Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold97
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 856079
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 25 characters in sequence are not A, C, G, or T
File 4 of 5
Found at i:561107 original size:20 final size:20
Alignment explanation
Indices: 561082--561153 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
561072 ACTCTAGAAA
561082 GTATCGATACA-CATTCAGAT
1 GTATCGATACATCATTCA-AT
* *
561102 GTATCGATACATTATTCATT
1 GTATCGATACATCATTCAAT
*
561122 GTATCGATACAT-ACTCAATT
1 GTATCGATACATCATTCAA-T
*
561142 GTATTGATACAT
1 GTATCGATACAT
561154 GAAACTGGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
19 4 0.09
20 36 0.80
21 5 0.11
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (20 bp):
GTATCGATACATCATTCAAT
Found at i:561222 original size:13 final size:13
Alignment explanation
Indices: 561204--561228 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
561194 CATGGCACAT
561204 TGTATCGATACAG
1 TGTATCGATACAG
561217 TGTATCGATACA
1 TGTATCGATACA
561229 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:561226 original size:33 final size:32
Alignment explanation
Indices: 561184--561248 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
561174 TATCACTGTT
561184 TGTATCGATACATG-GCACATTGTATCGATACAG
1 TGTATCGATACATGAG-A-ATTGTATCGATACAG
561217 TGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATG-AGAATTGTATCGATACA
561249 TTGTCCCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAG
Found at i:565595 original size:49 final size:49
Alignment explanation
Indices: 565535--565632 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
565525 GATTATGGCT
*
565535 ATGCAAGAGGAATTAAATCGATTTGAGAGAAGCAGGGTATGGTCTTTAG
1 ATGCAAGAGGAATTAAATCAATTTGAGAGAAGCAGGGTATGGTCTTTAG
565584 ATGCAAGAGGAATTAAATCAATTTGAGAGAAGCAGGGTATGGTCTTTAG
1 ATGCAAGAGGAATTAAATCAATTTGAGAGAAGCAGGGTATGGTCTTTAG
565633 TAAAAAGACC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.27
Consensus pattern (49 bp):
ATGCAAGAGGAATTAAATCAATTTGAGAGAAGCAGGGTATGGTCTTTAG
Found at i:567502 original size:13 final size:13
Alignment explanation
Indices: 567474--567530 Score: 69
Period size: 13 Copynumber: 4.4 Consensus size: 13
567464 CTTTGCATCA
* *
567474 ATACATTGTATCG
1 ATACAATGTGTCG
*
567487 ATATAATGTGTCG
1 ATACAATGTGTCG
* *
567500 ATACATTGTGTCA
1 ATACAATGTGTCG
567513 ATACAATGTGTCG
1 ATACAATGTGTCG
567526 ATACA
1 ATACA
567531 TTGCATTGAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (13 bp):
ATACAATGTGTCG
Found at i:567541 original size:13 final size:13
Alignment explanation
Indices: 567525--567557 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
567515 ACAATGTGTC
567525 GATACATTGCATT
1 GATACATTGCATT
*
567538 GATACAATGCATT
1 GATACATTGCATT
567551 GATACAT
1 GATACAT
567558 GGGTTACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
GATACATTGCATT
Found at i:567542 original size:26 final size:26
Alignment explanation
Indices: 567474--567546 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
567464 CTTTGCATCA
*
567474 ATACATTGTATCGATATAATGTGTCG
1 ATACATTGTATCGATACAATGTGTCG
* *
567500 ATACATTGTGTCAATACAATGTGTCG
1 ATACATTGTATCGATACAATGTGTCG
* *
567526 ATACATTGCATTGATACAATG
1 ATACATTGTATCGATACAATG
567547 CATTGATACA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (26 bp):
ATACATTGTATCGATACAATGTGTCG
Found at i:574319 original size:89 final size:89
Alignment explanation
Indices: 574168--574349 Score: 355
Period size: 89 Copynumber: 2.0 Consensus size: 89
574158 TGAGCCAGCA
*
574168 TTCACAGAAAGTTGAGTTTGTGATTTTATGTGATCTAAATAATCCAAAATAAATCTAAAGAGCCT
1 TTCACAGAAAGTTGAGTTTGTGATTTTATGTGATCTAAATAATCCAAAATAAATCTAAAGAGCAT
574233 GAAACATCAAATTCATCAAATGTT
66 GAAACATCAAATTCATCAAATGTT
574257 TTCACAGAAAGTTGAGTTTGTGATTTTATGTGATCTAAATAATCCAAAATAAATCTAAAGAGCAT
1 TTCACAGAAAGTTGAGTTTGTGATTTTATGTGATCTAAATAATCCAAAATAAATCTAAAGAGCAT
574322 GAAACATCAAATTCATCAAATGTT
66 GAAACATCAAATTCATCAAATGTT
574346 TTCA
1 TTCA
574350 AGTTTTTTGG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 92 1.00
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (89 bp):
TTCACAGAAAGTTGAGTTTGTGATTTTATGTGATCTAAATAATCCAAAATAAATCTAAAGAGCAT
GAAACATCAAATTCATCAAATGTT
Found at i:577208 original size:19 final size:20
Alignment explanation
Indices: 577161--577211 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
577151 CACACCCAGA
* *
577161 TGTATCGATACGTATTACTT
1 TGTATCGATACATATTACAT
* *
577181 TGTACCGATACATGTT-CAT
1 TGTATCGATACATATTACAT
577200 TGTATCGATACA
1 TGTATCGATACA
577212 CCATAAAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTACAT
Found at i:577824 original size:31 final size:32
Alignment explanation
Indices: 577748--577828 Score: 92
Period size: 34 Copynumber: 2.5 Consensus size: 32
577738 AAGTGATTGA
***
577748 GAGGTTCTATCTTAGCCTTTGTAAAAGATAGG
1 GAGGTTCTATCTTAGCCTTAAAAAAAGATAGG
*
577780 GAAGAGATACTATCTTAGCC-TAAAAAAAGATAGG
1 G-AG-G-TTCTATCTTAGCCTTAAAAAAAGATAGG
577814 GAGGTTCTATCTTAG
1 GAGGTTCTATCTTAG
577829 GTTGTGAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
31 10 0.24
32 2 0.05
33 4 0.10
34 13 0.32
35 12 0.29
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (32 bp):
GAGGTTCTATCTTAGCCTTAAAAAAAGATAGG
Found at i:588195 original size:76 final size:76
Alignment explanation
Indices: 588069--588221 Score: 279
Period size: 76 Copynumber: 2.0 Consensus size: 76
588059 CAAAAATTAT
*
588069 AAACACGAATGCTCAAGGACCCAAGAAAATTTGGGTACCGAAAAACAAGTTGTGATTTTATGTTC
1 AAACACGAATGCTCAAGGACCCAAGAAAATTTGGGTACCGAAAAACAAGTTATGATTTTATGTTC
588134 GTAGGAAAAAG
66 GTAGGAAAAAG
* *
588145 AAACACGAATGCTTAAGGACCCAAGAAAATTTGGGTACCGAAAAACAAGTTATGATTTTGTGTTC
1 AAACACGAATGCTCAAGGACCCAAGAAAATTTGGGTACCGAAAAACAAGTTATGATTTTATGTTC
588210 GTAGGAAAAAG
66 GTAGGAAAAAG
588221 A
1 A
588222 GCATTACTCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (76 bp):
AAACACGAATGCTCAAGGACCCAAGAAAATTTGGGTACCGAAAAACAAGTTATGATTTTATGTTC
GTAGGAAAAAG
Found at i:590823 original size:17 final size:17
Alignment explanation
Indices: 590801--590834 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
590791 ATTAAGGGGG
*
590801 AGATTTCTCATACAATT
1 AGATTTCTCATAAAATT
590818 AGATTTCTCATAAAATT
1 AGATTTCTCATAAAATT
590835 GGTACTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (17 bp):
AGATTTCTCATAAAATT
Found at i:591376 original size:21 final size:22
Alignment explanation
Indices: 591335--591378 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
591325 GACAAGTTTA
591335 AATGTTTTTTAAGCAATAAATT
1 AATGTTTTTTAAGCAATAAATT
*
591357 AATGTTTTTTAAGTAA-AAATT
1 AATGTTTTTTAAGCAATAAATT
591378 A
1 A
591379 TTCAAAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.45
Consensus pattern (22 bp):
AATGTTTTTTAAGCAATAAATT
Found at i:591486 original size:20 final size:20
Alignment explanation
Indices: 591454--591508 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
591444 AAAACCTTTG
* *
591454 AATGTATCGATACACACCTA
1 AATGCATCGATACACACCCA
*
591474 AATGCATCTATACACACCCA
1 AATGCATCGATACACACCCA
*
591494 AATGTATCGATACAC
1 AATGCATCGATACAC
591509 CATAAAATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.27, G:0.09, T:0.24
Consensus pattern (20 bp):
AATGCATCGATACACACCCA
Found at i:591516 original size:20 final size:19
Alignment explanation
Indices: 591454--591525 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
591444 AAAACCTTTG
*
591454 AATGTATCGATACACACCTA
1 AATGTATCGATACAC-CATA
* * **
591474 AATGCATCTATACACACCCA
1 AATGTATCGATACAC-CATA
591494 AATGTATCGATACACCATAA
1 AATGTATCGATACACCAT-A
591514 AATGTATCGATA
1 AATGTATCGATA
591526 AATGCAATTG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 1 0.02
20 43 0.98
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.25
Consensus pattern (19 bp):
AATGTATCGATACACCATA
Found at i:592101 original size:31 final size:31
Alignment explanation
Indices: 592042--592128 Score: 86
Period size: 31 Copynumber: 2.7 Consensus size: 31
592032 TCCAAGTGTT
***
592042 TAAGAA-GTTCTATCTTAGCCTTTGTAAAAGA
1 TAAGAAGGTTCTATCTTAGCC-TAAAAAAAGA
*
592073 TAAGAAAAAGGTTTTATCTTAGCCTAAAAAAAGA
1 TAAG---AAGGTTCTATCTTAGCCTAAAAAAAGA
*
592107 TAAGGAGGTTCTATCTTAGCCT
1 TAAGAAGGTTCTATCTTAGCCT
592129 GTGAAATGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
31 20 0.43
34 13 0.28
35 13 0.28
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (31 bp):
TAAGAAGGTTCTATCTTAGCCTAAAAAAAGA
Found at i:594028 original size:16 final size:16
Alignment explanation
Indices: 594007--594050 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
593997 ACTCCATACC
594007 AGCAATTGCAACAACA
1 AGCAATTGCAACAACA
* *
594023 AGCAATAGCAACACCA
1 AGCAATTGCAACAACA
*
594039 A-CAATTACAACA
1 AGCAATTGCAACA
594051 GCAAAGAGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.52, C:0.27, G:0.09, T:0.11
Consensus pattern (16 bp):
AGCAATTGCAACAACA
Found at i:594099 original size:21 final size:21
Alignment explanation
Indices: 594074--594119 Score: 71
Period size: 18 Copynumber: 2.3 Consensus size: 21
594064 AAAAACAGCG
594074 ACAAACAACACCAAGGAAACA
1 ACAAACAACACCAAGGAAACA
594095 AC--A-AACACCAAGGAAACA
1 ACAAACAACACCAAGGAAACA
594113 ACAAACA
1 ACAAACA
594120 CCAAGCTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 17 0.77
19 1 0.05
20 1 0.05
21 3 0.14
ACGTcount: A:0.63, C:0.28, G:0.09, T:0.00
Consensus pattern (21 bp):
ACAAACAACACCAAGGAAACA
Found at i:594101 original size:18 final size:18
Alignment explanation
Indices: 594080--594124 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
594070 AGCGACAAAC
594080 AACACCAAGGAAACAACA
1 AACACCAAGGAAACAACA
594098 AACACCAAGGAAACAACA
1 AACACCAAGGAAACAACA
594116 AACACCAAG
1 AACACCAAG
594125 CTAGTTTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.60, C:0.29, G:0.11, T:0.00
Consensus pattern (18 bp):
AACACCAAGGAAACAACA
Found at i:595042 original size:165 final size:166
Alignment explanation
Indices: 594764--595061 Score: 406
Period size: 165 Copynumber: 1.8 Consensus size: 166
594754 TATTAAGGGC
* * ** * *
594764 AAAATGGTCTTTTCATGCCCACTCGAGTCATATTTTTATATTCTTATGGTTTTCTTTAGGGGTAT
1 AAAATGGTCTTTTCATGCCCACTCGAGTCATATTTTCATATTCCTATGGTTTTCCGTAAGAGTAT
* * *
594829 AAAAATTTTTAAACCCTTTCATATCCCCTAGTTTTTTGTCAGGTACGAAAGGTAATTTTCAAATT
66 AAAAATTTTTAAACCCTTTCATATCCCCTAGTTTTTCGTCAGGTACGAAACGTAATTTTCAAAAT
594894 TTAGAAGCATTTGGCCTCCCTAGATTGACATTTAAA
131 TTAGAAGCATTTGGCCTCCCTAGATTGACATTTAAA
* * *
594930 AAAATGGTCATTTT-TTG-CCATTCGAGTCATGTTTTCATATTCCTATGGTTTTCCGTAAGAGTA
1 AAAATGGTC-TTTTCATGCCCACTCGAGTCATATTTTCATATTCCTATGGTTTTCCGTAAGAGTA
