Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1546936
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 10 of 13
Found at i:1209834 original size:44 final size:44
Alignment explanation
Indices: 1209786--1210382 Score: 297
Period size: 44 Copynumber: 13.6 Consensus size: 44
1209776 TTTGTCTCTC
*
1209786 TTCTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
1 TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
* * * * * *
1209830 TTCTATTTGACCTATGGTTACCACCTTGGGT-AAATCCATCTC-C
1 TTCTATCTGACGTATGGTTACCACCTT-GGTCAAATTCTTTTCAT
* * * *
1209873 TTCTTGTCTGACGTATGGTTACCACCCTGGTCAAATTTTTTTTA-
1 TTC-TATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
* * *** * ***
1209917 TTCTGATTTGACGTATGATTACCACCCCAGCCAAA-TCTACCACACT
1 TTCT-ATCTGACGTATGGTTACCACCTTGGTCAAATTCT-TTTCA-T
* ** * *
1209963 TT-TATCTAATTTATGGTTACCACCCTGGTCAAATTCATTTCAT
1 TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
* * ** * * ***
1210006 TTCGATTTGACGTATGGTTACCATTTTGGTCAAGTCCGCCTC-T
1 TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
* * * * * *
1210049 CTCCTATGTGATGTATGGTTACTACCTTGGTCAATTTTTTTTCAT
1 -TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
* * * *
1210094 TT-TGATTTGACGTATTGTTACCATCTAGGTCAAATCTGCTTTT--T
1 TTCT-ATCTGACGTATGGTTACCACCTTGGTCAAAT-T-CTTTTCAT
* * *
1210138 TCCTATCTGACATATGGTTACCACCTTGGTCAAATTCTTTTTAT
1 TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
* * * * * ** *
1210182 TCCTATTTGACCTATGGTAACCACCTTGGTTAAA-TCTAGCTC-C
1 TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTCT-TTTCAT
* *
1210225 TTCTTATCTGACGTATGGTTACCACCCTGGTCAGAA-TCTCTTCAT
1 TTC-TATCTGACGTATGGTTACCACCTTGGTCA-AATTCTTTTCAT
* * * * * * * **
1210270 TCCGATTTGACATATGGTAACTACCTTGGTCAAATCCACCTT-A-
1 TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTC-TTTTCAT
* * * *
1210313 TTCTTGTCTAACGTATAGTTACCACCTTGGTCTAATTCTTTTCA-
1 TTC-TATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
* * *
1210357 TTCTTATTTGACGCACGGTTACCACC
1 TTC-TATCTGACGTATGGTTACCACC
1210383 CTAGACAAAT
Statistics
Matches: 402, Mismatches: 125, Indels: 52
0.69 0.22 0.09
Matches are distributed among these distances:
42 5 0.01
43 26 0.06
44 346 0.86
45 19 0.05
46 6 0.01
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (44 bp):
TTCTATCTGACGTATGGTTACCACCTTGGTCAAATTCTTTTCAT
Found at i:1209887 original size:88 final size:88
Alignment explanation
Indices: 1209795--1210412 Score: 477
Period size: 88 Copynumber: 7.0 Consensus size: 88
1209785 CTTCTATCTA
*
1209795 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCTATTTGACCTATGGTTACCACCTTGGG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCTATTTGACCTATGGTTACCACCTTAGG
*
1209860 TAAATCCATCTCCTTCTTGTCTG
66 TAAATCCACCTCCTTCTTGTCTG
* * * * * **
1209883 ACGTATGGTTACCACCCTGGTCAAATTTTTTTTA-TTCTGATTTGACGTATGATTACCACCCCAG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCT-ATTTGACCTATGGTTACCACCTTAG
** * * * *
1209947 CCAAATCTACCACACTT-TTATCTA
65 GTAAATCCACCTC-CTTCTTGTCTG
** * * * * * *
1209971 ATTTATGGTTACCACCCTGGTCAAATTCATTTCATTTCGATTTGACGTATGGTTACCA-TTTTGG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCTATTTGACCTATGGTTACCACCTTAGG
* * *
1210035 TCAAGTCCGCCTCTCTCCTATG--TG
66 T-AAATCCACCTC-CTTCT-TGTCTG
* * * * * * *
1210059 ATGTATGGTTACTACCTTGGTCAATTTTTTTTCATTT-TGATTTGACGTATTGTTACCATC-TAG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCT-ATTTGACCTATGGTTACCACCTTAG
** * ** * *
1210122 GTCAAATCTGCTTTTTTCCTATCTG
65 GT-AAATCCACCTCCTTCTTGTCTG
* * * *
1210147 ACATATGGTTACCACCTTGGTCAAATTCTTTTTATTCCTATTTGACCTATGGTAACCACCTT-GG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCTATTTGACCTATGGTTACCACCTTAGG
* * *
1210211 TTAAATCTAGCTCCTTCTTATCTG
66 -TAAATCCACCTCCTTCTTGTCTG
* * * * * * *
1210235 ACGTATGGTTACCACCCTGGTCAGAA-TCTCTTCATTCCGATTTGACATATGGTAACTACCTT-G
1 ACGTATGGTTACCACCTTGGTCA-AATTCTTTTCATTTCTATTTGACCTATGGTTACCACCTTAG
** *
1210298 GTCAAATCCACCTTATTCTTGTCTA
65 GT-AAATCCACCTCCTTCTTGTCTG
* * * *
1210323 ACGTATAGTTACCACCTTGGTCTAATTCTTTTCA-TTCTTATTTGACGC-ACGGTTACCACCCTA
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTC-TATTTGAC-CTATGGTTACCACCTTA
**
1210386 GACAAATCCACCTCCTTCTTGTCTG
64 GGTAAATCCACCTCCTTCTTGTCTG
1210411 AC
1 AC
1210413 ATGCCAGATT
Statistics
Matches: 411, Mismatches: 100, Indels: 38
0.75 0.18 0.07
Matches are distributed among these distances:
86 1 0.00
87 12 0.03
88 384 0.93
89 13 0.03
90 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (88 bp):
ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCTATTTGACCTATGGTTACCACCTTAGG
TAAATCCACCTCCTTCTTGTCTG
Found at i:1210279 original size:176 final size:174
Alignment explanation
Indices: 1209788--1211418 Score: 660
Period size: 176 Copynumber: 9.4 Consensus size: 174
1209778 TGTCTCTCTT
*
1209788 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCTATTTGACCTATGGTTACCA
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTATTTGACCTATGGTTACCA
* * * *
1209853 CCTTGGGTAAATCCATCTCCTTCTTGTCTGACGTATGGTTACCACCCTGGTCAAATTTTTTTTAT
66 CCTTGGTTAAAT-CAGCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAAA-TTTTTTCAT
* * **
1209918 TCTGATTTGACGTA-TGATTACCACCCCA-GCCAAATCTACCACACTTT-
129 TCTGATTTGACGTATTG-TTACCA-CCTAGGTCAAATCTA-C-CTTTTTC
** * * * * *
1209965 -TATCTAATTTATGGTTACCACCCTGGTCAAATTCATTTCATTTCGATTTGACGTATGGTTACCA
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTATTTGACCTATGGTTACCA
** * * * * * * * * *
1210029 TTTTGGTCAAGTCCGC-CTCTCTCCTATGTGATGTATGGTTACTACCTTGGTCAATTTTTTTTCA
66 CCTTGGTTAAATCAGCTC-CT-TCTTATCTGACGTATGGTTACCACCCTGGTCAA-ATTTTTTCA
* * * *
1210093 TTTTGATTTGACGTATTGTTACCATCTAGGTCAAATCTGCTTTTTTC
128 TTCTGATTTGACGTATTGTTACCACCTAGGTCAAATCTACCTTTTTC
* * * *
1210140 CTATCTGACATATGGTTACCACCTTGGTCAAATTCTTTTTATTCCTATTTGACCTATGGTAACCA
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTATTTGACCTATGGTTACCA
* *
1210205 CCTTGGTTAAATCTAGCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAGAATCTCTTCAT
66 CCTTGGTTAAATC-AGCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCA-AATTTTTTCAT
* * * * * * * *
1210270 TCCGATTTGACATATGGTAACTACCTTGGTCAAATCCACCTTATTC
129 TCTGATTTGACGTATTGTTACCACCTAGGTCAAATCTACCTTTTTC
* * * * * *
1210316 TTGTCTAACGTATAGTTACCACCTTGGTCTAATTCTTTTCATTCTTATTTGACGC-ACGGTTACC
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTATTTGAC-CTATGGTTACC
* * ** * *
1210380 ACCCTAGACAAATCCACCTCCTTCTTGTCTGAC--AT-G---CCA-----G----ATTCTTTTCA
65 ACCTTGGTTAAAT-CAGCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAAATT-TTTTCA
* * * * * * *
1210430 TT-TCGATTTGATGCT-TGGTTACGACCCT-GGTTAAATTTGTCTCTCTTT-
128 TTCT-GATTTGACG-TATTGTTACCA-CCTAGGTCAAATCT-AC-CTTTTTC
** * * * * * *
1210478 -TATCCCATGTATAGTTACCACCCTGGTCAAAATCTTTTCATT-CTGATTTGACGTATGATTACC
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCT-ATTTGACCTATGGTTACC
* * * * * * * * *
1210541 ACCCTGGTCAAATCTGCCTCTTTCCTAT-TAGACGTATGGTTACTACCTTGGTCACATTCTTTTT
65 ACCTTGGTTAAATCAG-CTCCTTCTTATCT-GACGTATGGTTACCACCCTGGTCAAATT-TTTTC
** * * * * * *
1210605 ATT-TCGATTTGATATATGGTTACCATCT-GCGTCAAATTTGCCTCTCTC
127 ATTCT-GATTTGACGTATTGTTACCACCTAG-GTCAAATCTACCTTTTTC
* * * * * ** * *
1210653 CTATCTGATGTATGGTTAGCACCCTGGTCAGATTCTTTTCATTCCTATTTGATGTATGGCTACAA
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTATTTGACCTATGGTTACCA
* * * * * * * *
1210718 CCCTAGTGAAATCCACCTCCTTCCTATCTGACGTATGGTTAGCACCCTGGTCAGAGTTTTTCATT
66 CCTTGGTTAAAT-CAGCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAAATTTTTTCATT
** * * * *
1210783 CCAATTGGACATA-TGTTTACCACCCT-GGTCAAATCCACCTCTTTC
130 CTGATTTGACGTATTG-TTACCA-CCTAGGTCAAATCTACCTTTTTC
* * * * * ***
1210828 ATATCTAACATATGGTTAACACCCTGGTCAGATTCTTTTCATTCCTATTTGATGAATGGTTACCA
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTATTTGACCTATGGTTACCA
* * * * * * * * *
1210893 CCCTAGTCAAATCCACCTCTTTTTTGTCTGAC--AT-GTTA-GA---T--TC---TTTTAT--TT
66 CCTTGGTTAAAT-CAGCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAAATTTTTTCATT
* * * * * * *
1210944 C-GATTCT-ACGCACTGGTTAACACCCTA-GTTAAATTTCCCTCTCTT-
130 CTGATT-TGACGTA-TTGTTACCA-CCTAGGTCAAATCTACCT-TTTTC
* * * * * *
1210989 CTATCTAACATATGGTTACCACCCTAGTCAAATTCTTTTCATT-CTGATTTGACGTATGATTAAC
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCT-ATTTGACCTATGGTTACC
* * * * ** * * *
1211053 A-CTCTAGTTAAATCTG--CCTCTCTCCATCTGACATATGGTTAAATACCTTAGTCATATTCTTT
65 ACCT-TGGTTAAATCAGCTCCT-TCT-TATCTGACGTATGGTT-ACCACCCTGGTCAAATT-TTT
* *** * * * * * *
1211115 TCATTTTGATTTGATACATGGTTACCATCTTGGCCAAATCTACCTCTCTC
125 TCATTCTGATTTGACGTATTGTTACCACCTAGGTCAAATCTACCTTTTTC
* * * * * * * * * * *
1211165 ATGTTTGACGTATGGCTACCACCCTGGTTAGATTCTTTTAATT-TTAGTTTGACGTATGGTTACC
1 CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTA-TTTGACCTATGGTTACC
* * * * * * * *
1211229 ACCTTGGTCAAATCTGCCTCTTTCCTATTTGACGTATGGTTGCCACCTTGGTCAGATTCTTTTCA
65 ACCTTGGTTAAATCAG-CTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAAATT-TTTTCA
* * * * * * *
1211294 TTTTGATTTGACATATGGTTGCCACCCAAGTTAAA-CT-CTCTTCTTTC
128 TTCTGATTTGACGTATTGTTACCACCTAGGTCAAATCTAC-CTT-TTTC
* * * ** * * * **
1211341 CTGTCTGATGTATGGTTATGA-CTCTGGTCAGATTCTTTTCATTTCGATTTGATATATGGTTACC
1 CTATCTAACGTATGGTTACCACCT-TGGTCAAATTCTTTTCATTCCTATTTGACCTATGGTTACC
* *
1211405 ACCCTAGTTAAATC
65 ACCTTGGTTAAATC
1211419 TGCCTTTCTC
Statistics
Matches: 1108, Mismatches: 261, Indels: 171
0.72 0.17 0.11
Matches are distributed among these distances:
158 2 0.00
159 2 0.00
160 21 0.02
161 182 0.16
162 10 0.01
163 13 0.01
164 2 0.00
165 2 0.00
166 2 0.00
167 2 0.00
168 2 0.00
170 5 0.00
171 1 0.00
172 5 0.00
173 5 0.00
174 16 0.01
175 140 0.13
176 655 0.59
177 36 0.03
178 3 0.00
179 2 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (174 bp):
CTATCTAACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTCCTATTTGACCTATGGTTACCA
CCTTGGTTAAATCAGCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAAATTTTTTCATTC
TGATTTGACGTATTGTTACCACCTAGGTCAAATCTACCTTTTTC
Found at i:1210583 original size:88 final size:87
Alignment explanation
Indices: 1210417--1210914 Score: 432
Period size: 88 Copynumber: 5.7 Consensus size: 87
1210407 TCTGACATGC
* * * ***
1210417 CAGATTCTTTTCATTTCGATTTGATGCT-TGGTTACGACCCTGGTTAAATTTGTCTCTCTTT--T
1 CAGATTCTTTTCA-TTCTATTTGATG-TATGGTTACCACCCTGGTCAAA-TCCAC-CTCTTTCCT
** * *
1210479 ATCCCATGTATAGTTACCACCCTGGT
62 ATCTGACGTATGGTTACCACCCTGGT
* * * * **
1210505 CAAAATCTTTTCATTCTGATTTGACGTATGATTACCACCCTGGTCAAATCTGCCTCTTTCCTAT-
1 CAGATTCTTTTCATTCT-ATTTGATGTATGGTTACCACCCTGGTCAAATCCACCTCTTTCCTATC
* *
1210569 TAGACGTATGGTTACTACCTTGGT
65 T-GACGTATGGTTACCACCCTGGT
* * * * * *** *
1210593 CACATTCTTTTTATTTCGATTTGATATATGGTTACCA-TCTGCGTCAAATTTGCCTCTCTCCTAT
1 CAGATTCTTTTCA-TTCTATTTGATGTATGGTTACCACCCTG-GTCAAATCCACCTCTTTCCTAT
* *
1210657 CTGATGTATGGTTAGCACCCTGGT
64 CTGACGTATGGTTACCACCCTGGT
* * * * *
1210681 CAGATTCTTTTCATTCCTATTTGATGTATGGCTACAACCCTAGTGAAATCCACCTCCTTCCTATC
1 CAGATTCTTTTCATT-CTATTTGATGTATGGTTACCACCCTGGTCAAATCCACCTCTTTCCTATC
*
1210746 TGACGTATGGTTAGCACCCTGGT
65 TGACGTATGGTTACCACCCTGGT
* * * ** * *
1210769 CAGAGT-TTTTCATTCCAATTGGACATATGTTTACCACCCTGGTCAAATCCACCTCTTTCATATC
1 CAGATTCTTTTCATT-CTATTTGATGTATGGTTACCACCCTGGTCAAATCCACCTCTTTCCTATC
* * *
1210833 TAACATATGGTTAACACCCTGGT
65 TGACGTATGGTTACCACCCTGGT
* *
1210856 CAGATTCTTTTCATTCCTATTTGATGAATGGTTACCACCCTAGTCAAATCCACCTCTTT
1 CAGATTCTTTTCATT-CTATTTGATGTATGGTTACCACCCTGGTCAAATCCACCTCTTT
1210915 TTTGTCTGAC
Statistics
Matches: 331, Mismatches: 68, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
86 6 0.02
87 83 0.25
88 236 0.71
89 6 0.02
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (87 bp):
CAGATTCTTTTCATTCTATTTGATGTATGGTTACCACCCTGGTCAAATCCACCTCTTTCCTATCT
GACGTATGGTTACCACCCTGGT
Found at i:1210699 original size:44 final size:44
Alignment explanation
Indices: 1210486--1210901 Score: 218
Period size: 44 Copynumber: 9.5 Consensus size: 44
1210476 TTTATCCCAT
* * * *
1210486 GTATAGTTACCACCCTGGTCAAAATCTTTTCATT-CTGATTTGAC
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCT-ATCTGAC
* * ** *
1210530 GTATGATTACCACCCTGGTCA-AATCTGCCTCTTTCCTAT-TAGAC
1 GTATGGTTACCACCCTGGTCAGATTCT-TTTCATTCCTATCT-GAC
* * * * * * * *
1210574 GTATGGTTACTACCTTGGTCACATTCTTTTTATTTCGATTTGAT
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATCTGAC
* * * ** *
1210618 ATATGGTTACCA-TCTGCGTCAAATT-TGCCTC-TCTCCTATCTGAT
1 GTATGGTTACCACCCTG-GTCAGATTCT-TTTCAT-TCCTATCTGAC
* * *
1210662 GTATGGTTAGCACCCTGGTCAGATTCTTTTCATTCCTATTTGAT
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATCTGAC
* * * * * * *** *
1210706 GTATGGCTACAACCCTAGTGAAATCCACCTCCTTCCTATCTGAC
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATCTGAC
* * *
1210750 GTATGGTTAGCACCCTGGTCAGAGT-TTTTCATTCCAAT-TGGAC
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATCT-GAC
* * * * *** * * *
1210793 ATATGTTTACCACCCTGGTCAAATCCACCTCTTTCATATCTAAC
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATCTGAC
* * * *
1210837 ATATGGTTAACACCCTGGTCAGATTCTTTTCATTCCTATTTGAT
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATCTGAC
* *
1210881 GAATGGTTACCACCCTAGTCA
1 GTATGGTTACCACCCTGGTCA
1210902 AATCCACCTC
Statistics
Matches: 269, Mismatches: 89, Indels: 28
0.70 0.23 0.07
Matches are distributed among these distances:
42 1 0.00
43 40 0.15
44 215 0.80
45 13 0.05
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (44 bp):
GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATCTGAC
Found at i:1210861 original size:175 final size:176
Alignment explanation
Indices: 1210491--1210911 Score: 483
Period size: 175 Copynumber: 2.4 Consensus size: 176
1210481 CCCATGTATA
* * * * * *
1210491 GTTACCACCCTGGTCAAAATCTTTTCATT-CTGATTTGACGTATGATTACCACCCTGGTCAAATC
1 GTTAACACCCTGGTCAGATTCTTTTCATTCCT-ATTTGATGTATGGTTACCACCCTAGTCAAATC
** * * * * * * * *
1210555 TGCCTCTTTCCTATTAGACGTATGGTTACTACCTTGGTCACATTCTTTTTATTTCGATTTGATAT
65 CACCTCCTTCCTATTAGACGTATGGTTACTACCCTGGTCACAGTCTTTTCATTCCAATTGGACAT
* *** * * **
1210620 ATGGTTACCATCTGCGTCAAATTTGCCTCTCTCCTATCTGATGTATG
130 ATGGTTACCACCTGCGTCAAATCCACCTCTCTCATATCTAACATATG
* * * *
1210667 GTTAGCACCCTGGTCAGATTCTTTTCATTCCTATTTGATGTATGGCTACAACCCTAGTGAAATCC
1 GTTAACACCCTGGTCAGATTCTTTTCATTCCTATTTGATGTATGGTTACCACCCTAGTCAAATCC
*
1210732 ACCTCCTTCCTATCT-GACGTATGGTTAGC-ACCCTGGTCAGAGT-TTTTCATTCCAATTGGACA
66 ACCTCCTTCCTAT-TAGACGTATGGTTA-CTACCCTGGTCACAGTCTTTTCATTCCAATTGGACA
* *
1210794 TATGTTTACCACCCTG-GTCAAATCCACCTCTTTCATATCTAACATATG
129 TATGGTTACCA-CCTGCGTCAAATCCACCTCTCTCATATCTAACATATG
*
1210842 GTTAACACCCTGGTCAGATTCTTTTCATTCCTATTTGATGAATGGTTACCACCCTAGTCAAATCC
1 GTTAACACCCTGGTCAGATTCTTTTCATTCCTATTTGATGTATGGTTACCACCCTAGTCAAATCC
1210907 ACCTC
66 ACCTC
1210912 TTTTTTGTCT
Statistics
Matches: 206, Mismatches: 35, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
175 113 0.55
176 89 0.43
177 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (176 bp):
GTTAACACCCTGGTCAGATTCTTTTCATTCCTATTTGATGTATGGTTACCACCCTAGTCAAATCC
ACCTCCTTCCTATTAGACGTATGGTTACTACCCTGGTCACAGTCTTTTCATTCCAATTGGACATA
TGGTTACCACCTGCGTCAAATCCACCTCTCTCATATCTAACATATG
Found at i:1211105 original size:88 final size:88
Alignment explanation
Indices: 1210960--1211128 Score: 232
Period size: 88 Copynumber: 1.9 Consensus size: 88
1210950 TACGCACTGG
* * *
1210960 TTAACACCCTAGTTAAATTTCCCTCTCTTCTATCTAACATATGGTTACCACCCTAGTCAAATTCT
1 TTAACACCCTAGTTAAATCTCCCTCTCTTCCATCTAACATATGGTTAACACCCTAGTCAAATTCT
1211025 TTTCATTCTGATTTGACGTATGA
66 TTTCATTCTGATTTGACGTATGA
* * * * * *
1211048 TTAACACTCTAGTTAAATCTGCCTCTC-TCCATCTGACATATGGTTAAATACCTTAGTCATATTC
1 TTAACACCCTAGTTAAATCTCCCTCTCTTCCATCTAACATATGGTT-AACACCCTAGTCAAATTC
*
1211112 TTTTCATTTTGATTTGA
65 TTTTCATTCTGATTTGA
1211129 TACATGGTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
87 16 0.23
88 54 0.77
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.41
Consensus pattern (88 bp):
TTAACACCCTAGTTAAATCTCCCTCTCTTCCATCTAACATATGGTTAACACCCTAGTCAAATTCT
TTTCATTCTGATTTGACGTATGA
Found at i:1211154 original size:88 final size:87
Alignment explanation
Indices: 1210999--1211491 Score: 318
Period size: 88 Copynumber: 5.6 Consensus size: 87
1210989 CTATCTAACA
* * * * * * * * **
1210999 TATGGTTACCACCCTAGTCAAATTCTTTTCATTCTGATTTGACGTATGATTAACA-CTCTAGTTA
1 TATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGATTTGACATATGGTTACCACCT-TGGCCA
* *
1211063 AATCTGCCTCTCTCCATCTGACA
65 AATCTGCCTCTCTCCATTTGACG
** * * * * *
1211086 TATGGTTAAATACCTTAGTCATATTCTTTTCATTTTGATTTGATACATGGTTACCATCTTGGCCA
1 TATGGTT-ACCACCTTGGTCAGATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTGGCCA
*
1211151 AATCTACCTCTCT-CATGTTTGACG
65 AATCTGCCTCTCTCCA--TTTGACG
* * * * * *
1211175 TATGGCTACCACCCTGGTTAGATTCTTTTAATTTT-AGTTTGACGTATGGTTACCACCTTGGTCA
1 TATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGA-TTTGACATATGGTTACCACCTTGGCCA
*
1211239 AATCTGCCTCTTTCCTATTTGACG
65 AATCTGCCTCTCTCC-ATTTGACG
* * *** **
1211263 TATGGTTGCCACCTTGGTCAGATTCTTTTCATTTTGATTTGACATATGGTTGCCACCCAAGTTAA
1 TATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTGGCCAA
* * *
1211328 ACTCT-CTTCTTTCC-TGTCTGATG
66 A-TCTGCCTCTCTCCAT-T-TGACG
** * * * * **
1211351 TATGGTTATGA-CTCTGGTCAGATTCTTTTCATTTCGATTTGATATATGGTTACCACCCTAGTTA
1 TATGGTTACCACCT-TGGTCAGATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTGGCCA
* * * *
1211415 AATCTGCCTTTCT-CTTGTCTAACA
65 AATCTGCCTCTCTCCAT-T-TGACG
* * * * * *
1211439 TATGGTTACTACTTTGAG-AAAATTCTTTTCATTTCGATTTGACATGTGGTTAC
1 TATGGTTACCACCTTG-GTCAGATTCTTTTCATTTTGATTTGACATATGGTTAC
1211492 TACCCTAGTC
Statistics
Matches: 326, Mismatches: 64, Indels: 31
0.77 0.15 0.07
Matches are distributed among these distances:
86 1 0.00
87 17 0.05
88 287 0.88
89 20 0.06
90 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (87 bp):
TATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTGGCCAA
ATCTGCCTCTCTCCATTTGACG
Found at i:1211260 original size:44 final size:43
Alignment explanation
Indices: 1211132--1212076 Score: 210
Period size: 44 Copynumber: 21.5 Consensus size: 43
1211122 GATTTGATAC
* * * * * *
1211132 ATGGTTACCATCTTGGCCAAATCTACCTCTCTCATGTTTGACGT
1 ATGGTTACCACCTTGGTCAAATCT-CTTCTTTCCTATTTGACGT
* * * * **
1211176 ATGGCTACCACCCTGGTTAGAT-TCTT-TTAATTTTAGTTTGACGT
1 ATGGTTACCACCTTGGTCAAATCTCTTCTT--TCCTA-TTTGACGT
*
1211220 ATGGTTACCACCTTGGTCAAATCTGCCTCTTTCCTATTTGACGT
1 ATGGTTACCACCTTGGTCAAATCT-CTTCTTTCCTATTTGACGT
* * * *
1211264 ATGGTTGCCACCTTGGTCAGATTCTTTTCATTT--TGATTTGACAT
1 ATGGTTACCACCTTGGTCA-AATCTCTTC-TTTCCT-ATTTGACGT
* *** * * * *
