Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold966
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28760
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34
Found at i:8554 original size:155 final size:152
Alignment explanation
Indices: 8310--8742 Score: 506
Period size: 155 Copynumber: 2.9 Consensus size: 152
8300 ATAAAAAGCA
* *
8310 ACAACCTAAGACTCGATTCTAAAAATTACGAAAATGCCC-TAGAGGGTACCTTTGACATAGAAGT
1 ACAACCTAAGACTCGATTATAAAAATTACGAAAATGCCCTTA-AGGGTACCTTTGACGTA-AAGT
** * * * *
8374 GCTTAATACCCTTAAAAGACTTTAAAAGGATTATAGATGGGATGAACCTATCCTAAATACCTACC
64 GCTCGATACCCTTAAAGGACTTTAAAAGGATTATAGATAGGATGAAACTATCCTAAATACCCACC
8439 TTCCACATAAAAGC-GAACTCGGTG
129 TTCCACATAAAAGCAG-ACTCGGTG
** * * *
8463 ACGGCTTAGGACTCGATTATAAAAAATTATGAAAATGCCCTTAAGGGATACCTTTGACGTAAAAG
1 ACAACCTAAGACTCGATTAT-AAAAATTACGAAAATGCCCTTAAGGG-TACCTTTGACGT-AAAG
*
8528 TGGC-CGATACCCGTAAAGGACTTTAAAAGGATTATAGATAGGATGAAACTATCCTAAATACCCA
63 T-GCTCGATACCCTTAAAGGACTTTAAAAGGATTATAGATAGGATGAAACTATCCTAAATACCCA
* *
8592 CTTTCGACATAAAAGCAGACTCGGTG
127 CCTTCCACATAAAAGCAGACTCGGTG
* * * * * * *
8618 ATAACCTAAGACTCAATTTTGAAAAATTACAAAAATACCATTAAAGGTACC-TT--CG--AAGTG
1 ACAACCTAAGACTCGATTAT-AAAAATTACGAAAATGCCCTTAAGGGTACCTTTGACGTAAAGTG
* *
8678 CTCGATACCCTTAAAGAACTTAAAAAGGATTATAGATAGGATGAAACTAT-CTAAATACCCACCT
65 CTCGATACCCTTAAAGGACTTTAAAAGGATTATAGATAGGATGAAACTATCCTAAATACCCACCT
8742 T
130 T
8743 TGGCATAAAA
Statistics
Matches: 240, Mismatches: 33, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
147 16 0.07
148 49 0.20
151 2 0.01
153 17 0.07
154 26 0.11
155 126 0.52
156 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (152 bp):
ACAACCTAAGACTCGATTATAAAAATTACGAAAATGCCCTTAAGGGTACCTTTGACGTAAAGTGC
TCGATACCCTTAAAGGACTTTAAAAGGATTATAGATAGGATGAAACTATCCTAAATACCCACCTT
CCACATAAAAGCAGACTCGGTG
Found at i:8832 original size:110 final size:110
Alignment explanation
Indices: 8639--8864 Score: 443
Period size: 110 Copynumber: 2.1 Consensus size: 110
8629 CTCAATTTTG
8639 AAAAATTACAAAAATACCATTAAAGGTACCTTCGAAGTGCTCGATACCCTTAAAGAACTTAAAAA
1 AAAAATTACAAAAATACCATTAAAGGTACCTTCGAAGTGCTCGATACCCTTAAAGAACTTAAAAA
8704 GGATTATAGATAGGATGAAACTATCTAAATACCCACCTTTGGCAT
66 GGATTATAGATAGGATGAAACTATCTAAATACCCACCTTTGGCAT
*
8749 AAAAATTACAAAAATACCATTAAAGGTACCTTTGAAGTGCTCGATACCCTTAAAGAACTTAAAAA
1 AAAAATTACAAAAATACCATTAAAGGTACCTTCGAAGTGCTCGATACCCTTAAAGAACTTAAAAA
8814 GGATTATAGATAGGATGAAACTATCTAAATACCCACCTTTGGCAT
66 GGATTATAGATAGGATGAAACTATCTAAATACCCACCTTTGGCAT
8859 AAAAAT
1 AAAAAT
8865 GAACCTAGTG
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 115 1.00
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (110 bp):
AAAAATTACAAAAATACCATTAAAGGTACCTTCGAAGTGCTCGATACCCTTAAAGAACTTAAAAA
GGATTATAGATAGGATGAAACTATCTAAATACCCACCTTTGGCAT
Found at i:9630 original size:9 final size:9
Alignment explanation