* **
594993 TGAAAATTTCTTAAA-CCTTTTGTATCCCCTAGTTTTTCGTC-GAGTACGAAACGTAATTTTCAA
65 TAAAAATTT-TTAAACCCTTTCATATCCCCTAGTTTTTCGTCAG-GTACGAAACGTAATTTTCAA
595056 AATTTA
128 AATTTA
595062 AAAACTAACT
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
164 1 0.01
165 93 0.82
166 16 0.14
167 4 0.04
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (166 bp):
AAAATGGTCTTTTCATGCCCACTCGAGTCATATTTTCATATTCCTATGGTTTTCCGTAAGAGTAT
AAAAATTTTTAAACCCTTTCATATCCCCTAGTTTTTCGTCAGGTACGAAACGTAATTTTCAAAAT
TTAGAAGCATTTGGCCTCCCTAGATTGACATTTAAA
Found at i:598094 original size:19 final size:19
Alignment explanation
Indices: 598049--598099 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
598039 TACACCCAGA
*
598049 TGTATCGATACATATTCCT
1 TGTATCGATACATATTCAT
*
598068 TAGTATCGATACATGTTCAT
1 T-GTATCGATACATATTCAT
598088 TGTATCGATACA
1 TGTATCGATACA
598100 CCATAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (19 bp):
TGTATCGATACATATTCAT
Found at i:598619 original size:36 final size:35
Alignment explanation
Indices: 598571--598721 Score: 169
Period size: 31 Copynumber: 4.5 Consensus size: 35
598561 AAGTGATTGA
598571 GAGGTTCTATCTTAGCCTT-TGAAAAAGATAGGGAG
1 GAGGTTCTATCTTAGCCTTGTG-AAAAGATAGGGAG
* * *
598606 AAAGGTTCTATCTTAGCC-TGTGAAATGATAGGGAA
1 -GAGGTTCTATCTTAGCCTTGTGAAAAGATAGGGAG
*
598641 GAGTTTCTATCTTAG-CTTGTGAAAAGATA---AG
1 GAGGTTCTATCTTAGCCTTGTGAAAAGATAGGGAG
*
598672 GAGGTTCTATCTTA-TCTTGTGAAAAGATAGGGA-
1 GAGGTTCTATCTTAGCCTTGTGAAAAGATAGGGAG
598705 GA--TTCTATCTTAGCCTT
1 GAGGTTCTATCTTAGCCTT
598722 CAAAAGATAG
Statistics
Matches: 99, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
31 38 0.38
32 3 0.03
33 3 0.03
34 25 0.25
35 12 0.12
36 18 0.18
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (35 bp):
GAGGTTCTATCTTAGCCTTGTGAAAAGATAGGGAG
Found at i:600379 original size:21 final size:22
Alignment explanation
Indices: 600355--600403 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
600345 GAATTACAGG
* *
600355 AGAAAAGAATTGAGTTGGAA-A
1 AGAAAAGAAATGAGTTGCAAGA
600376 AGAAAAGAAATGAGTTGCAAGA
1 AGAAAAGAAATGAGTTGCAAGA
600398 AGAAAA
1 AGAAAA
600404 TGATGAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.57, C:0.02, G:0.27, T:0.14
Consensus pattern (22 bp):
AGAAAAGAAATGAGTTGCAAGA
Found at i:604857 original size:30 final size:31
Alignment explanation
Indices: 604699--604857 Score: 142
Period size: 31 Copynumber: 4.9 Consensus size: 31
604689 AAGTGATTGA
*
604699 GAGGTTCTATCTTAG-CTTTGGAAAAAGATAGGG
1 GAGGTTCTATCTTAGCCTGT-G-AAAAGATA-GG
*
604732 AGAAAGGTTCTATCTTAGCCTGTGAAAATATAGG
1 -G--AGGTTCTATCTTAGCCTGTGAAAAGATAGG
* * *
604766 GAAAATGTTTTATCTTAGCCTGGGAAAAGATAGG
1 G---AGGTTCTATCTTAGCCTGTGAAAAGATAGG
* * *
604800 GAGGTTCTGTCTTAGCTTGTGAAAAGATATG
1 GAGGTTCTATCTTAGCCTGTGAAAAGATAGG
*
604831 GAGGTTCTATCTTAGCCT-TCAAAAGAT
1 GAGGTTCTATCTTAGCCTGTGAAAAGAT
604858 TATGTTGTAA
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
30 8 0.08
31 40 0.38
33 1 0.01
34 32 0.30
35 7 0.07
36 15 0.14
37 3 0.03
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.31
Consensus pattern (31 bp):
GAGGTTCTATCTTAGCCTGTGAAAAGATAGG
Found at i:607265 original size:24 final size:24
Alignment explanation
Indices: 607238--607284 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
607228 TTCAGAGGAA
607238 AGCCTATTAAGTTATCTTTCTAAT
1 AGCCTATTAAGTTATCTTTCTAAT
607262 AGCCTATTAAGTTATCTTTCTAA
1 AGCCTATTAAGTTATCTTTCTAA
607285 CAACATATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.45
Consensus pattern (24 bp):
AGCCTATTAAGTTATCTTTCTAAT
Found at i:610624 original size:20 final size:20
Alignment explanation
Indices: 610582--610635 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
610572 TTCAACTATT
*
610582 TGTATCGATATAATAAGGCAA
1 TGTATCGATA-CATAAGGCAA
610603 TGTATCGATACATAAGTG-AA
1 TGTATCGATACATAAG-GCAA
*
610623 TGTATCAATACAT
1 TGTATCGATACAT
610636 GCTCGAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGGCAA
Found at i:610743 original size:20 final size:20
Alignment explanation
Indices: 610696--610743 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
610686 AAAGAAAATG
*
610696 TATCGATACATTTTTCATTG
1 TATCGATACATTTTTCATTA
*
610716 TATCGATACATTTTTTATTA
1 TATCGATACATTTTTCATTA
*
610736 TATTGATA
1 TATCGATA
610744 AATTCTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.52
Consensus pattern (20 bp):
TATCGATACATTTTTCATTA
Found at i:611594 original size:33 final size:33
Alignment explanation
Indices: 611557--611623 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
611547 TTCAACGATT
611557 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
611590 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
611623 T
1 T
611624 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:611595 original size:13 final size:13
Alignment explanation
Indices: 611577--611601 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
611567 CATAAAATGT
611577 TGTATCGATACAA
1 TGTATCGATACAA
611590 TGTATCGATACA
1 TGTATCGATACA
611602 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:611682 original size:13 final size:13
Alignment explanation
Indices: 611664--611688 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
611654 ATTACTCAAA
611664 TGTATCGATACAT
1 TGTATCGATACAT
611677 TGTATCGATACA
1 TGTATCGATACA
611689 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:611790 original size:52 final size:52
Alignment explanation
Indices: 611697--611820 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
611687 CACTGATCTT
*
611697 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
611748 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
611800 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
611821 CTTTTCATAT
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
51 19 0.28
52 47 0.68
53 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:621293 original size:21 final size:20
Alignment explanation
Indices: 621268--621320 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
621258 TACAAGCCAA
**
621268 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA-TACTTGG
621289 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
621308 TGTATCGATACAA
1 TGTATCGATACAA
621321 GTTTGGCGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:621326 original size:19 final size:18
Alignment explanation
Indices: 621268--621326 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 18
621258 TACAAGCCAA
621268 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA---TTTGG
*
621289 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
621308 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
621327 CGACTGCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.03
19 20 0.59
21 12 0.35
22 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:623691 original size:21 final size:21
Alignment explanation
Indices: 623667--623713 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
623657 TTTGAGGCTG
623667 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
*
623687 AATTTGAAGTGAAAAACAAGT
1 ATTTTGAAGTGAAAAACAAGT
623708 ATTTTG
1 ATTTTG
623714 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:623852 original size:13 final size:13
Alignment explanation
Indices: 623834--623872 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
623824 ATAATCCCCC
*
623834 TGTATCGATACAG
1 TGTATCGATACAA
623847 TGTATCGATACAA
1 TGTATCGATACAA
623860 TGTATCGATACAA
1 TGTATCGATACAA
623873 AGAAAGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:623888 original size:46 final size:46
Alignment explanation
Indices: 623834--623937 Score: 120
Period size: 46 Copynumber: 2.3 Consensus size: 46
623824 ATAATCCCCC
* *
623834 TGTATCGATACAGTGTATCGATAC-AATGTATCGATACAAAGAAAGA
1 TGTATCGATACAGTGAAT-GATACGAATGTATCGATACAAAGAAACA
* ** * * *
623880 TGTATCGATACATTGAATTTTCCGGATGTATCGATACACAGAAACA
1 TGTATCGATACAGTGAATGATACGAATGTATCGATACAAAGAAACA
623926 TGTATCGATACA
1 TGTATCGATACA
623938 TTTTGGAAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 2 0.04
46 47 0.96
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (46 bp):
TGTATCGATACAGTGAATGATACGAATGTATCGATACAAAGAAACA
Found at i:627810 original size:22 final size:20
Alignment explanation
Indices: 627761--627812 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
627751 ATCATGCAAG
627761 TTTTTATTTTTCTTAGCTAAT
1 TTTTTA-TTTTCTTAGCTAAT
**
627782 TCATTATTTTCATTAGCTAAAT
1 TTTTTATTTTC-TTAGCT-AAT
627804 TTTTTATTT
1 TTTTTATTT
627813 CAACTTGCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 5 0.20
21 10 0.40
22 10 0.40
ACGTcount: A:0.23, C:0.10, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTTATTTTCTTAGCTAAT
Found at i:630045 original size:13 final size:13
Alignment explanation
Indices: 630027--630052 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
630017 AATTTTTTGG
630027 TGTATCGATACAT
1 TGTATCGATACAT
630040 TGTATCGATACAT
1 TGTATCGATACAT
630053 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:631512 original size:135 final size:138
Alignment explanation
Indices: 631370--631630 Score: 413
Period size: 135 Copynumber: 1.9 Consensus size: 138
631360 TAGGTTTCTT
* * * *
631370 ATTTTTAAAATTCATCAAATATTATT-GTTTATTTCATATTAATTCAGTTTTCAAAAATTCATTC
1 ATTTTTAAAATTCATCAAACATCATTAG-TTATTTCATATCAAATCAGTTTTCAAAAATTCATTC
* *
631434 ATTTTCATGAGTTTTTTATTTTTTT-CTTGAAATTCT-TTTTTTT-CGAAATATGGTGTTTTTCT
65 ATTTTCATGAGTTTTTGATTTTTTTCCTTGAAATTCTCTTTTTTTACGAAATACGGTGTTTTTCT
631496 CAGTTTTCA
130 CAGTTTTCA
* *
631505 ATTTTTAAAATTCATCAAACATCATTAGTTATTTCTTATCAAATCTGTTTTCAAAAATTCATTCA
1 ATTTTTAAAATTCATCAAACATCATTAGTTATTTCATATCAAATCAGTTTTCAAAAATTCATTCA
631570 TTTTCATGAGTTTTTGATTTTTTTCCTTGAAATTCTCTTTTTTTACGAAATACGGTGTTTT
66 TTTTCATGAGTTTTTGATTTTTTTCCTTGAAATTCTCTTTTTTTACGAAATACGGTGTTTT
631631 CTACTCCGTA
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
135 80 0.70
136 12 0.11
137 7 0.06
138 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.53
Consensus pattern (138 bp):
ATTTTTAAAATTCATCAAACATCATTAGTTATTTCATATCAAATCAGTTTTCAAAAATTCATTCA
TTTTCATGAGTTTTTGATTTTTTTCCTTGAAATTCTCTTTTTTTACGAAATACGGTGTTTTTCTC
AGTTTTCA
Found at i:632376 original size:11 final size:11
Alignment explanation
Indices: 632362--632421 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
632352 GTTTAGCTAA
632362 AAAAAAGAGAG
1 AAAAAAGAGAG
* *
632373 AAAAAAAAGAC
1 AAAAAAGAGAG
*
632384 AAAAAA-AGAA
1 AAAAAAGAGAG
*
632394 AGAAAAAGGGAG
1 A-AAAAAGAGAG
* *
632406 AAAATAGAGTG
1 AAAAAAGAGAG
632417 AAAAA
1 AAAAA
632422 TTAGAAAGCT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
