genome.fa.s974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold974
Parameters: 2 7 7 80 10 50 1000
Length:  61019

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833--905	20	3.6	20	81	3	101	36	13	17	31	1.89
850--926	21	3.7	21	77	6	86	42	11	16	28	1.84
833--926	41	2.3	41	94	3	163	39	12	18	29	1.88
965--990	13	2.0	13	100	0	52	38	15	15	30	1.88
7495--7687	32	6.1	31	84	8	192	22	32	15	30	1.94
7626--7868	34	7.3	34	85	6	320	22	36	12	29	1.90
7627--7868	68	3.6	68	90	4	354	22	35	12	29	1.91
7626--7868	102	2.5	96	89	5	353	22	36	12	29	1.90
7855--7923	32	2.2	32	94	5	124	28	36	17	17	1.93
7921--8910	49	20.7	49	83	7	1068	25	26	17	31	1.97
7921--8910	141	6.9	141	87	6	1334	25	26	17	31	1.97
7916--8866	92	10.1	92	81	10	969	24	26	17	30	1.97
8662--8975	52	6.0	52	87	2	398	24	25	15	34	1.95
9601--9625	13	1.9	13	100	0	50	36	16	16	32	1.90
9614--9671	21	2.8	21	97	2	109	25	10	10	53	1.66
9710--9734	13	1.9	13	100	0	50	32	16	16	36	1.90
14958--15023	27	2.4	27	94	0	114	24	15	33	27	1.95
26778--26829	21	2.4	22	81	12	63	71	9	11	7	1.32
26794--26862	21	3.3	20	75	13	59	72	5	11	10	1.27
27748--28293	269	2.0	270	94	0	968	29	25	14	30	1.95
28439--28947	27	18.4	27	82	4	444	24	32	14	28	1.94
28439--28971	28	19.3	28	81	5	464	24	31	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28439--28969	55	9.6	55	80	6	484	25	31	14	28	1.95
28893--29164	28	9.4	28	86	5	321	30	29	18	21	1.97
28899--29304	32	13.5	32	85	3	317	29	29	19	21	1.98
29055--29380	96	3.4	96	81	4	338	29	28	17	23	1.97
35599--35639	21	2.0	21	85	9	57	39	12	9	39	1.76
35679--35749	20	3.6	19	77	7	70	39	16	14	29	1.88
35719--35855	53	2.6	53	96	1	247	37	18	17	27	1.93
35879--35952	10	7.3	10	71	19	64	22	28	10	37	1.88
37465--37518	20	2.7	21	82	8	67	35	12	18	33	1.89
39620--39688	33	2.1	33	94	0	120	23	23	21	31	1.98
40676--40717	13	3.2	13	96	0	75	45	16	9	28	1.79
41973--42034	9	6.9	9	77	14	65	1	14	1	82	0.83
41982--42032	16	3.1	15	82	17	66	0	13	1	84	0.71
42352--42393	11	4.0	11	78	12	52	64	2	4	28	1.26
42356--42393	20	1.9	20	100	0	76	63	2	5	28	1.30
44619--44658	21	1.9	21	84	0	53	25	15	5	55	1.60
46869--46933	33	2.0	33	82	11	80	35	18	10	35	1.86
46966--47019	19	2.8	20	88	2	74	37	16	14	31	1.89
49866--49928	33	1.9	32	87	3	90	30	15	15	38	1.89
49898--49942	19	2.3	19	88	3	63	28	15	20	35	1.93
58118--58159	22	1.9	22	90	0	66	40	4	33	21	1.74
58153--58229	22	3.3	22	65	28	59	40	5	22	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58145--58257	50	2.3	50	93	3	192	40	5	23	30	1.77
58802--58828	13	2.1	13	100	0	54	29	14	14	40	1.86
58812--58868	19	2.9	19	80	12	71	29	15	17	36	1.91
58899--58948	20	2.5	20	93	0	82	34	16	18	32	1.92

Tables:   1

The End!