Indices: 9611--9644 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
9601 GGAAATTTTC
9611 ATTATAACAT
1 ATTA-AACAT
9621 ATTAAACAT
1 ATTAAACAT
9630 ATTAAACAT
1 ATTAAACAT
9639 ATTAAA
1 ATTAAA
9645 TAGATATCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 20 0.83
10 4 0.17
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTAAACAT
Found at i:10427 original size:20 final size:21
Alignment explanation
Indices: 10390--10431 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
10380 AAAAATTGAT
*
10390 TTTTTTTCTTAGTGTTTTTATA
1 TTTTTTTCTTA-TCTTTTTATA
10412 TTTTTTTCTT-TCTTTTTATA
1 TTTTTTTCTTATCTTTTTATA
10432 GATGGAAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
22 10 0.53
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.76
Consensus pattern (21 bp):
TTTTTTTCTTATCTTTTTATA
Found at i:10734 original size:14 final size:13
Alignment explanation
Indices: 10705--10763 Score: 57
Period size: 14 Copynumber: 4.4 Consensus size: 13
10695 AGATATTTAT
10705 ATTAATTCGT-AAA
1 ATTAATT-GTAAAA
10718 ATTATATTGTAAAA
1 ATTA-ATTGTAAAA
* **
10732 ATTAATTATAAGG
1 ATTAATTGTAAAA
10745 ATTAAATTGTAAAA
1 ATT-AATTGTAAAA
10759 ATTAA
1 ATTAA
10764 AAAGTATGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
13 17 0.46
14 20 0.54
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (13 bp):
ATTAATTGTAAAA
Found at i:11274 original size:16 final size:16
Alignment explanation
Indices: 11253--11286 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
11243 GTAAACAAAT
11253 AAATTATACAAACAAG
1 AAATTATACAAACAAG
11269 AAATTATACAAACAAG
1 AAATTATACAAACAAG
11285 AA
1 AA
11287 TTGCCTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (16 bp):
AAATTATACAAACAAG
Found at i:12408 original size:163 final size:161
Alignment explanation
Indices: 12051--12654 Score: 501
Period size: 164 Copynumber: 3.7 Consensus size: 161
12041 AAATAAATGT
* * * ** * *
12051 AATTTTCTC-AAACTGATTTAATGTCAATTTAATGACAATATTTGATAAATTTTAAAAATTTTAA
1 AATTTT-TCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAA
*** * * * * * * *
12115 ATTGAGAAAAATCCCTCCAAAAATATTTATGGAATAGAAAACTCAATTTTTTAGAAAC-ATGAGA
65 ACCAAGAAAAATCCC-CCAAAAACATTTACGGAGTAGAAAACTCCATATTTT-GGAACTAAGAGA
* * *
12179 ATTTCAAAGAAAAATGAAAAACATGTGAACATAAAT
128 ATTTCAAA-AAAAATGAAAATCATGAGAACA-AAAG
* * *
12215 AATTTTTTCAAAACTGATTTACTATGAATTAAATGATTATATTTGATGAATTTTAAAAATTACAA
1 AA-TTTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAA
* * *
12280 A-CAAAAAAAATCCACCAAAAAACATTTACGGAGTAGAAAACTCCATATTTTGGAACTAGGAGAA
65 ACCAAGAAAAATCC-CCCAAAAACATTTACGGAGTAGAAAACTCCATATTTTGGAACTAAGAGAA
*
12344 TTTCAAAAAAAATGAACAATGCATGAGATA-AAAGG
129 TTTCAAAAAAAATGAA-AAT-CATGAGA-ACAAAAG
* ** *
12379 AATTTTTCAAAACTAATTTAATATGAATTATGTGATGATATTTGATGCATTTTAAAAATTATAAA
1 AATTTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAAA
** * * ** * *
12444 CCAAGAAAAATCTCCCCGCAAATATTTACGGAGTATAAAACTCTGTATTTTGGAAATAAGAAAAT
66 CCAAGAAAAATC-CCCCAAAAACATTTACGGAGTAGAAAACTCCATATTTTGGAACTAAGAGAA-
* * * * *
12509 TTTAAAGAAAAAAAATGAAAAACTCAAGAAAATAAATG
129 TTT---CAAAAAAAATG-AAAA-TCATGAGAACAAAAG
*
12547 AATTTTTCAAAACTGATTTAATA-G------ATGATGATATTAGATGAATTTTAAAAATTATAAA
1 AATTTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAAA
* * * ** * *
12605 CTAAGAAAAATCCACCTACAAACATTTACATAGTGGAAAACTCCGTATTT
66 CCAAGAAAAATCC-CCCAAAAACATTTACGGAGTAGAAAACTCCATATTT
12655 CGATAATAGA
Statistics
Matches: 364, Mismatches: 59, Indels: 37
0.79 0.13 0.08
Matches are distributed among these distances:
160 1 0.00
161 70 0.19
163 69 0.19
164 112 0.31
165 63 0.17
166 1 0.00
167 2 0.01
168 43 0.12
169 3 0.01
ACGTcount: A:0.47, C:0.10, G:0.11, T:0.31
Consensus pattern (161 bp):
AATTTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAAA
CCAAGAAAAATCCCCCAAAAACATTTACGGAGTAGAAAACTCCATATTTTGGAACTAAGAGAATT
TCAAAAAAAATGAAAATCATGAGAACAAAAG
Found at i:12682 original size:161 final size:160
Alignment explanation
Indices: 12246--12683 Score: 442
Period size: 161 Copynumber: 2.7 Consensus size: 160
12236 CTATGAATTA
* * * *
12246 AATGATTATATTTGATGAATTTTAAAAATTACAAACAAAAAAAATCCACCAAAAAACATTTACGG
1 AATGATGATATTTGATGAATTTTAAAAATTATAAACAAGAAAAATCCACCAACAAACATTTACGG
* * * * * * * *
12311 AGTAGAAAACTCCATATTTTGGAACTAGGAGAATTT--CAAAAAAAATGAACAATGCATGAGATA
66 AGTAGAAAACTCCGTATTTTGGAAATAGAAAAATTTAAGAAAAAAAATGAAAAATGCAAGAAATA
12374 AAAGGAATTTTTCAAAACTAATTTAATATG
131 AAAGGAATTTTTCAAAACTAATTTAATATG
* ** *
12404 AATTATGTGATGATATTTGATGCATTTTAAAAATTATAAACCAAGAAAAATCTC-CCCGCAAATA
1 -A--A--TGATGATATTTGATGAATTTTAAAAATTATAAA-CAAGAAAAATC-CACCAACAAACA
* * *
12468 TTTACGGAGTATAAAACTCTGTATTTTGGAAATAAGAAAATTTTAAAGAAAAAAAATGAAAAACT
59 TTTACGGAGTAGAAAACTCCGTATTTTGGAAAT-AGAAAAATTT-AAGAAAAAAAATGAAAAA-T
* *
12533 -CAAGAAA-ATAAATGAATTTTTCAAAACTGATTTAATA-G
121 GCAAGAAATA-AAAGGAATTTTTCAAAACTAATTTAATATG
* * *
12571 -ATGATGATATTAGATGAATTTTAAAAATTATAAACTAAGAAAAATCCACCTACAAACATTTACA
1 AATGATGATATTTGATGAATTTTAAAAATTATAAAC-AAGAAAAATCCACCAACAAACATTTACG
* * * *
12635 TAGTGGAAAACTCCGTA-TTTCGATAATAGAAAAAGTTTAAGGAAAAAAA
65 GAGTAGAAAACTCCGTATTTTGGA-AATAGAAAAA-TTTAAGAAAAAAAA
12684 CTCATGAAAA
Statistics
Matches: 229, Mismatches: 34, Indels: 31
0.78 0.12 0.11
Matches are distributed among these distances:
159 1 0.00
160 23 0.10
161 73 0.32
163 31 0.14
164 45 0.20
165 8 0.03
167 2 0.01
168 45 0.20
169 1 0.00
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (160 bp):
AATGATGATATTTGATGAATTTTAAAAATTATAAACAAGAAAAATCCACCAACAAACATTTACGG
AGTAGAAAACTCCGTATTTTGGAAATAGAAAAATTTAAGAAAAAAAATGAAAAATGCAAGAAATA
AAAGGAATTTTTCAAAACTAATTTAATATG
Found at i:16916 original size:167 final size:165
Alignment explanation
Indices: 16743--17410 Score: 443
Period size: 164 Copynumber: 4.0 Consensus size: 165