10 4 0.11
11 31 0.82
12 3 0.08
ACGTcount: A:0.73, C:0.02, G:0.22, T:0.03
Consensus pattern (11 bp):
AAAAAAGAGAG
Found at i:634744 original size:1 final size:1
Alignment explanation
Indices: 634738--634860 Score: 57
Period size: 1 Copynumber: 123.0 Consensus size: 1
634728 CATCCTCCAC
* * * * * * * * * *
634738 AAAAAAAAAACACAAAAACAAAACAAAACAAAAAAAAAAGAAAGAAAGAAAAAACAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * * *
634803 ACAAAAACATAAACAAAACAAAACAAACAAAAACAAGAAAGAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
634861 CAACGACGAA
Statistics
Matches: 80, Mismatches: 42, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
1 80 1.00
ACGTcount: A:0.83, C:0.12, G:0.04, T:0.01
Consensus pattern (1 bp):
A
Found at i:634758 original size:6 final size:6
Alignment explanation
Indices: 634736--634863 Score: 102
Period size: 6 Copynumber: 20.7 Consensus size: 6
634726 GGCATCCTCC
* *
634736 ACAAAA AAAAAA CACAAAA AC-AAA AC-AAA ACAAAA A-AAAA AGAAAGAA
1 ACAAAA ACAAAA -ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA A-CAA-AA
* * *
634784 AGAAAAA ACAAAA ACAAAA ACAAAA ACATAA ACAAAA CAAAACAA ACAAAA
1 A-CAAAA ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA -ACAA-AA ACAAAA
*
634835 ACAAGAA AGAAAAA ACAAAA A-AAAA ACAA
1 ACAA-AA A-CAAAA ACAAAA ACAAAA ACAA
634864 CGACGAAAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
5 20 0.19
6 50 0.49
7 22 0.21
8 11 0.11
ACGTcount: A:0.82, C:0.13, G:0.04, T:0.01
Consensus pattern (6 bp):
ACAAAA
Found at i:634760 original size:5 final size:5
Alignment explanation
Indices: 634752--634834 Score: 71
Period size: 5 Copynumber: 15.8 Consensus size: 5
634742 AAAAAACACA
* * *
634752 AAAAC AAAAC AAAAC AAAA- AAAAA AGAAAG AAAGAA AAAAC AAAAAC
1 AAAAC AAAAC AAAAC AAAAC AAAAC A-AAAC AAA-AC AAAAC -AAAAC
634799 AAAAAC AAAAAC ATAAAC AAAAC AAAAC -AAAC AAAA
1 -AAAAC -AAAAC A-AAAC AAAAC AAAAC AAAAC AAAA
634835 ACAAGAAAGA
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
4 8 0.12
5 31 0.45
6 30 0.43
ACGTcount: A:0.82, C:0.13, G:0.04, T:0.01
Consensus pattern (5 bp):
AAAAC
Found at i:634827 original size:60 final size:59
Alignment explanation
Indices: 634736--634863 Score: 188
Period size: 58 Copynumber: 2.2 Consensus size: 59
634726 GGCATCCTCC
*
634736 ACAAAAAAAAAACACAAAAACAAAACAAAACAAAAAAAAAAGAAAGAAAGAAAAAACAAAA
1 ACAAAAACAAAACACAAAAACAAAACAAAAC-AAAAAAAAA-AAAGAAAGAAAAAACAAAA
* * *
634797 ACAAAAACAAAA-ACATAAACAAAACAAAACAAACAAAAACAAGAAAGAAAAAACAAAA
1 ACAAAAACAAAACACAAAAACAAAACAAAACAAAAAAAAAAAAGAAAGAAAAAACAAAA
634855 A-AAAAACAA
1 ACAAAAACAA
634864 CGACGAAAAG
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
57 8 0.13
58 19 0.30
59 8 0.13
60 17 0.27
61 11 0.17
ACGTcount: A:0.82, C:0.13, G:0.04, T:0.01
Consensus pattern (59 bp):
ACAAAAACAAAACACAAAAACAAAACAAAACAAAAAAAAAAAAGAAAGAAAAAACAAAA
Found at i:634872 original size:25 final size:24
Alignment explanation
Indices: 634751--634859 Score: 82
Period size: 22 Copynumber: 4.6 Consensus size: 24
634741 AAAAAAACAC
* * *
634751 AAAAACAAAACAAAACAAAAAAAA
1 AAAAACAAAAAAAAACAAGAAAGA
* *
634775 AAGAAAGAAAGAAAAAACAA-AAA-C
1 AA-AAACAAA-AAAAAACAAGAAAGA
* * *
634799 AAAAACAAAAACATA-AACAAA-A
1 AAAAACAAAAAAAAACAAGAAAGA
* *
634821 CAAAACAAACAAAAACAAGAAAGA
1 AAAAACAAAAAAAAACAAGAAAGA
634845 AAAAACAAAAAAAAA
1 AAAAACAAAAAAAAA
634860 ACAACGACGA
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
21 2 0.03
22 18 0.27
23 11 0.17
24 18 0.27
25 9 0.14
26 8 0.12
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.01
Consensus pattern (24 bp):
AAAAACAAAAAAAAACAAGAAAGA
Found at i:636347 original size:30 final size:29
Alignment explanation
Indices: 636311--636423 Score: 131
Period size: 29 Copynumber: 3.9 Consensus size: 29
636301 CACCCTGTCA
636311 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCC
* *
636341 GAAGCCCACAAGTCAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTCC
* *
636370 AAAGCCCACAAGCCAGTGGCAACC--TTCA
1 AAAGCCCACAAGTCAGTGGC-ACCTTTTCC
* * *
636398 AAAGTCCACAACTCCGTGGCACCTTT
1 AAAGCCCACAAGTCAGTGGCACCTTT
636424 CTTCTTTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
27 3 0.04
28 19 0.27
29 26 0.37
30 22 0.31
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCACCTTTTCC
Found at i:636376 original size:29 final size:30
Alignment explanation
Indices: 636311--636616 Score: 149
Period size: 34 Copynumber: 9.9 Consensus size: 30
636301 CACCCTGTCA
636311 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* *
636341 GAAGCCCACAAGTCAGTGGCA-TCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * *
636370 AAAGCCCACAAGCCAGTGGCAACC--TTCA
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * * **
636398 AAAGTCCACAACTCCGTGGCACCTTTCTTCTTTTT
1 AAAGCCCACAAGTCAGTGGCACC---C-T-TTTCC
* * *
636433 AAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 AAAGCCCACAAGTCAGTGGCAC-CCTTTTCC
* * * **
636464 TTTTAAGCCCACAACTCCGTGGCACTTTTTTTCC
1 ---AAAGCCCACAAGTCAGTGGCAC-CCTTTTCC
* * * *
636498 TTTTAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 ---AAAGCCCACAAGTCAGTGGCAC-CCTTTTCC
* * * *
636532 TTTTAAGTCCACAACTCCGTGGCACCCTTTT--
1 ---AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* *
636563 -AAGCCCACAAGTCGGTGGCACCCCTTT-C
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
636591 AAAGCCCACAAGTCAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGCACCCTT
636617 CAAAAGCACA
Statistics
Matches: 229, Mismatches: 33, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
27 23 0.10
28 21 0.09
29 48 0.21
30 21 0.09
31 4 0.02
32 1 0.00
33 5 0.02
34 83 0.36
35 22 0.10
36 1 0.00
ACGTcount: A:0.24, C:0.34, G:0.15, T:0.27
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCACCCTTTTCC
Found at i:636477 original size:34 final size:34
Alignment explanation
Indices: 636403--636562 Score: 241
Period size: 34 Copynumber: 4.7 Consensus size: 34
636393 CTTCAAAAGT
*
636403 CCACAACTCCGTGGCAC-CTTTCTTCTTTTTAAAGC
1 CCACAACTCCGTGGCACTCTTT-TTCCTTTT-AAGC
*
636438 CCACAACTCTGTGGCACTCTTTTTCCTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
*
636472 CCACAACTCCGTGGCACTTTTTTTCCTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
* *
636506 CCACAACTCTGTGGCACTCTTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
*
636540 CCACAACTCCGTGGCACCCTTTT
1 CCACAACTCCGTGGCACTCTTTT
636563 AAGCCCACAA
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
34 88 0.77
35 23 0.20
36 4 0.03
ACGTcount: A:0.18, C:0.34, G:0.12, T:0.36
Consensus pattern (34 bp):
CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGC
Found at i:636524 original size:68 final size:69
Alignment explanation
Indices: 636403--636557 Score: 267
Period size: 68 Copynumber: 2.3 Consensus size: 69
636393 CTTCAAAAGT
*
636403 CCACAACTCCGTGGCACCTTTCTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 CCACAACTCCGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
636468 AAGC
66 AAGC
* *
636472 CCACAACTCCGTGGCACTTTTTTTCCTTTT-AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 CCACAACTCCGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
*
636536 AAGT
66 AAGC
636540 CCACAACTCCGTGGCACC
1 CCACAACTCCGTGGCACC
636558 CTTTTAAGCC
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
68 54 0.67
69 27 0.33
ACGTcount: A:0.19, C:0.34, G:0.12, T:0.35
Consensus pattern (69 bp):
CCACAACTCCGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
AAGC
Found at i:636560 original size:27 final size:27
Alignment explanation
Indices: 636530--636616 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 27
636520 CACTCTTTTT
*
636530 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
* *
636557 CCTTTTAAGCCCACAAGTCGGTGGCACC
1 CCTTTTAAGCCCACAACTCCGTGGCA-C
* * * *
636585 CCTTTCAAAGCCCACAAGTCAGTGGCAA
1 CCTTT-TAAGCCCACAACTCCGTGGCAC
636613 CCTT
1 CCTT
636617 CAAAAGCACA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 23 0.44
28 10 0.19
29 19 0.37
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.23
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:636616 original size:28 final size:28
Alignment explanation
Indices: 636540--636631 Score: 98
Period size: 28 Copynumber: 3.3 Consensus size: 28
636530 CCTTTTAAGT
* * *
636540 CCACAACTCCGTGGCACCCTTT-TAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
636567 CCACAAGTCGGTGGCACCCCTTTCAAAGC
1 CCACAAGTCAGTGGCA-CCCTTTCAAAGC
*
636596 CCACAAGTCAGTGGCAACC-TTCAAAAGC
1 CCACAAGTCAGTGGCACCCTTTC-AAAGC
*
636624 ACACAAGT
1 CCACAAGT
636632 TGATGCAACC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 17 0.30
28 20 0.36
29 19 0.34
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.17
Consensus pattern (28 bp):
CCACAAGTCAGTGGCACCCTTTCAAAGC
Found at i:636759 original size:50 final size:46
Alignment explanation
Indices: 636684--636947 Score: 179
Period size: 49 Copynumber: 5.8 Consensus size: 46
636674 TCTTCTAAGT
*
636684 CCAATATCGCTGGCCTTGAACCAGCATATTGGCACCTTTATCTTTAAAA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC---ATCTTTAAAA
* * **
636733 CCCAATATCGCTGGCCTTGAATCAGCATATT-G-A-CACCTTGAAGT
1 -CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCTTTAAAA
* * *
636777 CCGATATCGTTGGCCTTGAATCAGCATATTGGCACCGGCATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C--CATCTTTAAAA
* * * **
636826 CCAATGTTGCTGGCCTTGAATCAGCACATTGG---CA----TAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCTTTAAAA
* * * * **
636865 CCAATATCGCTGGCTTTGAATCGGCGTATTGGCACCTTGTCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--ATCTTTAAAA
* * *
636913 CCAATGTCGCTGGCCTTGAATCAGCACATCGGCAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
636948 AAGTCCAATA
Statistics
Matches: 169, Mismatches: 30, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
39 30 0.18
42 1 0.01
43 30 0.18
44 7 0.04
45 1 0.01
47 1 0.01
48 34 0.20
49 36 0.21
50 29 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (46 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCTTTAAAA
Found at i:636805 original size:22 final size:21
Alignment explanation
Indices: 636737--636805 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
636727 TTAAAACCCA
636737 ATATCGCTGGCCTTGAATCAGC
1 ATATCG-TGGCCTTGAATCAGC
* *** *
636759 ATATTGACACCTTGAAGTCCG-
1 ATATCGTGGCCTTGAA-TCAGC
636780 ATATCGTTGGCCTTGAATCAGC
1 ATATCG-TGGCCTTGAATCAGC
636802 ATAT
1 ATAT
636806 TGGCACCGGC
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
21 15 0.44
22 19 0.56
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (21 bp):
ATATCGTGGCCTTGAATCAGC
