genome.fa.s963.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold963
Parameters: 2 7 7 80 10 50 1000
Length:  40624

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3613--3698	20	4.7	20	71	21	80	29	13	12	44	1.81
3652--3746	19	5.2	19	68	26	71	29	14	14	41	1.86
3613--3729	52	2.2	52	96	0	216	29	13	13	43	1.83
3695--3749	19	2.8	19	88	2	74	30	16	12	40	1.86
3613--3749	52	2.6	52	91	4	206	29	14	13	42	1.84
3665--3988	165	2.0	167	94	1	571	33	15	16	34	1.91
3944--4008	33	2.0	33	84	6	87	36	12	18	32	1.88
7425--7468	17	2.7	15	80	19	52	36	0	2	61	1.09
14435--14553	42	2.8	42	92	0	193	8	46	2	42	1.47
14468--14543	12	6.9	11	75	15	52	9	48	2	39	1.49
14459--14544	24	3.8	24	72	17	85	10	45	2	41	1.51
14450--14520	18	3.6	18	69	20	52	9	43	2	43	1.52
19926--20005	30	2.7	30	92	3	126	8	45	3	42	1.53
19951--19990	21	1.9	21	89	0	62	10	42	2	45	1.51
23851--23926	12	6.9	11	75	15	52	39	2	48	9	1.49
23850--23935	24	3.8	24	72	17	85	41	2	45	10	1.51
23841--23959	42	2.8	42	92	0	193	42	2	46	8	1.47
29420--29480	9	7.1	9	72	10	56	11	45	0	42	1.40
29425--29501	12	6.9	12	70	26	62	11	46	0	41	1.40
29396--29510	42	2.7	42	89	0	158	10	43	0	45	1.44
29440--29501	21	3.0	21	73	17	65	12	45	0	41	1.42
31566--31613	18	2.9	16	78	9	51	8	4	8	79	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31568--31607	18	2.3	17	86	4	53	7	2	5	85	0.83
32725--32768	12	3.7	12	90	6	63	38	0	47	13	1.43
32734--32782	12	4.2	12	82	12	57	42	0	42	14	1.45
35771--35804	16	2.1	16	88	0	50	14	14	26	44	1.84
36055--36263	32	6.5	32	81	2	123	24	15	24	34	1.95
36116--36290	64	2.7	64	76	0	188	25	16	24	33	1.96
36116--36288	32	5.4	32	82	0	157	26	16	24	32	1.96
36314--36389	36	2.1	36	87	2	109	40	13	22	23	1.89
36573--36614	20	2.1	20	86	8	59	40	11	23	23	1.88

Tables:   1

The End!