genome.fa.s964.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold964
Parameters: 2 7 7 80 10 50 1000
Length:  114058

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--34543	634	53.9	633	79	7	30956	32	18	15	34	1.91
3--19847	316	62.7	317	87	2	27014	32	17	14	35	1.91
23103--34543	317	36.0	317	83	3	12863	31	17	15	35	1.91
30218--30321	51	2.0	51	100	0	208	27	20	23	28	1.99
36169--36244	12	6.9	11	75	15	52	39	2	48	9	1.49
36168--36253	24	3.8	24	72	17	85	41	2	45	10	1.51
36159--36277	42	2.8	42	90	0	184	42	3	45	8	1.51
41357--77906	159	231.1	156	66	15	14463	31	17	15	35	1.91
42005--57045	317	47.6	316	83	5	12341	31	17	15	35	1.91
57006--75928	317	59.7	317	83	4	18271	31	17	15	35	1.91
75872--77906	317	6.5	315	86	3	2699	31	17	15	35	1.91
69858--77906	634	12.7	633	78	9	5284	31	17	15	35	1.91
79531--79606	12	6.9	11	75	15	52	39	2	48	9	1.49
79530--79615	24	3.8	24	72	17	85	41	2	45	10	1.51
79521--79639	42	2.8	42	92	0	193	42	2	46	8	1.47
84638--86112	317	4.7	317	84	3	1893	32	17	15	35	1.91
84617--87540	159	18.5	158	68	13	1541	31	17	15	35	1.91
86090--87608	317	4.8	317	89	1	2114	31	16	15	35	1.91
88357--88382	13	2.0	13	100	0	52	30	15	15	38	1.88
89088--89131	21	2.1	21	83	8	54	25	31	4	38	1.76
90771--90817	21	2.3	21	82	10	62	44	4	19	31	1.70
90938--90963	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93046--93076	15	2.1	15	93	0	53	12	22	16	48	1.80
94786--94865	30	2.7	30	92	3	126	42	3	45	8	1.53
94801--94840	21	1.9	21	89	0	62	45	2	42	10	1.51
100023--100067	21	2.1	21	100	0	90	60	22	0	17	1.37
103451--104240	159	5.0	156	69	12	561	32	17	14	35	1.90
104273--104319	21	2.4	19	89	10	69	29	17	2	51	1.57
104325--106859	317	8.0	317	87	1	3639	31	17	14	35	1.91
104325--106859	635	4.0	635	89	1	3765	31	17	14	35	1.91
107238--107289	21	2.6	20	93	6	88	46	15	11	26	1.80
113437--113474	13	2.9	13	96	0	67	34	15	15	34	1.90
113585--113630	21	2.2	20	81	11	58	32	19	4	43	1.71

Tables:   1

The End!