Found at i:636805 original size:93 final size:89
Alignment explanation
Indices: 636678--636993 Score: 368
Period size: 87 Copynumber: 3.5 Consensus size: 89
636668 GCGTCTTCTT
* *
636678 CTAAGTCCAATATCGCTGGCCTTGAACCAGCATATTGGCACCTTTATCTTTAAAACCCAATATCG
1 CTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAAA-CCAATGTCG
* *
636743 CTGGCCTTGAATCAGCATATTGACA
65 CTGGCCTTGAATCAGCACATTGGCA
* * *** *
636768 CCTTGAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCACCGGCATCTTTAAGACCAATGT
1 -C-T-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAAACCAATGT
*
636833 TGCTGGCCTTGAATCAGCACATTGGCA
63 CGCTGGCCTTGAATCAGCACATTGGCA
* * * * * **
636860 -TAAGCCCAATATCGCTGGCTTTGAATCGGCGTATTGGCACC-TTGTCTTTAAGTCCAATGTCGC
1 CTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAAACCAATGTCGC
*
636923 TGGCCTTGAATCAGCACATCGGCA
66 TGGCCTTGAATCAGCACATTGGCA
* * * *
636947 C-AAGTCCAATATCGTTAGCCGTGAATCAGCATATTGGCATCTTTATC
1 CTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
636994 ACTTTTCTCA
Statistics
Matches: 189, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
87 72 0.38
88 38 0.20
89 1 0.01
91 1 0.01
92 31 0.16
93 46 0.24
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (89 bp):
CTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAAACCAATGTCGC
TGGCCTTGAATCAGCACATTGGCA
Found at i:636877 original size:39 final size:39
Alignment explanation
Indices: 636734--636986 Score: 119
Period size: 39 Copynumber: 5.9 Consensus size: 39
636724 TCTTTAAAAC
* *
636734 CCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTGAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCA---T-AAGT
* * * *
636777 CCGATATCGTTGGCCTTGAATCAGCATATTGGCACCGGCATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATT------GGCA----TAAGT
* * *
636826 CCAATGTTGCTGGCCTTGAATCAGCACATTGGCATAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCATAAGT
* * * *
636865 CCAATATCGCTGGCTTTGAATCGGCGTATTGGCACCTTGTCTTTAAGT
1 CCAATATCGCTGGCCTTGAAT---C--A---GCACATTGGC-ATAAGT
* * *
636913 CCAATGTCGCTGGCCTTGAATCAGCACATCGGCACAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCATAAGT
* * * *
636952 CCAATATCGTTAGCCGTGAATCAGCATATTGGCAT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCAT
636987 CTTTATCACT
Statistics
Matches: 162, Mismatches: 32, Indels: 36
0.70 0.14 0.16
Matches are distributed among these distances:
39 54 0.33
40 7 0.04
42 1 0.01
43 33 0.20
44 1 0.01
45 1 0.01
47 8 0.05
48 23 0.14
49 31 0.19
50 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGGCATAAGT
Found at i:637815 original size:13 final size:13
Alignment explanation
Indices: 637797--637915 Score: 67
Period size: 13 Copynumber: 7.8 Consensus size: 13
637787 CAACAATTTC
637797 TATCGATACAATG
1 TATCGATACAATG
637810 TATCGATACATAAGTGTTG
1 TATCGATAC--AA----TG
637829 TATCGATACAATG
1 TATCGATACAATG
637842 TATCGATACATAAGTGTTG
1 TATCGATAC--AA----TG
*
637861 TATTGATACAATG
1 TATCGATACAATG
637874 TATCGATACATAAGTGTTG
1 TATCGATAC--AA----TG
637893 TATCGATACAATG
1 TATCGATACAATG
637906 TATCGATACA
1 TATCGATACA
637916 TAAGTTTTGT
Statistics
Matches: 86, Mismatches: 2, Indels: 36
0.69 0.02 0.29
Matches are distributed among these distances:
13 42 0.49
15 6 0.07
17 6 0.07
19 32 0.37
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:637832 original size:19 final size:18
Alignment explanation
Indices: 637808--637934 Score: 104
Period size: 19 Copynumber: 7.7 Consensus size: 18
637798 ATCGATACAA
637808 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
637827 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
637840 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
*
637859 TGTATTGATAC--AA---
1 TGTATCGATACATAAGTT
637872 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
637891 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
637904 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
637923 TGTATCGATACA
1 TGTATCGATACA
637935 ATGTATCGCT
Statistics
Matches: 88, Mismatches: 2, Indels: 36
0.70 0.02 0.29
Matches are distributed among these distances:
13 32 0.36
15 6 0.07
17 6 0.07
19 44 0.50
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:637838 original size:32 final size:32
Alignment explanation
Indices: 637797--637942 Score: 274
Period size: 32 Copynumber: 4.6 Consensus size: 32
637787 CAACAATTTC
637797 TATCGATACAATGTATCGATACATAAGTGTTG
1 TATCGATACAATGTATCGATACATAAGTGTTG
637829 TATCGATACAATGTATCGATACATAAGTGTTG
1 TATCGATACAATGTATCGATACATAAGTGTTG
*
637861 TATTGATACAATGTATCGATACATAAGTGTTG
1 TATCGATACAATGTATCGATACATAAGTGTTG
*
637893 TATCGATACAATGTATCGATACATAAGTTTTG
1 TATCGATACAATGTATCGATACATAAGTGTTG
637925 TATCGATACAATGTATCG
1 TATCGATACAATGTATCG
637943 CTACGAAGCT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 111 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
TATCGATACAATGTATCGATACATAAGTGTTG
Found at i:638691 original size:13 final size:13
Alignment explanation
Indices: 638673--638698 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
638663 TACAGCAAGT
638673 ATGTATCGATACA
1 ATGTATCGATACA
638686 ATGTATCGATACA
1 ATGTATCGATACA
638699 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:642674 original size:157 final size:156
Alignment explanation
Indices: 642228--643362 Score: 732
Period size: 157 Copynumber: 7.3 Consensus size: 156
642218 TTACGACAAC
* * * *
642228 CGGGATACTTTTACGTCGAAGGTATACCCGTAAGGGCATTTTTCGTATTTTCCTAGAACCAAGTT
1 CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTT-GTATTTTCCTAAAACCAAGTC
* * *
642293 CTAGGTTGTCACCGAGTTTGCTTTTATGCCAAAGGTGGGCATTTAGGATA-GTTTCATCACCATT
65 CTAGGTTGTCACAG-GTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTT-ATCACCATT
* **
642357 TCTAGTCTTTTTAGGTCTTTTAGGGTTGC
128 TCTAGTCTTTTTAGGTCCTTTAGGGTTAT
* * * *
642386 CGTGATACTTTTACGTCAAAGGTATACCCATAGGGGCATTTTCGAATTTTCCT-AAACCAAGTCC
1 CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTTGTATTTTCCTAAAACCAAGTCC
* ** * *
642450 TAGGTTGTCACCAGGTCTGTTTTTATATCGAAAGTGGGCATTTAGGATAGGTTCATCACCATTTC
66 TAGGTTGTCA-CAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCATTTC
* *
642515 TAGTTTTTTTAGGTCCTTTAAGGTTAT
130 TAGTCTTTTTAGGTCCTTTAGGGTTAT
* * * *
642542 CGGGATACTTTTACATCGAAGTTATACCCATAGGGGTATTTTTGTATTTTCTTAAAACCAAGTCC
1 CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTTGTATTTTCCTAAAACCAAGTCC
* *
642607 TAGGTTGTCACTGCGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCATTTC
66 TAGGTTGTCACAG-GTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCATTTC
*
642672 TAGTCTCTTTAGGTCCTTTAGGGTTAT
130 TAGTCTTTTTAGGTCCTTTAGGGTTAT
* * * * * * * * * *
642699 CAGGG-CACTTTTATGTCAAAAGTATACTCGCA-A-GGGCATTTTTATAATTTCCTACAATCGAT
1 C-GGGATACTTTTACGTCGAAGGTATAC-C-CATAGGGGCATTTTTGTATTTTCCTAAAACCAAG
* ** * * ** * *
642761 TCCTAGGTTATCGATGGGTC--CATTTTAATGCCGAATGTAGATATTTATGATAGGTTCATC-CC
63 TCCTAGGTTGTC-ACAGGTCTGC-TTTT-ATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACC
* * * * *
642823 -TTCTATAATCCTTTTTAAGTCCTTTAGAGATAT
125 ATT-TCTAGT-CTTTTTAGGTCCTTTAGGGTTAT
* * * * * * * *
642856 TGGGATACTTTCACGTCGAAGGTATACCTATAAGGGCATTTTGGTAATTTT-TTAGAACCAATTC
1 CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTTGT-ATTTTCCTAAAACCAAGTC
** * * * * ** * *
642920 CTAGGTCATCACCGAGTTTGCTTTTATACCGAAGGTAGGTGTTTAGGATAGGTTCATC-CCATCT
65 CTAGGTTGTCACAG-GTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCATTT
* * *
642984 ATAATTCTTTTTAAGTCCTTTAGGAG-TAT
129 CT-AGTCTTTTTAGGTCCTTTAGG-GTTAT
* * * ** ** * *
643013 CGGG-TACTTTCACG-CAAAGGTAT-CCCCTAGGTACATTTTTGTAATTTT-CTTGAACAAACTC
1 CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTTGT-ATTTTCCTAAAACCAAGTC
* ** * * * * * * *
643074 CTTGGGCGTCACCAAGTCTGCTTTTATGCGGACGGTGGGTATTTCGGATAGGTTCATC-CTAGTT
65 CTAGGTTGTCA-CAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCA-TT
* * ** *
643138 TGTAATCCTTTTTAAATCCTTTAGGGATAT
128 TCTAGT-CTTTTTAGGTCCTTTAGGGTTAT
* * * * * ** ** * * ***
643168 CGAG-CACTTCTACGTCGAAGATAT-CCCCTAGGGATATTTTAATAATTTT-TTAGAATTGAGTC
1 CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTTGT-ATTTTCCTAAAACCAAGTC
* * * * * * *
643230 GTAGGTTGTCACAGGGTCCGCTTTTATACCAAAGGTGGGTATTTGGGATAGGTTCATC-CCATTT
65 CTAGGTTGTCACA-GGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCATTT
* * * ** *
643294 ATAATCCTTTTTAAGTTTTTTAGGGGTAT
129 CTAGT-CTTTTTAGGTCCTTTAGGGTTAT
* * * * *
643323 CGGG-TACTTTTAAGTCAAAGTTAT-TCCTTAGGGGCATTTT
1 CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTT
643363 CATAATTTTT
Statistics
Matches: 783, Mismatches: 166, Indels: 59
0.78 0.16 0.06
Matches are distributed among these distances:
154 77 0.10
155 105 0.13
156 236 0.30
157 305 0.39
158 57 0.07
159 3 0.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (156 bp):
CGGGATACTTTTACGTCGAAGGTATACCCATAGGGGCATTTTTGTATTTTCCTAAAACCAAGTCC
TAGGTTGTCACAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCATTTCT
AGTCTTTTTAGGTCCTTTAGGGTTAT
Found at i:643004 original size:314 final size:313
Alignment explanation
Indices: 642228--643007 Score: 817
Period size: 314 Copynumber: 2.5 Consensus size: 313
642218 TTACGACAAC
* *
642228 CGGGATACTTTTACGTCGAAGGTATACCCGTAAGGGCATTTTTCGTATTTTCCTAGAACCAAGTT
1 CGGGATACTTTTACGTCGAAGGTATACCCATAAGGGCA-TTTTCGTATTTTCTTAGAACCAA-TT
* *
642293 -CTAGGTTGTCACCGAGTTTGCTTTTATGCCAAAGGTGGGCATTTAGGATAGTTTCATCACCATT
64 CCTAGGTTGTCACCGAGTTTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCACCATT
* * * *
642357 TCTAGTCTTTTTAGGTCTTTTAGGGTTGCCGTGATACTTTTACGTCAAAGGTATACCCATAGGGG
129 TCTAGTCTTTTTAGGTCCTTTAGGGTTGCAGTGACACTTTTACGTCAAAAGTATACCCATAGGGG
* * ** * * *
642422 CATTTTCGAATTTTCCTAAACCAAGTCCTAGGTTGTCACCAGGTCTGTTTTTATATCGAAAGTGG
194 CATTTTCGAAATTTCCTAAACCAAGTCCTAGGTTATCACCAGGTCCATTTTAATACCGAAAGTAG
* * * * * *
642487 GCATTTAGGATAGGTTCATCACCATTTCTAGTTTTTTTAGGTCCTTTAAGGTTAT
259 ACATTTAGGATAGGTTCATCACCATTTATAATCTTTTTAAGTCCTTTAAGGATAT
* * * * * * *
642542 CGGGATACTTTTACATCGAAGTTATACCCATAGGGGTATTTTTGTATTTTCTTAAAACCAAGTCC
1 CGGGATACTTTTACGTCGAAGGTATACCCATAAGGGCATTTTCGTATTTTCTTAGAACCAATTCC
* * ** *
642607 TAGGTTGTCACTGCGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTTATCACCATTTC
66 TAGGTTGTCACCGAGTTTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCACCATTTC
* * * *
642672 TAGTCTCTTTAGGTCCTTTAGGGTTATCAG-GGCACTTTTATGTCAAAAGTATACTCGCA-A-GG
131 TAGTCTTTTTAGGTCCTTTAGGGTT-GCAGTGACACTTTTACGTCAAAAGTATAC-C-CATAGGG
* * * * ** * *
642734 GCATTTT-TATAATTTCCTACAATCGATTCCTAGGTTATCGA-TGGGTCCATTTTAATGCCGAAT
193 GCATTTTCGA-AATTTCCTA-AACCAAGTCCTAGGTTATC-ACCAGGTCCATTTTAATACCGAAA
* *