1211308 ATGGTTGCCACCCAAGTTAAACTCTCTTCTTTCCTGTCTGATGT
1 ATGGTTACCACCTTGGTCAAA-TCTCTTCTTTCCTATTTGACGT
** * * * **
1211352 ATGGTTATGA-CTCTGGTCAGATTCTTTTCATTT-CGATTTGATAT
1 ATGGTTACCACCT-TGGTCA-AATCTCTTC-TTTCCTATTTGACGT
* * * * *
1211396 ATGGTTACCACCCTAGTTAAATCTGC--CTTTCTCT-TGTCTAACAT
1 ATGGTTACCACCTTGGTCAAATCT-CTTCTTTC-CTAT-T-TGACGT
* * * * * *
1211440 ATGGTTACTACTTTGAG-AAAATTCTTTTCATTT-CGATTTGACAT
1 ATGGTTACCACCTTG-GTCAAA-TCTCTTC-TTTCCTATTTGACGT
* * * * * * * * *
1211484 GTGGTTACTACCCTAGTCAGATTTTTTTCATTCC-ATTTGACCT
1 ATGGTTACCACCTTGGTCA-AATCTCTTCTTTCCTATTTGACGT
* * * * * *
1211527 ATGGTTACCACCTTAGGT-AAATCCACCTCTTTCTTCTCTGATGT
1 ATGGTTACCACCTT-GGTCAAAT-CTCTTCTTTCCTATTTGACGT
* * * * * *
1211571 ATGGTTACCACCCTAGTCAGATTCTTTTCATT-CTGATTTTACGT
1 ATGGTTACCACCTTGGTCA-AATCTCTTCTTTCCT-ATTTGACGT
* ** ** * *
1211615 ATGATTACCACTCTT-GTCAAATCTACCACCCTCTTATCT-ATCGT
1 ATGGTTACCAC-CTTGGTCAAATCT-CTTCTTTCCTATTTGA-CGT
* *
1211659 ATGGTTACCACTTTGGTCAAAT-TCATTTCATTT-CGATTTGACGT
1 ATGGTTACCACCTTGGTCAAATCTC--TTC-TTTCCTATTTGACGT
* * * * * * * * *
1211703 ATGGTTACCATCTTGGTCTAAGCTGCCTATTTCTTGTGTGATGT
1 ATGGTTACCACCTTGGTCAAATCT-CTTCTTTCCTATTTGACGT
* * *
1211747 ATGGTTACTACCTTGGTCAAATTCTTTTCATTT-CGATTTGACGT
1 ATGGTTACCACCTTGGTCAAA-TCTCTTC-TTTCCTATTTGACGT
* * * *
1211791 ATGGTTACCATCTTGGTCAAATCTGCTTCTATCCTATCTAACGT
1 ATGGTTACCACCTTGGTCAAATCT-CTTCTTTCCTATTTGACGT
* * * *
1211835 ATGGTTACCACAC-TCGTCAAAT-TCTTTTTATTCCTATTTTACAT
1 ATGGTTACCAC-CTTGGTCAAATCTC-TTCT-TTCCTATTTGACGT
* ** * ** * * *
1211879 ATGGTTGCCACCCGGGTTAAATC-CATCTCCATCCTATCTAACAT
1 ATGGTTACCACCTTGGTCAAATCTC-T-TCTTTCCTATTTGACGT
* * * ***
1211923 ATGGTTACCACCCTGGTCAGATC-CTTTTAATTTGGATTTGACGT
1 ATGGTTACCACCTTGGTCAAATCTCTTCT--TTCCTATTTGACGT
* ** * * * * *
1211967 ATGGTAACTGCCTTGGTCAAATCCACCTCTTTCCTGTCTAACGT
1 ATGGTTACCACCTTGGTCAAAT-CTCTTCTTTCCTATTTGACGT
** ** * * * * *
1212011 ATGCCTACCACCCAGGTCTAATTCTTTTCATTCCTATTTGATGC
1 ATGGTTACCACCTTGGTC-AAATCTCTTCTTTCCTATTTGACGT
1212055 ATGGTTACCACCTT-GTCAAATC
1 ATGGTTACCACCTTGGTCAAATC
1212077 CACCTTCTTC
Statistics
Matches: 624, Mismatches: 214, Indels: 128
0.65 0.22 0.13
Matches are distributed among these distances:
41 4 0.01
42 13 0.02
43 71 0.11
44 480 0.77
45 43 0.07
46 8 0.01
47 5 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (43 bp):
ATGGTTACCACCTTGGTCAAATCTCTTCTTTCCTATTTGACGT
Found at i:1211667 original size:88 final size:89
Alignment explanation
Indices: 1211485--1212081 Score: 437
Period size: 88 Copynumber: 6.8 Consensus size: 89
1211475 ATTTGACATG
* * * * * *
1211485 TGGTTACTACCCTAGTCAGATTTTTTTCA-TTCCATTTGACCTATGGTTACCAC-CTTAGGT-AA
1 TGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACTCTT-GGTCAA
* * *
1211547 ATCCACCTCTTTCTTCTCTGAT-GTA
65 ATCTACCTCTATCTTATCT-ATCGTA
* * * *
1211572 TGGTTACCACCCTAGTCAGATTCTTTTCA-TTCTGATTTTACGTATGATTACCACTCTT-GTCAA
1 TGGTTACCACCCTGGTCAAATTCTTTTCATTTC-GATTTGACGTATGGTTACCACTCTTGGTCAA
* **
1211635 ATCTACCACCCTCTTATCTATCGTA
65 ATCTACCTCTATCTTATCTATCGTA
** * *
1211660 TGGTTACCACTTTGGTCAAATTCATTTCATTTCGATTTGACGTATGGTTACCA-TCTTGGTCTAA
1 TGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACTCTTGGTCAAA
* * * * * *
1211724 GCTGCCTATTTCTTGTGTGAT-GTA
66 TCTACCTCTATCTTATCT-ATCGTA
* *
1211748 TGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCA-TCTTGGTCAAA
1 TGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACTCTTGGTCAAA
* * * *
1211812 TCTGCTTCTATCCTATCTAACGTA
66 TCTACCTCTATCTTATCTATCGTA
* * * * * * * * ** *
1211836 TGGTTACCACACTCGTCAAATTCTTTTTATTCCTATTTTACATATGGTTGCCAC-CCGGGTTAAA
1 TGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACTCTTGGTCAAA
* * * * * *
1211900 TCCATCTCCATCCTATCTAACATA
66 TCTACCTCTATCTTATCTATCGTA
* * * * * **
1211924 TGGTTACCACCCTGGTCAGATCCTTTTAATTTGGATTTGACGTATGGTAACTGC-CTTGGTCAAA
1 TGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACTCTTGGTCAAA
* * * * *
1211988 TCCACCTCTTTCCTGTCTAACGTA
66 TCTACCTCTATCTTATCTATCGTA
** * * * * * *
1212012 TGCCTACCACCCAGGTCTAATTCTTTTCATTCCTATTTGATGCATGGTTACCAC-CTT-GTCAAA
1 TGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACTCTTGGTCAAA
*
1212075 TCCACCT
66 TCTACCT
1212082 TCTTCTTGCT
Statistics
Matches: 406, Mismatches: 95, Indels: 18
0.78 0.18 0.03
Matches are distributed among these distances:
87 52 0.13
88 346 0.85
89 8 0.02
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (89 bp):
TGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACTCTTGGTCAAA
TCTACCTCTATCTTATCTATCGTA
Found at i:1211773 original size:307 final size:307
Alignment explanation
Indices: 1211212--1211798 Score: 682
Period size: 307 Copynumber: 1.9 Consensus size: 307
1211202 TTAATTTTAG
* ** * * *
1211212 TTTGACGTATGGTTACCACCTTGGTCAAATCTGCCTCTTTCCTATTTGACGTATGGTTGCCACCT
1 TTTGACCTATGGTTACCACCTTGGTCAAATCCACCTCTTTCCTATCTGACGTATGGTTACCACCC
* * * * * ** **
1211277 TGGTCAGATTCTTTTCATTTTGATTTGACATATGGTTGCCACCCAAGTTAAACTCTCTTCTTTCC
66 TAGTCAGATTCTTTTCATTCTGATTTGACATATGATTACCACCCAAGTCAAACTCTCCACCCTCC
* ** * * *
1211342 TGTCTGATGTATGGTTATGACTCTGGTCAGATTCTTTTCATTTCGATTTGATATATGGTTACCAC
131 TATCTGATGTATGGTTACCACTCTGGTCAAATTCATTTCATTTCGATTTGACATATGGTTACCAC
* *
1211407 CCTAGTTAAATCTGCCTTTCTCTTGTCTAACATATGGTTACTACTTTGAGAAAATTCTTTTCATT
196 CCTAGTTAAAGCTGCCTTTCTCTTGTCTAACATATGGTTACTACCTTGAGAAAATTCTTTTCATT
*
1211472 TCGATTTGACATGTGGTTACTACCCTAGTCAGATTTTTTTCATTCCA
261 TCGATTTGACATATGGTTACTACCCTAGTCAGATTTTTTTCATTCCA
* * *
1211519 TTTGACCTATGGTTACCACCTTAGGT-AAATCCACCTCTTTCTTCTCTGATGTATGGTTACCACC
1 TTTGACCTATGGTTACCACCTT-GGTCAAATCCACCTCTTTCCTATCTGACGTATGGTTACCACC
* * * **
1211583 CTAGTCAGATTCTTTTCATTCTGATTTTACGTATGATTACCACTCTTGTCAAA-TCTACCACCCT
65 CTAGTCAGATTCTTTTCATTCTGATTTGACATATGATTACCACCCAAGTCAAACTCT-CCACCCT
* * *
1211647 CTTATCT-ATCGTATGGTTACCACTTTGGTCAAATTCATTTCATTTCGATTTGACGTATGGTTAC
129 CCTATCTGAT-GTATGGTTACCACTCTGGTCAAATTCATTTCATTTCGATTTGACATATGGTTAC
* * * * * ** *
1211711 CATCTTGGTCT-AAGCTGCCTATT-TCTTGTGTGATGTATGGTTACTACCTTG-GTCAAATTCTT
193 CACCCTAGT-TAAAGCTGCCT-TTCTCTTGTCTAACATATGGTTACTACCTTGAG-AAAATTCTT
*
1211773 TTCATTTCGATTTGACGTATGGTTAC
255 TTCATTTCGATTTGACATATGGTTAC
1211799 CATCTTGGTC
Statistics
Matches: 230, Mismatches: 44, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
306 6 0.03
307 218 0.95
308 6 0.03
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (307 bp):
TTTGACCTATGGTTACCACCTTGGTCAAATCCACCTCTTTCCTATCTGACGTATGGTTACCACCC
TAGTCAGATTCTTTTCATTCTGATTTGACATATGATTACCACCCAAGTCAAACTCTCCACCCTCC
TATCTGATGTATGGTTACCACTCTGGTCAAATTCATTTCATTTCGATTTGACATATGGTTACCAC
CCTAGTTAAAGCTGCCTTTCTCTTGTCTAACATATGGTTACTACCTTGAGAAAATTCTTTTCATT
TCGATTTGACATATGGTTACTACCCTAGTCAGATTTTTTTCATTCCA
Found at i:1212661 original size:424 final size:424
Alignment explanation
Indices: 1211745--1212735 Score: 1002
Period size: 424 Copynumber: 2.3 Consensus size: 424
1211735 CTTGTGTGAT
* *
1211745 GTATGGTTACTACCTTGGTCAAATTCTTTTCATT-TCGATTTGACGTATGGTTACCATCTTGGTC
1 GTATGGTTACTACCTTGGTCAAATTCTTTTCATTCT-GATTTGACATATGGTTACCACCTTGGTC
* * * * * *
1211809 AAATCTGCTTCTATCCTATCTAACGTATGGTTACCACACTCGTCAAATTCTTTT-TATTCCT-AT
65 AAATCTACCTCCATCCTATCTAACGTATGGTTACCACATTGGTCAAATTCTTTTCT-TT-TTGAT
* * * * *
1211872 TTTACATATGGTTGCCACCCGGGTTAAATCCATCTCCATCCTATCTAACATATGGTTACCACCCT
128 TTAACATATGGTTACCACCCGGGTGAAATCCATCTCCATCCTATCTAACATATCGTTACCACCCC
* * * * * *
1211937 GGTCAGATCCTTTTAATTTGGATTTGACGTATGGTAACTGCCTTGGTCAAATCCACCTCTTTCCT
193 GGTCAGATCCTTTTAATTTGAATTTCACCTATGGTAACTGCATTAGTCAAATCCACCTCCTTCCT
* *** * *
1212002 GTCTAACGTATGCCTACCACCCAGGTCTAATTCTTTTCATTCCTATTTGATGCATGGTTACCACC
258 GTCTAACGTATGCCTACAACCCAGGTCTAATTCTTTTCATTCCTATTTGACAAATAGTGACCACC
* * * * *
1212067 TTGTCAAATCCACCTTCTTCTTGCTTAACGTGTCAAAATCTTTTCATTTTGATCTGACATATAGT
323 TAGTCAAATCCACCTCCTTCGTGCTTAACATGTCAAAATCTATTCATTTTGATCTGACATATAGT
* *
1212132 TACCACCCACGTCAAACTCTTCTCTTTCCCATCTGAC
388 TACCACCCAAGTCAAACTCTTCTCTTTCCCATCTAAC
* * * * * * * ** * * *
1212169 GTACGGTTACCACATTTGTTAGATTTTTTTCATTCTGATTTGATTTAAGGTTACAACCCTT-TTC
1 GTATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGGTTACCA-CCTTGGTC
* * **
1212233 AAATCTACCTCCATCTTGTCTAACGTATGGTTACTGCATTGGT-AAATTTCTTTTCTTTTTGATT
65 AAATCTACCTCCATCCTATCTAACGTATGGTTACCACATTGGTCAAA-TTCTTTTCTTTTTGATT
* * * * * * * * *
1212297 TGACGTATGGTTACCATCTC-GGTGAAATCTGCCT-TTC-TCCTGTTTGACGTATCGTTACCACC
129 TAACATATGGTTACCA-CCCGGGTGAAATC--CATCTCCATCCTATCTAACATATCGTTACCACC
* * * * *
1212359 CCGGTTAGATTCTTTTCATTTTAATTTCACCTATGGTAACTGCATTAGTGAAATCCACCTCCTTC
191 CCGGTCAGATCCTTTTAATTTGAATTTCACCTATGGTAACTGCATTAGTCAAATCCACCTCCTTC
* ** **
1212424 CTGTCTGACGTATGGTTACAACCTTGGTCTAATTCTTTTCATTCCTATTTGACAAATAGTGACCA
256 CTGTCTAACGTATGCCTACAACCCAGGTCTAATTCTTTTCATTCCTATTTGACAAATAGTGACCA
* * * * * *
1212489 CCCTAGTTAAATCCACCTCCTTCGTG-TCTGACATGTCAGATTC-ATTCATTTTGATTTGACGTA
321 -CCTAGTCAAATCCACCTCCTTCGTGCT-TAACATGTCAAAATCTATTCATTTTGATCTGACATA
* * * *
1212552 TGGTTACCA-CCATAGTTAAA-TTTGTCTCTCTT-CTATCTAAC
384 TAGTTACCACCCA-AGTCAAACTCT-TCTCT-TTCCCATCTAAC
* *
1212593 GTATGGTTACTACCTTGGTCAAATTCTTGTCATTCTGATTTGACATATGATTACCACCTTGGTCA
1 GTATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGGTTACCACCTTGGTCA
* * * * *
1212658 AATCTACCTCTC-TCCTATTTGACGTATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGATTT
66 AATCTACCTC-CATCCTATCTAACGTATGGTTACCACATTGGTCAAATTCTTTTCTTTTTGATTT
1212722 AACATATGGTTACC
130 AACATATGGTTACC
1212736 TCCCAAGTCA
Statistics
Matches: 451, Mismatches: 100, Indels: 32
0.77 0.17 0.05
Matches are distributed among these distances:
423 13 0.03
424 390 0.86
425 46 0.10
426 2 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (424 bp):
GTATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGGTTACCACCTTGGTCA
AATCTACCTCCATCCTATCTAACGTATGGTTACCACATTGGTCAAATTCTTTTCTTTTTGATTTA
ACATATGGTTACCACCCGGGTGAAATCCATCTCCATCCTATCTAACATATCGTTACCACCCCGGT
CAGATCCTTTTAATTTGAATTTCACCTATGGTAACTGCATTAGTCAAATCCACCTCCTTCCTGTC
TAACGTATGCCTACAACCCAGGTCTAATTCTTTTCATTCCTATTTGACAAATAGTGACCACCTAG
TCAAATCCACCTCCTTCGTGCTTAACATGTCAAAATCTATTCATTTTGATCTGACATATAGTTAC
CACCCAAGTCAAACTCTTCTCTTTCCCATCTAAC
Found at i:1212683 original size:88 final size:87
Alignment explanation
Indices: 1212533--1213265 Score: 512
Period size: 88 Copynumber: 8.3 Consensus size: 87
1212523 GTCAGATTCA
* * * * * ** * * *
1212533 TTCATTTTGATTTGACGTATGGTTACCACCATAGTTAAATTTGTCTCTCTTCTATCTAACGTATG
1 TTCA-TTTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACATATG
*
1212598 GTTACTACCTTGGTCAAATTCTT
65 GTTACCACCTTGGTCAAATTCTT
* * * *
1212621 GTCATTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATTTGACGTATG
1 TTCATT-TGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACATATG
*
1212686 GTTACCACCTTGGTCAGATTCTT
65 GTTACCACCTTGGTCAAATTCTT
* * *** * ** *
1212709 TTCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCT-CCTCTTTGTTGTC-GAGCATA
1 TTCA-TTTGATTTGACATATGGTTACCACCTTGGTCAAA-TCTACCTCTCTCCTATCTGA-CATA
* * *
1212772 TGGTTACTACCCTT-GTCAGATTTTT
63 TGGTTACCA-CCTTGGTCAAATTCTT
* ** * ** * * ** *
1212797 TTCATTTTAATTTGATTTATGGTTGCCACCCAGCTAAAATCTACCTCTCTTTTGTCTGACATATG
1 TTCA-TTTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACATATG
* ** *
1212862 G-TACTACCTTGGAGAAATTTTT
65 GTTACCACCTTGGTCAAATTCTT
* * * * *
1212884 TTCATTTCGATTTGATATATGGTTACCATCTTGATCAAATTTGCCTCTCT-CT-TCCTTGACATA
1 TTCATTT-GATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTAT-C-TGACATA
* * **
1212947 TGGTCACCACCCTGGTCTGATTCTT
63 TGGTTACCACCTTGGTCAAATTCTT
* * * * * * * * * *
1212972 TTCATTACT-ATTTAACCTATGGCTACCACCTTGGCCAAATCCACCTC-CTTCTTAGCCGACGTG
1 TTCATT--TGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTC-TCCTATCTGACATA
* *
1213035 TGGTTACCACCCTGGTCAAATTATT
63 TGGTTACCACCTTGGTCAAATTCTT
* * * * * * *
1213060 TTCATTCTGATTTGACATATGATTACCAGCC-TGGTCAAATCAACCACCCTCCTGTCTAACTTAT
1 TTCATT-TGATTTGACATATGGTTACCA-CCTTGGTCAAATCTACCTCTCTCCTATCTGACATAT
*
1213124 CGTTACCACCTTGGTCAAATTCTT
64 GGTTACCACCTTGGTCAAATTCTT
* ** * * * * *
1213148 TTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATATG
1 TTCATTT-GATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACATATG
*
1213213 GTTACTACCTTGGTCAAATTCTT
65 GTTACCACCTTGGTCAAATTCTT
*
1213236 TTCATTTCGATTTGACGTATGGTTACCACC
1 TTCATTT-GATTTGACATATGGTTACCACC
1213266 CTAGACACAT
Statistics
Matches: 506, Mismatches: 117, Indels: 44
0.76 0.18 0.07
Matches are distributed among these distances:
85 1 0.00
86 9 0.02
87 70 0.14
88 409 0.81
89 16 0.03
90 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (87 bp):
TTCATTTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACATATGG
TTACCACCTTGGTCAAATTCTT
Found at i:1212730 original size:44 final size:44
Alignment explanation
Indices: 1212534--1213265 Score: 160
Period size: 44 Copynumber: 16.7 Consensus size: 44
1212524 TCAGATTCAT
* * * * * *
1212534 TCATTTTGATTTGACGTATGGTTACCACCATAGTTAAATT-TGTC
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCT-TC
* * * * *
1212578 TCTCTTCT-ATCTAACGTATGGTTACTACCTTGGTCAAATTCTTG
1 TC-ATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * *
1212622 TCATTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTC
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAAT-T-CTTC
* * * * *
1212668 TC-TCCT-ATTTGACGTATGGTTACCACCTTGGTCAGATTCTTT
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * *** * *
1212710 TCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCTCC
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * * * *
1212754 TC-TT-TG-TTGTCGAGCATATGGTTACTACCCTT-GTCAGATTTTTT
1 TCATTCTGATT-T--AACATATGGTTACCA-CCTTGGTCAAATTCTTC
* * * ** * ** * * *
1212798 TCATTTTAATTTGATTTATGGTTGCCACCCAGCTAAAATCTACCTC
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAAT-T-CTTC
* * * * ** * *
1212844 TC-TTTTG-TCTGACATATGG-TACTACCTTGGAGAAATTTTTT
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * * * *
1212885 TCATT-TCGATTTGATATATGGTTACCATCTTGATCAAATT-TGCC
1 TCATTCT-GATTTAACATATGGTTACCACCTTGGTCAAATTCT-TC
*** * * * ** *
1212929 TC-TCTCTTCCTTGACATATGGTCACCACCCTGGTCTGATTCTTT
1 TCAT-TCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * * * **
1212973 TCATTACT-ATTTAACCTATGGCTACCACCTTGGCCAAATCCACC
1 TCATT-CTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * **** * * * * *
1213017 TCCTTCTTAGCCGACGTGTGGTTACCACCCTGGTCAAATTATTT
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * **
1213061 TCATTCTGATTTGACATATGATTACCAGCC-TGGTCAAA-TCAAC
1 TCATTCTGATTTAACATATGGTTACCA-CCTTGGTCAAATTCTTC
* * * * *
1213104 -CACCCTCCTG-TCTAACTTATCGTTACCACCTTGGTCAAATTCTTT
1 TCA---TTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* * ** * * *
1213149 TCATT-TCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTC
1 TCATTCT-GATTTAACATATGGTTACCACCTTGGTCAAAT-T-CTTC
* * * * * *
1213195 TC-TCCT-ATGTGATATATGGTTACTACCTTGGTCAAATTCTTT
1 TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
* *
1213237 TCATT-TCGATTTGACGTATGGTTACCACC
1 TCATTCT-GATTTAACATATGGTTACCACC
1213266 CTAGACACAT
Statistics
Matches: 473, Mismatches: 172, Indels: 86
0.65 0.24 0.12
Matches are distributed among these distances:
41 6 0.01
42 19 0.04
43 42 0.09
44 356 0.75
45 32 0.07
46 16 0.03
47 2 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (44 bp):
TCATTCTGATTTAACATATGGTTACCACCTTGGTCAAATTCTTC
Found at i:1213345 original size:936 final size:935
Alignment explanation
Indices: 1212365--1216123 Score: 6335
Period size: 936 Copynumber: 4.0 Consensus size: 935
1212355 CACCCCGGTT
** *
1212365 AGATTCTTTTCATTTTAATTTCACCTATGGTAACTGCATTAGTGAAATCCACCTCCTTCCTGTCT
1 AGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCCTTAGTGAAATCCACCTCCTTCCTGTCT
* * **
1212430 GACGTATGGTTACAACCTTGGTCTAATTCTTTTCATTCCTATTTGACAAATAGTGACCACCCTAG
66 GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTATTTGACGCATAGTGACCACCCTAG
1212495 TTAAATCCACCTCCTTCGTGTCTGACATGTCAGATTCATTCATTTTGATTTGACGTATGGTTACC
131 TTAAATCCACCTCCTTCGTGTCTGACATGTCAGATTCATTCATTTTGATTTGACGTATGGTTACC
* * *
1212560 ACCATAGTTAAATTTGTCTCTCTTCTATCTAACGTATGGTTACTACCTTGGTCAAATTCTTGTCA
196 ACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATGGTTACTACCTTGGTCAAATTCTTTTCA
*
1212625 TTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATTTGACGTATGGTTA
261 TTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATGGTTA
1212690 CCACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCTCCT
326 CCACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCTCCT
* * * *
1212755 CTTTGTTGTCGAGCATATGGTTACTACCCTTGTCAGATTTTTTTCATTTTAATTTGATTTATGGT
391 CTTTCTTGTCGAGCGTATGGTTACTACCCTTGTCAGATTTTTTTCATTTCAATTTCATTTATGGT
* * *
1212820 TGCCACCCAGCTAAAATCTACCTCTCTTTTGTCTGACATATGG-TACTACCTTGGAGAAATTTTT
456 TGCCACCCAGTTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACTACCTTGGA-AAATTCTT
* * *
1212884 TTCATTTCGATTTGATATATGGTTACCATCTTGATCAAATTTGCCTCTCTCTTCCTTGACATATG
520 TTCATTTCGATTTGATATATGGTTACCATCTTGATCAAATCTACCTCTCTCTTCTTTGACATATG
* *
1212949 GTCACCACCCTGGTCTGATTCTTTTCATTACTATTTAACCTATGGCTACCACCTTGGCCAAATCC
585 GTTACCACCCTGGTCTGATTCTTTTCATTACTATTTAACCTATGGTTACCACCTTGGCCAAATCC
* * * * *
1213014 ACCTCCTTCTTAGCCGACGTGTGGTTACCACCCTGGTCAAATTATTTTCATTCTGATTTGACATA
650 ACCTCCTTCTTATCCGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTA
* *
1213079 TGATTACCAGCCTGGTCAAATCAACCACCCTCCTGTCTAACTTATCGTTACCACCTTGGTCAAAT
715 TGATTACCACCCTGGTCAAATCTACCA-CCTCCTGTCTAACTTATCGTTACCACCTTGGTCAAAT
1213144 TCTTTTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATA
779 TCTTTTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATA
1213209 TATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACAC
844 TATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACAC
*
1213274 ATCCACCTTTTTCCTATCTAACATGTC
909 ATCCACCTCTTTCCTATCTAACATGTC
*
1213301 AGATTCTTTTCATTTCGATTTCACCTATGGTAACTACCTTAGTGAAATCCACCTCCTTCCTGTCT
1 AGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCCTTAGTGAAATCCACCTCCTTCCTGTCT
*
1213366 GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTAATTGACGCATCA-TGACCACCCTA
66 GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTATTTGACGCAT-AGTGACCACCCTA
* * *
1213430 GTTAAATCTACCTCATTCGTGTCTGACATGTCAGATTCATTCTTTTTGATTTGACGTATGGTTAC
130 GTTAAATCCACCTCCTTCGTGTCTGACATGTCAGATTCATTCATTTTGATTTGACGTATGGTTAC
* * * *
1213495 CACCATAGTAAAATTTGTCTCCCTTCTATCTAACGTATGGTTACTACCTTGGTCAAATTCTTTTC
195 CACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATGGTTACTACCTTGGTCAAATTCTTTTC
*
1213560 ATTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCCCCTATCTGACGTATGGTT
260 ATTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATGGTT
* *
1213625 ACCACCGTGGTCAGATTCTTTTCATTTTGATTTAACATATGGTTACTTCCCAAGTCAAACTCTCC
325 ACCACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCTCC
* * * *
1213690 TCTTTCTTGTCGAGCGTACGGTTACTACCCTTGTCATATTTTTTTCATTTTAATTTGATTTATGG
390 TCTTTCTTGTCGAGCGTATGGTTACTACCCTTGTCAGATTTTTTTCATTTCAATTTCATTTATGG
* * ****
1213755 TTGCCACCCTGTTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACTACCATGGAAAAAAAAT
455 TTGCCACCCAGTTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACTACCTTGGAAAATTCTT
* * *
1213820 TTCATTTCGATTTGATGTATGGTTACCATCTTGATCAAATCTGCCTCTCTCTTGTTTGACATATG
520 TTCATTTCGATTTGATATATGGTTACCATCTTGATCAAATCTACCTCTCTCTTCTTTGACATATG
* * *
1213885 GTTACCACCCTAGTCTGATTCTTTTGATTACTATTTAACCTATGGTTACCACCTTGGGCAAATCC
585 GTTACCACCCTGGTCTGATTCTTTTCATTACTATTTAACCTATGGTTACCACCTTGGCCAAATCC
* *
1213950 ACCTCATTCTTATCCGACGTATGGTTACCACCCTGGTCAGATGT-TTTTCATTCTGATTTGATGT
650 ACCTCCTTCTTATCCGACGTATGGTTACCACCCTGGTCAGAT-TCTTTTCATTCTGATTTGACGT
* *
1214014 ATGATTACCACCCTGGTCAAATCTACCACCCTCCTGTCTAACTTATCATTACCACCTTGTTCAAA
714 ATGATTACCACCCTGGTCAAATCTACCA-CCTCCTGTCTAACTTATCGTTACCACCTTGGTCAAA
* * *
1214079 TTCTTTTCATTTCTATTTGACGTATGGTTACCATGGTCGTCTAATCTGCCTTTCTCCTATGTGAT
778 TTCTTTTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGAT
*
1214144 ATATGGTTACTACCTTGGTTAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACA
843 ATATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACA
1214209 CATCCACCTCTTTCCTATCTAACATGTC
908 CATCCACCTCTTTCCTATCTAACATGTC
*
1214237 AGATTCTTTTCATTTTGATTTCACCTATGGTAACTGCCTTAGTGAAATCCACCTCCTTCCTGTCT
1 AGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCCTTAGTGAAATCCACCTCCTTCCTGTCT
1214302 GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTATTTGACGCATAGTGACCA-CCTAG
66 GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTATTTGACGCATAGTGACCACCCTAG
1214366 TTAAATCCACCTCCTTCGTGTCTGACATGTCAGATTCATTCATTTTGATTTGACGTATGGTTACC
131 TTAAATCCACCTCCTTCGTGTCTGACATGTCAGATTCATTCATTTTGATTTGACGTATGGTTACC
1214431 ACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATGGTTACTACCTTGGTCAAATTCTTTTCA
196 ACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATGGTTACTACCTTGGTCAAATTCTTTTCA
1214496 TTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATGGTTA
261 TTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATGGTTA
* * ** *
1214561 CCACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATTGTTACCTCTCAAGTCAAGGTCTCAT
326 CCACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCTCCT
*
1214626 CTTTCTTGTCTAGCGTATGGTTACTACCCTTGTCAGATTTTTTTCATTTCAATTTCATTTATGGT
391 CTTTCTTGTCGAGCGTATGGTTACTACCCTTGTCAGATTTTTTTCATTTCAATTTCATTTATGGT
* * *
1214691 TGCCACCCTGTTAAAATCTACCTCTCTTTTGTCTGATGTATGGTTACTACCTTTGTAAAATTCTT
456 TGCCACCCAGTTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACTACC-TTGGAAAATTCTT
* *
1214756 TTCATTTCGATTTGATATATGGTTACCATCTTGATGAAATCTACCTCTCACTTCTTTGACATATG
520 TTCATTTCGATTTGATATATGGTTACCATCTTGATCAAATCTACCTCTCTCTTCTTTGACATATG
* * *
1214821 GTTACCACCCTGGTCTTATTCCTTTCATTACTATTTAACCTATGGTTACCACCTTGGGCAAATCC
585 GTTACCACCCTGGTCTGATTCTTTTCATTACTATTTAACCTATGGTTACCACCTTGGCCAAATCC
*
1214886 ACCTCCTTCTTATCCGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTA
650 ACCTCCTTCTTATCCGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTA
* *
1214951 TGATTACCACCCTAGTCAAAT-TACCACCTCCTGTCTAACTTATAGTTACCACCTTGGTCAAATT
715 TGATTACCACCCTGGTCAAATCTACCACCTCCTGTCTAACTTATCGTTACCACCTTGGTCAAATT
1215015 CTTTTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATAT
780 CTTTTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATAT
* *
1215080 ATGGTTACTACCTTGGTCAAATTCTTTTCATTTCTATTTGACGTATGGTTACCACTCTAGACACA
845 ATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACA
1215145 TCCACCTCTTTCCTATCTAACATGTC
910 TCCACCTCTTTCCTATCTAACATGTC
*
1215171 AGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCCTTAGTGAAATCCACCTCCTTCCTATCT
1 AGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCCTTAGTGAAATCCACCTCCTTCCTGTCT
* *
1215236 GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTATTTGATGTATAGTGACCACCCTAG
66 GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTATTTGACGCATAGTGACCACCCTAG
* * *
1215301 TTAAATCCACCTCCTTCGTGTTTAACATGTCAGATTCATTCATTTTAATTTGACGTATGGTTACC
131 TTAAATCCACCTCCTTCGTGTCTGACATGTCAGATTCATTCATTTTGATTTGACGTATGGTTACC
*
1215366 ACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATGGTTACTACCTTGGTTAAATTCTTTTCA
196 ACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATGGTTACTACCTTGGTCAAATTCTTTTCA
* *
1215431 TTCTGATTTGACGTATGATTACCATCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATGGTTA
261 TTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATGGTTA
* * *
1215496 ACACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATTGTTACCTCCCAAGTCAAGCTCTCCT
326 CCACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCTCCT
* *
1215561 CTTTCTTGTCTAGCGTATGGTTACTACCCTTGTCAGATTTTTTTCATTTCAATTTCATTTATTGT
391 CTTTCTTGTCGAGCGTATGGTTACTACCCTTGTCAGATTTTTTTCATTTCAATTTCATTTATGGT
1215626 TGCCACCCTA-TTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACTACCTTGGTAAAATTCT
456 TGCCACCC-AGTTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACTACCTTGG-AAAATTCT
* *
1215690 TTTCATTTCGATTTGATATATGGTTACCATCTTGATGAAATCTACCTCTCTCTTGTTTGACATAT
519 TTTCATTTCGATTTGATATATGGTTACCATCTTGATCAAATCTACCTCTCTCTTCTTTGACATAT
* * *
1215755 GGTTACCACCCTGGTCTAATTCTTTTCATTACTATTTAACCTATGGTTACCACCAT-GCGTAAAT
584 GGTTACCACCCTGGTCTGATTCTTTTCATTACTATTTAACCTATGGTTACCACCTTGGC-CAAAT
* *
1215819 CCACCTCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTTACG
648 CCACCTCCTTCTTATCCGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACG
* *
1215884 TATGATTACCACCCTGGTCAAATCTACCACCTCCTATCTAACTTATGGTTACCACCTTGGTCAAA
713 TATGATTACCACCCTGGTCAAATCTACCACCTCCTGTCTAACTTATCGTTACCACCTTGGTCAAA
*
1215949 TTCTTTTCATTTTGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGAT
778 TTCTTTTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGAT
* * *
1216014 ATATGGTTACCACTTTGGTCAAACTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACA
843 ATATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACA
* *
1216079 CATCCACCTTTTTCTTATCTAACATGTC
908 CATCCACCTCTTTCCTATCTAACATGTC
*
1216107 AGATTCTTTTAATTTCG
1 AGATTCTTTTCATTTCG
1216124 GTTTAATGCA
Statistics
Matches: 2665, Mismatches: 147, Indels: 22
0.94 0.05 0.01
Matches are distributed among these distances:
934 309 0.12
935 946 0.35
936 1397 0.52
937 13 0.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (935 bp):
AGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCCTTAGTGAAATCCACCTCCTTCCTGTCT
GACGTATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTATTTGACGCATAGTGACCACCCTAG
TTAAATCCACCTCCTTCGTGTCTGACATGTCAGATTCATTCATTTTGATTTGACGTATGGTTACC
ACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATGGTTACTACCTTGGTCAAATTCTTTTCA
TTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATGGTTA
CCACCTTGGTCAGATTCTTTTCATTTTGATTTAACATATGGTTACCTCCCAAGTCAAACTCTCCT
CTTTCTTGTCGAGCGTATGGTTACTACCCTTGTCAGATTTTTTTCATTTCAATTTCATTTATGGT
TGCCACCCAGTTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACTACCTTGGAAAATTCTTT
TCATTTCGATTTGATATATGGTTACCATCTTGATCAAATCTACCTCTCTCTTCTTTGACATATGG
TTACCACCCTGGTCTGATTCTTTTCATTACTATTTAACCTATGGTTACCACCTTGGCCAAATCCA
CCTCCTTCTTATCCGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTAT
GATTACCACCCTGGTCAAATCTACCACCTCCTGTCTAACTTATCGTTACCACCTTGGTCAAATTC
TTTTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATA
TGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACAT
CCACCTCTTTCCTATCTAACATGTC
Found at i:1213361 original size:73 final size:73
Alignment explanation
Indices: 1213225--1213361 Score: 175
Period size: 73 Copynumber: 1.9 Consensus size: 73
1213215 TACTACCTTG
* * * * **
1213225 GTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACATCCACCTTTTTCCTA
1 GTCAAATTCTTTTCATTTCGATTTCACCTATGGTAACCACCCTAGACAAATCCACCTCCTTCCTA
1213290 TCTAACAT
66 TCTAACAT
* * * **
1213298 GTCAGATTCTTTTCATTTCGATTTCACCTATGGTAACTACCTTAGTGAAATCCACCTCCTTCCT
1 GTCAAATTCTTTTCATTTCGATTTCACCTATGGTAACCACCCTAGACAAATCCACCTCCTTCCT
1213362 GTCTGACGTA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
73 53 1.00
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.39
Consensus pattern (73 bp):
GTCAAATTCTTTTCATTTCGATTTCACCTATGGTAACCACCCTAGACAAATCCACCTCCTTCCTA
TCTAACAT
Found at i:1213563 original size:160 final size:161
Alignment explanation
Indices: 1213209--1213572 Score: 381
Period size: 161 Copynumber: 2.3 Consensus size: 161
1213199 CTATGTGATA
* * * ** * *
1213209 TATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACAC
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCCGAATTGACGCATCATGACCACCCTAGACAA
** * *
1213274 ATCCACCTTTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTTCACCTATGGTAACTACC
66 ATCCACCTCATTCCTATCTAACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCACC
* * * *
1213339 TTAGTGAAATCCACCTCCTTCCTGTCTGACG
131 ATAGTAAAATCCACCTCCTTCCTATCTAACG
* * * * **
1213370 TATGGTTACCACCCTGGTCTAATTCTTTTCATTCCTAATTGACGCATCATGACCACCCTAGTTAA
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCCGAATTGACGCATCATGACCACCCTAGACAA
* * * * * * * * *
1213435 ATCTACCTCATTCGTGTCTGACATGTCAGATTC-ATTCTTTTTGATTTGACGTATGGTTACCACC
66 ATCCACCTCATTCCTATCTAACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCACC
****
1213499 ATAGTAAAATTTGTCTCCCTT-CTATCTAACG
131 ATAGTAAAATCCACCT-CCTTCCTATCTAACG
* *
1213530 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGAC
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCCGAATTGAC
1213573 ATATGATTAC
Statistics
Matches: 162, Mismatches: 40, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
160 79 0.49
161 83 0.51
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (161 bp):
TATGGTTACTACCTTGGTCAAATTCTTTTCATTCCGAATTGACGCATCATGACCACCCTAGACAA
ATCCACCTCATTCCTATCTAACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCACC
ATAGTAAAATCCACCTCCTTCCTATCTAACG
Found at i:1213584 original size:88 final size:88
Alignment explanation
Indices: 1213476--1214201 Score: 276
Period size: 88 Copynumber: 8.3 Consensus size: 88
1213466 TCATTCTTTT
* **
1213476 TGATTTGACGTATGGTTACCACCATAGTAAAAT-T-TGTCTCCCTTCTATCTAACGTATGGTTAC
1 TGATTTGACATATGGTTACCACCATAGTAAAATCTACCTCTCCC--CTATCTAACGTATGGTTAC
* *
1213539 TACCTTGGTCAAATTCTTTTCATTC
64 CACCGTGGTCAAATTCTTTTCATTC
* * * * *
1213564 TGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCCCCTATCTGACGTATGGTTACCA
1 TGATTTGACATATGGTTACCACCATAGTAAAATCTACCTCTCCCCTATCTAACGTATGGTTACCA
* *
1213629 CCGTGGTCAGATTCTTTTCATTT
66 CCGTGGTCAAATTCTTTTCATTC
* * ** * * * * *
1213652 TGATTTAACATATGGTTACTTC-CCA-AGTCAAACTCT-CCTCTTTCTTGTCGAGCGTACGGTTA
1 TGATTTGACATATGGTTAC--CACCATAGT-AAAATCTACCTCTCCCCTATCTAACGTATGGTTA
* * * * * *
1213714 CTACCCTTGTCATATTTTTTTCATTT
63 CCACCGTGGTCAAATTCTTTTCATTC
* ** * * *** * * *
1213740 TAATTTGATTTATGGTTGCCACCCT-GTTAAAATCTACCTCTCTTTTGTCTGACGTATGGTTACT
1 TGATTTGACATATGGTTACCACCATAG-TAAAATCTACCTCTCCCCTATCTAACGTATGGTTACC
* * ****
1213804 ACCATGG-AAAAAAAATTTCATT-
65 ACCGTGGTCAAATTCTTTTCATTC
** * * * * * * * * * *
1213826 TCGATTTGATGTATGGTTACCATC-TTGATCAAATCTGCCTCTCTCTTGTTTGACATATGGTTAC
1 T-GATTTGACATATGGTTACCACCATAG-TAAAATCTACCTCTCCCCTATCTAACGTATGGTTAC
* * ** *
1213890 CACCCTAGTCTGATTCTTTTGATTAC
64 CACCGTGGTCAAATTCTTTTCATT-C
* * * * ** * * * **
1213916 T-ATTTAACCTATGGTTACCACCTTGGGCAAATCCACCTCAT-TCTTATCCGACGTATGGTTACC
1 TGATTTGACATATGGTTACCACCATAGTAAAATCTACCTC-TCCCCTATCTAACGTATGGTTACC
* *
1213979 ACCCTGGTCAGATGT-TTTTCATTC
65 ACCGTGGTCAAAT-TCTTTTCATTC
** * * * * * * * **
1214003 TGATTTGATGTATGATTACCACCCTGGTCAAATCTACCAC-CCTCCTGTCTAACTTATCATTACC
1 TGATTTGACATATGGTTACCACCATAGTAAAATCTACCTCTCC-CCTATCTAACGTATGGTTACC
* *
1214067 ACCTTGTTCAAATTCTTTTCATTTC
65 ACCGTGGTCAAATTCTTTTCA-TTC
* *** * ** * * * * * ** *
1214092 T-ATTTGACGTATGGTTACCATGGTCGTCTAATCTGCCTTTCTCCTATGTGATATATGGTTACTA
1 TGATTTGACATATGGTTACCACCATAGTAAAATCTACCTCTCCCCTATCTAACGTATGGTTACCA
* *
1214156 CCTTGGTTAAATTCTTTTCATT-
66 CCGTGGTCAAATTCTTTTCATTC
*
1214178 TCGATTTGACGTATGGTTACCACC
1 T-GATTTGACATATGGTTACCACC
1214202 CTAGACACAT
Statistics
Matches: 483, Mismatches: 130, Indels: 50
0.73 0.20 0.08
Matches are distributed among these distances:
86 4 0.01
87 78 0.16
88 376 0.78
89 17 0.04
90 8 0.02
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (88 bp):
TGATTTGACATATGGTTACCACCATAGTAAAATCTACCTCTCCCCTATCTAACGTATGGTTACCA
CCGTGGTCAAATTCTTTTCATTC
Found at i:1213590 original size:44 final size:44
Alignment explanation
Indices: 1213530--1214201 Score: 144
Period size: 44 Copynumber: 15.3 Consensus size: 44
1213520 CTATCTAACG
*
1213530 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACA
1 TATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATTTGACA
* * * ** * *
1213574 TATGATTACCACCTTGGTCAAATCTACCTCTC-CCCT-ATCTGACG
1 TATGGTTACCACCTTGGTCAAAT-T-CTTTTCATTCTGATTTGACA
* * * *
1213618 TATGGTTACCACCGTGGTCAGATTCTTTTCATTTTGATTTAACA
1 TATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATTTGACA
** *** * ** * * *
1213662 TATGGTTACTTCCCAAGTCAAACTCTCCTCTTTCT--TGTCGAGCG
1 TATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGAT-TTGA-CA
* * * * * * **
1213706 TACGGTTACTACCCTT-GTCATATTTTTTTCATTTTAATTTGATT
1 TATGGTTACCA-CCTTGGTCAAATTCTTTTCATTCTGATTTGACA
* * * * * * * * *
1213750 TATGGTTGCCACCCTGTTAAAATCTACCTCTC-TTTTG-TCTGACG
1 TATGGTTACCACCTTGGTCAAAT-T-CTTTTCATTCTGATTTGACA
* * * **** **
1213794 TATGGTTACTACCATGG-AAAAAAAATTTCATT-TCGATTTGATG
1 TATGGTTACCACCTTGGTCAAATTCTTTTCATTCT-GATTTGACA
* * **
1213837 TATGGTTACCATCTTGATCAAA-TCTGCCTC-TCTCTTG-TTTGACA
1 TATGGTTACCACCTTGGTCAAATTCT-TTTCAT-TC-TGATTTGACA
* * ** * * *
1213881 TATGGTTACCACCCTAGTCTGATTCTTTTGATTACT-ATTTAACC
1 TATGGTTACCACCTTGGTCAAATTCTTTTCATT-CTGATTTGACA
* * *** * ** *
1213925 TATGGTTACCACCTTGGGCAAATCCACCTCATTCTTATCCGACG
1 TATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATTTGACA
* * **
1213969 TATGGTTACCACCCTGGTCAGATGT-TTTTCATTCTGATTTGATG
1 TATGGTTACCACCTTGGTCAAAT-TCTTTTCATTCTGATTTGACA
* * ** * * * *
1214013 TATGATTACCACCCTGGTCAAA-TC-TACCACCCTCCTG-TCTAACT
1 TATGGTTACCACCTTGGTCAAATTCTTTTCA---TTCTGATTTGACA
** * *
1214057 TATCATTACCACCTTGTTCAAATTCTTTTCATTTCT-ATTTGACG
1 TATGGTTACCACCTTGGTCAAATTCTTTTCA-TTCTGATTTGACA
*** * * * * * *
1214101 TATGGTTACCATGGTCGTCTAATCTGCCTTTC-TCCT-ATGTGATA
1 TATGGTTACCACCTTGGTCAAAT-T-CTTTTCATTCTGATTTGACA
* * *
1214145 TATGGTTACTACCTTGGTTAAATTCTTTTCATT-TCGATTTGACG
1 TATGGTTACCACCTTGGTCAAATTCTTTTCATTCT-GATTTGACA
1214189 TATGGTTACCACC
1 TATGGTTACCACC
1214202 CTAGACACAT
Statistics
Matches: 425, Mismatches: 165, Indels: 76
0.64 0.25 0.11
Matches are distributed among these distances:
41 4 0.01
42 18 0.04
43 34 0.08
44 326 0.77
45 26 0.06
46 17 0.04
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (44 bp):
TATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATTTGACA
Found at i:1213599 original size:160 final size:161
Alignment explanation
Indices: 1213209--1213603 Score: 420
Period size: 160 Copynumber: 2.5 Consensus size: 161
1213199 CTATGTGATA
* *
1213209 TATGGTTACTACCTTGGTCAAATTCTTTTCATT-TCGATTTGACGTATGGTTACCACCCTAGACA
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCT-GATTTGACGTATGATTACCACCCTAGTCA
* * ** * *
1213273 CATCCACCTTTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTTCACCTATGGTAACTAC
65 AATCTACCTCATTCCTATCTAACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCAC
* * * *
1213338 CTTAGTGAAATCCACCTCCTTCCTGTCTGACG
130 CATAGTAAAATCCACCTCCTTCCTATCTAACG
* * * * * * * *
1213370 TATGGTTACCACCCTGGTCTAATTCTTTTCATTCCT-AATTGACGCATCATGACCACCCTAGTTA
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATT-CTGATTTGACGTATGATTACCACCCTAGTCA
* * * * * * * *
1213434 AATCTACCTCATTCGTGTCTGACATGTCAGATTC-ATTCTTTTTGATTTGACGTATGGTTACCAC
65 AATCTACCTCATTCCTATCTAACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCAC
****
1213498 CATAGTAAAATTTGTCTCCCTT-CTATCTAACG
130 CATAGTAAAATCCACCT-CCTTCCTATCTAACG
* * *
1213530 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGATTACCACCTTGGTCAA
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACGTATGATTACCACCCTAGTCAA
1213595 ATCTACCTC
66 ATCTACCTC
1213604 TCCCCTATCT
Statistics
Matches: 187, Mismatches: 43, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
159 2 0.01
160 102 0.55
161 82 0.44
163 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (161 bp):
TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACGTATGATTACCACCCTAGTCAA
ATCTACCTCATTCCTATCTAACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCACC
ATAGTAAAATCCACCTCCTTCCTATCTAACG
Found at i:1214225 original size:88 final size:88
Alignment explanation
Indices: 1214062--1214226 Score: 201
Period size: 88 Copynumber: 1.9 Consensus size: 88
1214052 TAACTTATCA
* *** * * **
1214062 TTACCACCTTGTTCAAATTCTTTTCATTTCTATTTGACGTATGGTTACCATGGTCGTCTAATCTG
1 TTACCACCTTGTTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACTAATCCA
1214127 CCTTTCTCCTATGTGATATATGG
66 CCTTTCTCCTATGTGATATATGG
*
1214150 TTACTACCTTGGTT-AAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGAC-ACATC
1 TTACCACCTT-GTTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACTA-ATC
1214213 CACCTCTT-TCCTAT
64 CACCT-TTCTCCTAT
1214227 CTAACATGTC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
87 1 0.02
88 59 0.91
89 5 0.08
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (88 bp):
TTACCACCTTGTTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACTAATCCA
CCTTTCTCCTATGTGATATATGG
Found at i:1214488 original size:44 final size:43
Alignment explanation
Indices: 1214416--1214572 Score: 138
Period size: 44 Copynumber: 3.6 Consensus size: 43
1214406 CATTTTGATT
*** *
1214416 TGACGTATGGTTACCACCACAGTTAAATTTGTCTCTCTTCTATA
1 TGACGTATGGTTACCACCTTGGTCAAATTT-TCTCTCTTCTATA
* * *
1214460 TAACGTATGGTTACTACCTTGGTCAAATTCTT-T-TCATTCTGATT
1 TGACGTATGGTTACCACCTTGGTCAAATT-TTCTCTC-TTCT-ATA
* * ** * *
1214504 TGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATC
1 TGACGTATGGTTACCACCTTGGTCAAAT-TTTCTCTCTTCTATA
1214548 TGACGTATGGTTACCACCTTGGTCA
1 TGACGTATGGTTACCACCTTGGTCA
1214573 GATTCTTTTC
Statistics
Matches: 90, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
42 2 0.02
43 5 0.06
44 75 0.83
45 6 0.07
46 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (43 bp):
TGACGTATGGTTACCACCTTGGTCAAATTTTCTCTCTTCTATA