16733 CAATATTATT
* *
16743 TGAATTTAAAAAATTTTAAACCGAGAAAAATCCCCTCGAAAATATTTATAGAATAGAAAACTCAG
1 TGAATTT-AAAAATTTAAAACCGAGAAAAATCCCCTCGAAAA-ATTTACAGAATAGAAAACTCAG
* *** * **
16808 TTTTTTGGAAACATGAAAATTTCAA-AGAAAAAAATTTAAAACTCAAGAAAATAAACGAA-TTTT
64 TATTTCAAAAACAGGAAAATTTCAAGA-AAAAAAATGAAAAACTCAAGAAAATAAA-GAACTTTT
16871 TGAAAACTGATTTAATATGAAAT-AAATAATAATATTTGA
127 TGAAAACTGATTTAATATG-AATCAAATAATAATATTTGA
* * * * * **
16910 TGAATTTTAAAAATTAAAAACC-AGGAAAAATGCCCTCGAAAAAATTACCGAGTAGAAAACTTTG
1 TGAA-TTTAAAAATTTAAAACCGA-GAAAAATCCCCTCGAAAAATTTACAGAATAGAAAACTCAG
* * * * *
16974 TATTTCAAAAATAGGAAAATTTCATGAAAAAAAATGAAAAACTCATGAAAATGAATAACTTTTTG
64 TATTTCAAAAACAGGAAAATTTCAAGAAAAAAAATGAAAAACTCAAGAAAATAAAGAACTTTTTG
* * *
17039 AAAACTGATTTAATATGAATCAAATGATGATGTTTGA
129 AAAACTGATTTAATATGAATCAAATAATAATATTTGA
* * * ** * *
17076 TGAATTT--TAATTTGAAAACCGAGAAAAATCCCTTCGAGAAAATTTACGGTGTAGAAAACACCG
1 TGAATTTAAAAATTT-AAAACCGAGAAAAATCCCCTCGA-AAAATTTACAGAATAGAAAACTCAG
* * * * * * * *
17139 TATTTCAAAAATATAGG--AGTTTTAAG-AAAACAATTAAAAATTCATGAAAATGAATGAA-TTT
64 TATTTC-AAAA-ACAGGAAAATTTCAAGAAAAAAAATGAAAAACTCAAGAAAAT-AAAGAACTTT
* * * * * * *
17200 TTAAAAACTAAATTATTATGAAACAAATAATGATGTTTGA
126 TTGAAAACTGATTTAATATGAATCAAATAATAATATTTGA
* ** * * ** * * *
17240 TGAATTTTAAAAATTGAAAACCTCG-AAAATCTCTTAAAAAAAAATTACA-AAGTAGAAAACACC
1 TGAA-TTTAAAAATTTAAAACCGAGAAAAATCCCCT-CGAAAAATTTACAGAA-TAGAAAACTCA
* * * * * *
17303 G-GTTTCGAAAAA-AAGAGAATTTCAAG-AAAAAAATTAAAAACTCATGAAAATAAAAGAA-TTG
63 GTATTTC-AAAAACAGGAAAATTTCAAGAAAAAAAATGAAAAACTCAAGAAAAT-AAAGAACTTT
* * * * *
17364 TTCAAAATTGATTTGATA-GAGATTAAATGATAATATTTGA
126 TTGAAAACTGATTTAATATGA-ATCAAATAATAATATTTGA
*
17404 AGAATTT
1 TGAATTT
17411 TGGTGTTTCA
Statistics
Matches: 400, Mismatches: 82, Indels: 42
0.76 0.16 0.08
Matches are distributed among these distances:
162 2 0.00
163 10 0.03
164 156 0.39
165 75 0.19
166 111 0.28
167 43 0.11
168 3 0.01
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (165 bp):
TGAATTTAAAAATTTAAAACCGAGAAAAATCCCCTCGAAAAATTTACAGAATAGAAAACTCAGTA
TTTCAAAAACAGGAAAATTTCAAGAAAAAAAATGAAAAACTCAAGAAAATAAAGAACTTTTTGAA
AACTGATTTAATATGAATCAAATAATAATATTTGA
Found at i:17005 original size:21 final size:21
Alignment explanation
Indices: 16980--17024 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
16970 TTTGTATTTC
* **
16980 AAAAATAGGAAAATTTCATGA
1 AAAAAAAGGAAAAACTCATGA
*
17001 AAAAAAATGAAAAACTCATGA
1 AAAAAAAGGAAAAACTCATGA
17022 AAA
1 AAA
17025 TGAATAACTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.07, G:0.11, T:0.18
Consensus pattern (21 bp):
AAAAAAAGGAAAAACTCATGA
Found at i:17235 original size:164 final size:162
Alignment explanation
Indices: 16825--17377 Score: 562
Period size: 164 Copynumber: 3.4 Consensus size: 162
16815 GAAACATGAA
* * *
16825 AATTTCAAAGAAAAAAATTTAAAACTCAAGAAAATAAACGAATTTTTGAAAACTGATTTAATATG