642797 GTAGATATTTATGATAGGTTCATC-CC-TTCTATAATCCTTTTTAAGTCCTTT-AGAGATAT
255 GTAGACATTTAGGATAGGTTCATCACCATT-TATAAT-CTTTTTAAGTCCTTTAAG-GATAT
* * * *
642856 TGGGATACTTTCACGTCGAAGGTATACCTATAAGGGCATTTTGGTAATTTT-TTAGAACCAATTC
1 CGGGATACTTTTACGTCGAAGGTATACCCATAAGGGCATTTTCGT-ATTTTCTTAGAACCAATTC
** * * ** *
642920 CTAGGTCATCACCGAGTTTGCTTTTATACCGAAGGTAGGTGTTTAGGATAGGTTCATC-CCATCT
65 CTAGGTTGTCACCGAGTTTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCACCATTT
* * *
642984 ATAATTCTTTTTAAGTCCTTTAGG
130 CT-AGTCTTTTTAGGTCCTTTAGG
643008 AGTATCGGGT
Statistics
Matches: 381, Mismatches: 73, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
312 4 0.01
313 153 0.40
314 216 0.57
315 8 0.02
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (313 bp):
CGGGATACTTTTACGTCGAAGGTATACCCATAAGGGCATTTTCGTATTTTCTTAGAACCAATTCC
TAGGTTGTCACCGAGTTTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCACCATTTC
TAGTCTTTTTAGGTCCTTTAGGGTTGCAGTGACACTTTTACGTCAAAAGTATACCCATAGGGGCA
TTTTCGAAATTTCCTAAACCAAGTCCTAGGTTATCACCAGGTCCATTTTAATACCGAAAGTAGAC
ATTTAGGATAGGTTCATCACCATTTATAATCTTTTTAAGTCCTTTAAGGATAT
Found at i:646829 original size:21 final size:21
Alignment explanation
Indices: 646788--646831 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
646778 CTCTCCTTTA
* *
646788 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
646809 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
646830 TC
1 TC
646832 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:648656 original size:13 final size:13
Alignment explanation
Indices: 648638--648663 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
648628 ATAATCACCC
648638 TGTATCGATACAA
1 TGTATCGATACAA
648651 TGTATCGATACAA
1 TGTATCGATACAA
648664 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:650753 original size:15 final size:15
Alignment explanation
Indices: 650733--650763 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
650723 ATTTCGTTTG
*
650733 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
650748 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
650763 G
1 G
650764 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:652596 original size:21 final size:21
Alignment explanation
Indices: 652567--652611 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
652557 AAGTTTTCAT
*
652567 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
652587 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
652609 TTT
1 TTT
652612 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:654847 original size:13 final size:13
Alignment explanation
Indices: 654829--654854 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
654819 CAATTTTTTG
654829 TGTATCGATACAT
1 TGTATCGATACAT
654842 TGTATCGATACAT
1 TGTATCGATACAT
654855 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:664493 original size:17 final size:17
Alignment explanation
Indices: 664396--664498 Score: 85
Period size: 16 Copynumber: 6.2 Consensus size: 17
664386 ATTAATTTAG
664396 ATTTTAATATTTTAAATT
1 ATTTTAA-ATTTTAAATT
*
664414 ATTTTTTAAA--TCAAATT
1 A--TTTTAAATTTTAAATT
*
664431 ATTTT--ATGTTAAAATT
1 ATTTTAAAT-TTTAAATT
* *
664447 ATTTTAAGTTTT-AATC
1 ATTTTAAATTTTAAATT
664463 ATTTTAAA-TTTAAATT
1 ATTTTAAATTTTAAATT
664479 ATTTTAAATTTTAAA-T
1 ATTTTAAATTTTAAATT
664495 ATTT
1 ATTT
664499 ATTTTTTTGA
Statistics
Matches: 69, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
13 1 0.01
15 7 0.10
16 37 0.54
17 15 0.22
18 2 0.03
19 1 0.01
20 6 0.09
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTAAATTTTAAATT
Found at i:664528 original size:13 final size:14
Alignment explanation
Indices: 664504--664532 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
664494 TATTTATTTT
664504 TTTGATTATTTAAA
1 TTTGATTATTTAAA
664518 TTTGA-TATTTAAA
1 TTTGATTATTTAAA
664531 TT
1 TT
664533 ATTCAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTGATTATTTAAA
Found at i:665422 original size:25 final size:25
Alignment explanation
Indices: 665368--665424 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
665358 AAATATTAAA
*
665368 TATTATTATAACATAACGAAATAAT
1 TATTATTATAAAATAACGAAATAAT
* * *
665393 GATTATTATAAAAT-ACATAAATCAT
1 TATTATTATAAAATAAC-GAAATAAT
665418 TATTATT
1 TATTATT
665425 TTTTTGATAG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (25 bp):
TATTATTATAAAATAACGAAATAAT
Found at i:665732 original size:21 final size:21
Alignment explanation
Indices: 665706--665747 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
665696 ATCATTATAT
* *
665706 TTTTTAAACTATTATTTTAAA
1 TTTTTAAACAATTAATTTAAA
665727 TTTTTAAACAATTAATTTAAA
1 TTTTTAAACAATTAATTTAAA
665748 AAAGTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTTTAAACAATTAATTTAAA
Found at i:666234 original size:26 final size:28
Alignment explanation
Indices: 666177--666249 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 28
666167 TGTTATTGAC
* *
666177 TTTTTTAATTTGATCAAATTATATTAAA
1 TTTTTTAATTTAATCAAATTATATCAAA
666205 --TTTTAATTTAAAT-AAATTA-ATCAAA
1 TTTTTTAATTT-AATCAAATTATATCAAA
666230 TTTTTTAATTTTAGATCAAA
1 TTTTTTAA-TTTA-ATCAAA
666250 ACTACTAGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
25 5 0.14
26 15 0.41
27 9 0.24
28 5 0.14
29 3 0.08
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (28 bp):
TTTTTTAATTTAATCAAATTATATCAAA
Found at i:666864 original size:18 final size:18
Alignment explanation
Indices: 666824--666858 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
666814 TTTATCATAT
*
666824 TCATCTTCTTCATCTTCA
1 TCATCTTCTTCAACTTCA
*
666842 TCATCTTCTTTAACTTC
1 TCATCTTCTTCAACTTC
666859 TGCATCGATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.51
Consensus pattern (18 bp):
TCATCTTCTTCAACTTCA
Found at i:671725 original size:20 final size:20
Alignment explanation
Indices: 671694--671734 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
671684 AATAATATAT
*
671694 ATATATATATATATTCTATAAA
1 ATATACATAT-TATT-TATAAA
671716 ATATACATATTATTTATAA
1 ATATACATATTATTTATAA
671735 TAGTAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 9 0.50
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATACATATTATTTATAAA
Found at i:674341 original size:103 final size:102
Alignment explanation
Indices: 674151--674371 Score: 300
Period size: 103 Copynumber: 2.1 Consensus size: 102
674141 TTTATTCATG
* * * * *
674151 GGGATACTCCAACCCTAACCTTTTGAAGGGATACTTTAACCACGCTCTTCAAAATTTATCTAGAT
1 GGGATACTCCAACCCTAACCTTTCGAAAGGATACTTCAACCACGCTCTTCAAAATTTATCAACAT
*
674216 TTAAACTCCTCCTTTGTCAAAATTATTTGTTATCCAC
66 TTAAACTCCTCCTTTATCAAAATTATTTGTTATCCAC
* * *
674253 AGGGATACTCCAA-CCTCGACCTTTCGAAAGGATACTTCAGCCCCGCTCTTCAAAATTTATCAAC
1 -GGGATACTCCAACCCT-AACCTTTCGAAAGGATACTTCAACCACGCTCTTCAAAATTTATCAAC
* * *
674317 ATTTAAACTCTTCTTTTATTAAAATTATTTGTTATCCAC
64 ATTTAAACTCCTCCTTTATCAAAATTATTTGTTATCCAC
674356 GTGGATACTCCAACCC
1 G-GGATACTCCAACCC
674372 CATCTTCAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
102 4 0.04
103 97 0.94
104 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (102 bp):
GGGATACTCCAACCCTAACCTTTCGAAAGGATACTTCAACCACGCTCTTCAAAATTTATCAACAT
TTAAACTCCTCCTTTATCAAAATTATTTGTTATCCAC
Found at i:675858 original size:20 final size:22
Alignment explanation
Indices: 675816--675858 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
675806 ATTTAATCGG
* *
675816 TTTATTTTTAAAATATAATTAA
1 TTTATTTTTAAAATAAAAATAA
675838 TTTA-TTTT-AAATAAAAATAA
1 TTTATTTTTAAAATAAAAATAA
675858 T
1 T
675859 ATAATACATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 4 0.21
22 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTATTTTTAAAATAAAAATAA
Found at i:681408 original size:33 final size:32
Alignment explanation
Indices: 681366--681430 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 32
681356 CATTACAAGC
*
681366 TAATGTATCGATACATTTTGGGATGTATCGATA
1 TAATGTATCGATACATCTTGGG-TGTATCGATA
*
681399 TAATGTATCGATACATCTTGTGTGTATCGATA
1 TAATGTATCGATACATCTTGGGTGTATCGATA
681431 CAAACAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 10 0.33
33 20 0.67
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (32 bp):
TAATGTATCGATACATCTTGGGTGTATCGATA
Found at i:681533 original size:13 final size:13
Alignment explanation
Indices: 681515--681539 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
681505 CATTTGGTCG
681515 TGTATCGATACAA
1 TGTATCGATACAA
681528 TGTATCGATACA
1 TGTATCGATACA
681540 TTTGAAGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:681556 original size:33 final size:32
Alignment explanation
Indices: 681491--681559 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
681481 ATACATTCTT
* **
681491 TACAAGTATTGATACATTTGGTCGTGTATCGA
1 TACAAGTATCGATACATTTGAACGTGTATCGA
* *
681523 TACAATGTATCGATACATTTGAAGGTGTGTCGA
1 TACAA-GTATCGATACATTTGAACGTGTATCGA
681556 TACA
1 TACA
681560 TTTGAAGGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
32 5 0.16
33 26 0.84
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (32 bp):
TACAAGTATCGATACATTTGAACGTGTATCGA
Found at i:681557 original size:20 final size:20
Alignment explanation
Indices: 681528--681578 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
681518 ATCGATACAA
681528 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTTGAAGG
*
681548 TGTGTCGATACATTTGAAGG
1 TGTATCGATACATTTGAAGG
681568 TGTATCGATAC
1 TGTATCGATAC
681579 TTTTCAGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATTTGAAGG
Found at i:688803 original size:27 final size:28
Alignment explanation
Indices: 688750--688803 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
688740 TCCCATGATT
* *
688750 TTGGGATACATTTTTCACCATCTCTTTG
1 TTGGGATACATTTTTCACCAACGCTTTG
688778 TTGGGATACATTTTTC-CCAACGCTTT
1 TTGGGATACATTTTTCACCAACGCTTT
688804 CAGCCCATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (28 bp):
TTGGGATACATTTTTCACCAACGCTTTG
Found at i:690170 original size:13 final size:13
Alignment explanation
Indices: 690152--690177 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
690142 CATTTTGGGA
690152 TGTATCGATACAT
1 TGTATCGATACAT
690165 TGTATCGATACAT
1 TGTATCGATACAT
690178 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:690174 original size:33 final size:32
Alignment explanation
Indices: 690132--690195 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
690122 TACAAGCCAA
*
690132 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
690165 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
690196 AATAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:695495 original size:22 final size:23
Alignment explanation