Found at i:1214520 original size:159 final size:159
Alignment explanation
Indices: 1214145--1214548 Score: 388
Period size: 159 Copynumber: 2.5 Consensus size: 159
1214135 CTATGTGATA
* *
1214145 TATGGTTACTACCTTGGTTAAATTCTTTTCATT-TCGATTTGACGTATGGTTACCACCCTAGACA
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCT-GATTTGACATAT-GTTACCA-CCTAGACA
* * * **
1214209 CATCCACCTCTTTCCTATCTAACATGTCAGATTCTTTTCATTTTGATTTCACCTATGGTAACTGC
63 AATCCACCTCCTTCCTATCTAACATGTCAGATTCTATTCATTTTGATTTCACCTATGGTAACCAC
** * * *
1214274 CTTAGTGAAATCCACCTCCTTCCTGTCTGACG
128 CACAGTGAAATCCACCTCCTTCCTATATAACG
* * * * **
1214306 TATGGTTACCACCCTGGTCTAATTCTTTTCATTCCT-ATTTGACGCATA-GTGACCACCTAGTTA
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATT-CTGATTTGA--CATATGTTACCACCTAGACA
* * * * * *
1214369 AATCCACCTCCTTCGTGTCTGACATGTCAGATTC-ATTCATTTTGATTTGACGTATGGTTACCAC
63 AATCCACCTCCTTCCTATCTAACATGTCAGATTCTATTCATTTTGATTTCACCTATGGTAACCAC
* ****
1214433 CACAGTTAAATTTGTCTCTCTT-CTATATAACG
128 CACAGTGAAATCCACCTC-CTTCCTATATAACG
* *
1214465 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGATTACCACCTTGGTCAA
1 TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATG-TTACCACC-TAGACAA
*
1214530 ATCTACCT-CTCTCCTATCT
64 ATCCACCTCCT-TCCTATCT
1214549 GACGTATGGT
Statistics
Matches: 195, Mismatches: 38, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 3 0.02
159 87 0.45
160 56 0.29
161 41 0.21
163 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (159 bp):
TATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGTTACCACCTAGACAAAT
CCACCTCCTTCCTATCTAACATGTCAGATTCTATTCATTTTGATTTCACCTATGGTAACCACCAC
AGTGAAATCCACCTCCTTCCTATATAACG
Found at i:1214554 original size:88 final size:88
Alignment explanation
Indices: 1214404--1215134 Score: 514
Period size: 88 Copynumber: 8.3 Consensus size: 88
1214394 GTCAGATTCA
* * *** * * ** * * *
1214404 TTCATTTTGATTTGACGTATGGTTACCACCACAGTTAAATTTGTCTCTCTTCTATATAACGTATG
1 TTCATTCTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
*
1214469 GTTACTACCTTGGTCAAATTCTT
66 GTTACCACCTTGGTCAAATTCTT
*
1214492 TTCATTCTGATTTGACATATGATTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
1 TTCATTCTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
*
1214557 GTTACCACCTTGGTCAGATTCTT
66 GTTACCACCTTGGTCAAATTCTT
* * * * ** * * * * *
1214580 TTCATTTTGATTTAACATATTGTTACC-TCTCAAGTCAAGGTCT-CATCTTTCTTGTCT-AGCGT
1 TTCATTCTGATTTGACATATGGTTACCACCT-TGGTCAA-ATCTACCTCTCTCCTATCTGA-CGT
* * *
1214642 ATGGTTACTACCCTT-GTCAGATTTTT
63 ATGGTTACCA-CCTTGGTCAAATTCTT
* * ** * * * * ** * *
1214668 TTCATT-TCAATTTCATTTATGGTTGCCACCCTGTTAAAATCTACCTCTCTTTTGTCTGATGTAT
1 TTCATTCT-GATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTAT
* * *
1214732 GGTTACTACCTTTGTAAAATTCTT
65 GGTTACCACCTTGGTCAAATTCTT
* * * * * * * * *
1214756 TTCATT-TCGATTTGATATATGGTTACCATCTTGATGAAATCTACCTCTCACTTCTTTGACATAT
1 TTCATTCT-GATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTAT
* ** *
1214820 GGTTACCACCCTGGTCTTATTCCT
65 GGTTACCACCTTGGTCAAATTCTT
* * * * * *
1214844 TTCATTACT-ATTTAACCTATGGTTACCACCTTGGGCAAATCCACCTC-CTTCTTATCCGACGTA
1 TTCATT-CTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTC-TCCTATCTGACGTA
* * *
1214907 TGGTTACCACCCTAGTCAGATTCTT
64 TGGTTACCACCTTGGTCAAATTCTT
* * * * * * * * *
1214932 TTCATTCTGATTTGACGTATGATTACCACCCTAGTCAAAT-TACCAC-CTCCTGTCTAACTTATA
1 TTCATTCTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
1214995 GTTACCACCTTGGTCAAATTCTT
66 GTTACCACCTTGGTCAAATTCTT
* ** * * * * **
1215018 TTCATT-TCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATAT
1 TTCATTCT-GATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTAT
*
1215082 GGTTACTACCTTGGTCAAATTCTT
65 GGTTACCACCTTGGTCAAATTCTT
*
1215106 TTCATTTCT-ATTTGACGTATGGTTACCAC
1 TTCA-TTCTGATTTGACATATGGTTACCAC
1215135 TCTAGACACA
Statistics
Matches: 505, Mismatches: 120, Indels: 36
0.76 0.18 0.05
Matches are distributed among these distances:
85 1 0.00
86 62 0.12
87 23 0.05
88 406 0.80
89 11 0.02
90 2 0.00
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (88 bp):
TTCATTCTGATTTGACATATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
GTTACCACCTTGGTCAAATTCTT
Found at i:1214605 original size:44 final size:44
Alignment explanation
Indices: 1214460--1215134 Score: 157
Period size: 44 Copynumber: 15.4 Consensus size: 44
1214450 CTCTTCTATA
* *
1214460 TAACGTATGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATT
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATT
* * * * * *
1214504 TGACATATGATTACCACCTTGGTCAAATCTACCTCTC-TCCT-ATC
1 TAACATATGGTTACCACCTTGGTCAAAT-T-CTTTTCATTCTGATT
* * * *
1214548 TGACGTATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGATT
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATT
* * ** ** ** * *
1214592 TAACATATTGTTACC-TCTCAAGTCAAGGTCTCATCTTTCTTG-TC
1 TAACATATGGTTACCACCT-TGGTCAAATTCTTTTCATTC-TGATT
* * * * * *
1214636 TAGCGTATGGTTACTACCCTT-GTCAGATTTTTTTCATT-TCAATT
1 TAACATATGGTTACCA-CCTTGGTCAAATTCTTTTCATTCT-GATT
* ** * * * * * * * *
1214680 TCATTTATGGTTGCCACCCTGTTAAAATCTACCTCTC-TTTTG-TC
1 TAACATATGGTTACCACCTTGGTCAAAT-T-CTTTTCATTCTGATT
* ** * * *
1214724 TGATGTATGGTTACTACCTTTGTAAAATTCTTTTCATT-TCGATT
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATTCT-GATT
* * * * * * *
1214768 TGATATATGGTTACCATCTTGATGAAATCTACCTCTCACTTC---TT
1 TAACATATGGTTACCACCTTGGTCAAAT-T-CTTTTCA-TTCTGATT
* * ** *
1214812 TGACATATGGTTACCACCCTGGTCTTATTCCTTTCATTACT-ATT
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATT-CTGATT
* * * *** * * *
1214856 TAACCTATGGTTACCACCTTGGGCAAATCCACCTCCTTCTTATC
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATT
** * * * *
1214900 CGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATT
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATT
* * * * * ** * * *
1214944 TGACGTATGATTACCACCCTAGTCAAATTAC--CACCTCCTG-TC
1 TAACATATGGTTACCACCTTGGTCAAATT-CTTTTCATTCTGATT
* *
1214986 TAACTTATAGTTACCACCTTGGTCAAATTCTTTTCATT-TCGATT
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATTCT-GATT
* * ** * * * * * *
1215030 TGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTC-TCCT-ATG
1 TAACATATGGTTACCACCTTGGTCAAAT-T-CTTTTCATTCTGATT
* * *
1215074 TGATATATGGTTACTACCTTGGTCAAATTCTTTTCATTTCT-ATT
1 TAACATATGGTTACCACCTTGGTCAAATTCTTTTCA-TTCTGATT
* *
1215118 TGACGTATGGTTACCAC
1 TAACATATGGTTACCAC
1215135 TCTAGACACA
Statistics
Matches: 440, Mismatches: 156, Indels: 70
0.66 0.23 0.11
Matches are distributed among these distances:
41 3 0.01
42 46 0.10
43 24 0.05
44 332 0.75
45 13 0.03
46 20 0.05
47 2 0.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (44 bp):
TAACATATGGTTACCACCTTGGTCAAATTCTTTTCATTCTGATT
Found at i:1215433 original size:160 final size:160
Alignment explanation
Indices: 1215079--1215446 Score: 391
Period size: 161 Copynumber: 2.3 Consensus size: 160
1215069 CTATGTGATA
* * * * *
1215079 TATGGTTACTACCTTGGTCAAATTCTTTTCATTTCTATTTGACGTATGGTTACCACTCTAGACAC
1 TATGGTTACTACCTTGGTTAAATTCTTTTCA-TTCTATTTGACGTATAGTGACCACCCTAGACAA
* * * **
1215144 ATCCACCTCTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCC
65 ATCCACCTCCTTCCTATCTAACATGTCAGATTCTATTCATTTCAATTTCACCTATGGTAACCACC
** * *
1215209 TTAGTGAAATCCACCTCCTTCCTATCTGACG
130 ACAGTGAAATCCACCTCCTTCCTATATAACG
* * * **
1215240 TATGGTTACCACCCTGGTCT-AATTCTTTTCATTCCTATTTGATGTATAGTGACCACCCTAGTTA
1 TATGGTTACTACCTTGGT-TAAATTCTTTTCATT-CTATTTGACGTATAGTGACCACCCTAGACA
* * * * * * *
1215304 AATCCACCTCCTTCGTGTTTAACATGTCAGATTC-ATTCATTTTAATTTGACGTATGGTTACCAC
64 AATCCACCTCCTTCCTATCTAACATGTCAGATTCTATTCATTTCAATTTCACCTATGGTAACCAC
* ****
1215368 CACAGTTAAATTTGTCTCTCTT-CTATATAACG
129 CACAGTGAAATCCACCTC-CTTCCTATATAACG
1215400 TATGGTTACTACCTTGGTTAAATTCTTTTCATTCTGATTTGACGTAT
1 TATGGTTACTACCTTGGTTAAATTCTTTTCATTCT-ATTTGACGTAT
1215447 GATTACCATC
Statistics
Matches: 168, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
159 3 0.02
160 82 0.49
161 83 0.49
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (160 bp):
TATGGTTACTACCTTGGTTAAATTCTTTTCATTCTATTTGACGTATAGTGACCACCCTAGACAAA
TCCACCTCCTTCCTATCTAACATGTCAGATTCTATTCATTTCAATTTCACCTATGGTAACCACCA
CAGTGAAATCCACCTCCTTCCTATATAACG
Found at i:1215445 original size:44 final size:43
Alignment explanation
Indices: 1215397--1215527 Score: 122
Period size: 44 Copynumber: 3.0 Consensus size: 43
1215387 CTTCTATATA
*
1215397 ACGTATGGTTACTACCTTGGTTAAATTCTTTTCATTCTGATTTG
1 ACGTATGGTTAC-ACCTTGGTCAAATTCTTTTCATTCTGATTTG
* * * * * *
1215441 ACGTATGATTACCATCTTGGTCAAATCTACCTCTC-TCCT-ATCTG
1 ACGTATGGTTA-CACCTTGGTCAAAT-T-CTTTTCATTCTGATTTG
* *
1215485 ACGTATGGTTAACACCTTGGTCAGATTCTTTTCATTTTGATTT
1 ACGTATGGTT-ACACCTTGGTCAAATTCTTTTCATTCTGATTT
1215528 AACATATTGT
Statistics
Matches: 66, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
42 4 0.06
43 3 0.05
44 49 0.74
45 6 0.09
46 4 0.06
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (43 bp):
ACGTATGGTTACACCTTGGTCAAATTCTTTTCATTCTGATTTG
Found at i:1215489 original size:88 final size:87
Alignment explanation
Indices: 1215339--1217124 Score: 674
Period size: 88 Copynumber: 20.6 Consensus size: 87
1215329 GTCAGATTCA
* ** * * ** * * *
1215339 TTCATTTTAATTTGACGTATGGTTACCA-CCACAGTTAAATTTGTCTCTCTTCTATATAACGTAT
1 TTCA-TTTGATTTGACGTATGGTTACCATCC-TGGTCAAATCTACCTCTCTCCTATCTGACGTAT
* *
1215403 GGTTACTACCTTGGTTAAATTCTT
64 GGTTACCACCTTGGTCAAATTCTT
* *
1215427 TTCATTCTGATTTGACGTATGATTACCATCTTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
1 TTCATT-TGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* *
1215492 GTTAACACCTTGGTCAGATTCTT
65 GTTACCACCTTGGTCAAATTCTT
* * * ** * * * *
1215515 TTCATTTTGATTTAACATATTGTTACC-TCCCAAGTCAAGCTCT-CCTCTTTCTTGTCT-AGCGT
1 TTCA-TTTGATTTGACGTATGGTTACCAT-CCTGGTCAA-ATCTACCTCTCTCCTATCTGA-CGT
* * *
1215577 ATGGTTACTACCCTT-GTCAGATTTTT
62 ATGGTTACCA-CCTTGGTCAAATTCTT
* * ** * * * ** * ** *
1215603 TTCATTTCAATTTCATTTATTGTTGCCACCCTATTAAAATCTACCTCTCTTTTGTCTGACGTATG
1 TTCATTT-GATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* *
1215668 GTTACTACCTTGGTAAAATTCTT
65 GTTACCACCTTGGTCAAATTCTT
** * * * * * * *
1215691 TTCATTTCGATTTGATATATGGTTACCATCTTGATGAAATCTACCTCTCTCTTGTTTGACATATG
1 TTCATTT-GATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* *
1215756 GTTACCACCCTGGTCTAATTCTT
65 GTTACCACCTTGGTCAAATTCTT
* * * *
1215779 TTCATTACT-ATTTAACCTATGGTTACCA-CCATGCGT-AAATCCACCTC-CTTCTTATCTGACG
1 TTCATT--TGATTTGACGTATGGTTACCATCC-TG-GTCAAATCTACCTCTC-TCCTATCTGACG
* *
1215840 TATGGTTACCACCCTGGTCAGATTCTT
61 TATGGTTACCACCTTGGTCAAATTCTT
* * * * * *
1215867 TTCATTCTGATTTTACGTATGATTACCACCCTGGTCAAATCTACCAC-CTCCTATCTAACTTATG
1 TTCATT-TGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
1215931 GTTACCACCTTGGTCAAATTCTT
65 GTTACCACCTTGGTCAAATTCTT
** * * * * **
1215954 TTCATTTTGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATATG
1 TTCA-TTTGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* *
1216019 GTTACCACTTTGGTCAAACTCTT
65 GTTACCACCTTGGTCAAATTCTT
* * * * * * * * *
1216042 TTCATTTCGATTTGACGTATGGTTACCACCCTAGACACATCCACCTTTTTCTTATCTAAC--AT-
1 TTCATTT-GATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* * * * * *
1216104 GTCA-GATTCTT--TTAATTTCGGT
65 GTTACCA-CCTTGGTCAAATTC-TT
* * * ** ** * * *
1216126 TTAATGCATGGTTACCAC-CCTGGTTA-AAT--T--T---GTC--CCTCT-T-CTATCTAACGTA
1 TTCAT--TTGATT-TGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTA
* * * *
1216178 TGCTTATCACCCTGGTCAAATTTTT
63 TGGTTACCACCTTGGTCAAATTCTT
* * * * * *
1216203 TTCATTCTGATTTGACGTACGATTACCA-CCTTTGTCAAATCTGCCTCTTTCCTATCTAACGTAT
1 TTCATT-TGATTTGACGTATGGTTACCATCC-TGGTCAAATCTACCTCTCTCCTATCTGACGTAT
* * * * *
1216267 GGTTACTACCTTAGTTACATTATT
64 GGTTACCACCTTGGTCAAATTCTT
* * * * * * * * *
1216291 ATCATTTTGATTTGACGTACGGTTACCATCTTGGTCAAAGCTACCACTTTCTTGTCTGACATATG
1 TTCA-TTTGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* * *
1216356 GTTACCACCCTAGTCAGATTCTT
65 GTTACCACCTTGGTCAAATTCTT
* * * * * * * * * *
1216379 ATCATTCTTATTTGATGTATGGTTACCACCCTAGTAAAATCCACCTC-CTTCTTATCTGATGCAT
1 TTCATT-TGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTC-TCCTATCTGACGTAT
* * *
1216443 GGTTACCACCCTAGTCAAATTTTT
64 GGTTACCACCTTGGTCAAATTCTT
* * * * * * * * *
1216467 TTCATTCCGATTTGACATATGTTTACCACCCTAGTCAAATCCACCAC-CTTCCTATCTAACGTAC
1 TTCATT-TGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTC-TCCTATCTGACGTAT
*
1216531 GGTTAACACCTTGGTCAAATTCTT
64 GGTTACCACCTTGGTCAAATTCTT
* * * * * * * *
1216555 TTTATTCCT-ATTTGATGCATGGTTAACACCCTAGTCAAATCCACCTC-CTTCCTGTCTGAC--A
1 TTCATT--TGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTC-TCCTATCTGACGTA
* * * * *
1216616 T-GTTA-GATTCTT-TTC-ATTTCGAT
63 TGGTTACCA-CCTTGGTCAAATTC-TT
* * * **** * * * * * *
1216639 TTGATGTAAGGCCAC-TACCCTCGTTA-AAT--TTGTC---TCT-CATCTAT-CTA----ACATA
1 TTCATTTGATTTGACGTA---TGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTA
* *
1216691 TGGTTACCACCCTAGTCAAATTCTT
63 TGGTTACCACCTTGGTCAAATTCTT
* ** * ** * ** * * *
1216716 TTCATTCTAATTTGACGTATCATTACCACCCTACTAAAAAATGCCCCTTTCCTATCTGACGTATG
1 TTCATT-TGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* *
1216781 GTTACTACCTTGGTCACATTCTT
65 GTTACCACCTTGGTCAAATTCTT
* * ** * * * * * *
1216804 TTCATATTGATTTGATGTATGGCTACCATATTGGCCAAATCTGCCTCTTTCATGTCTGAAC-TAC
1 TTCAT-TTGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTG-ACGTAT
* *
1216868 GGTTACCACCCTGGTCAGATTCTT
64 GGTTACCACCTTGGTCAAATTCTT
* * * * * * * * * *
1216892 TTCATTTTGATTTGAAGTATGATTACGACCCTGGTCAAATCTACCACCCTTCTGTCTAACTTATG
1 TTCA-TTTGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
*
1216957 GTTACCACATTGGTCAAATTCTT
65 GTTACCACCTTGGTCAAATTCTT
* ** * * * * ** *
1216980 TTCATTTCGATTTGATGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATCTG
1 TTCATTT-GATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATG
* *
1217045 GTTACTACCTTGGTCAAATTCCT
65 GTTACCACCTTGGTCAAATTCTT
** * * * * * *
1217068 TTCATTTCGATTTGACGTATAATTACCACCCTAGACACATCCACCTCTTTCCTATCT
1 TTCATTT-GATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCT
1217125 AACATGTCAG
Statistics
Matches: 1265, Mismatches: 347, Indels: 172
0.71 0.19 0.10
Matches are distributed among these distances:
73 10 0.01
74 1 0.00
75 10 0.01
76 23 0.02
77 20 0.02
78 18 0.01
79 7 0.01
81 1 0.00
82 8 0.01
83 15 0.01
84 21 0.02
85 26 0.02
86 11 0.01
87 100 0.08
88 971 0.77
89 22 0.02
90 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (87 bp):
TTCATTTGATTTGACGTATGGTTACCATCCTGGTCAAATCTACCTCTCTCCTATCTGACGTATGG
TTACCACCTTGGTCAAATTCTT
Found at i:1216063 original size:44 final size:43
Alignment explanation
Indices: 1215659--1216071 Score: 194
Period size: 44 Copynumber: 9.4 Consensus size: 43
1215649 CTCTTTTGTC
* *
1215659 TGACGTATGGTTACTACCTTGGTAAAATTCTTTTCATTTCGATT
1 TGACGTATGGTTACCACCTTGGTCAAA-TCTTTTCATTTCGATT
** * * * *
1215703 TGATATATGGTTACCATCTTGATGAAATCTACCTCTC-TCTT-G-TT
1 TGACGTATGGTTACCACCTTGGTCAAATCT---TTTCAT-TTCGATT
* * * * *
1215747 TGACATATGGTTACCACCCTGGTCTAATTCTTTTCATTACTATT
1 TGACGTATGGTTACCACCTTGGTC-AAATCTTTTCATTTCGATT
* * * *** * * *
1215791 TAACCTATGGTTACCACCATGCGT-AAATCCACCTC-CTTCTTATC
1 TGACGTATGGTTACCACCTTG-GTCAAAT-CTTTTCATTTC-GATT
* *
1215835 TGACGTATGGTTACCACCCTGGTCAGATTCTTTTCA-TTCTGATT
1 TGACGTATGGTTACCACCTTGGTCA-AATCTTTTCATTTC-GATT
* * * ** * * * *
1215879 TTACGTATGATTACCACCCTGGTCAAATC-TACCACCTCCTATC
1 TGACGTATGGTTACCACCTTGGTCAAATCTTTTCA-TTTCGATT
* * *
1215922 TAACTTATGGTTACCACCTTGGTCAAATTCTTTTCATTTTGATT
1 TGACGTATGGTTACCACCTTGGTCAAA-TCTTTTCATTTCGATT
** * * ** * * *
1215966 TGACGTATGGTTACCATGTTCGTCTAATCTGCCTC-TCTCCTATG
1 TGACGTATGGTTACCACCTTGGTCAAATCT-TTTCAT-TTCGATT
** *
1216010 TGATATATGGTTACCACTTTGGTCAAACTCTTTTCATTTCGATT
1 TGACGTATGGTTACCACCTTGGTCAAA-TCTTTTCATTTCGATT
1216054 TGACGTATGGTTACCACC
1 TGACGTATGGTTACCACC
1216072 CTAGACACAT
Statistics
Matches: 267, Mismatches: 80, Indels: 44
0.68 0.20 0.11
Matches are distributed among these distances:
42 7 0.03
43 43 0.16
44 194 0.73
45 18 0.07
46 5 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (43 bp):
TGACGTATGGTTACCACCTTGGTCAAATCTTTTCATTTCGATT
Found at i:1216607 original size:44 final size:44
Alignment explanation
Indices: 1216352--1216607 Score: 179
Period size: 44 Copynumber: 5.8 Consensus size: 44
1216342 TTGTCTGACA
* * *** * *
1216352 TATGGTTACCACCCTAGTCAGATTCTTATCATTCTTATTTGATG
1 TATGGTTACCACCCTAGTCAAATCCACCTCCTTCCTATTTGATG
* * *
1216396 TATGGTTACCACCCTAGTAAAATCCACCTCCTTCTTATCTGATG
1 TATGGTTACCACCCTAGTCAAATCCACCTCCTTCCTATTTGATG
* ***** * * **
1216440 CATGGTTACCACCCTAGTCAAATTTTTTTCATTCCGATTTGACA
1 TATGGTTACCACCCTAGTCAAATCCACCTCCTTCCTATTTGATG
* * * * *
1216484 TATGTTTACCACCCTAGTCAAATCCACCACCTTCCTATCTAACG
1 TATGGTTACCACCCTAGTCAAATCCACCTCCTTCCTATTTGATG
* * * * * *** **
1216528 TACGGTTAACACCTTGGTCAAATTCTTTTTATTCCTATTTGATG
1 TATGGTTACCACCCTAGTCAAATCCACCTCCTTCCTATTTGATG
* *
1216572 CATGGTTAACACCCTAGTCAAATCCACCTCCTTCCT
1 TATGGTTACCACCCTAGTCAAATCCACCTCCTTCCT
1216608 GTCTGACATG
Statistics
Matches: 153, Mismatches: 59, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
44 153 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (44 bp):
TATGGTTACCACCCTAGTCAAATCCACCTCCTTCCTATTTGATG
Found at i:1216684 original size:513 final size:510
Alignment explanation
Indices: 1215827--1217153 Score: 1604
Period size: 513 Copynumber: 2.6 Consensus size: 510
1215817 ATCCACCTCC
* * * * *
1215827 TTCTTATCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTTACGTATGATTA
1 TTCTTGTCTGACATATGGTTACCACCCTGGTCAGATTCTTTTCATTCTTATTTGAAGTATGATTA
*
1215892 CCACCCTGGTCAAATCTACCACCTCCTATCTAACTTATGGTTACCACCTTGGTCAAATTCTTTTC
66 CCACCCTGGTCAAATCTACCACCTTCTATCTAACTTATGGTTACCACCTTGGTCAAATTCTTTTC
* *
1215957 ATTTTGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATATGGTT
131 ATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTG--ATACGGTT
* * *
1216022 ACCACTTTGGTCAAACTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACATCCACC
194 AACACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACATCCACC
* * * * * ** *
1216087 TTTTTCTTATCTAACATGTCAGATTCTTTTAATTTCGGTTTAATGCATGGTTACCACCCTGGTTA
259 TCTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTTAATGCAAGGCCACCACCCTCGTTA
* * * * * *
1216152 AATTTGTCCCTCTTCTATCTAACGTATGCTTATCACCCTGGTCAAATTTTTTTCATTCTGATTTG
324 AATTTGTCCCTCATCTATCTAACATATGCTTACCACCCTAGTCAAATTCTTTTCATTCTAATTTG
* ** * ** *
1216217 ACGTA-CGATTACCACCTTTGTCAAATCTGCCTCTTTCCTATCTAACGTATGGTTACTACCTTAG
389 ACGTATC-ATTACCACCCTACTAAAAAATGCCCCTTTCCTATCTAACGTATGGTTACTACCTTAG
* * * * *
