genome.fa.s978.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold978
Parameters: 2 7 7 80 10 50 1000
Length:  66592

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3598--3625	13	2.2	13	100	0	56	39	17	14	28	1.89
3580--3645	33	2.0	33	88	5	98	39	13	16	30	1.87
4427--4767	42	8.0	42	75	13	293	39	12	26	21	1.89
4438--4767	87	3.8	87	89	2	504	38	12	26	22	1.90
4445--4767	172	1.9	172	90	2	524	38	12	26	22	1.90
4749--4978	122	1.9	124	86	3	331	30	19	25	25	1.98
4739--4984	61	4.0	63	81	6	290	31	18	25	24	1.97
4869--5155	151	1.9	151	85	7	398	26	19	26	27	1.99
5025--5388	57	6.4	55	85	6	478	26	20	25	26	1.99
5025--5385	112	3.2	112	91	2	562	26	21	25	27	1.99
6380--6409	10	3.1	10	95	4	53	0	0	6	93	0.35
6359--6424	16	4.0	16	80	5	60	0	12	4	83	0.79
18590--18913	79	4.2	76	81	6	348	33	15	25	25	1.95
18584--18913	154	2.1	156	83	6	411	33	15	25	25	1.95
18849--19015	51	3.3	50	83	8	194	32	12	25	28	1.92
21351--21375	13	1.9	13	100	0	50	40	8	16	36	1.77
26084--26430	191	1.8	189	87	1	523	29	10	24	35	1.89
27722--27903	92	2.0	90	91	2	292	28	19	15	36	1.92
30183--30461	139	2.0	139	100	0	558	37	16	2	42	1.63
33870--33905	2	18.0	2	94	0	63	50	2	0	47	1.15
34113--34145	16	2.0	17	94	5	59	48	0	0	51	1.00
34302--34681	53	7.1	53	73	13	203	31	15	1	52	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34304--34815	104	4.8	104	81	7	527	30	15	1	53	1.51
34300--34815	54	9.6	55	72	13	341	30	14	1	52	1.51
34305--34811	217	2.4	211	83	6	600	30	14	1	53	1.51
34805--34842	11	3.5	11	82	3	51	5	7	0	86	0.69
34805--34848	21	2.1	21	86	0	61	6	9	0	84	0.79
34805--34848	10	4.3	10	80	5	52	6	9	0	84	0.79
35979--36019	16	2.6	15	85	11	55	53	2	14	29	1.54
37126--37157	2	16.0	2	100	0	64	50	0	0	50	1.00
37313--37348	2	18.0	2	100	0	72	50	0	0	50	1.00
37640--37674	2	17.5	2	100	0	70	48	0	0	51	1.00
38431--38481	2	25.5	2	100	0	102	49	0	0	50	1.00
38760--38809	25	2.0	24	88	3	73	60	0	0	40	0.97
42401--42435	2	17.5	2	100	0	70	51	0	0	48	1.00
43121--43145	13	1.9	13	100	0	50	48	16	8	28	1.74
47615--47656	16	2.4	17	81	14	50	66	0	9	23	1.21
49057--49081	2	12.5	2	100	0	50	48	0	0	52	1.00
49558--49608	24	2.0	25	85	7	68	49	0	7	43	1.32
49728--49766	11	3.4	11	80	13	51	61	0	0	38	0.96
49817--49850	17	1.9	17	94	5	59	55	0	0	44	0.99
50114--50143	4	7.5	4	100	0	60	46	0	0	53	1.00
50727--50751	13	1.9	13	100	0	50	48	4	0	48	1.20
51203--51239	2	19.5	2	89	10	60	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53702--53753	25	2.1	25	85	3	70	65	3	0	30	1.10
54164--54197	18	1.9	18	88	5	52	29	2	5	61	1.34
54319--54372	25	2.1	25	82	6	63	59	1	0	38	1.08
54325--54372	25	2.0	24	88	11	73	56	0	0	43	0.99
54744--54803	6	9.8	6	75	13	52	51	1	0	46	1.10
54768--54809	19	2.3	18	83	4	57	57	4	0	38	1.20
54744--54803	13	4.9	12	72	15	52	51	1	0	46	1.10
56128--56152	13	1.9	13	100	0	50	20	0	16	64	1.30
58780--58853	21	3.6	20	71	20	55	45	0	0	54	1.00
59903--60108	50	4.1	50	91	1	324	29	21	18	30	1.97
64507--64699	50	3.9	50	93	2	300	29	21	19	30	1.97
65339--65396	12	5.0	11	74	17	55	46	0	0	53	1.00
65315--65397	29	3.1	26	72	22	73	43	0	0	56	0.99
65339--65396	23	2.5	22	78	15	64	46	0	0	53	1.00
65317--65402	35	2.3	38	80	17	108	44	0	0	55	0.99
65975--66026	19	2.7	20	74	22	56	71	13	5	9	1.30

Tables:   1

The End!