Indices: 695443--695497 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
695433 TAAGATGGAT
695443 GAAATAAAATTAATTTTGATATC
1 GAAATAAAATTAATTTTGATATC
695466 GAAATAAAATTAATTTTGATATC
1 GAAATAAAATTAATTTTGATATC
695489 -AAATAAAAT
1 GAAATAAAAT
695498 AGGCTTTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 9 0.28
23 23 0.72
ACGTcount: A:0.53, C:0.04, G:0.07, T:0.36
Consensus pattern (23 bp):
GAAATAAAATTAATTTTGATATC
Found at i:695713 original size:14 final size:14
Alignment explanation
Indices: 695694--695722 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
695684 AAAATAAATA
695694 AGAAAATATTTACT
1 AGAAAATATTTACT
695708 AGAAAATATTTACT
1 AGAAAATATTTACT
695722 A
1 A
695723 CATGGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (14 bp):
AGAAAATATTTACT
Found at i:696909 original size:69 final size:69
Alignment explanation
Indices: 696815--696981 Score: 178
Period size: 69 Copynumber: 2.4 Consensus size: 69
696805 TAAATTGCCT
* ** * *
696815 TTAAAGTATGCCTTTGACATAAAAGTTCCTGG-CAACCCTAATGGACT-TCAAAAATAGTCAACA
1 TTAAAGTACGCCTTCAACATAAAAGTTCCTGGACAACCCTAAAGGACTCT-AAAAATAATCAACA
696878 TCCCC
65 TCCCC
* * *
696883 TCTAAAGTACGCCTTCAACATGAAAGTT-CTGGACGACCCTAAAGGACTCTAAAGATAATCAACA
1 T-TAAAGTACGCCTTCAACATAAAAGTTCCTGGACAACCCTAAAGGACTCTAAAAATAATCAACA
* *
696947 TTCTC
65 TCCCC
* * *
696952 TTAAAGTGCACTTTCAACATAAAAGTTCCT
1 TTAAAGTACGCCTTCAACATAAAAGTTCCT
696982 AGTGACCTTA
Statistics
Matches: 81, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
68 27 0.33
69 53 0.65
70 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (69 bp):
TTAAAGTACGCCTTCAACATAAAAGTTCCTGGACAACCCTAAAGGACTCTAAAAATAATCAACAT
CCCC
Found at i:700262 original size:29 final size:29
Alignment explanation
Indices: 700187--700267 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
700177 AATTAGAGAA
* *
700187 AAACCTTGAATCTAAAGGGATGACAAAGGCG
1 AAACCTTAAATC-AAA-AGATGACAAAGGCG
* *
700218 AAAGCTTAAATCAAAAGATGATAAAGGC-
1 AAACCTTAAATCAAAAGATGACAAAGGCG
*
700246 AAACCTTAAGTCGAAAAGATGA
1 AAACCTTAAATC-AAAAGATGA
700268 ACAAGGTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
28 10 0.23
29 20 0.47
30 3 0.07
31 10 0.23
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.17
Consensus pattern (29 bp):
AAACCTTAAATCAAAAGATGACAAAGGCG
Found at i:700282 original size:30 final size:28
Alignment explanation
Indices: 700186--700282 Score: 70
Period size: 29 Copynumber: 3.3 Consensus size: 28
700176 TAATTAGAGA
* * *
700186 AAAACCTTGAATCTAAAGGGATGACAAAGG
1 AAAACCTTAAATC-AAA-AGATGATAAAGG
* *
700216 CGAAAGCTTAAATCAAAAGATGATAAAGG
1 -AAAACCTTAAATCAAAAGATGATAAAGG
* *
700245 CAAACCTTAAGTCGAAAAGATGA-ACAAGG
1 AAAACCTTAAATC-AAAAGATGATA-AAGG
700274 TAAAACCTT
1 -AAAACCTT
700283 TTGTCAAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
28 11 0.20
29 23 0.43
30 10 0.19
31 10 0.19
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (28 bp):
AAAACCTTAAATCAAAAGATGATAAAGG
Found at i:700291 original size:29 final size:28
Alignment explanation
Indices: 700222--700307 Score: 75
Period size: 29 Copynumber: 3.0 Consensus size: 28
700212 AAGGCGAAAG
* *
700222 CTTAAATCAAAAGATGATAAAGGCAAAC
1 CTTAAGTCAAAAGATGATAAAGGAAAAC
700250 CTTAAGTCGAAAAGATGA-ACAAGGTAAAAC
1 CTTAAGTC-AAAAGATGATA-AAGG-AAAAC
** * *
700280 CTTTTGTCAAAATGATGATGAGGGAAAA
1 CTTAAGTCAAAA-GATGATAAAGGAAAA
700308 ATGTTCAGTC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
28 8 0.17
29 21 0.45
30 18 0.38
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.21
Consensus pattern (28 bp):
CTTAAGTCAAAAGATGATAAAGGAAAAC
Found at i:700381 original size:30 final size:30
Alignment explanation
Indices: 700347--700614 Score: 108
Period size: 30 Copynumber: 9.0 Consensus size: 30
700337 AACCTTTTGT
700347 TAAAAAAGATGACCAGGGTGAAAACTTTAG
1 TAAAAAAGATGACCAGGGTGAAAACTTTAG
* ** *
700377 TAAAAAAGATAACTTGGGTGAAAACTTTAAT
1 TAAAAAAGATGACCAGGGTGAAAACTTT-AG
* * * *
700408 TGAAAAAA-ATGACTAGAG-CAAAACCTTTAA
1 T-AAAAAAGATGACCAGGGTGAAAA-CTTTAG
* * *
700438 TTAAAAAGATGACAAAGGTG-AAAC-TT-G
1 TAAAAAAGATGACCAGGGTGAAAACTTTAG
* *
700465 --AAAAAGATGACCATGG-CAAAACCTTTAG
1 TAAAAAAGATGACCAGGGTGAAAA-CTTTAG
* * * * * **
700493 TCAGAAAGATGACTAGTGCGAAATGTTTAG
1 TAAAAAAGATGACCAGGGTGAAAACTTTAG
* *
700523 TCGAGAAA-ATGACCAGGGT-AAAACTTTTAG
1 T-AAAAAAGATGACCAGGGTGAAAAC-TTTAG
* ** * * * *
700553 TTAGGAAGATGATCAAGG-AAAAACCTTTTG
1 TAAAAAAGATGACCAGGGTGAAAA-CTTTAG
* *
700583 TTGAAAAAGATGACCAGGGTGAAACCTTTAG
1 -TAAAAAAGATGACCAGGGTGAAAACTTTAG
700614 T
1 T
700615 TGGAAAAATG
Statistics
Matches: 175, Mismatches: 44, Indels: 38
0.68 0.17 0.15
Matches are distributed among these distances:
25 17 0.10
26 1 0.01
27 2 0.01
28 3 0.02
29 13 0.07
30 90 0.51
31 40 0.23
32 9 0.05
ACGTcount: A:0.44, C:0.11, G:0.21, T:0.24
Consensus pattern (30 bp):
TAAAAAAGATGACCAGGGTGAAAACTTTAG
Found at i:700593 original size:31 final size:31
Alignment explanation
Indices: 700558--700626 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
700548 TTTAGTTAGG
*
700558 AAGATGATCAAGGAAAAACCTTTTGTTGAAA
1 AAGATGATCAAGGAAAAACCTTTAGTTGAAA
* * ** *
700589 AAGATGACCAGGGTGAAACCTTTAGTTGGAA
1 AAGATGATCAAGGAAAAACCTTTAGTTGAAA
700620 AA-ATGAT
1 AAGATGAT
700627 TAGGGCTAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (31 bp):
AAGATGATCAAGGAAAAACCTTTAGTTGAAA
Found at i:702171 original size:13 final size:14
Alignment explanation
Indices: 702144--702172 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
702134 AATTTTATCC
702144 TTTTCATTTGAATT
1 TTTTCATTTGAATT
702158 TTTTCATTTG-ATT
1 TTTTCATTTGAATT
702171 TT
1 TT
702173 CAATTAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.69
Consensus pattern (14 bp):
TTTTCATTTGAATT
Found at i:703376 original size:68 final size:70
Alignment explanation
Indices: 703299--703433 Score: 213
Period size: 70 Copynumber: 2.0 Consensus size: 70
703289 TGTTCATGTA
* *
703299 TTATTTATATATAT-TTTTA-GTTTTTTCATGTCTCCATAAATCCATA-TTTTTATGATCATCTA
1 TTATTTATATATATATTTTATGTTTTTTCATGTCACCA-AAATCCATATTTTTTATGATCATCCA
703361 TTTGTC
65 TTTGTC
*
703367 TTATTTATATATATATTTTATTTTTTTTCATGTCACCAAAATCCATATTTTTTATGATCATCCAT
1 TTATTTATATATATATTTTATGTTTTTTCATGTCACCAAAATCCATATTTTTTATGATCATCCAT
703432 TT
66 TT
703434 TTTTATTATT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
68 14 0.23
69 14 0.23
70 33 0.54
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (70 bp):
TTATTTATATATATATTTTATGTTTTTTCATGTCACCAAAATCCATATTTTTTATGATCATCCAT
TTGTC
Found at i:706479 original size:21 final size:21
Alignment explanation
Indices: 706450--706501 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
706440 TCAACAATTT
* *
706450 GTATTGATACAATAAGGCAAC
1 GTATCGATACAATAAGGAAAC
* *
706471 GTATCGATAC-ATAAGTAAAT
1 GTATCGATACAATAAGGAAAC
706491 GTATCGATACA
1 GTATCGATACA
706502 TGCCTGAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (21 bp):
GTATCGATACAATAAGGAAAC
Found at i:706677 original size:21 final size:21
Alignment explanation
Indices: 706634--706677 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
706624 TTTTGACAGA
* * **
706634 AATGTATCGATACATTTTTTT
1 AATGTACCGATACATCTAGTT
706655 AATGTACCGATACATCTAGTT
1 AATGTACCGATACATCTAGTT
706676 AA
1 AA
706678 ATTTGAACGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (21 bp):
AATGTACCGATACATCTAGTT
Found at i:707426 original size:20 final size:19
Alignment explanation
Indices: 707401--707472 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 19
707391 AACCCTTATT
707401 TGTATCGATACACA-TGCAGA
1 TGTATCGATACA-AGTGCA-A
707421 TGTATCGATACAAGTTGCAA
1 TGTATCGATACAAG-TGCAA
*
707441 TGTATCGATACAAGTTGTAA
1 TGTATCGATACAAG-TGCAA
*
707461 TGTATTGATACA
1 TGTATCGATACA
707473 CTATGAGAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 1 0.02
20 43 0.90
21 4 0.08
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAGTGCAA
Found at i:713611 original size:13 final size:13
Alignment explanation
Indices: 713593--713619 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
713583 CAAAGCAATT
713593 TGTATCGATACAA
1 TGTATCGATACAA
713606 TGTATCGATACAA
1 TGTATCGATACAA
713619 T
1 T
713620 TTTCATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:715911 original size:51 final size:51
Alignment explanation
Indices: 715838--715949 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 51
715828 AATGGGGTTA
* * * *
715838 GAGTATCCTCGATTATGGAAAATCGGTATTTTGGAAATAAAATCGGAGTTG
1 GAGTATCCCCAATTATGAAAAATCGGTATTTTAGAAATAAAATCGGAGTTG
* * *
715889 GAGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATCGGGGTTG
1 GAGTATCCCCAATTATGAAAAATCGGTATTTTAGAAATAAAATCGGAGTTG
715940 GAGTATCCCC
1 GAGTATCCCC
715950 TCAGAAATAG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (51 bp):
GAGTATCCCCAATTATGAAAAATCGGTATTTTAGAAATAAAATCGGAGTTG
Found at i:716038 original size:109 final size:108
Alignment explanation
Indices: 715915--716490 Score: 722
Period size: 109 Copynumber: 5.3 Consensus size: 108
715905 GAAAAATTGG
* * * * * *
715915 TATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAGAAATAGCGGGATTGGAGTATCCCCGA
1 TATTTTGGATATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGA
* *
715980 TCACATAACGGGGTTGGAGTACCCCCTGATTATTAAAAAATCAA
66 TGACATAACGGGGTTGGAGTACCCCC-GATTATGAAAAAATCAA
** * * *
716024 TATTTTGGATATAAAGTCGAGATTGGAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCGA
1 TATTTTGGATATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGA
* *
716089 TGACATAACGGGGTTGGAGCACCCTCGATTATGAAAAAATCAA
66 TGACATAACGGGGTTGGAGTACCCCCGATTATGAAAAAATCAA
* * * * *
716132 TATTTTAGATATAAAGCCGGGGTTAGAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCAA
1 TATTTTGGATATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGA
* * * *
716197 TGAAATAACGGGGTTAGAGTATTCCTCGATTATGAAAAAATCAA
66 TGACATAACGGGGTTGGAGTA-CCCCCGATTATGAAAAAATCAA
* * * *
716241 TATTCTGGATATAAAGCTGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGA
1 TATTTTGGATATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGA
**
716306 TGACATAATAGGGTTGGAGTATCCCCCGATTATGAAAAAATCAA
66 TGACATAACGGGGTTGGAGTA-CCCCCGATTATGAAAAAATCAA
* * * * * *
716350 TATTCTGGATATAAAGCTGGGGTTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCTGA
1 TATTTTGGATATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGA
* * **
716415 TGAAATAACGGGGTTGGAGTATCCCCGATTATG-AAAAATTGA
66 TGACATAACGGGGTTGGAGTACCCCCGATTATGAAAAAATCAA
* * * *
716457 TGTTTTGAAAATAAAACCAGGGTTGGAGTATCCC
1 TATTTTGGATATAAAACCGGGGTTGGAGTATCCC
716491 TGATTGCAAA
Statistics
Matches: 413, Mismatches: 53, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
107 34 0.08
108 104 0.25