1216281 TTACATTATTATCATTTTGATTTGACGTACGGTTACCATCTTGGTCAAAGCTACCACT
453 TCACATTATTATCATATTGATTTGACGTACGGCTACCATATTGGCCAAAGCTACCACT
* * * *
1216339 TTCTTGTCTGACATATGGTTACCACCCTAGTCAGATTCTTATCATTCTTATTTGATGTATGGTTA
1 TTCTTGTCTGACATATGGTTACCACCCTGGTCAGATTCTTTTCATTCTTATTTGAAGTATGATTA
* * * * * * * * *
1216404 CCACCCTAGTAAAATCCACCTCCTTCTTATCTGA-TGCATGGTTACCACCCTAGTCAAATTTTTT
66 CCACCCTGGTCAAATCTACCACCTTC-TATCTAACT-TATGGTTACCACCTTGGTCAAATTCTTT
* * * *** * * ** * * *
1216468 TCATTCCGATTTGACATATGTTTACCACCCTAGTCAAATCCACCAC-CTTCCTATCTAACGTACG
129 TCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTC-TCCTATGTGA--TACG
* * * * * * * *
1216532 GTTAACACCTTGGTCAAATTCTTTTTATTCCTATTTGATGCATGGTTAACACCCTAGTCAAATCC
191 GTTAACACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACATCC
* * * * * * *
1216597 ACCTCCTTCCTGTCTGACATGTTAGATTCTTTTCATTTCGATTTGATGTAAGGCCACTACCCTCG
256 ACCTCTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTTAATGCAAGGCCACCACCCTCG
* *
1216662 TTAAATTTGTCTCTCATCTATCTAACATATGGTTACCACCCTAGTCAAATTCTTTTCATTCTAAT
321 TTAAATTTGTCCCTCATCTATCTAACATATGCTTACCACCCTAGTCAAATTCTTTTCATTCTAAT
*
1216727 TTGACGTATCATTACCACCCTACTAAAAAATGCCCCTTTCCTATCTGACGTATGGTTACTACCTT
386 TTGACGTATCATTACCACCCTACTAAAAAATGCCCCTTTCCTATCTAACGTATGGTTACTACCTT
* * * * * * * *
1216792 GGTCACATTCTTTTCATATTGATTTGATGTATGGCTACCATATTGGCCAAATCTGCCTCT
451 AGTCACATTATTATCATATTGATTTGACGTACGGCTACCATATTGGCCAAAGCTACCACT
* *
1216852 TTCATGTCTGA-ACTACGGTTACCACCCTGGTCAGATTCTTTTCATT-TTGATTTGAAGTATGAT
1 TTCTTGTCTGACA-TATGGTTACCACCCTGGTCAGATTCTTTTCATTCTT-ATTTGAAGTATGAT
* * *
1216915 TACGACCCTGGTCAAATCTACCACCCTTCTGTCTAACTTATGGTTACCACATTGGTCAAATTCTT
64 TACCACCCTGGTCAAATCTACCA-CCTTCTATCTAACTTATGGTTACCACCTTGGTCAAATTCTT
*
1216980 TTCATTTCGATTTGATGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATCTG
128 TTCATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATA-C-G
* **
1217045 GTT-ACTACCTTGGTCAAATTCCTTTCATTTCGATTTGACGTATAATTACCACCCTAGACACATC
191 GTTAAC-ACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACATC
1217109 CACCTCTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTT
255 CACCTCTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTT
1217154 CACCTATGGT
Statistics
Matches: 666, Mismatches: 135, Indels: 27
0.80 0.16 0.03
Matches are distributed among these distances:
511 3 0.00
512 86 0.13
513 569 0.85
514 8 0.01
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (510 bp):
TTCTTGTCTGACATATGGTTACCACCCTGGTCAGATTCTTTTCATTCTTATTTGAAGTATGATTA
CCACCCTGGTCAAATCTACCACCTTCTATCTAACTTATGGTTACCACCTTGGTCAAATTCTTTTC
ATTTCGATTTGACGTATGGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATACGGTTAA
CACCTTGGTCAAATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGACACATCCACCTC
TTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTTAATGCAAGGCCACCACCCTCGTTAAA
TTTGTCCCTCATCTATCTAACATATGCTTACCACCCTAGTCAAATTCTTTTCATTCTAATTTGAC
GTATCATTACCACCCTACTAAAAAATGCCCCTTTCCTATCTAACGTATGGTTACTACCTTAGTCA
CATTATTATCATATTGATTTGACGTACGGCTACCATATTGGCCAAAGCTACCACT
Found at i:1217001 original size:44 final size:44
Alignment explanation
Indices: 1216776--1217097 Score: 124
Period size: 44 Copynumber: 7.3 Consensus size: 44
1216766 CCTATCTGAC
* *
1216776 GTATGGTTACTACCTTGGTCACATTCTTTTCATATT-GATTTGAT
1 GTATGGTTACCACCTTGGTCAAATTCTTTTCAT-TTCGATTTGAT
* ** * ** *
1216820 GTATGGCTACCATATTGGCCAAA-TCTGCCTC-TTTC-ATGTCTGAA
1 GTATGGTTACCACCTTGGTCAAATTCT-TTTCATTTCGAT-T-TGAT
* * * * * *
1216864 CTACGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGAA
1 GTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTGAT
* * * ** * * *
1216908 GTATGATTACGACCCTGGTCAAA-TC-TACCACCCTTCTG-TCTAACT
1 GTATGGTTACCACCTTGGTCAAATTCTTTTCA--TTTC-GATTTGA-T
*
1216953 -TATGGTTACCACATTGGTCAAATTCTTTTCATTTCGATTTGAT
1 GTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTGAT
** * * ** * * *
1216996 GTATGGTTACCATGTTCGTCTAA-TCTGCCTC-TCTCCTATGTGAT
1 GTATGGTTACCACCTTGGTCAAATTCT-TTTCAT-TTCGATTTGAT
* * * * *
1217040 ATCTGGTTACTACCTTGGTCAAATTCCTTTCATTTCGATTTGAC
1 GTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTGAT
**
1217084 GTATAATTACCACC
1 GTATGGTTACCACC
1217098 CTAGACACAT
Statistics
Matches: 190, Mismatches: 69, Indels: 38
0.64 0.23 0.13
Matches are distributed among these distances:
42 7 0.04
43 13 0.07
44 152 0.80
45 13 0.07
46 5 0.03
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (44 bp):
GTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTGAT
Found at i:1217385 original size:44 final size:45
Alignment explanation
Indices: 1217301--1217428 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 45
1217291 GTCAGATTCA
* * * * * *
1217301 TTCATTTTGATTTGACGTATGGTTACCACCATAGTTAAATTTCTT
1 TTCATTCTGATCTAACGTATGGTTACCACCTTGGTCAAATTTCTT
*
1217346 TCTC-TTCT-ATCTAACGTATGGTTACTACCTTGGTCAAA-TTCTT
1 T-TCATTCTGATCTAACGTATGGTTACCACCTTGGTCAAATTTCTT
* * * *
1217389 TTCATTCTGATTTGACATATGATTACCACCTTGGTCAAAT
1 TTCATTCTGATCTAACGTATGGTTACCACCTTGGTCAAAT
1217429 CTACCTCTCT
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
42 2 0.03
43 10 0.15
44 49 0.73
45 4 0.06
46 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (45 bp):
TTCATTCTGATCTAACGTATGGTTACCACCTTGGTCAAATTTCTT
Found at i:1217444 original size:160 final size:161
Alignment explanation
Indices: 1217043--1217448 Score: 414
Period size: 160 Copynumber: 2.5 Consensus size: 161
1217033 ATGTGATATC
* * * * *
1217043 TGGTTACTACCTTGGTCAAATTCCTTTCATT-TCGATTTGACGTATAATTACCACCCTAGACACA
1 TGGTTACTACCTTGGTCAAATTCTTTTCATTCT-GATTTGACATATGATTACCACCCTAGTCAAA
* * * ** *
1217107 TCCACCTCTTTCCTATCTAACATGTCAGATTCTTTTCATTTCGATTTCACCTATGGTAACTGCCT
65 TCCACCTCTCTCCTATCTGACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCACCA
* * *
1217172 TAGGGAAATCCACCTCCTTCCTGTCTGATGTA
130 TAGGGAAATCCACCTCCTTCCTATCTAACGTA
* * * * *
1217204 TGGTTACCACCCTGGTCTAATTCTTTTCATTCCT-ATTTGACGCATA-G-TGACCACCCTAGTTA
1 TGGTTACTACCTTGGTCAAATTCTTTTCATT-CTGATTTGA--CATATGATTACCACCCTAGTCA
* * * *
1217266 AATCCACCTC-CTTCCTATCTGACATGTCAGATTC-ATTCATTTTGATTTGACGTATGGTTACCA
63 AATCCACCTCTC-TCCTATCTGACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCA
** * **
1217329 CCATAGTTAAATTTC-TTTCTCTT-CTATCTAACGTA
127 CCATAGGGAAA-TCCACCTC-CTTCCTATCTAACGTA
* *
1217364 TGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGATTACCACCTTGGTCAAAT
1 TGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGATTACCACCCTAGTCAAAT
*
1217429 CTACCTCTCTCCTATCTGAC
66 CCACCTCTCTCCTATCTGAC
1217449 GTATTTCATT
Statistics
Matches: 198, Mismatches: 36, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
158 4 0.02
159 3 0.02
160 106 0.54
161 81 0.41
163 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (161 bp):
TGGTTACTACCTTGGTCAAATTCTTTTCATTCTGATTTGACATATGATTACCACCCTAGTCAAAT
CCACCTCTCTCCTATCTGACATGTCAGATTCTATTCATTTCGATTTCACCTATGGTAACCACCAT
AGGGAAATCCACCTCCTTCCTATCTAACGTA
Found at i:1217780 original size:176 final size:177
Alignment explanation
Indices: 1217593--1218013 Score: 413
Period size: 176 Copynumber: 2.4 Consensus size: 177
1217583 ACTTCTCTTT
* *
1217593 TGTCTAACGTATGGTTACTACCTTGGTAAAATTCTTTTCATTTCGATTAGATGTATGGTTACCA-
1 TGTC-AACGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCAC
* * ** * * * * * *
1217657 TCTTGATCAAATCTGTCTCTCTCTTGTTTGACATATGGTTACCACCCTGGTCTAATTCTTTTCAT
65 CCTAG-TCAAATCTACCACCCTCCTGTCTAACATATGGTTACCACCCTGGTCAAATTCTTTTCAT
* * *
1217722 TACTATTTAACCTATGGTTACCACCTTAGGCAAATCCACCTC-CTACTTA
129 TACGATTTAACCTATAGTTACCACCTTAGGCAAATCCACCTCTCT-CCTA
* * * * * ***
1217771 T-TCAACGTATGGTTACCACCCTAGTCAGATTCTTTTCA-TTCTGATTTGACGTACAATTACCAC
1 TGTCAACGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTC-GATTTGATGTATGGTTACCAC
* *
1217834 CCTAGTCAAATCTACCACCCTCCTGTCTAACTTATGGTTACCACCTTGGTCAAATTCTTTTCATT
65 CCTAGTCAAATCTACCACCCTCCTGTCTAACATATGGTTACCACCCTGGTCAAATTCTTTTCATT
* * * ** * * * **
1217899 TCGATTTGACGTATAGTTACCATGTTCGTCTAATCTGCCTCTCTCCTA
130 ACGATTTAACCTATAGTTACCACCTTAGGCAAATCCACCTCTCTCCTA
* * *
1217947 TGTGATA--TATGGTTACTACCTTGGTCAAATTCTTTTCATTTCAATTTGATATATGGTTACCAC
1 TGTCA-ACGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCAC
1218010 CCTA
65 CCTA
1218014 AACACATCCA
Statistics
Matches: 191, Mismatches: 46, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
175 3 0.02
176 174 0.91
177 12 0.06
178 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.40
Consensus pattern (177 bp):
TGTCAACGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCACC
CTAGTCAAATCTACCACCCTCCTGTCTAACATATGGTTACCACCCTGGTCAAATTCTTTTCATTA
CGATTTAACCTATAGTTACCACCTTAGGCAAATCCACCTCTCTCCTA
Found at i:1217918 original size:44 final size:44
Alignment explanation
Indices: 1217599--1218010 Score: 157
Period size: 44 Copynumber: 9.4 Consensus size: 44
1217589 CTTTTGTCTA
* * *
1217599 ACGTATGGTTACTACCTTGGTAAAATTCTTTTCATTTCGATTAG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTG
* * *
1217643 ATGTATGGTTACCATCTTGATCAAA-TCTGTCTCTC-TCTT-G-TTTG
1 ACGTATGGTTACCACCTTGGTCAAATTCT-T-T-TCAT-TTCGATTTG
* * * * * *
1217687 ACATATGGTTACCACCCTGGTCTAATTCTTTTCATTACTATTTA
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTG
* * ** * * **
1217731 ACCTATGGTTACCACCTTAGG-CAAATCCACCTCCTACTT--ATTCA
1 ACGTATGGTTACCACCTT-GGTCAAATTC-TTTTC-ATTTCGATTTG
* * *
1217775 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCA-TTCTGATTTG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTC-GATTTG
*** * * ** * * * *
1217819 ACGTACAATTACCACCCTAGTCAAA-TC-TACCACCCTCCTG-TCTA
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCA--TTTC-GATTTG
*
1217863 ACTTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTG
* ** * * ** * * *
1217907 ACGTATAGTTACCATGTTCGTCTAA-TCTGCCTC-TCTCCTATGTG
1 ACGTATGGTTACCACCTTGGTCAAATTCT-TTTCAT-TTCGATTTG
** * *
1217951 ATATATGGTTACTACCTTGGTCAAATTCTTTTCATTTCAATTTG
1 ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTG
**
1217995 ATATATGGTTACCACC
1 ACGTATGGTTACCACC
1218011 CTAAACACAT
Statistics
Matches: 262, Mismatches: 81, Indels: 50
0.67 0.21 0.13
Matches are distributed among these distances:
41 2 0.01
42 7 0.03
43 15 0.06
44 209 0.80
45 20 0.08
46 9 0.03
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.40
Consensus pattern (44 bp):
ACGTATGGTTACCACCTTGGTCAAATTCTTTTCATTTCGATTTG
Found at i:1218028 original size:88 final size:88
Alignment explanation
Indices: 1217452--1218042 Score: 366
Period size: 88 Copynumber: 6.7 Consensus size: 88
1217442 ATCTGACGTA
* * * * * * * ***
1217452 TTTCATTTTGATTTAACATATGGTTACCTCCC-AAGTCAAACTCT-CCTCTTTCTTGTCTAGTGT
1 TTTCATTTCGATTTGACGTATGGTTACCACCCTAA-TCAAA-TCTACCTCTCTCCTATCTAACAT
* * *
1217515 ATGGTTACTACCCTT-GTCAGATTTT
64 ATGGTTACCA-CCTTGGTCAAATTCT
* ** * ** * * ** * *
1217540 TTTCATTTCAATTTGATTTATGGTTGCCACCCTGTTAAAATCTACTTCTCTTTTGTCTAACGTAT
1 TTTCATTTCGATTTGACGTATGGTTACCACCCTAATCAAATCTACCTCTCTCCTATCTAACATAT
* *
1217605 GGTTACTACCTTGGTAAAATTCT
66 GGTTACCACCTTGGTCAAATTCT
* * * * * ** * * * *
1217628 TTTCATTTCGATTAGATGTATGGTTACCATCTTGATCAAATCTGTCTCTCTCTTGTTTGACATAT
1 TTTCATTTCGATTTGACGTATGGTTACCACCCTAATCAAATCTACCTCTCTCCTATCTAACATAT
* *
1217693 GGTTACCACCCTGGTCTAATTCT
66 GGTTACCACCTTGGTCAAATTCT
* * * * * ** * * *
1217716 TTTCATTACTATTTAACCTATGGTTACCACCTTAGGCAAATCCACCTC-CTACTTAT-TCAACGT
1 TTTCATTTCGATTTGACGTATGGTTACCACCCTAATCAAATCTACCTCTCT-CCTATCT-AACAT
* * *
1217779 ATGGTTACCACCCTAGTCAGATTCT
64 ATGGTTACCACCTTGGTCAAATTCT
*** * * * * *
1217804 TTTCA-TTCTGATTTGACGTACAATTACCACCCTAGTCAAATCTACCACCCTCCTGTCTAACTTA
1 TTTCATTTC-GATTTGACGTATGGTTACCACCCTAATCAAATCTACCTCTCTCCTATCTAACATA
1217868 TGGTTACCACCTTGGTCAAATTCT
65 TGGTTACCACCTTGGTCAAATTCT
* *** ** * * * * *
1217892 TTTCATTTCGATTTGACGTATAGTTACCATGTTCGTCTAATCTGCCTCTCTCCTATGTGATATAT
1 TTTCATTTCGATTTGACGTATGGTTACCACCCTAATCAAATCTACCTCTCTCCTATCTAACATAT
*
1217957 GGTTACTACCTTGGTCAAATTCT
66 GGTTACCACCTTGGTCAAATTCT
* ** * * * *
1217980 TTTCATTTCAATTTGATATATGGTTACCACCCTAAACACATCCACCTCTTTCCTATCTAACAT
1 TTTCATTTCGATTTGACGTATGGTTACCACCCTAATCAAATCTACCTCTCTCCTATCTAACAT
1218043 TTCAAATTCT
Statistics
Matches: 387, Mismatches: 107, Indels: 18
0.76 0.21 0.04
Matches are distributed among these distances:
87 12 0.03
88 369 0.95
89 6 0.02
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (88 bp):
TTTCATTTCGATTTGACGTATGGTTACCACCCTAATCAAATCTACCTCTCTCCTATCTAACATAT
GGTTACCACCTTGGTCAAATTCT
Found at i:1218160 original size:44 final size:43
Alignment explanation
Indices: 1218044--1218183 Score: 100
Period size: 44 Copynumber: 3.2 Consensus size: 43
1218034 ATCTAACATT
* * * *
1218044 TCAAATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGG
1 TCAAATTTTTTTCA-TTCGATTTGATGTACGCTTACCACCCTGG
* * ** * * * *
1218088 TTAAATTTGTCCCTATTCTATCTAATGTACGCTTATCACCCTGG
1 TCAAATTTTTTTC-ATTCGATTTGATGTACGCTTACCACCCTGG
* * * * *
1218132 TCAAATTTTTTTCATTCCGATTTGATGTATGATTGCCACCGTTG
1 TCAAATTTTTTTCATT-CGATTTGATGTACGCTTACCACCCTGG
1218176 TCAAATTT
1 TCAAATTT
1218184 GCCTCTTTCC
Statistics
Matches: 69, Mismatches: 25, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
43 3 0.04
44 65 0.94
45 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (43 bp):
TCAAATTTTTTTCATTCGATTTGATGTACGCTTACCACCCTGG
Found at i:1218339 original size:44 final size:44
Alignment explanation
Indices: 1218198--1218530 Score: 153
Period size: 44 Copynumber: 7.6 Consensus size: 44
1218188 CTTTCCTATC
* * * * *
1218198 TGACGTATGGTTACTACCTTAGTCACATTATTATCATT-TCGATT
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTATCATTCT-TATT
* * * * * *
1218242 TGACGTATGGTTACCATCTTGGTCA-ATGC-TACCTC-TCTCTTGTC
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTA--TCAT-TCTTATT
*
1218286 TGACATATGGTTACCACCCTAGTCAGATTCTTATCATTCTTATT
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTATCATTCTTATT
* * * * * *
1218330 TGAGGTATGGTTACCACCCTAGTCA-AGTC-CACCTCCTTTTTATC
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTA--TCATTCTTATT
* * * * * **
1218374 TGATGCATGGTTAGCACCCTAGTCAGATTTTTTTCATTCAGATT
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTATCATTCTTATT
* * * * * * *
1218418 TGTCGTATGTTTACCACCCTAGTCA-AATC-CACCACCTTCCTATC
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTATCA--TTCTTATT
* * * * * *
1218462 TAACGTACGGTTAACACCTTAGTCAGATTCCTT-TTATTCCTATT
1 TGACGTATGGTTACCACCCTAGTCAGATT-CTTATCATTCTTATT
* * *
1218506 CGACGCACGGTTACCACCCTAGTCA
1 TGACGTATGGTTACCACCCTAGTCA
1218531 AATCCACCTC
Statistics
Matches: 210, Mismatches: 63, Indels: 32
0.69 0.21 0.10
Matches are distributed among these distances:
42 5 0.02
43 8 0.04
44 184 0.88
45 9 0.04
46 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (44 bp):
TGACGTATGGTTACCACCCTAGTCAGATTCTTATCATTCTTATT
Found at i:1218436 original size:88 final size:88
Alignment explanation
Indices: 1218124--1218544 Score: 294
Period size: 88 Copynumber: 4.8 Consensus size: 88
1218114 GTACGCTTAT
* * * ** * * * * * ***
1218124 CACCCTGGTCAAATTTTTTTCATTCCGATTTGATGTATGATTGCCACCGTTGTCAAATTTGCCTC
1 CACCCTAGTCAGATTCTTTTCATTCATATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTC
* * *
1218189 TTTCCTATCTGACGTATGGTT-A
66 CTTCCTATCTAACGCATGGTTAA
* * * * * * * * *
1218211 CTACCTTAGTCACATTATTATCATTTC-GATTTGACGTATGGTTACCATCTTGGTC-AATGCTAC
1 C-ACCCTAGTCAGATTCTTTTCA-TTCATATTTGACGTATGGTTACCACCCTAGTCAAAT-CCAC
* * * ** *
1218274 CT-CTCTCTTGTCTGACATATGGTTAC
63 CTCCT-TCCTATCTAACGCATGGTTAA
* * * *
1218300 CACCCTAGTCAGATTCTTATCATTCTTATTTGAGGTATGGTTACCACCCTAGTCAAGTCCACCTC
1 CACCCTAGTCAGATTCTTTTCATTCATATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTC
** * * *
1218365 CTTTTTATCTGATGCATGGTTAG
66 CTTCCTATCTAACGCATGGTTAA
* * * * *
1218388 CACCCTAGTCAGATTTTTTTCATTCAGATTTGTCGTATGTTTACCACCCTAGTCAAATCCACCAC
1 CACCCTAGTCAGATTCTTTTCATTCATATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTC
* *
1218453 CTTCCTATCTAACGTACGGTTAA
66 CTTCCTATCTAACGCATGGTTAA
* * * * *
1218476 CACCTTAGTCAGATTCCTTTT-ATTCCTATTCGACGCACGGTTACCACCCTAGTCAAATCCACCT
1 CACCCTAGTCAGATT-CTTTTCATTCATATTTGACGTATGGTTACCACCCTAGTCAAATCCACCT
1218540 CCTTC
65 CCTTC
1218545 ATGTCTGACA
Statistics
Matches: 265, Mismatches: 60, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
87 8 0.03
88 245 0.92
89 12 0.05
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.38
Consensus pattern (88 bp):
CACCCTAGTCAGATTCTTTTCATTCATATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTC
CTTCCTATCTAACGCATGGTTAA
Found at i:1218769 original size:88 final size:88
Alignment explanation
Indices: 1218559--1219088 Score: 384
Period size: 88 Copynumber: 6.0 Consensus size: 88
1218549 CTGACATGTT
* * ** * ** * * * * *
1218559 AGATTCTTTTCATTTCGATTTGATGCAAGGCCACTACCCTCATTAAATTTGTCTTTCTTCTATCT
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTCCTATCT
* *
1218624 AACATATGGTTACCGCCCTAGTC
66 AACATATGGTTACCACCCTGGTC
* * * *** ** *
1218647 AAATTCTTTTCA-TTCTAATTTGACGTAACATTACCACCCTACTCAAATATGCCTCTCTCCTATC
1 AGATTCTTTTCATTTC-GATTTGATGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTCCTATC
* * *
1218711 TAACGTATGGTTACTACCTTGGTC
65 TAACATATGGTTACCACCCTGGTC
* *** * * * * *
1218735 ACATTCTTTTCATTTTC-ATTTGATGTATGGTTACCATATTGGCCAAATCTGCCTCTTTCATGTT
1 AGATTCTTTTCA-TTTCGATTTGATGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTCCTATC
* * *
1218799 TCACGTATGGTTACCACCATGGTC
65 TAACATATGGTTACCACCCTGGTC
** * *
1218823 AGATTCTTTTCATACCTG-TTTGAATGTATGGTTACCACCTTGGTCAAATCTCCCTCTCTCCTAT
1 AGATTCTTTTCATTTC-GATTTG-ATGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTCCTAT
* * * * * *
1218887 TTGACGTATTGTTACCACCTTGGTT
64 CTAACATATGGTTACCACCCTGGTC
** *** * * * **
1218912 AGATTCTTTTCATTTCGATTTGAAATATGGTTACTGTCGTGGTTAAACTCT-CCTCTTTCCCGTC
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAA-TCTGCCTCTCTCCTATC
** *
1218976 TAACATATGGTTATGACCCTGGTA
65 TAACATATGGTTACCACCCTGGTC
* * * *
1219000 ATATTCTTTTCATTTCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTCT
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTCCTATCT
* *
1219065 GACATATGGTTACTACCCTGGTC
66 AACATATGGTTACCACCCTGGTC
1219088 A
1 A
1219089 AATCTACCTC
Statistics
Matches: 346, Mismatches: 87, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
87 8 0.02
88 259 0.75
89 76 0.22
90 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTCCTATCT
AACATATGGTTACCACCCTGGTC
Found at i:1218858 original size:45 final size:43
Alignment explanation
Indices: 1218704--1218924 Score: 144
Period size: 44 Copynumber: 5.0 Consensus size: 43
1218694 TATGCCTCTC
* * * *
1218704 TCCTATCTAACGTATGGTTACTACCTTGGTCACATTCTTTTCA