1 AATTTC-AAGAAAAAAATTAAAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATATG
* * * *
16890 AAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAGGAAAAATGCCC-TCGAAAAAA
65 AAACAAATAATGATGTTTGATGAATTTT-AAAATTGAAAACCA-GAAAAAT-CCCTTCGAAAAAA
* ***
16954 TTACCGAGTAGAAAACTTTGTATTTC-AAAAATAGG
127 TTACAGAGTAGAAAACACCGTATTTCAAAAAATAGG
* * *
16989 AAAATTTCATGAAAAAAAATGAAAAACTCATGAAAATGAAT-AACTTTTTGAAAACTGATTTAAT
1 --AATTTCAAG-AAAAAAATTAAAAACTCATGAAAATAAATGAA-TTTTTGAAAACTGATTTAAT
* * *
17053 ATGAATCAAATGATGATGTTTGATGAATTTT-AATTTGAAAACCGAGAAAAATCCCTTCGAGAAA
62 ATGAAACAAATAATGATGTTTGATGAATTTTAAAATTGAAAACC-AGAAAAATCCCTTCGA-AAA
* * *
17117 ATTTACGGTGTAGAAAACACCGTATTTCAAAAATATAGG
125 AATTACAGAGTAGAAAACACCGTATTTCAAAAA-ATAGG
* * * * * * * * *
17156 AGTTTTAAGAAAACAATTAAAAATTCATGAAAATGAATGAATTTTTAAAAACTAAATTATTATGA
1 AATTTCAAGAAAAAAATTAAAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGA
* * **
17221 AACAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACCTCG-AAAATCTCTTAAAAAAAAAT
66 AACAAATAATGATGTTTGATGAATTTT-AAAATTGAAAACC-AGAAAAATCCCTT-CGAAAAAAT
* *
17285 TACAAAGTAGAAAACACCG-GTTTCGAAAAAA-AGAG
128 TACAGAGTAGAAAACACCGTATTTC-AAAAAATAG-G
* * * *
17320 AATTTCAAGAAAAAAATTAAAAACTCATGAAAATAAAAGAATTGTTCAAAATTGATTT
1 AATTTCAAGAAAAAAATTAAAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTT
17378 GATAGAGATT
Statistics
Matches: 321, Mismatches: 53, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
163 5 0.02
164 145 0.45
165 73 0.23
166 93 0.29
167 5 0.02
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (162 bp):
AATTTCAAGAAAAAAATTAAAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGA
AACAAATAATGATGTTTGATGAATTTTAAAATTGAAAACCAGAAAAATCCCTTCGAAAAAATTAC
AGAGTAGAAAACACCGTATTTCAAAAAATAGG
Found at i:22091 original size:118 final size:119
Alignment explanation
Indices: 21868--22105 Score: 302
Period size: 118 Copynumber: 2.0 Consensus size: 119
21858 ATTAAGTAGG
* *
21868 AAATTATAATAACAAAGCTCTAGCCTTTGGCCAAGTGATTAGAACAGAAGAGATGGCCTCAATTT
1 AAATTATAACAACAAAGCTCCAGCCTTTGGCCAAGTGATTAGAACAGAAGAGATGGCCTCAATTT
* * * *
21933 TTCTTTTTTCCTTGTTGTTATTTACCAAGAAAAGAAAG-AAAAAAGGTTTCTGT
66 TTCTCTTTTCCTTATTGTTAATTACCAAGAAAAAAAAGAAAAAAAGGTTTCTGT
* * * * * * *
21986 AAATTATACCAACAAAGCTCCAGCTTTTGGCTAAGTTATTAGAGCAGCAA-AGATGGCTTGAATT
1 AAATTATAACAACAAAGCTCCAGCCTTTGGCCAAGTGATTAGAACAG-AAGAGATGGCCTCAATT
*
22050 TTTCTCTTTTCCTTATTGTTAATTAGCAA-AAAAAAAGAGAAAAAAAAGGTTTCTGT
65 TTTCTCTTTTCCTTATTGTTAATTACCAAGAAAAAAA-AG-AAAAAAAGGTTTCTGT
22106 TCTGGTATGG
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
117 6 0.06
118 79 0.77
119 2 0.02
120 15 0.15
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (119 bp):
AAATTATAACAACAAAGCTCCAGCCTTTGGCCAAGTGATTAGAACAGAAGAGATGGCCTCAATTT
TTCTCTTTTCCTTATTGTTAATTACCAAGAAAAAAAAGAAAAAAAGGTTTCTGT
Done.