109 275 0.67
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (108 bp):
TATTTTGGATATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGA
TGACATAACGGGGTTGGAGTACCCCCGATTATGAAAAAATCAA
Found at i:716096 original size:28 final size:28
Alignment explanation
Indices: 716046--716107 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
716036 AAAGTCGAGA
** *
716046 TTGGAGTATCCCCTCGGAAATAATGGGG
1 TTGGAGTATCCCCGAGGAAATAACGGGG
* *
716074 TTGGAGTATCCCCGATGACATAACGGGG
1 TTGGAGTATCCCCGAGGAAATAACGGGG
716102 TTGGAG
1 TTGGAG
716108 CACCCTCGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (28 bp):
TTGGAGTATCCCCGAGGAAATAACGGGG
Found at i:716167 original size:217 final size:216
Alignment explanation
Indices: 715915--716452 Score: 749
Period size: 217 Copynumber: 2.5 Consensus size: 216
715905 GAAAAATTGG
* ** *
715915 TATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAGAAATAGCGGGATTGGAGTATCCCCGA
1 TATTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCAGAAATAACGGG-TTGGAGTATCCCCGA
* * * *
715980 TCACATAACGGGGTTGGAGTACCCCCTGATTATTAAAAAATCAATATTTTGGATATAAAG-TCGA
65 TGAAATAACGGGGTTGGAGTA-CCCCTGATTATGAAAAAATCAATATTCTGGATATAAAGCT-GA
* * *
716044 GATTGGAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATGACATAACGGGGTTGGAGC
128 GATTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATGACATAACAGGGTTGGAGC
*
716109 A-CCCTCGATTATGAAAAAATCAA
193 ATCCCCCGATTATGAAAAAATCAA
* * * *
716132 TATTTTAGATATAAAGCCGGGGTTAGAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCAA
1 TATTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCAGAAATAA-CGGGTTGGAGTATCCCCGA
* ** *
716197 TGAAATAACGGGGTTAGAGTATTCCTCGATTATGAAAAAATCAATATTCTGGATATAAAGCTGGG
65 TGAAATAACGGGGTTGGAGTACCCCT-GATTATGAAAAAATCAATATTCTGGATATAAAGCTGAG
* * *
716262 GTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATGACATAATAGGGTTGGAGTA
129 ATTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATGACATAACAGGGTTGGAGCA
716327 TCCCCCGATTATGAAAAAATCAA
194 TCCCCCGATTATGAAAAAATCAA
* * * *
716350 TATTCTGGATATAAAGCTGGGGTTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCTGA
1 TATTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCAGAAATAACG-GGTTGGAGTATCCCCGA
716415 TGAAATAACGGGGTTGGAGTATCCCC-GATTATGAAAAA
65 TGAAATAACGGGGTTGGAGTA-CCCCTGATTATGAAAAA
716453 TTGATGTTTT
Statistics
Matches: 281, Mismatches: 34, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
216 3 0.01
217 176 0.63
218 100 0.36
219 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (216 bp):
TATTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCAGAAATAACGGGTTGGAGTATCCCCGAT
GAAATAACGGGGTTGGAGTACCCCTGATTATGAAAAAATCAATATTCTGGATATAAAGCTGAGAT
TGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATGACATAACAGGGTTGGAGCATC
CCCCGATTATGAAAAAATCAA
Found at i:716190 original size:28 final size:28
Alignment explanation
Indices: 716149--716218 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
716139 GATATAAAGC
**
716149 CGGGGTTAGAGTATCCCCTCGGAAATAA
1 CGGGGTTAGAGTATCCCCAAGGAAATAA
* * *
716177 TGGGGTTGGAGTATCCCCAATGAAATAA
1 CGGGGTTAGAGTATCCCCAAGGAAATAA
716205 CGGGGTTAGAGTAT
1 CGGGGTTAGAGTAT
716219 TCCTCGATTA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (28 bp):
CGGGGTTAGAGTATCCCCAAGGAAATAA
Found at i:716313 original size:28 final size:28
Alignment explanation
Indices: 716259--716331 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
716249 ATATAAAGCT
**
716259 GGGGTTGGAGTATCCCCTCGGAAATAAC
1 GGGGTTGGAGTATCCCCGAGGAAATAAC
* * * *
716287 GGGGTTAGAGTATCCCCGATGACATAAT
1 GGGGTTGGAGTATCCCCGAGGAAATAAC
*
716315 AGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
716332 CGATTATGAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.23
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCGAGGAAATAAC
Found at i:716410 original size:28 final size:29
Alignment explanation
Indices: 716370--716440 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 29
716360 ATAAAGCTGG
716370 GGTTGGAGTATCCCCTCA-GAAATAACGA
1 GGTTGGAGTATCCCCTCATGAAATAACGA
* *
716398 GGTTGGAGTAT-CCCTGATGAAATAACGG
1 GGTTGGAGTATCCCCTCATGAAATAACGA
716426 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
716441 GATTATGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
27 5 0.13
28 31 0.79
29 3 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (29 bp):
GGTTGGAGTATCCCCTCATGAAATAACGA
Found at i:716503 original size:51 final size:51
Alignment explanation
Indices: 716425--716544 Score: 152
Period size: 51 Copynumber: 2.4 Consensus size: 51
716415 TGAAATAACG
**
716425 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTT-GAAAATAAAACCA
1 GGGTTGGAGTATCCCCGATTACAAAAAATTGATGTTTTAG-AAATAAAACCA
* * * ***
716476 GGGTTGGAGTATCCCTGATTGCAAAAAATTGATGTTTTAGGAATAAAATTG
1 GGGTTGGAGTATCCCCGATTACAAAAAATTGATGTTTTAGAAATAAAACCA
716527 GGGTTGGAGTATCCCCGA
1 GGGTTGGAGTATCCCCGA
716545 GATGAAAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 58 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTACAAAAAATTGATGTTTTAGAAATAAAACCA
Found at i:718871 original size:20 final size:19
Alignment explanation
Indices: 718846--718919 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
718836 AAAATGCCTG
* *
718846 AATGTATTGATACATTGTAA
1 AATGTATCGATACAATG-AA
*
718866 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
*
718886 AATGTATTGATACAATGCAA
1 AATGTATCGATACAATG-AA
718906 AATGTATCGATACA
1 AATGTATCGATACA
718920 TCTGGGTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.96
21 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:718978 original size:20 final size:20
Alignment explanation
Indices: 718935--718991 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
718925 GTAAACCCAG
* *
718935 AATGTATCGATAAAATGAGC
1 AATGTATCGATAAAATAAAC
* *
718955 AATGTATCGATACAATAAAT
1 AATGTATCGATAAAATAAAC
*
718975 AATGCATCGATATAAAT
1 AATGTATCGATA-AAAT
718992 TGTGAAAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 27 0.90
21 3 0.10
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (20 bp):
AATGTATCGATAAAATAAAC
Found at i:719510 original size:42 final size:42
Alignment explanation
Indices: 719423--719670 Score: 226
Period size: 42 Copynumber: 6.0 Consensus size: 42
719413 CCCACTTTTT
* * * *
719423 TTGAGGACAAAGGAAAAG-AG-AATGAAATAG-GTCTTGCTCC
1 TTGAGGACAAAGGAAGAGAAGAAAAGGAA-AGTGTCCTGCTCC
* *
719463 TTGAGGAAAAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTCC
* * *
719505 TTGAGGACAAAGTGAA-A-AAGAGAATGAAA-TAGGTCTTGCTCC
1 TTGAGGACAAAG-GAAGAGAAGAAAAGGAAAGT--GTCCTGCTCC
* *
719547 TTGAGGACAAAGGAAGAGAAGAAAAGGAAAGTGTCATGCTTC
1 TTGAGGACAAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTCC
* * *
719589 TTGAGGACAAAGTGAA-A-AAGAGAATGAAA-TAGGCCTTGCTCC
1 TTGAGGACAAAG-GAAGAGAAGAAAAGGAAAGT-GTCC-TGCTCC
* *
719631 TTGAGGAAAAAGGAAGAGAAGAAAAGGAAAGTGTCTTGCT
1 TTGAGGACAAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCT
719671 TTTTAAGGAT
Statistics
Matches: 168, Mismatches: 25, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
40 18 0.11
41 32 0.19
42 88 0.52
43 28 0.17
44 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.29, T:0.19
Consensus pattern (42 bp):
TTGAGGACAAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTCC
Found at i:719550 original size:84 final size:84
Alignment explanation
Indices: 719423--719694 Score: 467
Period size: 84 Copynumber: 3.3 Consensus size: 84
719413 CCCACTTTTT
719423 TTGAGGACAAAG-G-AAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGAAAAAGGAAGAGAAGAA
1 TTGAGGACAAAGTGAAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGAAAAAGGAAGAGAAGAA
*
719486 AAGGAAAGTGTCCTGCTTC
66 AAGGAAAGTGTCATGCTTC
*
719505 TTGAGGACAAAGTGAAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGACAAAGGAAGAGAAGAA
1 TTGAGGACAAAGTGAAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGAAAAAGGAAGAGAAGAA
719570 AAGGAAAGTGTCATGCTTC
66 AAGGAAAGTGTCATGCTTC
*
719589 TTGAGGACAAAGTGAAAAAGAGAATGAAATAGGCCTTGCTCCTTGAGGAAAAAGGAAGAGAAGAA
1 TTGAGGACAAAGTGAAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGAAAAAGGAAGAGAAGAA
* *
719654 AAGGAAAGTGTCTTGCTTT
66 AAGGAAAGTGTCATGCTTC
* *
719673 TTAAGGATAAAGTGAAAAAGAG
1 TTGAGGACAAAGTGAAAAAGAG
719695 TACGTCCTAC
Statistics
Matches: 180, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
82 12 0.07
83 1 0.01
84 167 0.93
ACGTcount: A:0.43, C:0.10, G:0.29, T:0.19
Consensus pattern (84 bp):
TTGAGGACAAAGTGAAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGAAAAAGGAAGAGAAGAA
AAGGAAAGTGTCATGCTTC
Found at i:719800 original size:42 final size:43
Alignment explanation
Indices: 719695--719805 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 43
719685 TGAAAAAGAG
* * *
719695 TACGTCCTACTTTTTGAGGA-CAAAGGAAAAAAGGGAAACGAAA
1 TACGTCCTACTCTTTGAGGACCAAA-GAAAAAAGGAAAACAAAA
*
719738 TACGTCCTACTC-TTGTAGGACCAAAG-AAAGAGGAAAACAAAA
1 TACGTCCTACTCTTTG-AGGACCAAAGAAAAAAGGAAAACAAAA
* * *
719780 TGCGTCCTGCTCTTTGAGGACAAAAG
1 TACGTCCTACTCTTTGAGGACCAAAG
719806 GGCAAAGAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
42 35 0.60
43 19 0.33
44 4 0.07
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.20
Consensus pattern (43 bp):
TACGTCCTACTCTTTGAGGACCAAAGAAAAAAGGAAAACAAAA
Found at i:719982 original size:62 final size:61
Alignment explanation
Indices: 719831--720062 Score: 317
Period size: 61 Copynumber: 3.8 Consensus size: 61
719821 AAAGTGTTCT
* * *
719831 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCC
* * * * *
719892 TGCTCTTTGAGGGCTGTAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAAGAAAAGGCATCC
*
719954 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCATCC
1 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAAAGGCATCC
* * *
720015 TACTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAG
1 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
720063 GTATCCTGCT
Statistics
Matches: 152, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
59 1 0.01
60 33 0.22
61 64 0.42
62 54 0.36
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (61 bp):
TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCC
Found at i:720270 original size:215 final size:215
Alignment explanation
Indices: 719888--720297 Score: 544
Period size: 215 Copynumber: 1.9 Consensus size: 215
719878 AAGAAAAGGC
719888 GTCCTGCTCTTTGAGGGCTGTAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAAAAAAGCATC
1 GTCCTGCTCTTTGAGGGCTGTAAGGTGCCACCAACTTGTGTGGGCTTT-CAAAAAAAAAAGCATC
* * * *
719953 CTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTAC
65 CTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAAGCATCCTAC
* * **
720018 TCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGTATCCTGCTCTTTGAGGAC
130 TCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACATCCTGCTCTTTGAGGAC
720083 AAAAAGATGAAAGGAGAGAGA
195 AAAAAGATGAAAGGAGAGAGA
* * *
720104 GTCCTGCTCTTTG-GGGACTACG-AA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGC
1 GTCCTGCTCTTTGAGGG-CT--GTAAGGTGCCACCAACTTGTGTGGGCTTTCAAAA-AAAAAAGC
* * * * *
720165 GTCCTACTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTGTAGGCTTTAAAA-GAAAAAGCGTCT
62 ATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAAGCATCC
* * *
720228 TGCTCTTTGAGGATTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTG
127 TACTCTTTGAGGACT-G-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACATCCTGCTCTTTG
720293 AGGAC
190 AGGAC
720298 TGAAGAGTGC
Statistics
Matches: 169, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
213 21 0.12
214 33 0.20
215 73 0.43
216 39 0.23
217 2 0.01
218 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (215 bp):
GTCCTGCTCTTTGAGGGCTGTAAGGTGCCACCAACTTGTGTGGGCTTTCAAAAAAAAAAGCATCC
TACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAAAAGCATCCTACT
CTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACATCCTGCTCTTTGAGGACA
AAAAGATGAAAGGAGAGAGA
Found at i:720350 original size:116 final size:116
Alignment explanation
Indices: 720104--720446 Score: 428
Period size: 114 Copynumber: 2.9 Consensus size: 116
720094 AGGAGAGAGA
* *
720104 GTCCTGCTCTTTGGGGACTACG--AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
1 GTCCTACTCTTTGAGGACTA-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--AG-A--CGT
* *
720167 CCTACTCTTTGAGGACTGAAG-GTGCCACCAGCTTGTGTAGGCTTTAAAAGAAAAAGC
59 CCTGCTCTTTGAGGACTGAAGAGTGCCACCAACTTGTGTAGGCTTTAAAAGAAAAAGC
* * *
720224 GTCTTGCTCTTTGAGGATTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTC
1 GTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTC
* * * *
720289 TTTGAGGACTGAAGAGTGCCACCAATTTATGTGGGCTTTAAAAGAAAAAGT
66 TTTGAGGACTGAAGAGTGCCACCAACTTGTGTAGGCTTTAAAAGAAAAAGC
* * * *
720340 TTCCTACTCTTTGTGGACTAGAAAAATGCCACC-A-TTGTGTGGGCTTTAAAAGGCGTCCTGCTC
1 GTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTC
*
720403 TTTGAGGACT-AGGAAGTGCCACCAACTTGTGTAGGCTTTAAAAG
66 TTTGAGGACTGAAG-AGTGCCACCAACTTGTGTAGGCTTTAAAAG
720447 GCATCCTGCT
Statistics
Matches: 199, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
113 2 0.01
114 65 0.33
115 24 0.12
116 58 0.29
117 1 0.01
118 2 0.01
119 1 0.01
120 20 0.10
121 26 0.13
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (116 bp):
GTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTC
TTTGAGGACTGAAGAGTGCCACCAACTTGTGTAGGCTTTAAAAGAAAAAGC
Found at i:720468 original size:55 final size:55
Alignment explanation
Indices: 720104--720472 Score: 354
Period size: 55 Copynumber: 6.5 Consensus size: 55
720094 AGGAGAGAGA
*
720104 GTCCTGCTCTTTGGGGACTACG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGC
1 GTCCTGCTCTTTGAGGACTA-GAAAGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGC
* * * *
720165 GTCCTACTCTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTAGGCTTTAAAAGAAAAAGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-----GC
* * *
720224 GTCTTGCTCTTTGAGGATTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAC
1 GTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * *
720280 GTCCTGCTCTTTGAGGACT-GAAGAGTGCCACCAATTTATGTGGGCTTTAAAAGAAAAAGT
1 GTCCTGCTCTTTGAGGACTAGAA-AGTGCCACCAACTTGTGTGGGCTTTAAAAG-----GC
* * * *
720340 TTCCTACTCTTTGTGGACTAGAAAAATGCCACC-A-TTGTGTGGGCTTTAAAAGGC
1 GTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* *
720394 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
*
720449 ATCCTGCTCTTTGAGGACTA-AAAG
1 GTCCTGCTCTTTGAGGACTAGAAAG
720473 GGGAAAGGAG
Statistics
Matches: 258, Mismatches: 32, Indels: 43
0.77 0.10 0.13
Matches are distributed among these distances:
53 9 0.03
54 28 0.11
55 68 0.26
56 18 0.07
57 1 0.00
59 36 0.14
60 41 0.16
61 55 0.21
62 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
Found at i:721579 original size:8 final size:8
Alignment explanation
Indices: 721552--721590 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
721542 TTTTCTCTCT
721552 TTTTCTTTG
1 TTTT-TTTG
*
721561 TTTTGTT-
1 TTTTTTTG
721568 TTTTTTTG
1 TTTTTTTG
721576 TTTTTTTG
1 TTTTTTTG
721584 TTTTTTT
1 TTTTTTT
721591 AAAAAGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
7 6 0.22
8 17 0.63
9 4 0.15
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (8 bp):
TTTTTTTG
Found at i:721582 original size:18 final size:19
Alignment explanation
Indices: 721551--721590 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
721541 CTTTTCTCTC
721551 TTTTTCTTTGTTTTGTTTT
1 TTTTTCTTTGTTTTGTTTT
*
721570 TTTTTGTTT-TTTTGTTTT
1 TTTTTCTTTGTTTTGTTTT
721588 TTT
1 TTT
721591 AAAAAGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.88
Consensus pattern (19 bp):
TTTTTCTTTGTTTTGTTTT
Found at i:721587 original size:15 final size:15
Alignment explanation
Indices: 721551--721589 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
721541 CTTTTCTCTC
*
721551 TTTTTCTTTGTTTTG
1 TTTTTTTTTGTTTTG
721566 TTTTTTTTTGTTTT-
1 TTTTTTTTTGTTTTG
721580 TTTGTTTTTT
1 TTT-TTTTTT
721590 TAAAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (15 bp):
TTTTTTTTTGTTTTG
Found at i:734144 original size:51 final size:51
Alignment explanation
Indices: 734082--734197 Score: 144
Period size: 51 Copynumber: 2.3 Consensus size: 51
734072 AAATAACGAG
* * * *
734082 GTTAGAGTATCCCCAATTATGGAAAATCGGTATTTTGGAAATTAAATC-GAA
1 GTTAGAGTATCCCCAATTATGAAAAATCAGTATTTTAGAAATAAAATCAG-A
* * * *
734133 GTTAGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAATCAGG
1 GTTAGAGTATCCCCAATTATGAAAAATCAGTATTTTAGAAATAAAATCAGA
734184 GTTAGAGTATCCCC
1 GTTAGAGTATCCCC
734198 TCAGAGATAG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (51 bp):
GTTAGAGTATCCCCAATTATGAAAAATCAGTATTTTAGAAATAAAATCAGA
Found at i:734286 original size:109 final size:106
Alignment explanation
Indices: 734132--734700 Score: 644
Period size: 109 Copynumber: 5.3 Consensus size: 106
734122 ATTAAATCGA
* * * * * * *
734132 AGTTAGAGTATCCCCGATTGTG-AAAAATTAGTATTTTAGAAATAAAATCAGGGTTAGAGTATCC
1 AGTTGGAGTATCCCCGATTATGAAAAAATCAATATTTTGGATATAAAAGCAGGGTTAGAGTATCC
* * *
734196 CCTCAGAGATAGCGGGATTGGAGTATCCCCGATGACATAACAG
66 CCTC-GAAATAACGGGGTTGGAGTATCCCCGATGACATAAC-G
* * * *
734239 AGTTGAAGTACCCCTCGATTATGAAAAAATCAATATTTTGGATATAAAGGCAGGATTAGAGTATC
1 AGTTGGAGTATCCC-CGATTATGAAAAAATCAATATTTTGGATATAAAAGCAGGGTTAGAGTATC
* * *
734304 CCCTCGGAAACAATGGGGTTGGAGTATCCTCGATGACATAACG
65 CCCTC-GAAATAACGGGGTTGGAGTATCCCCGATGACATAACG
* * * *
734347 AGGTTGGAGCA-CCCTCGATTATGAAAAAATCAATATTTTAGATAT-AAAGCCGGGGTTGGAGTA
1 A-GTTGGAGTATCCC-CGATTATGAAAAAATCAATATTTTGGATATAAAAG-CAGGGTTAGAGTA
* * *
734410 TCCTCTCGGAAATAACGGGATTGGAGTATCCCCGATGAAATAACG
63 TCCCCTC-GAAATAACGGGGTTGGAGTATCCCCGATGACATAACG
* *
734455 AGGTTGGAGTATTCCCCGATTATGAAAAAATCAATATTCTGGATAT-AAAGCTGGGGTTAGAGTA
1 A-GTTGGAGTA-TCCCCGATTATGAAAAAATCAATATTTTGGATATAAAAGC-AGGGTTAGAGTA
*
734519 TCCCCTCGAAAATAATGGGGTTGGAGTATCCCCGATGACATAACGG
63 TCCCCTCG-AAATAACGGGGTTGGAGTATCCCCGATGACATAAC-G
* * * *
734565 GGTTGGAGTATCCTCCGATTAAGAAAAAATCAATATTCTGGATAT-AAAGCTAGGGTTGGAGTAT
1 AGTTGGAGTATCC-CCGATTATGAAAAAATCAATATTTTGGATATAAAAGC-AGGGTTAGAGTAT
* *
734629 CCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGG
64 CCCCTCG-AAATAACGGGGTTGGAGTATCCCCGATGACATAAC-G
*
734674 GGTTGGAGTATCCCCGATTATGAAAAA
1 AGTTGGAGTATCCCCGATTATGAAAAA
734701 TTGATGTTTT
Statistics
Matches: 405, Mismatches: 47, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
107 14 0.03
108 119 0.29
109 268 0.66
110 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (106 bp):
AGTTGGAGTATCCCCGATTATGAAAAAATCAATATTTTGGATATAAAAGCAGGGTTAGAGTATCC
CCTCGAAATAACGGGGTTGGAGTATCCCCGATGACATAACG
Found at i:734437 original size:28 final size:26
Alignment explanation
Indices: 734399--734473 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 26
734389 TATAAAGCCG
734399 GGGTTGGAGTATCCTCTCG-GAAATAAC
1 GGGTTGGAGTATCC-C-CGAGAAATAAC
734426 GGGATTGGAGTATCCCCGATGAAATAAC
1 GGG-TTGGAGTATCCCCGA-GAAATAAC
734454 GAGGTTGGAGTATTCCCCGA
1 G-GGTTGGAGTA-TCCCCGA
734474 TTATGAAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
26 2 0.05
27 4 0.09
28 28 0.65
29 9 0.21
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (26 bp):
GGGTTGGAGTATCCCCGAGAAATAAC
Found at i:734538 original size:217 final size:216
Alignment explanation
Indices: 734145--734700 Score: 751
Period size: 217 Copynumber: 2.6 Consensus size: 216
734135 TAGAGTATCC
* * * * ** * * * *
734145 CCGATTGTG-AAAAATTAGTATTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAGAGATAGC
1 CCGATTATGAAAAAATCAATATTTTAGATATAAAGCCAGGGTTGGAGTAT-CCCTCGGAAATAAC
* * *
734209 GGGATTGGAGTATCCCCGATGACATAAC-AGAGTTGAAGTACCCCTCGATTATGAAAAAATCAAT
65 GGGATTGGAGTATCCCCGATGAAATAACGAG-GTTGGAGTATCCC-CGATTATGAAAAAATCAAT
* * *
734273 ATTTTGGATATAAAGGCAGGATTAGAGTATCCCCTCGGAAACAATGGGGTTGGAGTATCCTCGAT
128 ATTCTGGATATAAAGGCAGGATTAGAGTATCCCCTCGAAAACAATGGGGTTGGAGTATCCCCGAT
734338 GACATAACGAGGTTGGAGCACCCT
193 GACATAACGAGGTTGGAGCACCCT
*
734362 -CGATTATGAAAAAATCAATATTTTAGATATAAAGCCGGGGTTGGAGTATCCTCTCGGAAATAAC
1 CCGATTATGAAAAAATCAATATTTTAGATATAAAGCCAGGGTTGGAGTATCC-CTCGGAAATAAC
734426 GGGATTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATTCCCCGATTATGAAAAAATCAATA
65 GGGATTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTA-TCCCCGATTATGAAAAAATCAATA
* * *
734491 TTCTGGATATAAA-GCTGGGGTTAGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCCCGAT
129 TTCTGGATATAAAGGC-AGGATTAGAGTATCCCCTCGAAAACAATGGGGTTGGAGTATCCCCGAT
* * *
734555 GACATAACGGGGTTGGAGTATCCT
193 GACATAACGAGGTTGGAGCACCCT
* * * * *
734579 CCGATTAAGAAAAAATCAATATTCTGGATATAAAGCTAGGGTTGGAGTATCCCTTCGAAAATAAC
1 CCGATTATGAAAAAATCAATATTTTAGATATAAAGCCAGGGTTGGAGTATCCC-TCGGAAATAAC
* *
734644 GGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAA
65 GGGATTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAA
734701 TTGATGTTTT
Statistics
Matches: 301, Mismatches: 31, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
216 11 0.04
217 191 0.63
218 99 0.33
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (216 bp):
CCGATTATGAAAAAATCAATATTTTAGATATAAAGCCAGGGTTGGAGTATCCCTCGGAAATAACG
GGATTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAAATCAATATT
CTGGATATAAAGGCAGGATTAGAGTATCCCCTCGAAAACAATGGGGTTGGAGTATCCCCGATGAC
ATAACGAGGTTGGAGCACCCT
Done.