1 TCCTATTTGACGTATGGTTACCACCTTGGTCAGATTCTTTTCA
** * ** * *
1218747 TTTTCATTTGATGTATGGTTACCATATTGGCCAAATCTGCCTCTTTCA
1 TCCT-ATTTGACGTATGGTTACCACCTTGGTCAGAT-T--CT-TTTCA
* * *
1218795 ---TGTTTCACGTATGGTTACCACCATGGTCAGATTCTTTTCA
1 TCCTATTTGACGTATGGTTACCACCTTGGTCAGATTCTTTTCA
* * * * *
1218835 TACCTGTTTGAATGTATGGTTACCACCTTGGTCAAATCTCCCTCTC-
1 T-CCTATTTG-ACGTATGGTTACCACCTTGGTCAGAT-T-CTTTTCA
* *
1218881 TCCTATTTGACGTATTGTTACCACCTTGGTTAGATTCTTTTCA
1 TCCTATTTGACGTATGGTTACCACCTTGGTCAGATTCTTTTCA
1218924 T
1 T
1218925 TTCGATTTGA
Statistics
Matches: 134, Mismatches: 31, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
40 5 0.04
41 2 0.01
42 4 0.03
43 5 0.04
44 73 0.54
45 32 0.24
46 2 0.01
47 6 0.04
48 5 0.04
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (43 bp):
TCCTATTTGACGTATGGTTACCACCTTGGTCAGATTCTTTTCA
Found at i:1218925 original size:177 final size:176
Alignment explanation
Indices: 1218677--1219088 Score: 425
Period size: 177 Copynumber: 2.3 Consensus size: 176
1218667 TGACGTAACA
** * * *
1218677 TTACCACCCTACTCAAATATGCCTCTCTCCTATCTAACGTATGGTTACTACCTTGGTCACATTCT
1 TTACCACCCTGGTCAAATCTACCTCTCTCCTATCTAACGTATGGTTACCACCTTGGTCACATTCT
** * * * * *
1218742 TTTCATTTTC-ATTTGATGTATGGTTACCATATTGGCCAAA-TCTGCCTCTTTCATGTTTCACGT
66 TTTCA-TTTCGATTTGAAATATGGTTACCATAGTGGCCAAACTCT-CCTCTTTCACGTCTAACAT
* *
1218805 ATGGTTACCACCATGGTCAGATTCTTTTCATACCTG-TTTGAATGTATGG
129 ATGGTTACCACCATGGTAAGATTCTTTTCATACC-GATTTG-ATATATGG
* * * * * * *
1218854 TTACCACCTTGGTCAAATCTCCCTCTCTCCTATTTGACGTATTGTTACCACCTTGGTTAGATTCT
1 TTACCACCCTGGTCAAATCTACCTCTCTCCTATCTAACGTATGGTTACCACCTTGGTCACATTCT
** * ** *
1218919 TTTCATTTCGATTTGAAATATGGTTACTGTCGTGGTTAAACTCTCCTCTTTCCCGTCTAACATAT
66 TTTCATTTCGATTTGAAATATGGTTACCATAGTGGCCAAACTCTCCTCTTTCACGTCTAACATAT
** * * **
1218984 GGTTATGACCCTGGTAATATTCTTTTCATTTCGATTTGATATATGG
131 GGTTACCACCATGGTAAGATTCTTTTCATACCGATTTGATATATGG
* * * * *
1219030 TTACCACCCTGGTCAAATCTACCTCTCTCCTGTCTGACATATGGTTACTACCCTGGTCA
1 TTACCACCCTGGTCAAATCTACCTCTCTCCTATCTAACGTATGGTTACCACCTTGGTCA
1219089 AATCTACCTC
Statistics
Matches: 191, Mismatches: 41, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
176 62 0.32
177 126 0.66
178 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (176 bp):
TTACCACCCTGGTCAAATCTACCTCTCTCCTATCTAACGTATGGTTACCACCTTGGTCACATTCT
TTTCATTTCGATTTGAAATATGGTTACCATAGTGGCCAAACTCTCCTCTTTCACGTCTAACATAT
GGTTACCACCATGGTAAGATTCTTTTCATACCGATTTGATATATGG
Found at i:1218945 original size:44 final size:44
Alignment explanation
Indices: 1218804--1219044 Score: 107
Period size: 44 Copynumber: 5.5 Consensus size: 44
1218794 ATGTTTCACG
* ** *
1218804 TATGGTTACCACCATGGTCAGATTCTTTTCATACCTG-TTTGAATG
1 TATGGTTACCACCCTGGTCAGATTCTTTTCATTTC-GATTTGAA-A
* * ** * * **
1218849 TATGGTTACCACCTTGGTCA-AATCTCCCTC-TCTCCTATTTGACG
1 TATGGTTACCACCCTGGTCAGATTCT-TTTCAT-TTCGATTTGAAA
* * *
1218893 TATTGTTACCACCTTGGTTAGATTCTTTTCATTTCGATTTGAAA
1 TATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGAAA
*** * * * * ** *
1218937 TATGGTTACTGTCGTGGTTAAACTCTCCTC-TTTCCCG-TCT-AACA
1 TATGGTTACCACCCTGGTCAGATTCTTTTCATTT--CGATTTGAA-A
** * * *
1218981 TATGGTTATGACCCTGGTAATATTCTTTTCATTTCGATTTGATA
1 TATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGAAA
1219025 TATGGTTACCACCCTGGTCA
1 TATGGTTACCACCCTGGTCA
1219045 AATCTACCTC
Statistics
Matches: 144, Mismatches: 41, Indels: 23
0.69 0.20 0.11
Matches are distributed among these distances:
43 7 0.05
44 98 0.68
45 39 0.27
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41
Consensus pattern (44 bp):
TATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGAAA
Found at i:1219072 original size:44 final size:44
Alignment explanation
Indices: 1219024--1219124 Score: 157
Period size: 44 Copynumber: 2.3 Consensus size: 44
1219014 TCGATTTGAT
*
1219024 ATATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTCTGAC
1 ATATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTCTAAC
* * *
1219068 ATATGGTTACTACCCTGGTCAAATCTACCTCTTTCTTGTCTAAC
1 ATATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTCTAAC
*
1219112 GTATGGTTACCAC
1 ATATGGTTACCAC
1219125 TCTAGTTAGA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.35
Consensus pattern (44 bp):
ATATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTCTAAC
Found at i:1219118 original size:132 final size:131
Alignment explanation
Indices: 1218936--1219222 Score: 308
Period size: 132 Copynumber: 2.2 Consensus size: 131
1218926 TCGATTTGAA
** * * ** *
1218936 ATATGGTTACTGTCGTGGTTAAACTCTCCTCTTTCCCGTCTAACATATGGTTATGACCCTGGTAA
1 ATATGGTTACTACCCTGGTCAAA-TCTCCTCTTTCCCGTCTAACATATGGTTACCACCCTAGTAA
* * * * * *
1219001 TATTCTTTTCATT-TCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTCT
65 GATTCTTTTCATTCT-GATTTCATATATGATTACCACCCTGGTCAAATCTACCACCCTCCTATCT
*
1219065 GAC
129 AAC
** * * *
1219068 ATATGGTTACTACCCTGGTCAAATCTACCTCTTTCTTGTCTAACGTATGGTTACCACTCTAGTTA
1 ATATGGTTACTACCCTGGTCAAATCT-CCTCTTTCCCGTCTAACATATGGTTACCACCCTAGTAA
* * *
1219133 GATTCTTTTTATTCTGATTTCATGTATGATTACCACCCTGGTCGAATCTACCACCCTCCTATCTA
65 GATTCTTTTCATTCTGATTTCATATATGATTACCACCCTGGTCAAATCTACCACCCTCCTATCTA
1219198 AC
130 AC
* * *
1219200 GTAT-GTTACCACCTTGGTCAAAT
1 ATATGGTTACTACCCTGGTCAAAT
1219223 TCATTTCATT
Statistics
Matches: 128, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
131 20 0.16
132 107 0.84
133 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (131 bp):
ATATGGTTACTACCCTGGTCAAATCTCCTCTTTCCCGTCTAACATATGGTTACCACCCTAGTAAG
ATTCTTTTCATTCTGATTTCATATATGATTACCACCCTGGTCAAATCTACCACCCTCCTATCTAA
C
Found at i:1219260 original size:44 final size:43
Alignment explanation
Indices: 1219200--1219321 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 43
1219190 CCTATCTAAC
1219200 GTAT-GTTACCACCTTGGTCAAATTCATTTCATTTCAATGTGAT
1 GTATGGTTACCACCTTGGTCAAATTC-TTTCATTTCAATGTGAT
* * * **
1219243 GTATGGTTACCATCTTGGTCAAA-TCTGTTTATCTCCTGTGTGAT
1 GTATGGTTACCACCTTGGTCAAATTCT-TTCAT-TTCAATGTGAT
*
1219287 GTATGGTTACTACCTTGGTCAAATTCTTTTCATTT
1 GTATGGTTACCACCTTGGTCAAATTC-TTTCATTT
1219322 TGATTTGACA
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
42 1 0.02
43 10 0.15
44 47 0.72
45 6 0.09
46 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.44
Consensus pattern (43 bp):
GTATGGTTACCACCTTGGTCAAATTCTTTCATTTCAATGTGAT
Found at i:1219379 original size:88 final size:88
Alignment explanation
Indices: 1219064--1219513 Score: 273
Period size: 88 Copynumber: 5.1 Consensus size: 88
1219054 CTCTCCTGTC
* * * * * * * * *
1219064 TGACATATGGTTACTACCCTGGTCAAATCTACCTCTTTCTTGTCTAACGTATGGTTACCA-CTCT
1 TGACGTATGGTTACCATCTTGGTTAAATCTACTTCTTTCCTATCTGACGTATGGTTACCAGC-CT
* * * *
1219128 AGTTAGATTCTTTTTATTCTGATT
65 AGTCAAATTCTTTTCATTTTGATT
* * * * * ** ** ** *
1219152 TCATGTATGATTACCACCCTGGTCGAATCTACCACCCTCCTATCTAACGTAT-GTTACCA-CCTT
1 TGACGTATGGTTACCATCTTGGTTAAATCTACTTCTTTCCTATCTGACGTATGGTTACCAGCC-T
* * ** *
1219215 GGTCAAATTCATTTCATTTCAATG
65 AGTCAAATTCTTTTCATTTTGATT
* * ** * * * * * *
1219239 TGATGTATGGTTACCATCTTGGTCAAATCTGTTTATCTCCTGTGTGATGTATGGTTACTA-CCTT
1 TGACGTATGGTTACCATCTTGGTTAAATCTACTTCTTTCCTATCTGACGTATGGTTACCAGCC-T
*
1219303 GGTCAAATTCTTTTCATTTTGATT
65 AGTCAAATTCTTTTCATTTTGATT
* * * *
1219327 TGACATATGATTACCATTTTGGTTAAATCTACTTCTTTCCTATCTGACGTATGGTTACCATCCTA
1 TGACGTATGGTTACCATCTTGGTTAAATCTACTTCTTTCCTATCTGACGTATGGTTACCAGCCTA
* *
1219392 GTCAGATTCGTTTT-ATTGCT-ATT
66 GTCAAATTC-TTTTCATT-TTGATT
* * ** * * * * * * *
1219415 GGACGTATGGTTACCACCTTGGTTATGTCCACCTCCTTCTTATATGACATATGGTTACTAGCCTA
1 TGACGTATGGTTACCATCTTGGTTAAATCTACTTCTTTCCTATCTGACGTATGGTTACCAGCCTA
*
1219480 GTCAAATTCTTTTCCTTTTGATT
66 GTCAAATTCTTTTCATTTTGATT
*
1219503 AGACGTATGGT
1 TGACGTATGGT
1219514 AACTGCCCTC
Statistics
Matches: 280, Mismatches: 75, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
86 1 0.00
87 66 0.24
88 206 0.74
89 7 0.03
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (88 bp):
TGACGTATGGTTACCATCTTGGTTAAATCTACTTCTTTCCTATCTGACGTATGGTTACCAGCCTA
GTCAAATTCTTTTCATTTTGATT
Found at i:1219927 original size:87 final size:88
Alignment explanation
Indices: 1219836--1220103 Score: 231
Period size: 87 Copynumber: 3.1 Consensus size: 88
1219826 TTCCATTTCG
* * ** *
1219836 ATTTGACGTAAAGTTACCATCTTAGT-CAATATGCCTCCCTCCTACCTAATGAATGGTTACCACT
1 ATTTGACGTAAAGCTACCACCTTAGTCCAATACACCTCCCTCCTACCTAATGAATGGTTACCACC
1219900 CTGGTCAGATTCTTTTCTTTCCT
66 CTGGTCAGATTCTTTTCTTTCCT
* * * * *
1219923 ATTTGACGTATAGCTACCACCTTAGTCCAATCCACCTCCTTCCTATCTAATGTATGGTTACCACC
1 ATTTGACGTAAAGCTACCACCTTAGTCCAATACACCTCCCTCCTACCTAATGAATGGTTACCACC
* *
1219988 CTGGTCAGATT-TTTCCATT-CT
66 CTGGTCAGATTCTTTTCTTTCCT
* * * * * * * ** * * *
1220009 GATTTGAGGT-ATGTTTACCACCCTT-GTCAAATCCACATCCTTCCTATTTAACGTATGGTTAAC
1 -ATTTGACGTAAAG-CTACCA-CCTTAGTCCAATACACCTCCCTCCTACCTAATGAATGGTTACC
* * *
1220072 AACTTGGTCAGATTCTTTTCATTCCT
63 ACCCTGGTCAGATTCTTTTCTTTCCT
1220098 ATTTGA
1 ATTTGA
1220104 TGCATGGTTA
Statistics
Matches: 151, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
86 3 0.02
87 87 0.58
88 59 0.39
89 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (88 bp):
ATTTGACGTAAAGCTACCACCTTAGTCCAATACACCTCCCTCCTACCTAATGAATGGTTACCACC
CTGGTCAGATTCTTTTCTTTCCT
Found at i:1220131 original size:88 final size:88
Alignment explanation
Indices: 1219888--1220148 Score: 273
Period size: 88 Copynumber: 3.0 Consensus size: 88
1219878 TACCTAATGA
* * * *
1219888 ATGGTT-ACCACTCTGGTCAGATTCTTTTCTTTCCTATTTGACGTATAGCTACCA-CCTTAGTCC
1 ATGGTTAACAACT-TGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTT-G-CC
* *
1219951 -AATCCACCTCCTTCCTATCTAATGT
63 AAATCCACATCCTTCCTATCTAACGT
* * * * * * *
1219976 ATGGTTACCACCCTGGTCAGATT-TTTCCATT-CTGATTTGAGGTATGTTTACCACCCTTGTCAA
1 ATGGTTAACAACTTGGTCAGATTCTTTTCATTCCT-ATTTGACGTATGGTTACCACCCTTGCCAA
*
1220039 ATCCACATCCTTCCTATTTAACGT
65 ATCCACATCCTTCCTATCTAACGT
* *
1220063 ATGGTTAACAACTTGGTCAGATTCTTTTCATTCCTATTTGATGCATGGTTACCACCCTTGCCAAA
1 ATGGTTAACAACTTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTTGCCAAA
* *
1220128 TCCA-ATTCCTTCTTGTCTAAC
66 TCCACA-TCCTTCCTATCTAAC
1220149 ATGTCAGTTT
Statistics
Matches: 141, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
86 3 0.02
87 65 0.46
88 69 0.49
89 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (88 bp):
ATGGTTAACAACTTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTTGCCAAA
TCCACATCCTTCCTATCTAACGT
Found at i:1220385 original size:88 final size:88
Alignment explanation
Indices: 1220213--1220630 Score: 301
Period size: 88 Copynumber: 4.8 Consensus size: 88
1220203 TGTCACTATT
* * * * * * * * * * *
1220213 CTATCTAACATATGGTTACCACCCTAGTCAAATTCTTTTCATTTTGATTGGACGTCTGATTACCA
1 CTATCTGACGTATGGTTACTACCCTGGTTAGATTTTTTTCATTTCGATTTGACGTATGGTTACCA
* * * *
1220278 -TTCTGGTTAAATCTACCTCTCCC
66 CCT-TGGTCAAATCCACCTCTCTC
*
1220301 CTATCTGACGTATGGTTACTACCTTGGTTAGATTTTTTTCATTTCGATTTGACGTATGGTTACCA
1 CTATCTGACGTATGGTTACTACCCTGGTTAGATTTTTTTCATTTCGATTTGACGTATGGTTACCA
* * * ** *
1220366 TCTTGGACAACTCTGCCTCTCTT
66 CCTTGGTCAAATCCACCTCTCTC
* * * * * * * * * *
1220389 ATGTTTGACGTATAGTTACCACCCT-GTTCAGATTGTTTTCATTCCTATTTAACATATGGTTACC
1 CTATCTGACGTATGGTTACTACCCTGGTT-AGATTTTTTTCATTTCGATTTGACGTATGGTTACC
*
1220453 ACCTTAGTCAAATCCACCTC-CTTC
65 ACCTTGGTCAAATCCACCTCTC-TC
* * * *
1220477 CTATCTGACGTATGGTTACCT-CCCTAGTCAG-TTTTTTTCA-TTCTGATTTAACGTATGTTTAC
1 CTATCTGACGTATGGTTA-CTACCCTGGTTAGATTTTTTTCATTTC-GATTTGACGTATGGTTAC
* * *
1220539 CACCCTGGTCAAATCCATCTCTTTC
64 CACCTTGGTCAAATCCACCTCTCTC
* * * * * * * *
1220564 CTATCTAATGTATGGTTAAC-ACCTTGCTTAGATTCTTTTCATTCCTATTTGACGCATGGTTACC
1 CTATCTGACGTATGGTT-ACTACCCTGGTTAGATTTTTTTCATTTCGATTTGACGTATGGTTACC
1220628 ACC
65 ACC
1220631 CTAGTCTGAC
Statistics
Matches: 255, Mismatches: 64, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
86 2 0.01
87 69 0.27
88 178 0.70
89 6 0.02
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (88 bp):
CTATCTGACGTATGGTTACTACCCTGGTTAGATTTTTTTCATTTCGATTTGACGTATGGTTACCA
CCTTGGTCAAATCCACCTCTCTC
Found at i:1220451 original size:44 final size:43
Alignment explanation
Indices: 1220396--1221258 Score: 167
Period size: 44 Copynumber: 19.4 Consensus size: 43
1220386 CTTATGTTTG
* *
1220396 ACGTATAGTTACCACCCTGTTCAGATTGTTTTCATTCCTATTTA
1 ACGTATGGTTACCACCCTG-TCAGATTCTTTTCATTCCTATTTA
* * * * *** * * *
1220440 ACATATGGTTACCACCTTAGTCAAATCCACCTCCTTCCTATCTG
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCTATTTA
* *
1220484 ACGTATGGTTACCTCCCTAGTCAG-TTTTTTTCATT-CTGATTTA
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCT-ATTTA
* * * * * * *
1220527 ACGTATGTTTACCACCCTGGTCAAATCCATCTCTTTCCTATCTA
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCTATTTA
* * * * *
1220571 ATGTATGGTTAACACCTTGCTTAGATTCTTTTCATTCCTATTTG
1 ACGTATGGTTACCACCCTG-TCAGATTCTTTTCATTCCTATTTA
* * *
1220615 ACGCATGGTTACCACCCTAGTCTGACATGTCAAATTCTTTTCATTTCTATTTG
1 ACGTATGGTTACCACCCT-G--T--CA-G----ATTCTTTTCATTCCTATTTA
* * * * * * **
1220668 ATGTAAGGTTACGACCCTGGTTAAATT-TGTCTCTC-TT-TTATCAA
1 ACGTATGGTTACCACCCT-GTCAGATTCT-T-T-TCATTCCTATTTA
* * * *
1220712 ACGTCTGGTTACCACCCTAGTCAAATTCATTTCATT-CTGATTTG
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCT-ATTTA
** * * * * * *
1220756 ACGTATCATTACCACCCTAGTCAAATATGCCTCTC--TCTTATCTG
1 ACGTATGGTTACCACCCT-GTCAGAT-T-CTTTTCATTCCTATTTA
* * * * * *
1220800 ACGTATGGTTACTACCTTGGTCACATTCATTTCATT-TTGATTTG
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCT-ATTTA
* *** * * * * *
1220844 ACATATGGTTACCATTTTTTCCAAATCTACCTTT--TTCATGTTTA
1 ACGTATGGTTACCACCCTGT-CAGAT-T-CTTTTCATTCCTATTTA
* *
1220888 ACATATGGTTATCACCCTGGTCAGATTCTTTTCATTCCTATTTA
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCTATTTA
* ** * * ** * * * * *
1220932 ACGTATGGTTGCTGCCCTAGTCAAACTCTCCTCTTTCTTGTCTG
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCTATTTA
* * * * * *
1220976 ACATATGGTTACGACTCTGGTCAGATTCTTTTCATTTCGATTTG
1 ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCTATTTA
* * * * * * * *
1221020 ATGGACGGTTACAACCCTAGTCAAATCTACCTCTC-TT-CTATCTA
1 ACGTATGGTTACCACCCT-GTCAGAT-T-CTTTTCATTCCTATTTA
* * * * * * *
1221064 ACCTATGGTTACTACCTCAGTAAAATTCTTTTCATTCCGATTTG
1 ACGTATGGTTACCACC-CTGTCAGATTCTTTTCATTCCTATTTA
* * * *
1221108 ACATATGGTTACCACACTTGACAGATTCTTTTCATTCCTATTTG
1 ACGTATGGTTACCAC-CCTGTCAGATTCTTTTCATTCCTATTTA
* * * * * *** *
1221152 AC-TCATGCTTACCACCTTGGGCAAATCCACCTC-TTTCT-TGTTA
1 ACGT-ATGGTTACCACCCT-GTCAGATTCTTTTCATTCCTAT-TTA
* * *
1221195 GATGTATGGTTACCACCCTGGTCTGATTCTTTTCATT-CTAATTTG
1 -ACGTATGGTTACCACCCT-GTCAGATTCTTTTCATTCCT-ATTTA
*
1221240 ACGTATGATTACCACCCTG
1 ACGTATGGTTACCACCCTG
1221259 GTCAAATCTA
Statistics
Matches: 577, Mismatches: 195, Indels: 95
0.67 0.22 0.11
Matches are distributed among these distances:
42 17 0.03
43 53 0.09
44 430 0.75
45 22 0.04
46 17 0.03
48 1 0.00
49 2 0.00
51 1 0.00
53 34 0.06
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (43 bp):
ACGTATGGTTACCACCCTGTCAGATTCTTTTCATTCCTATTTA
Found at i:1220567 original size:512 final size:507
Alignment explanation
Indices: 1219287--1220941 Score: 1705
Period size: 512 Copynumber: 3.3 Consensus size: 507
1219277 CCTGTGTGAT
* * * * *
1219287 GTATGGTTACTACCTTGGTCAAATTCTTTTCATTTTGATTTGACATATGATTACCATTTTGGTTA
1 GTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTCA
* * * * * *
1219352 AATCTACTTCT-TTCCTATCTGACGTATGGTTACCATCCTAGTCAGATTCGTTTT-ATTGCTATT
66 AATCTACCTCTCTTCATATCTAACGTATGGTTACCACCCTGGTCAGATTC-TTTTCATTCCTATT
** * * ** * * * *
1219415 GGACGTATGGTTACCACCTTGGTTATGTCCACCTCCTTCTTATATGACATATGGTTA-CTAGCCT
130 TAACGTATGGTTACCACCTTAGTCAAATCCACCTCCTTCCTATCTGACGTATGGTTACCT-CCCT
* * * * * * ** *
1219479 AGTCAAATTCTTTTCCTTTTGA-TTAGACGTATGGTAACTGCCCTCGTCAAATCCACCTCCTACC
194 AGTC-AGTTTTTTTCATTCTGATTTA-ACGTATGTTTACCACCCTCGTCAAATCCA-CTCCTTCC
* * * * *
1219543 TATCTGACGTATGGAT-ACAACCTAGCTTTA-ATTATTTTCGTTCCTATTTGACTGCATGGTTAC
256 TATCTAACGTATGGTTAACAA-CTTGC-TTAGATTCTTTTCATTCCTATTTGA-TGCATGGTTAC
* * * *
1219606 CAACCTAGTCAAATCCACCTCTTGCTTGTCTGACATGTTAGATTCTTTTCATTTTGATTTAATGC
318 C-ACCT-GCCAAATCCA-ATCTT-CTTGTCTGACATGTCAGATTCTTTTCATTTTGATTTGATGC
* * * *
1219671 ATGGTTCCCACCCTTGTTAAATTTGAT-TCTCTTCTATCCAACGTATGGTTACCACCCTGGTCAA
379 ATGGTTACCACCCTGGTTAAATTTG-TCTCTCTTCTATCAAACGTATGGTTACCACCCTAGTCAA
* * *
1219735 ATTATTTTCATTCTGATTTGAC-TTGATTATCACCCTAGTTAAATCTGCCTCTCTCTTATTTGAC
443 ATTCTTTTCATTCTGATTTGACGTTGATTACCACCCTAGTTAAATCTGCCTCTCTCTTATCTGAC
* * * * ** *
1219799 GTATGGTTACTACCTCGATCACATTCTTTCCATTTCGATTTGACGTAAAGTTACCATCTTAGTC-
1 GTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTCA
* * * * * * * * *
1219863 AATATGCCTC-CCTCCTACCTAATGAATGGTTACCACTCTGGTCAGATTCTTTTCTTTCCTATTT
66 AATCTACCTCTCTTCATATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTT
* * * * * * * *
1219927 GACGTATAGCTACCACCTTAGTCCAATCCACCTCCTTCCTATCTAATGTATGGTTACCACCCTGG
131 AACGTATGGTTACCACCTTAGTCAAATCCACCTCCTTCCTATCTGACGTATGGTTACCTCCCTAG
* * * * * *
1219992 TCAGATTTTTCCATTCTGATTTGAGGTATGTTTACCACCCTTGTCAAATCCACATCCTTCCTATT
196 TCAGTTTTTTTCATTCTGATTTAACGTATGTTTACCACCCTCGTCAAATCCAC-TCCTTCCTATC
* *
1220057 TAACGTATGGTTAACAACTTGGTCAGATTCTTTTCATTCCTATTTGATGCATGGTTACCACCCTT
260 TAACGTATGGTTAACAACTTGCTTAGATTCTTTTCATTCCTATTTGATGCATGGTTACCA-CC-T
* * **
1220122 GCCAAATCCAATTCCTTCTTGTCTAACATGTCAGTTTCTTTTCATTTTGATTTGACACATGGTTA
323 GCCAAATCCAA-T-CTTCTTGTCTGACATGTCAGATTCTTTTCATTTTGATTTGATGCATGGTTA
* * * *
1220187 CCACCCTGGTTAAATTTGTCACTATTCTATCTAACATATGGTTACCACCCTAGTCAAATTCTTTT
386 CCACCCTGGTTAAATTTGTCTCTCTTCTATCAAACGTATGGTTACCACCCTAGTCAAATTCTTTT
* * ** * * * *
1220252 CATTTTGATTGGACGTCTGATTACCATTCTGGTTAAATCTACCTCTCCCCTATCTGAC
451 CATTCTGATTTGACGT-TGATTACCACCCTAGTTAAATCTGCCTCTCTCTTATCTGAC
* * * * *
1220310 GTATGGTTACTACCTTGGTTAGATTTTTTTCATTTCGATTTGACGTATGGTTACCATCTTGGACA
1 GTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTCA
* * * * * * * *
1220375 ACTCTGCCTCTCTT-ATGTTTGACGTATAGTTACCACCCTGTTCAGATTGTTTTCATTCCTATTT
66 AATCTACCTCTCTTCATATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTT
*
1220439 AACATATGGTTACCACCTTAGTCAAATCCACCTCCTTCCTATCTGACGTATGGTTACCTCCCTAG
131 AACGTATGGTTACCACCTTAGTCAAATCCACCTCCTTCCTATCTGACGTATGGTTACCTCCCTAG
* *
1220504 TCAGTTTTTTTCATTCTGATTTAACGTATGTTTACCACCCTGGTCAAATCCATCTCTTTCCTATC
196 TCAGTTTTTTTCATTCTGATTTAACGTATGTTTACCACCCTCGTCAAATCCA-CTCCTTCCTATC
* * *
1220569 TAATGTATGGTTAACACCTTGCTTAGATTCTTTTCATTCCTATTTGACGCATGGTTACCA-C--C
260 TAACGTATGGTTAACAACTTGCTTAGATTCTTTTCATTCCTATTTGATGCATGGTTACCACCTGC
* * * *
1220631 C---T---A-------GTCTGACATGTCAAATTCTTTTCATTTCT-ATTTGATGTAAGGTTACGA
