACTCCAACCCCG
1 AATCGAGGGATACTCCAACCCCG
149326 TTATTTTCGA
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
51 20 0.30
52 8 0.12
53 38 0.58
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
AATCGAGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCTTC
Found at i:149395 original size:78 final size:79
Alignment explanation
Indices: 149258--149550 Score: 450
Period size: 78 Copynumber: 3.7 Consensus size: 79
149248 TTTAATCGAA
* *
149258 GGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCACAATCGAGGG-TACTCCAAC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCG-GGGATACTCCAAC
*
149322 CCCGTTATTTTCGAG
65 CCCGTTATTTCCGAG
* * * *
149337 GGGATACTCCAA-CCCGGTTCTATCTCTAAAATATTAATTTTTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCCAACC
149401 CCGTTATTTCCGA-
66 CCGTTATTTCCGAG
* *
149414 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCCAACC
149479 CCGTTATTTCCGAG
66 CCGTTATTTCCGAG
* *
149493 GGGATACTCCAACCTCGGTTTTATTTCTAAAACATCAA-TTTTCATAATCGGGGATACT
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACT
149551 TTAATCCCGA
Statistics
Matches: 200, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
77 15 0.08
78 137 0.69
79 48 0.24
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCCAACC
CCGTTATTTCCGAG
Done.