genome.fa.s965.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold965
Parameters: 2 7 7 80 10 50 1000
Length:  131858

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3117--3241	62	2.0	62	93	0	214	29	13	23	33	1.93
4393--4443	17	2.7	19	91	8	79	37	11	13	37	1.82
5168--5239	20	3.6	20	73	0	63	34	15	9	40	1.80
18915--18968	1	54.0	1	77	0	54	88	7	3	0	0.61
20198--21373	28	40.9	29	87	4	1502	28	31	17	22	1.97
20197--21358	229	5.1	226	87	4	1607	28	32	17	22	1.97
21892--21966	20	3.8	20	74	0	78	34	14	12	38	1.83
35015--35078	27	2.3	29	78	10	71	53	4	4	37	1.43
39995--40115	52	2.3	52	97	0	224	28	18	18	34	1.94
39995--40135	52	2.7	51	90	4	212	30	17	18	33	1.94
40124--40148	13	1.9	13	100	0	50	36	16	16	32	1.90
40214--40238	13	1.9	13	100	0	50	32	16	16	36	1.90
40192--40258	33	2.0	33	88	0	98	40	13	11	34	1.81
43027--43069	19	2.1	22	87	12	65	34	16	0	48	1.46
47691--47717	13	2.1	13	100	0	54	40	14	14	29	1.86
47750--47802	20	2.7	20	84	0	70	32	15	11	41	1.82
47801--47853	20	2.7	20	82	14	65	32	11	13	43	1.79
49955--49996	22	2.0	21	90	4	66	66	7	0	26	1.17
56360--56451	21	4.6	20	69	22	68	53	0	0	46	1.00
56375--56449	25	3.2	25	66	21	63	53	0	0	46	1.00
56410--56457	18	2.7	18	78	15	55	54	0	0	45	0.99
56408--56467	11	5.2	11	77	16	50	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56614--56660	14	3.3	14	80	19	53	70	0	0	29	0.88
56605--56658	23	2.3	24	87	3	74	64	0	0	35	0.94
56645--56701	27	2.1	27	90	6	89	54	0	5	40	1.23
57179--57240	26	2.4	25	81	8	61	41	1	1	54	1.19
57213--57250	20	1.9	20	88	0	58	47	0	0	52	1.00
57508--57563	27	2.1	26	83	9	69	44	1	0	53	1.11
58889--58931	21	2.0	22	86	13	63	37	0	20	41	1.53
59953--59977	2	12.5	2	100	0	50	48	0	0	52	1.00
60181--60220	18	2.2	18	86	8	55	47	2	10	40	1.50
64641--64822	97	1.9	97	96	0	337	23	9	19	48	1.77
66414--66457	20	2.1	22	87	8	65	43	0	0	56	0.99
72325--72353	2	14.5	2	100	0	58	48	0	0	51	1.00
73225--73278	28	1.9	28	92	7	92	53	0	27	18	1.45
74172--74241	2	34.0	2	77	5	59	45	5	4	44	1.47
79725--79771	13	3.7	13	80	5	51	55	0	2	42	1.12
93885--93938	20	2.7	20	82	2	63	33	14	12	38	1.85
94575--95308	61	12.8	61	72	13	232	37	14	24	24	1.92
94697--94959	52	5.1	52	80	2	269	38	14	22	25	1.91
94534--95417	172	5.2	166	71	13	492	36	14	23	24	1.93
94913--95421	233	2.2	231	85	2	653	36	14	24	24	1.93
95193--95417	113	2.0	111	82	3	272	36	15	23	24	1.93
95410--95704	32	9.2	33	81	7	274	18	17	33	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95714--95758	20	2.2	20	92	0	72	35	13	8	42	1.75
97283--97559	57	4.8	57	82	4	288	48	17	8	24	1.75
97360--97617	117	2.2	114	82	4	304	50	18	8	23	1.74
97339--97708	58	6.4	58	76	7	205	49	16	8	25	1.74
99566--99688	57	2.2	57	97	2	230	30	4	24	40	1.76
100348--100400	20	2.6	21	87	3	72	39	13	16	30	1.87
100450--100475	13	2.0	13	100	0	52	38	15	15	30	1.88
100432--100495	32	2.0	33	87	9	96	40	15	15	28	1.88
100432--100495	33	2.0	32	87	9	94	40	15	15	28	1.88
110032--110827	330	2.4	329	76	9	721	29	11	9	49	1.70
114456--115014	158	3.6	158	80	3	605	28	22	11	37	1.89
114456--115014	79	7.2	78	81	3	538	28	22	11	37	1.89
117147--117552	166	2.5	164	80	4	440	32	10	8	48	1.68
118996--119039	16	2.8	16	76	10	54	68	0	0	31	0.90
121410--121847	156	2.8	155	82	3	484	25	15	19	39	1.91
121440--121848	159	2.6	155	82	2	460	25	16	20	38	1.92

Tables:   1

The End!