325 CAAATCCAATCTTCTTGTCTGACATGTCAGATTCTTTTCATTT-TGATTTGATGCATGGTTACCA
* * *
1220682 CCCTGGTTAAATTTGTCTCTCTTTTATCAAACGTCTGGTTACCACCCTAGTCAAATTCATTTCAT
389 CCCTGGTTAAATTTGTCTCTCTTCTATCAAACGTATGGTTACCACCCTAGTCAAATTCTTTTCAT
* * *
1220747 TCTGATTTGACGTATCATTACCACCCTAGTCAAATATGCCTCTCTCTTATCTGAC
454 TCTGATTTGACGT-TGATTACCACCCTAGTTAAATCTGCCTCTCTCTTATCTGAC
* * **
1220802 GTATGGTTACTACCTTGGTCACATTCATTTCATTTTGATTTGACATATGGTTACCAT-TTTTTCC
1 GTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGT-C
* * * * *
1220866 AAATCTACCT-TTTTCATGTTTAACATATGGTTATCACCCTGGTCAGATTCTTTTCATTCCTATT
65 AAATCTACCTCTCTTCATATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATT
1220930 TAACGTATGGTT
130 TAACGTATGGTT
1220942 GCTGCCCTAG
Statistics
Matches: 942, Mismatches: 181, Indels: 60
0.80 0.15 0.05
Matches are distributed among these distances:
491 5 0.01
492 253 0.27
493 1 0.00
501 1 0.00
504 1 0.00
507 2 0.00
508 2 0.00
509 136 0.14
510 85 0.09
511 187 0.20
512 266 0.28
513 3 0.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (507 bp):
GTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTCA
AATCTACCTCTCTTCATATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTT
AACGTATGGTTACCACCTTAGTCAAATCCACCTCCTTCCTATCTGACGTATGGTTACCTCCCTAG
TCAGTTTTTTTCATTCTGATTTAACGTATGTTTACCACCCTCGTCAAATCCACTCCTTCCTATCT
AACGTATGGTTAACAACTTGCTTAGATTCTTTTCATTCCTATTTGATGCATGGTTACCACCTGCC
AAATCCAATCTTCTTGTCTGACATGTCAGATTCTTTTCATTTTGATTTGATGCATGGTTACCACC
CTGGTTAAATTTGTCTCTCTTCTATCAAACGTATGGTTACCACCCTAGTCAAATTCTTTTCATTC
TGATTTGACGTTGATTACCACCCTAGTTAAATCTGCCTCTCTCTTATCTGAC
Found at i:1220856 original size:88 final size:88
Alignment explanation
Indices: 1220643--1221122 Score: 328
Period size: 88 Copynumber: 5.5 Consensus size: 88
1220633 AGTCTGACAT
* * * * * * ** *
1220643 GTCAAATTCTTTTCATTTCT-ATTTGATGTAAGGTTACGACCCTGGTTAAATTTGTCTCTCTTTT
1 GTCAAATTCTTTTCA-TTCTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTT
* * * * * *
1220707 ATCAAACGTCTGGTTACCACCCTA
65 ATCTAACATATGGTTACTACCTTG
* ** * *
1220731 GTCAAATTCATTTCATTCTGATTTGACGTATCATTACCACCCTAGTCAAATATGCCTCTCTCTTA
1 GTCAAATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTTA
* *
1220796 TCTGACGTATGGTTACTACCTTG
66 TCTAACATATGGTTACTACCTTG
* * * * ** ** * * *
1220819 GTCACATTCATTTCATTTTGATTTGACATATGGTTACCA-TTTTTTCCAAATCTACCTTTTTCAT
1 GTCAAATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGT-CAAATCTACCTCTCTCTT
* * *
1220883 GTTTAACATATGGTTA-TCACCCTG
65 ATCTAACATATGGTTACT-ACCTTG
* * * ** *
1220907 GTCAGATTCTTTTCATTCCT-ATTTAACGTATGGTTGCTGCCCTAGTCAAACTCT-CCTCTTTCT
1 GTCAAATTCTTTTCATT-CTGATTTGACGTATGGTTACCACCCTAGTCAAA-TCTACCTCTCTCT
* * *
1220970 TGTCTGACATATGGTTACGA-CTCTG
64 TATCTAACATATGGTTACTACCT-TG
* * * * *
1220995 GTCAGATTCTTTTCATT-TCGATTTGATGGACGGTTACAACCCTAGTCAAATCTACCTCTCT-TC
1 GTCAAATTCTTTTCATTCT-GATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCT-
* **
1221058 TATCTAACCTATGGTTACTACCTCA
64 TATCTAACATATGGTTACTACCTTG
* * *
1221083 GTAAAATTCTTTTCATTCCGATTTGACATATGGTTACCAC
1 GTCAAATTCTTTTCATTCTGATTTGACGTATGGTTACCAC
1221123 ACTTGACAGA
Statistics
Matches: 302, Mismatches: 76, Indels: 28
0.74 0.19 0.07
Matches are distributed among these distances:
86 1 0.00
87 12 0.04
88 281 0.93
89 8 0.03
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (88 bp):
GTCAAATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTTA
TCTAACATATGGTTACTACCTTG
Found at i:1221073 original size:176 final size:175
Alignment explanation
Indices: 1220643--1221122 Score: 423
Period size: 176 Copynumber: 2.7 Consensus size: 175
1220633 AGTCTGACAT
* * * * * ** *
1220643 GTCAAATTCTTTTCATTTCTATTTGATGTAAGGTTACGACCCTGGTTAAATTTGTCTCTCTTTTA
1 GTCAAATTCTTTTCATTTCGATTTGATGTAAGGTTACAACCCTAGTCAAATCTACCTCTCTTCTA
* * * * **
1220708 TCAAACGTCTGGTTACCACCCTAGTCAAATTCATTTCATT-CTGATTTGACGTATCATTACCACC
66 TCTAACATATGGTTA-CACCCTAGTCAAATTCTTTTCATTCCT-ATTTGACGTATGGTTACCACC
* *
1220772 CTAGTCAAATATGCCTCTCTCTTATCTGACGTATGGTTACTACCTTG
129 CTAGTCAAATATGCCTCTCTCTTATCTGACATATGGTTACGACCTTG
* * * ** * * ** ** *
1220819 GTCACATTCATTTCATTTTGATTTGACATATGGTTACCA-TTTTTTCCAAATCTACCT-TTTTCA
1 GTCAAATTCTTTTCATTTCGATTTGATGTAAGGTTACAACCCTAGT-CAAATCTACCTCTCTTC-
* * * * * * **
1220882 TGTTTAACATATGGTTATCACCCTGGTCAGATTCTTTTCATTCCTATTTAACGTATGGTTGCTGC
64 TATCTAACATATGGTTA-CACCCTAGTCAAATTCTTTTCATTCCTATTTGACGTATGGTTACCAC
* * *
1220947 CCTAGTCAAACTCT-CCTCTTTCTTGTCTGACATATGGTTACGA-CTCTG
128 CCTAGTCAAA-TATGCCTCTCTCTTATCTGACATATGGTTACGACCT-TG
* * *
1220995 GTCAGATTCTTTTCATTTCGATTTGATGGACGGTTACAACCCTAGTCAAATCTACCTCTCTTCTA
1 GTCAAATTCTTTTCATTTCGATTTGATGTAAGGTTACAACCCTAGTCAAATCTACCTCTCTTCTA
* * * *
1221060 TCTAACCTATGGTTACTA-CCTCAGTAAAATTCTTTTCATTCCGATTTGACATATGGTTACCAC
66 TCTAACATATGGTTAC-ACCCT-AGTCAAATTCTTTTCATTCCTATTTGACGTATGGTTACCAC
1221123 ACTTGACAGA
Statistics
Matches: 232, Mismatches: 63, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
175 11 0.05
176 211 0.91
177 10 0.04
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (175 bp):
GTCAAATTCTTTTCATTTCGATTTGATGTAAGGTTACAACCCTAGTCAAATCTACCTCTCTTCTA
TCTAACATATGGTTACACCCTAGTCAAATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCT
AGTCAAATATGCCTCTCTCTTATCTGACATATGGTTACGACCTTG
Found at i:1221265 original size:88 final size:87
Alignment explanation
Indices: 1221106--1221722 Score: 445
Period size: 88 Copynumber: 7.0 Consensus size: 87
1221096 CATTCCGATT
* * * * * * *
1221106 TGACATATGGTTACCACACTTGACAGATTCTTTTCATTCCTATTTGAC-TCATGCTTACCACCTT
1 TGACGTATGGTTACCACCCTGGTCTGATTCTTTTCATT-CTATTTGACGT-ATGGTTACCACCCT
* *
1221170 GGGCAAATCCACCTCTTTCTTGT-
64 AGTCAAATCCACCTCTTTCTTGTC
* *
1221193 TAGATGTATGGTTACCACCCTGGTCTGATTCTTTTCATTCTAATTTGACGTATGATTACCACCCT
1 T-GACGTATGGTTACCACCCTGGTCTGATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCCT
* * * **
1221258 GGTCAAATCTACCACCCTCTTGTC
64 AGTCAAATCCACCTCTTTCTTGTC
* * ** * * * * * *
1221282 TAACGTATGGTTACCACCTTGGTCAAACTCATTTCATTTCGATTTGACGTATGGTTACCATCTTG
1 TGACGTATGGTTACCACCCTGGTCTGATTCTTTTCA-TTCTATTTGACGTATGGTTACCACCCTA
** ** * * *
1221347 GTCAAATCTGCCAATCTCCTGTG
65 GTCAAATCCACCTCTTTCTTGTC
* * * ** * * * *
1221370 TGATGTATGGTTACTACCTTGGTCAAATTCTTTTCATT-TAGATTTGGCATATGGTTACCATCTT
1 TGACGTATGGTTACCACCCTGGTCTGATTCTTTTCATTCT--ATTTGACGTATGGTTACCACCCT
** * * *
1221434 AGTCAAATCTGCTTCTTTCCTATC
64 AGTCAAATCCACCTCTTTCTTGTC
* * * * *
1221458 TGACATATGGTTACCGCCCT-GTTTAGATTCTTTTCATTCCTATTTGGCATATGGTTACCACCCT
1 TGACGTATGGTTACCACCCTGGTCT-GATTCTTTTCATT-CTATTTGACGTATGGTTACCACCCT
* *
1221522 AGTTAAATCCACCTCCTTT-TTATC
64 AGTCAAATCCACCT-CTTTCTTGTC
* * * * * * * **
1221546 GGACGCATGGTTACCACCTTAGT-TAGATTCTTTTCCTTTTGATTTGACGTATGGTAACTGCCCT
1 TGACGTATGGTTACCACCCTGGTCT-GATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCCT
1221610 AGTCAAATCCACCTCTTTCTTGTC
64 AGTCAAATCCACCTCTTTCTTGTC
* ** * * *
1221634 TGACGTATGGCTACCACCCAAGTCTAATTCTTTTTATTCTTATTTGACGCATGGTTACCACCCTA
1 TGACGTATGGTTACCACCCTGGTCTGATTCTTTTCATTC-TATTTGACGTATGGTTACCACCCTA
*
1221699 GTCAAATCCACCTCTTTTTTGTC
65 GTCAAATCCACCTCTTTCTTGTC
1221722 T
1 T
1221723 TACATGTCAA
Statistics
Matches: 427, Mismatches: 87, Indels: 31
0.78 0.16 0.06
Matches are distributed among these distances:
87 12 0.03
88 401 0.94
89 13 0.03
90 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (87 bp):
TGACGTATGGTTACCACCCTGGTCTGATTCTTTTCATTCTATTTGACGTATGGTTACCACCCTAG
TCAAATCCACCTCTTTCTTGTC
Found at i:1221332 original size:44 final size:42
Alignment explanation
Indices: 1221093--1221443 Score: 142
Period size: 44 Copynumber: 8.0 Consensus size: 42
1221083 GTAAAATTCT
* * * *
1221093 TTTCATTCCGATTTGACATATGGTTACCACACTT-GACAGATTC
1 TTTCATTTCGATTTGACGTATGGTTACCAC-CTTGGTCA-AATC
* * * *
1221136 TTTTCATTCCTATTTGAC-TCATGCTTACCACCTTGGGCAAATCC
1 -TTTCATTTCGATTTGACGT-ATGGTTACCACCTTGGTCAAAT-C
** * * * * *
1221180 ACCTC-TTTCTTG-TTAGATGTATGGTTACCACCCTGGTCTGATTC
1 -TTTCATTTC--GATTTGACGTATGGTTACCACCTTGGTC-AAATC
* * *
1221224 TTTTCA-TTCTAATTTGACGTATGATTACCACCCTGGTCAAATC
1 -TTTCATTTC-GATTTGACGTATGGTTACCACCTTGGTCAAATC
** * *
1221267 TACCACCCTCTT-G-TCTAACGTATGGTTACCACCTTGGTCAAACTC
1 TTTCA---T-TTCGATTTGACGTATGGTTACCACCTTGGTCAAA-TC
*
1221312 ATTTCATTTCGATTTGACGTATGGTTACCATCTTGGTCAAATC
1 -TTTCATTTCGATTTGACGTATGGTTACCACCTTGGTCAAATC
** * * * *
1221355 TGCCAATCTCCTG-TGTGATGTATGGTTACTACCTTGGTCAAATTC
1 TTTC-AT-TTC-GATTTGACGTATGGTTACCACCTTGGTCAAA-TC
* * * * *
1221400 TTTTCATTTAGATTTGGCATATGGTTACCATCTTAGTCAAATC
1 -TTTCATTTCGATTTGACGTATGGTTACCACCTTGGTCAAATC
1221443 T
1 T
1221444 GCTTCTTTCC
Statistics
Matches: 228, Mismatches: 55, Indels: 50
0.68 0.17 0.15
Matches are distributed among these distances:
42 8 0.04
43 22 0.10
44 181 0.79
45 10 0.04
46 5 0.02
47 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (42 bp):
TTTCATTTCGATTTGACGTATGGTTACCACCTTGGTCAAATC
Found at i:1221556 original size:44 final size:44
Alignment explanation
Indices: 1221508--1221718 Score: 138
Period size: 44 Copynumber: 4.8 Consensus size: 44
1221498 TATTTGGCAT
*
1221508 ATGGTTACCACCCTAGTTAAATCCACCTCCTTTTTATCGGACGC
1 ATGGTTACCACCCTAGTTAAATCCACCTCCTTTTTATCTGACGC
* * * *** * * *
1221552 ATGGTTACCACCTTAGTTAGATTCTTTTCCTTTTGATTTGACGT
1 ATGGTTACCACCCTAGTTAAATCCACCTCCTTTTTATCTGACGC
* ** * * *
1221596 ATGGTAACTGCCCTAGTCAAATCCACCT-CTTTCTTGTCTGACGT
1 ATGGTTACCACCCTAGTTAAATCCACCTCCTTT-TTATCTGACGC
* * * *** ** * *
1221640 ATGGCTACCACCCAAGTCT-AATTCTTTTTATTCTTATTTGACGC
1 ATGGTTACCACCCTAGT-TAAATCCACCTCCTTTTTATCTGACGC
* *
1221684 ATGGTTACCACCCTAGTCAAATCCACCTCTTTTTT
1 ATGGTTACCACCCTAGTTAAATCCACCTCCTTTTT
1221719 GTCTTACATG
Statistics
Matches: 115, Mismatches: 48, Indels: 8
0.67 0.28 0.05
Matches are distributed among these distances:
43 4 0.03
44 109 0.95
45 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.13, T:0.38
Consensus pattern (44 bp):
ATGGTTACCACCCTAGTTAAATCCACCTCCTTTTTATCTGACGC
Found at i:1221860 original size:88 final size:88
Alignment explanation
Indices: 1221728--1221911 Score: 233
Period size: 88 Copynumber: 2.1 Consensus size: 88
1221718 TGTCTTACAT
* * * * * *
1221728 GTCAAATTCTTTTCATTTTGATTTGATGCATGGTTACCACCCTAGTTAAATTTAACTCTCTTCTA
1 GTCAAATTCTTTTCATTCTAATTTGATGCATGATAACCACCCTAGTTAAATCTAACTCTCTCCTA
*
1221793 TCCAACGTATGGTTACCAGCTTG
66 TCCAACGTATGGTTACCAGCTTA
* * **
1221816 GTCAAATTCTTTTCATTCTAATTTGATGTATGATAACCATCCTAGTTAAATCTGCCTCTCTCCTA
1 GTCAAATTCTTTTCATTCTAATTTGATGCATGATAACCACCCTAGTTAAATCTAACTCTCTCCTA
** * *
1221881 TCTGACGTGTGGTTACCATCTTA
66 TCCAACGTATGGTTACCAGCTTA
1221904 GTCAAATT
1 GTCAAATT
1221912 TGCCTCCCAT
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (88 bp):
GTCAAATTCTTTTCATTCTAATTTGATGCATGATAACCACCCTAGTTAAATCTAACTCTCTCCTA
TCCAACGTATGGTTACCAGCTTA
Found at i:1222141 original size:44 final size:44
Alignment explanation
Indices: 1221945--1222145 Score: 172
Period size: 44 Copynumber: 4.6 Consensus size: 44
1221935 TTTTCACCGG
* *
1221945 GGTCAGATTCTTTTCATTCCTATTTGACGTATAGTTACCACCCT
1 GGTCAGATTCATTTCATTCCTATTTGACGTATAGTTACCACCTT
* * * * * * * * **
1221989 AGTTAAATCCACCTT-ATTCCTATCTGATGTATGGTTACCACCGG
1 GGTCAGATTCA-TTTCATTCCTATTTGACGTATAGTTACCACCTT
1222033 GGTCAGATTCATTTCATTCCTATTTGACGTATAGTTACCACCCTT
1 GGTCAGATTCATTTCATTCCTATTTGACGTATAGTTACCA-CCTT
* * ** * * * * *
1222078 -GTCAAATCCACCTCTTTCCTATCTAACGTATGGTTAACACCTT
1 GGTCAGATTCATTTCATTCCTATTTGACGTATAGTTACCACCTT
*
1222121 GGTCAGATTCTTTTCATTCCTATTT
1 GGTCAGATTCATTTCATTCCTATTT
1222146 AACACATGCT
Statistics
Matches: 116, Mismatches: 37, Indels: 8
0.72 0.23 0.05
Matches are distributed among these distances:
43 6 0.05
44 106 0.91
45 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.39
Consensus pattern (44 bp):
GGTCAGATTCATTTCATTCCTATTTGACGTATAGTTACCACCTT
Found at i:1222162 original size:88 final size:88
Alignment explanation
Indices: 1221939--1222145 Score: 326
Period size: 88 Copynumber: 2.4 Consensus size: 88
1221929 GTAGGATTTT
*
1221939 CACCGGGGTCAGATTCTTTTCATTCCTATTTGACGTATAGTTACCACCCTAGTTAAATCCACCTT
1 CACCGGGGTCAGATTCTTTTCATTCCTATTTGACGTATAGTTACCACCCTAGTCAAATCCACCTT
* * *
1222004 ATTCCTATCTGATGTATGGTTAC
66 ATTCCTATCTAACGTATGGTTAA
* *
1222027 CACCGGGGTCAGATTCATTTCATTCCTATTTGACGTATAGTTACCACCCTTGTCAAATCCACCTC
1 CACCGGGGTCAGATTCTTTTCATTCCTATTTGACGTATAGTTACCACCCTAGTCAAATCCACCT-
1222092 T-TTCCTATCTAACGTATGGTTAA
65 TATTCCTATCTAACGTATGGTTAA
**
1222115 CACCTTGGTCAGATTCTTTTCATTCCTATTT
1 CACCGGGGTCAGATTCTTTTCATTCCTATTT
1222146 AACACATGCT
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
88 108 0.99
89 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (88 bp):
CACCGGGGTCAGATTCTTTTCATTCCTATTTGACGTATAGTTACCACCCTAGTCAAATCCACCTT
ATTCCTATCTAACGTATGGTTAA
Found at i:1222299 original size:44 final size:44
Alignment explanation
Indices: 1222247--1223326 Score: 351
Period size: 44 Copynumber: 24.5 Consensus size: 44
1222237 CTATCTAATA
* *
1222247 TATGGTTACCACCCTAGTTAAATTCTTTTCATTCTGATTTGACG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* * ** * *
1222291 TATCGTTACCACCCTAGTCAAA-TCTGCCTC-TCTCTTATCTGACG
1 TATGGTTACCACCCTGGTCAAATTCT-TTTCAT-TCTGATTTGACG
* * * *
1222335 TATGGTTACTACCTTGGTCACATTCTTTTCATTTTGATTTGACG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
*** * ** *
1222379 TATGGTTACCATTTTGGGCAAA-TCTACCTCTTTCATG-TTTGACG
1 TATGGTTACCACCCTGGTCAAATTCT-TTTCATTC-TGATTTGACG
* * *
1222423 TATGGTTATCACCCTGGTTAGATTCTTTTCATTCCTG-TTTGACG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATT-CTGATTTGACG
* * * ** * *
1222467 TATGGTTACCGCCTTTGTCAAATT-TGCCTC-TCTCTTATTTGATG
1 TATGGTTACCACCCTGGTCAAATTCT-TTTCAT-TCTGATTTGACG
* * * * * * **
1222511 TACGGTCATCACCTTGGTCAGATTCTTTTCATT-TCAATTTGAAA
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCT-GATTTGACG
* ** * * * * ** * * * * *
1222555 TATGGCTGTCGCCTTAGTCAAACTCTCCTCTTTCTTATCTAACA
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* * * * *
1222599 TATGGTTACGACACTGGTCAGATTCTTTTTATTCTGATTTGATG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* * * * * *
1222643 TACGGTTACCACCCTGGTCAAATCTACCTCTC-TCCTG-TCTAACCG
1 TATGGTTACCACCCTGGTCAAAT-T-CTTTTCATTCTGATTTGA-CG
* * * * * *
1222688 -ATGGTTACTACCTTTGTAAAATTCTGTTCATTCTGATTTGACA
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* * * * * *
1222731 TATGGTTACCACACTAGTCAGATTCTTTTCATTCCT-TTTTGGCT
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATT-CTGATTTGACG
* * * * * *
1222775 TATGGTTACCACCTTGGGCAAATCCACCTTT--TTCTTG-TCTGATG
1 TATGGTTACCACCCTGGTCAAAT--TCTTTTCATTC-TGATTTGACG
* * * *
1222819 GATGGTTAACACCCTGGTCAGATTCTTTTCATTTTGATTTGACG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* * ** * ** * *
1222863 TATGATTACCACCCTGGTCGAA-TC-TACCACCCTCTTTTTTAATG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCA--TTCTGATTTGACG
* * **
1222907 TATGGTTACCACCTTAGTCAAATTC-AATCATT-TCGATTTGACG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCT-GATTTGACG
* * * **
1222950 TATGGTTACCATCCTGGTCAAA-TCTTCCTATC-TCCTG-TGTGATT
1 TATGGTTACCACCCTGGTCAAATTCTT--T-TCATTCTGATTTGACG
* * * * *
1222994 TATGGTTACTACCTTGGTCAAATTCTTTTCATTTTGACTTGACA
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* * * * * * *
1223038 TATGGTTACCAACTTGGTTAAA-TCTGCTTCTTTCCTG-TCTAACG
1 TATGGTTACCACCCTGGTCAAATTCT-TTTCATT-CTGATTTGACG
* * * **
1223082 TATGGTTGCCACCCTGGTCAGATTCTTTTTATTTCT-ATTTGGTG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCA-TTCTGATTTGACG
* * * * *** * * * *
1223126 TATGGTTATCAACCTGGTGAAATCCACCTCCTTTTTATTTTACG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* * * *
1223170 TATGGTTACCACCCTGGTTAGATTCTTTTCCTTCTAATTTGACG
1 TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
* *** * * ** * * * *
1223214 TATGGTAATTGCCCTAGTCAAATCCACCTCCTTTTTG-TCTGACG
1 TATGGTTACCACCCTGGTCAAATTC-TTTTCATTCTGATTTGACG
* * *
1223258 TATGGTTACCACCCAAGGTCTAATTCTTTTTATTCCT-ATTTTGACG
1 TATGGTTACCACCC-TGGTCAAATTCTTTTCATT-CTGA-TTTGACG
* * *
1223304 CATGCTTACCACCCTAGTCAAAT
1 TATGGTTACCACCCTGGTCAAAT
1223327 CCACCTCCTT
Statistics
Matches: 715, Mismatches: 269, Indels: 103
0.66 0.25 0.09
Matches are distributed among these distances:
42 15 0.02
43 58 0.08
44 556 0.78
45 58 0.08
46 28 0.04
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (44 bp):
TATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACG
Found at i:1222330 original size:88 final size:88
Alignment explanation
Indices: 1222175--1222750 Score: 408
Period size: 88 Copynumber: 6.5 Consensus size: 88
1222165 AGTCTGACAT
** * * * * * ** *
1222175 GTCAGATTCTTTTCATT-TCGATTTGACACATGGTTACGACCTTGGTTAAATTTGTCTCT-TTTC
1 GTCAGATTCTTTTCATTCT-GATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCT-
** *
1222238 TATCTAATATATGGTTACCACCCTA
64 TATCTAACGTATGGTTACCACCCTG
* * * *
1222263 GTTAAATTCTTTTCATTCTGATTTGACGTATCGTTACCACCCTAGTCAAATCTGCCTCTCTCTTA
1 GTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTTA
* * *
1222328 TCTGACGTATGGTTACTACCTTG
66 TCTAACGTATGGTTACCACCCTG
* * *** * * * * *
1222351 GTCACATTCTTTTCATTTTGATTTGACGTATGGTTACCATTTTGGGCAAATCTACCTCTTTCATG
1 GTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTTA
* * *
1222416 TTTGACGTATGGTTATCACCCTG
66 TCTAACGTATGGTTACCACCCTG
* * * * * *
1222439 GTTAGATTCTTTTCATTCCTG-TTTGACGTATGGTTACCGCCTTTGTCAAATTTGCCTCTCTCTT
1 GTCAGATTCTTTTCATT-CTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTT
* * * * * * *
1222503 ATTTGATGTACGGTCATCACCTTG
65 ATCTAACGTATGGTTACCACCCTG
* ** * ** * * *
1222527 GTCAGATTCTTTTCATT-TCAATTTGAAATATGGCTGTCGCCTTAGTCAAACTCT-CCTCTTTCT
1 GTCAGATTCTTTTCATTCT-GATTTGACGTATGGTTACCACCCTAGTCAAA-TCTACCTCTCTCT
* * *
1222590 TATCTAACATATGGTTACGACACTG
64 TATCTAACGTATGGTTACCACCCTG
* * * * * *
1222615 GTCAGATTCTTTTTATTCTGATTTGATGTACGGTTACCACCCTGGTCAAATCTACCTCTCTCCTG
1 GTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTTA
* * *
1222680 TCTAACCG-ATGGTTACTACCTTT
66 TCTAA-CGTATGGTTACCACCCTG
* * * * *
1222703 GTAAAATTCTGTTCATTCTGATTTGACATATGGTTACCACACTAGTCA
1 GTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCA
1222751 GATTCTTTTC
Statistics
Matches: 379, Mismatches: 100, Indels: 18
0.76 0.20 0.04
Matches are distributed among these distances:
86 1 0.00
87 3 0.01
88 366 0.97
89 9 0.02
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (88 bp):
GTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCTTA
TCTAACGTATGGTTACCACCCTG
Found at i:1222489 original size:176 final size:175
Alignment explanation
Indices: 1222175--1222742 Score: 529
Period size: 176 Copynumber: 3.2 Consensus size: 175
1222165 AGTCTGACAT
