genome.fa.s977.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold977
Parameters: 2 7 7 80 10 50 1000
Length:  58602

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1620--1663	21	2.0	22	82	8	54	65	9	2	22	1.32
2753--2778	13	2.0	13	100	0	52	30	15	15	38	1.88
2838--2910	20	3.6	20	81	3	101	31	19	13	35	1.91
2817--2910	41	2.3	41	96	0	170	30	18	12	38	1.88
2817--2892	21	3.7	21	78	3	91	30	17	11	40	1.85
3560--3592	16	2.1	16	94	0	57	21	18	21	39	1.93
3608--3836	110	2.1	110	94	0	395	30	23	13	32	1.93
4277--4349	20	3.5	20	86	3	83	38	12	16	32	1.86
7971--8036	33	2.0	33	85	5	89	40	13	13	31	1.84
8886--9317	49	9.3	48	75	10	317	31	18	24	25	1.97
8983--9317	87	3.7	87	81	9	377	30	17	25	26	1.98
8934--9201	136	2.0	136	81	1	322	31	19	25	24	1.98
8921--9317	185	2.1	184	91	1	634	31	17	24	25	1.97
9658--9714	14	4.0	14	77	4	60	21	5	14	59	1.54
11117--11149	13	2.5	13	100	0	66	39	15	9	36	1.79
14326--15128	34	23.8	34	86	4	1020	20	33	12	33	1.90
15170--15414	32	7.8	31	89	4	366	29	34	18	17	1.94
15170--15412	94	2.6	95	90	2	373	28	34	18	17	1.94
15460--15867	43	9.1	43	85	9	537	25	24	18	31	1.98
15407--15970	92	6.0	92	88	7	809	24	25	18	31	1.97
15756--15823	21	3.2	21	62	25	52	25	27	17	29	1.97
15821--16010	52	3.6	52	90	2	274	23	25	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15779--16019	104	2.4	96	78	12	277	24	24	18	32	1.97
16715--16815	32	3.1	32	95	1	175	34	10	17	36	1.85
16713--16808	13	5.7	18	71	28	86	33	11	17	37	1.86
16853--16877	13	1.9	13	100	0	50	32	16	16	36	1.90
16767--16950	86	2.2	85	82	10	216	35	16	15	33	1.90
16866--17014	52	2.9	50	88	6	208	34	18	16	30	1.93
24938--24962	13	1.9	13	100	0	50	32	16	16	36	1.90
24971--25099	52	2.5	52	89	0	213	36	17	17	27	1.93
30353--30436	19	4.7	19	74	18	81	30	11	19	38	1.88
30370--30394	13	1.9	13	100	0	50	24	16	20	40	1.91
30353--30413	32	1.9	32	93	0	104	27	13	18	40	1.87
30383--30438	20	2.8	20	83	2	69	33	10	17	37	1.85
31395--31434	9	4.3	9	90	3	53	32	2	10	55	1.47
32444--32471	14	2.0	14	100	0	56	28	7	28	35	1.84
35692--35754	21	3.0	21	77	11	58	55	1	20	22	1.52
43403--43433	13	2.4	13	88	0	53	35	12	16	35	1.87
43384--43448	33	2.0	33	84	6	87	35	16	12	35	1.87
43477--43548	19	3.7	19	83	10	76	37	18	15	29	1.91
44650--44694	18	2.5	18	92	0	72	28	11	37	22	1.88
45251--45292	22	2.0	22	95	4	77	42	4	11	40	1.63
45389--45499	33	3.4	33	94	0	186	37	15	12	34	1.85
45390--45486	20	5.6	19	65	30	65	39	15	12	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45443--45500	13	3.9	13	73	26	53	34	15	15	34	1.89
47044--47408	189	1.9	189	90	1	579	26	12	20	40	1.88
49805--49832	13	2.2	13	100	0	56	28	14	17	39	1.89
49818--49968	52	2.9	50	86	5	203	33	17	16	33	1.92
52088--52157	27	2.6	27	95	2	124	21	45	20	12	1.84
56856--56905	9	6.0	9	77	17	63	88	12	0	0	0.53
56854--56904	16	3.3	15	94	5	84	90	9	0	0	0.46
56854--56904	1	51.0	1	80	0	57	90	9	0	0	0.46
56856--56905	25	2.0	25	92	7	84	88	12	0	0	0.53
57246--57301	14	4.2	13	76	13	51	78	19	1	0	0.84
58114--58151	16	2.3	17	86	4	51	44	23	5	26	1.74
58240--58453	31	7.0	31	80	10	174	24	32	14	28	1.95
58247--58394	31	4.8	31	85	9	185	25	31	16	27	1.96
58375--58594	28	7.0	32	73	17	160	21	35	13	30	1.91
58339--58588	92	2.7	95	81	10	307	22	34	13	30	1.92
58243--58577	31	10.8	32	73	16	111	22	33	14	29	1.94

Tables:   1

The End!