genome.fa.s972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold972
Parameters: 2 7 7 80 10 50 1000
Length:  65854

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5999--6084	40	2.1	39	82	8	100	36	2	25	36	1.69
10807--10876	33	2.1	34	84	7	90	35	17	12	34	1.88
10905--10959	19	2.8	20	86	5	76	36	18	16	29	1.92
10947--10971	13	1.9	13	100	0	50	40	16	16	28	1.89
11730--11775	21	2.2	21	96	0	83	45	17	4	32	1.68
13401--13430	8	3.8	8	100	0	60	0	0	50	50	1.00
13479--13520	13	3.2	13	89	0	66	42	16	9	30	1.80
19731--19785	19	2.8	20	86	5	76	36	18	16	29	1.92
19773--19797	13	1.9	13	100	0	50	40	16	16	28	1.89
26770--26824	20	2.8	20	75	16	60	38	18	10	32	1.85
26853--26908	19	2.9	19	83	2	67	37	16	14	32	1.88
26893--26919	13	2.1	13	100	0	54	40	14	14	29	1.86
26877--26938	33	1.9	32	90	3	97	40	16	16	27	1.89
27492--27535	22	2.0	22	90	0	70	34	22	0	43	1.54
35625--35651	13	2.1	13	100	0	54	40	14	14	29	1.86
35604--35670	32	2.1	33	91	2	109	40	17	16	25	1.90
38014--38038	13	1.9	13	100	0	50	36	16	16	32	1.90
37991--38058	33	2.1	32	86	2	91	33	14	16	35	1.89
38923--38977	20	2.8	20	73	13	60	76	0	21	1	0.88
38922--38955	11	3.2	11	87	4	52	82	0	17	0	0.67
38927--38966	17	2.4	16	83	4	53	75	0	22	2	0.93
40353--40465	53	2.2	51	87	6	156	34	20	9	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40406--40844	81	5.4	82	80	6	444	30	24	9	35	1.86
40406--40855	164	2.8	161	84	3	553	30	24	8	36	1.86
40606--40898	81	3.6	81	72	12	224	27	23	10	37	1.89
49729--50175	79	5.7	79	83	4	530	28	26	11	33	1.91
49729--50175	157	2.8	156	86	3	610	28	26	11	33	1.91
57673--57712	21	1.9	21	85	10	55	32	20	7	40	1.80
57738--58164	58	7.3	58	76	6	287	26	9	16	47	1.77
58059--58149	29	3.1	29	65	22	73	27	8	15	48	1.74
57825--58166	174	2.0	175	84	2	447	26	9	16	47	1.76
57851--58188	116	2.9	116	76	6	335	26	10	16	46	1.79
57846--58213	58	6.3	58	73	9	230	26	10	16	46	1.79
57833--58210	174	2.2	175	82	4	433	26	9	16	46	1.78
58176--58244	34	2.0	34	88	5	104	27	13	14	44	1.82
58216--58327	59	1.9	58	87	1	161	26	8	13	50	1.70
62212--62260	25	2.0	25	84	8	64	46	6	0	46	1.27
62241--62292	21	2.4	22	76	17	56	50	1	1	46	1.23
62629--62673	21	2.1	22	84	12	58	42	0	0	57	0.98
63001--63055	22	2.5	21	79	5	56	50	3	1	43	1.30
63001--63045	21	2.1	22	83	4	56	53	2	2	42	1.25
63022--63052	16	1.9	16	93	0	53	58	0	0	41	0.98
63114--63156	15	2.8	16	78	7	52	51	6	2	39	1.42
63352--63423	24	3.0	25	76	17	82	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63363--63404	21	2.0	21	86	13	61	40	0	0	59	0.97

Tables:   1

The End!