* * * * * * *
1222175 GTCAGATTCTTTTCATTTCGATTTGACACATGGTTACGACCTT-GGTTAAA-TTTGTCTCTTTTC
1 GTCAAATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTAGG-CAAACTCT-CCTC-TTTC
* * * *
1222238 -TATCTAATATATGGTTACCACCCTAGTTAAATTCTTTTCATTCTGATTTGACGTATCGTTACCA
63 ATATCTAACATATGGTTA-CACCCTGGTTAGATTCTTTTCATTCTGATTTGACGTATGGTTACCA
1222302 CCCTAGTCAAATCTGCCTCTCTCTTATCTGACGTATGGTTACTACCTTG
127 CCCTAGTCAAATCTGCCTCTCTCTTATCTGACGTATGGTTACTACCTTG
* * ** *
1222351 GTCACATTCTTTTCATTTTGATTTGACGTATGGTTACCATTTTGGGCAAA-TCTACCTCTTTCAT
1 GTCAAATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTAGGCAAACTCT-CCTCTTTCAT
* * * * *
1222415 GTTTGACGTATGGTTATCACCCTGGTTAGATTCTTTTCATTCCTG-TTTGACGTATGGTTACCGC
65 ATCTAACATATGGTTA-CACCCTGGTTAGATTCTTTTCATT-CTGATTTGACGTATGGTTACCAC
* * * * * * *
1222479 CTTTGTCAAATTTGCCTCTCTCTTATTTGATGTACGGTCA-TCACCTTG
128 CCTAGTCAAATCTGCCTCTCTCTTATCTGACGTATGGTTACT-ACCTTG
* ** * * ** * * *
1222527 GTCAGATTCTTTTCATTTCAATTTGAAATATGGCTGTCGCCTTAGTCAAACTCTCCTCTTTCTTA
1 GTCAAATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTAGGCAAACTCTCCTCTTTCATA
* * * * *
1222592 TCTAACATATGGTTACGACACTGGTCAGATTCTTTTTATTCTGATTTGATGTACGGTTACCACCC
66 TCTAACATATGGTTAC-ACCCTGGTTAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
* * * * * *
1222657 TGGTCAAATCTACCTCTCTCCTGTCTAACCG-ATGGTTACTACCTTT
130 TAGTCAAATCTGCCTCTCTCTTATCTGA-CGTATGGTTACTACCTTG
* * *
1222703 GTAAAATTCTGTTCATTCTGATTTGACATATGGTTACCAC
1 GTCAAATTCTTTTCATTTTGATTTGACATATGGTTACCAC
1222743 ACTAGTCAGA
Statistics
Matches: 308, Mismatches: 75, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
175 9 0.03
176 289 0.94
177 10 0.03
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.42
Consensus pattern (175 bp):
GTCAAATTCTTTTCATTTTGATTTGACATATGGTTACCACCTTAGGCAAACTCTCCTCTTTCATA
TCTAACATATGGTTACACCCTGGTTAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCT
AGTCAAATCTGCCTCTCTCTTATCTGACGTATGGTTACTACCTTG
Found at i:1222998 original size:87 final size:88
Alignment explanation
Indices: 1222820--1223062 Score: 229
Period size: 87 Copynumber: 2.8 Consensus size: 88
1222810 TGTCTGATGG
* * * * ** * * *
1222820 ATGGTTAACACCCTGGTCAGATTCTTTTCATTTTGATTTGACGTATGATTACCACCCTGGTCGAA
1 ATGGTTACCACCTTAGTCAAATTCTAATCATTTTGATTTGACGTATGGTTACCAACCTGGTCAAA
* * *
1222885 TCTACCACCCTCTTTTTTAATGT
66 TCTACCACCCTCCTGTGTAATGT
* *
1222908 ATGGTTACCACCTTAGTCAAATTC-AATCATTTCGATTTGACGTATGGTTACCATCCTGGTCAAA
1 ATGGTTACCACCTTAGTCAAATTCTAATCATTTTGATTTGACGTATGGTTACCAACCTGGTCAAA
* * * *
1222972 TCTTCCTA-TCTCCTGTGTGATTT
66 TCTACC-ACCCTCCTGTGTAATGT
* * ** * * * *
1222995 ATGGTTACTACCTTGGTCAAATTCTTTTCATTTTGACTTGACATATGGTTACCAACTTGGTTAAA
1 ATGGTTACCACCTTAGTCAAATTCTAATCATTTTGATTTGACGTATGGTTACCAACCTGGTCAAA
1223060 TCT
66 TCT
1223063 GCTTCTTTCC
Statistics
Matches: 126, Mismatches: 27, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
87 70 0.56
88 56 0.44
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (88 bp):
ATGGTTACCACCTTAGTCAAATTCTAATCATTTTGATTTGACGTATGGTTACCAACCTGGTCAAA
TCTACCACCCTCCTGTGTAATGT
Found at i:1223581 original size:88 final size:86
Alignment explanation
Indices: 1223349--1224326 Score: 349
Period size: 88 Copynumber: 11.3 Consensus size: 86
1223339 TGTCTGACAT
* * * *
1223349 GTCACATTCTTTTCATTTCAATTTGATGCATGGTTACCACCCTAGATAAATTTGACTCTCTTCTA
1 GTCACATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAG-TAAATTTGCCTCTC-TCTA
** * **
1223414 TCCAACATATGGTTGCCATATTG
64 TCTGACATATGGTTACCACCTTG
* *
1223437 GTCAAATTCTTTTCA-TTCTGATTTGACGTATGATTACCACCCTAGTTAAATTTGCCTCTCTCCT
1 GTCACATTCTTTTCATTTC-GATTTGACGTATGGTTACCACCCTAG-TAAATTTGCCTCTCT-CT
* * *
1223501 ATCTGACGTAAGGTTACTACCTTG
63 ATCTGACATATGGTTACCACCTTG
* * * *
1223525 GTCACATTCTTTTCATTTCGATTTGACGTATGGTAACCATCTTAGTCAAATCTGCCTCTCTC-AT
1 GTCACATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGT-AAATTTGCCTCTCTCTAT
**
1223589 GCTTGACATATGGTTACCACCAGG
65 -C-TGACATATGGTTACCACCTTG
* * * * * ***
1223613 GTCAGATTCTTTTTATTCCTATTTGACGTATAGTTACCACCCTAGTTAAATCCACCTC-CTTCCT
1 GTCACATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAG-TAAATTTGCCTCTC-T-CT
** * *
1223677 A-CTTGATGTATGGTTACCACCCTA
63 ATC-TGACATATGGTTACCACCTTG
* * * * * * * ***
1223701 GTCAGATT-TTTTCA-TTCTGATTTAAGGTATGTTTACAACCATGGTCAAATCCACCT-TCTTCC
1 GTCACATTCTTTTCATTTC-GATTTGACGTATGGTTACCACCCTAGT-AAATTTGCCTCTC-T-C
* * *
1223763 TATCTAACATATGGTTAACACCCTG
62 TATCTGACATATGGTTACCACCTTG
* * * * * * * ***
1223788 GTCAGATTCTTTTCATTCCTATTTGACGCATGGTTGCGACCCTTGTCAAATCCACCTC-CTTCCT
1 GTCACATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGT-AAATTTGCCTCTC-T-CT
* * *
1223852 ATTTGAC--AT-GTTA-GATTCTT-
63 ATCTGACATATGGTTACCA-CCTTG
* ** ** * * ** * **
1223872 TTCATTTTGATTTGA-TGC-ATGGTT-ACCACCATGGTTA--A----A-T--TTTTTACTCT-TC
1 GTCACATTCTTTTCATTTCGAT--TTGA-C-GTATGGTTACCACCCTAGTAAATTTGCCTCTCTC
* *
1223924 TATCTAACATATGGTTACCACCCTG
62 TATCTGACATATGGTTACCACCTTG
* * * * * *
1223949 GTCAAATTCTTTTCA-TTCTGATTTTACATATGATTACCACTCTAGTCAATTCTGCCTCTCTCCT
1 GTCACATTCTTTTCATTTC-GATTTGACGTATGGTTACCACCCTAGTAAATT-TGCCTCTCT-CT
* * * *
1224013 ATCTGACGTATGGTTGCTAACTTG
63 ATCTGACATATGGTTACCACCTTG
* * * * * * * * * *
1224037 GCCACATTTTTTTCACTTCGATTTGACATATGGTTACCATCTTTGTCAAATCTGCCTCTTTCTTG
1 GTCACATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGT-AAATTTGCCTCTCTC-TA
* * * *
1224102 TCTAACGTATGGTTACTATCTTG
64 TCTGACATATGGTTACCACCTTG
* * * * * * * * *
1224125 GTCACATTCTTTTCATTTTGATTTGACGTATGGTTACCATCTTGGGCAAATCTACCTCTTTCATG
1 GTCACATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCT-AGTAAATTTGCCTCTCTC-TA
* ** *
1224190 TTTGATGTATGGTTACCACCCTG
64 TCTGACATATGGTTACCACCTTG
* * * * * * *
1224213 GTCAAATTCTTTTCATTCCTG-TTTGACGTACGCTTACCGCCTTGGTCAAATCTT-CCTCTCTCT
1 GTCACATTCTTTTCATTTC-GATTTGACGTATGGTTACCACCCTAGT-AAAT-TTGCCTCTCTC-
* * *
1224276 TATTTGACGTATGGTTACCACTTTG
62 TATCTGACATATGGTTACCACCTTG
* *
1224301 GTCAGATTCTTTTCATTTCAATTTGA
1 GTCACATTCTTTTCATTTCGATTTGA
1224327 AATATGATTA
Statistics
Matches: 680, Mismatches: 159, Indels: 102
0.72 0.17 0.11
Matches are distributed among these distances:
73 7 0.01
74 1 0.00
75 6 0.01
76 12 0.02
77 15 0.02
78 3 0.00
79 2 0.00
82 3 0.00
83 5 0.01
84 13 0.02
85 15 0.02
86 12 0.02
87 76 0.11
88 493 0.73
89 16 0.02
90 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (86 bp):
GTCACATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGTAAATTTGCCTCTCTCTATC
TGACATATGGTTACCACCTTG
Found at i:1223978 original size:44 final size:44
Alignment explanation
Indices: 1223866--1225142 Score: 502
Period size: 44 Copynumber: 29.0 Consensus size: 44
1223856 GACATGTTAG
* * * * *
1223866 ATTCTTTTCATTTTGATTTGATGCATGGTTACCACCATGGTTAA
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * * *
1223910 ATT-TTTTACTCTTCT-ATCTAACATATGGTTACCACCCTGGTCAA
1 ATTCTTTT-C-ATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * *
1223954 ATTCTTTTCATTCTGATTTTACATATGATTACCA-CTCTAGTC-A
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCT-TGGTCAA
* * * * * * * *
1223997 ATTCTGCCTCTC-TCCT-ATCTGACGTATGGTTGCTAACTTGGCCAC
1 ATTCT---TTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * *
1224042 ATTTTTTTCACTTC-GATTTGACATATGGTTACCATCTTTGTCAA
1 ATTCTTTTCA-TTCTGATTTGACGTATGGTTACCACCTTGGTCAA
** * * * * * *
1224086 A-TCTGCCTCTTTCTTG-TCTAACGTATGGTTACTATCTTGGTCAC
1 ATTCT-TTTCATTC-TGATTTGACGTATGGTTACCACCTTGGTCAA
* * *
1224130 ATTCTTTTCATTTTGATTTGACGTATGGTTACCATCTTGGGCAA
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
** * * *
1224174 A-TCTACCTCTTTCATG-TTTGATGTATGGTTACCACCCTGGTCAA
1 ATTCT-TTTCATTC-TGATTTGACGTATGGTTACCACCTTGGTCAA
* * *
1224218 ATTCTTTTCATTCCTG-TTTGACGTACGCTTACCGCCTTGGTCAA
1 ATTCTTTTCATT-CTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * *
1224262 A-TCTTCCTC-TCTCTTATTTGACGTATGGTTACCACTTTGGTCAG
1 ATTCTT-TTCAT-TCTGATTTGACGTATGGTTACCACCTTGGTCAA
* ** * *
1224306 ATTCTTTTCATT-TCAATTTGAAATATGATTACTACCTTGGTCAA
1 ATTCTTTTCATTCT-GATTTGACGTATGGTTACCACCTTGGTCAA
* ** * *
1224350 ACTCTCATTT--TTCATG-TTTGACGTATGGTTATGACCCTGGTCAG
1 A-T-TCTTTTCATTC-TGATTTGACGTATGGTTACCACCTTGGTCAA
* * * * *
1224394 ATACTTTTCATTCTAATTTGATGTATGGTTACCACCCTAGTCAA
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* *** * * * * * *
1224438 ATACACCT-ATTTCCTG-TCTAACGTACGGTTACAACCTTAGTAAA
1 ATTCTTTTCA-TT-CTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * * *
1224482 ATTCTTTTCATTTTGATTTGATGTATGGTTACCATAC-TAGTCAG
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCA-CCTTGGTCAA
* * * * *
1224526 ATTCTTTTCATTCTTATTTGACCTATGGTTTCCACCTTGGGCTA
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * * * * * ** * *
1224570 ATCCATCTCTTTCTTATCTAATATATGGTTACCACCTTGGTTAG
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* * *
1224614 ATTCTTTTCATTCTGATTTGACGTATGATTTCCACCCTGGTCAA
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
** * * * *
1224658 A-TC-TACCACCTCCTG-TCTAACATATGGTTACCACCTTGGTCAA
1 ATTCTTTTCA--TTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* * *
1224701 ATTCATTTCATT-TCAGTTTGACGTATGGTTACCATCTTGGTCAA
1 ATTCTTTTCATTCTGA-TTTGACGTATGGTTACCACCTTGGTCAA
** * * *
1224745 A-TC-TGCCAATCTCCTG-TGTGATGTATGGTTACTACCTTGGTCAA
1 ATTCTTTTC-AT-T-CTGATTTGACGTATGGTTACCACCTTGGTCAA
* * ** * *
1224789 ATACTTTTC-TTTTCGATTAAACATATGGTTACCATCTTGGTCAA
1 ATTCTTTTCATTCT-GATTTGACGTATGGTTACCACCTTGGTCAA
* * * * * * *
1224833 A-TCTGCTTCTTTCCT-ATCTGACGTATGGGTACCACCTAGGTTAG
1 ATTCT-TTTCATT-CTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * *
1224877 ATTCTTTTTATTCCT-AATTGACATATGGTTACCACCTTGGTTAA
1 ATTCTTTTCATT-CTGATTTGACGTATGGTTACCACCTTGGTCAA
* * *** * * * *
1224921 GTCCACCTCCTTACT-ATCTGACATATGGTTACCACCTTGGTTAA
1 ATTCTTTTCATT-CTGATTTGACGTATGGTTACCACCTTGGTCAA
* *** * * * * *
1224965 ATCCACCTCCTTACT-ATCTGACATATGGTTACCACCCTGGTCAG
1 ATTCTTTTCATT-CTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * ** *
1225009 ATTCTTTTCCTTCTGATTTGATGTATGGTAACTGCGC-TAGTCAA
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCAC-CTTGGTCAA
* ** * * ** *
1225053 ATCCACCTTCATCCTG-TCTGACGTATGGTTACCACCTAAGTCTA
1 ATTC-TTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
* * * *
1225097 ATTCTTTTCATTCTTATTTGACGCATGGTTACCACCCTAGTCAA
1 ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
1225141 AT
1 AT
1225143 CCACCTCTTT
Statistics
Matches: 900, Mismatches: 269, Indels: 128
0.69 0.21 0.10
Matches are distributed among these distances:
42 14 0.02
43 83 0.09
44 737 0.82
45 53 0.06
46 13 0.01
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (44 bp):
ATTCTTTTCATTCTGATTTGACGTATGGTTACCACCTTGGTCAA
Found at i:1224712 original size:87 final size:88
Alignment explanation
Indices: 1224586--1224790 Score: 252
Period size: 87 Copynumber: 2.3 Consensus size: 88
1224576 CTCTTTCTTA
* * * * *
1224586 TCTAATATATGGTTACCACCTTGGTTAGATTCTTTTCA-TTCTGATTTGACGTATGATTTCCACC
1 TCTAATATATGGTTACCACCTTGGTCAAATTCATTTCATTTCAG-TTTGACGTATGATTACCACC
1224650 CTGGTCAAATCTACC-ACCTCCTG
65 CTGGTCAAATCTACCAACCTCCTG
* * * *
1224673 TCTAACATATGGTTACCACCTTGGTCAAATTCATTTCATTTCAGTTTGACGTATGGTTACCATCT
1 TCTAATATATGGTTACCACCTTGGTCAAATTCATTTCATTTCAGTTTGACGTATGATTACCACCC
* *
1224738 TGGTCAAATCTGCCAATCTCCTG
66 TGGTCAAATCTACCAACCTCCTG
* * * *
1224761 TGTGATGTATGGTTACTACCTTGGTCAAAT
1 TCTAATATATGGTTACCACCTTGGTCAAAT
1224791 ACTTTTCTTT
Statistics
Matches: 100, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
87 64 0.64
88 36 0.36
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (88 bp):
TCTAATATATGGTTACCACCTTGGTCAAATTCATTTCATTTCAGTTTGACGTATGATTACCACCC
TGGTCAAATCTACCAACCTCCTG
Found at i:1225365 original size:88 final size:87
Alignment explanation
Indices: 1225165--1225445 Score: 262
Period size: 88 Copynumber: 3.2 Consensus size: 87
1225155 TGTTTGACAT
* * * * *
1225165 GTCAAATTCTTTTCATTTCGATTTAATGCATGGTTACCACCCT-GATTAAATTTGACTCTCTTCT
1 GTCAAATTCTTTTCATTTTGATTTGACGCATGGTTACCACTCTAG-TTAAATTTGACTCTC-TCA
*
1225229 ATCT-ATCGTATAGTTACCACCTTG
64 ATCTGA-CGTATGGTTACCACCTTG
* * * * * * * * * *
1225253 GTCAAATTCTCTCCACTCTAATTTGGCGTATGATTACCACTCTAGTTAAATCTGGCTCTCTCCAA
1 GTCAAATTCTTTTCATTTTGATTTGACGCATGGTTACCACTCTAGTTAAATTTGACTCTCT-CAA
*
1225318 TCTGACGTATGGTTACTACCTTG
65 TCTGACGTATGGTTACCACCTTG
* * *
1225341 GTCACATTCTTTTCATTTTGATTTGACGCATGGTTACCA-TCTTAGTCAAATTTGCCTCTCTCAT
1 GTCAAATTCTTTTCATTTTGATTTGACGCATGGTTACCACTC-TAGTTAAATTTGACTCTCTCA-
* * *
1225405 GTCTGACGTATGATTACCACCCTG
64 ATCTGACGTATGGTTACCACCTTG
**
1225429 GTCCGATTCTTTTCATT
1 GTCAAATTCTTTTCATT
1225446 CCTATTTGAG
Statistics
Matches: 153, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
87 5 0.03
88 146 0.95
89 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (87 bp):
GTCAAATTCTTTTCATTTTGATTTGACGCATGGTTACCACTCTAGTTAAATTTGACTCTCTCAAT
CTGACGTATGGTTACCACCTTG
Found at i:1225465 original size:88 final size:88
Alignment explanation
Indices: 1225165--1225481 Score: 211
Period size: 88 Copynumber: 3.6 Consensus size: 88
1225155 TGTTTGACAT
* * * * * *
1225165 GTCAAATTCTTTTCATT-TCGATTTAATGCATGGTTACCACCCT-GATTAAATTTGACTCTCTTC
1 GTCACATTCTTTTCATTCT-GATTTGACGCATAGTTACCACCCTAG-TCAAATTTGCCTCTC-TC
* *
1225228 -TATCT-ATCGTAT-AGTTACCACCTTG
63 ATGTCTGA-CGTATGA-TTACCACCCTG
* * * * * * * * * * *
1225253 GTCAAATTCTCTCCACTCTAATTTGGCGTAT-GATTACCACTCTAGTTAAATCTGGCTCTCTCCA
1 GTCACATTCTTTTCATTCTGATTTGACGCATAG-TTACCACCCTAGTCAAATTTGCCTCTCT-CA
* * * *
1225317 -ATCTGACGTATGGTTACTACCTTG
64 TGTCTGACGTATGATTACCACCCTG
* * * *
1225341 GTCACATTCTTTTCATTTTGATTTGACGCATGGTTACCATCTTAGTCAAATTTGCCTCTCTCATG
1 GTCACATTCTTTTCATTCTGATTTGACGCATAGTTACCACCCTAGTCAAATTTGCCTCTCTCATG
1225406 TCTGACGTATGATTACCACCCTG
66 TCTGACGTATGATTACCACCCTG
* ** *
1225429 GTC-CGATTCTTTTCATTCCT-ATTTGAGGTTTAGTTACCACCCTAGTCAGATTT
1 GTCAC-ATTCTTTTCATT-CTGATTTGACGCATAGTTACCACCCTAGTCAAATTT
1225482 TTTCATTCTG
Statistics
Matches: 179, Mismatches: 39, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
87 5 0.03
88 169 0.94
89 5 0.03
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
GTCACATTCTTTTCATTCTGATTTGACGCATAGTTACCACCCTAGTCAAATTTGCCTCTCTCATG
TCTGACGTATGATTACCACCCTG
Found at i:1225767 original size:44 final size:43
Alignment explanation
Indices: 1225693--1226193 Score: 225
Period size: 44 Copynumber: 11.4 Consensus size: 43
1225683 TTTGTCACTC
* * *
1225693 TTCTATCTAACGTATCGTTA-C-CCCTGGTCAAATTCTTTTCA
1 TTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCTTTTCA
* * ***
1225734 TTCTGATTTGACATATGATTACCACCCTGGTCAAA-TCAACCTC-
1 TTCT-ATTTGACGTATGGTTACCACCCTGGTCAAATTC-TTTTCA
* * * * * *
1225777 TCTCTTATCTGACGTTTGGTTACTACCTTGGTCACATTTTTTTCA
1 T-TC-TATTTGACGTATGGTTACCACCCTGGTCAAATTCTTTTCA
* * * * *
1225822 TTTCAATTTGACGTATGGTTACCATCTTTGTCAAA-TCTGACTCTC-
1 -TTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCT---TTTCA
* * *
1225867 TCCTATTTGACGTATGGTTACCACCCTGGTCAGATTATTTTCA
1 TTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCTTTTCA
* * * * *
1225910 TTCCTATTTGACGTATAGTTACCAGCTTGGTCAAATATGCCTCTC-
1 TT-CTATTTGACGTATGGTTACCACCCTGGTCAAAT-T-CTTTTCA
* * * *
1225955 -TCTTATCTAACGTATGGTTAACACCCTGGTCAGATTCTTTTCA
1 TTC-TATTTGACGTATGGTTACCACCCTGGTCAAATTCTTTTCA
* * * *
1225998 TTTCGATTTGACATATGGTTACCACCCTAGTCAAA--CTTTCCTCT
1 -TTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCTTT--TCA
* * * * * *
1226042 TTCCTGTCTGACGTATAGTTACGACCCTAGTCAGATTCTTTTCA
1 TT-CTATTTGACGTATGGTTACCACCCTGGTCAAATTCTTTTCA
* * * ** * *
1226086 TTCCAATTTGATGGATGGTTACCACCCAAGTCAAATCTACCTCTC-
1 TT-CTATTTGACGTATGGTTACCACCCTGGTCAAAT-T-CTTTTCA
** * * * *
1226131 CCCT-TTCTGACGTATGGTTACTACCTTGGTCACATTCATTTCA
1 TTCTATT-TGACGTATGGTTACCACCCTGGTCAAATTCTTTTCA
* *
1226174 TTTCGATTTGACATATGGTT
1 -TTCTATTTGACGTATGGTT
1226194 GCCATCTATG
Statistics
Matches: 332, Mismatches: 96, Indels: 61
0.68 0.20 0.12
Matches are distributed among these distances:
41 4 0.01
42 26 0.08
43 14 0.04
44 261 0.79
45 12 0.04
46 15 0.05
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (43 bp):
TTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCTTTTCA
Found at i:1225831 original size:88 final size:88
Alignment explanation
Indices: 1225639--1226268 Score: 558
Period size: 88 Copynumber: 7.2 Consensus size: 88
1225629 ACATGTCAGC
* * * * ** * * *
1225639 TTCTTCTCATTTCAATTTGATGCATA--GTTACCACCCTAGTTAAATTTGTCACTCTTCTATCTA
1 TTCTTTTCATTTCGATTTGA--CATATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTG
* *
1225702 ACGTATCGTTAC--CCCTGGTCAAA
64 ACGTATGGTTACTACCCTGGTCACA
* * * *
1225725 TTCTTTTCA-TTCTGATTTGACATATGATTACCACCCTGGTCAAATCAACCTCTCTCTTATCTGA
1 TTCTTTTCATTTC-GATTTGACATATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTGA
* *
1225789 CGTTTGGTTACTACCTTGGTCACA
65 CGTATGGTTACTACCCTGGTCACA
* * * * * * *
1225813 TTTTTTTCATTTCAATTTGACGTATGGTTACCATCTTTGTCAAATCTGA-CTCTCTCCTATTTGA
1 TTCTTTTCATTTCGATTTGACATATGGTTACCACCCTAGTCAAATCT-ACCTCTCTCCTATCTGA
* *
1225877 CGTATGGTTACCACCCTGGTCAGA
65 CGTATGGTTACTACCCTGGTCACA
* * * * * * * * * * * *
1225901 TTATTTTCATTCCTATTTGACGTATAGTTACCAGCTTGGTCAAATATGCCTCTCTCTTATCTAAC
1 TTCTTTTCATTTCGATTTGACATATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTGAC
*
1225966 GTATGGTTAAC-ACCCTGGTCAGA
66 GTATGGTT-ACTACCCTGGTCACA
* * *
1225989 TTCTTTTCATTTCGATTTGACATATGGTTACCACCCTAGTCAAA-CTTTCCTCTTTCCTGTCTGA
1 TTCTTTTCATTTCGATTTGACATATGGTTACCACCCTAGTCAAATC-TACCTCTCTCCTATCTGA
* * * *
1226053 CGTATAGTTACGACCCTAGTCAGA
65 CGTATGGTTACTACCCTGGTCACA
* * *** * * *
1226077 TTCTTTTCATTCCAATTTGATGGATGGTTACCACCCAAGTCAAATCTACCTCTCCCCTTTCTGAC
1 TTCTTTTCATTTCGATTTGACATATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTGAC
*
1226142 GTATGGTTACTACCTTGGTCACA
66 GTATGGTTACTACCCTGGTCACA
* * * * * *
1226165 TTCATTTCATTTCGATTTGACATATGGTTGCCA-TCTATGTCAAATCTGCCTCTCCCCTGTCTGA
1 TTCTTTTCATTTCGATTTGACATATGGTTACCACCCTA-GTCAAATCTACCTCTCTCCTATCTGA
* **
1226229 CGTATGATTACTACTTTGGTCACA
65 CGTATGGTTACTACCCTGGTCACA
1226253 TTCTTTTCATTTCGAT
1 TTCTTTTCATTTCGAT
1226269 CCCGATCAAC
Statistics
Matches: 444, Mismatches: 87, Indels: 24
0.80 0.16 0.04
Matches are distributed among these distances:
84 4 0.01
85 3 0.01
86 50 0.11
87 4 0.01
88 376 0.85
89 7 0.02
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (88 bp):
TTCTTTTCATTTCGATTTGACATATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTGAC
GTATGGTTACTACCCTGGTCACA
Found at i:1225892 original size:466 final size:468
Alignment explanation
Indices: 1225048--1225933 Score: 1249
Period size: 466 Copynumber: 1.9 Consensus size: 468
1225038 AACTGCGCTA
* * * * * *
1225048 GTCAAATCCACCTTCATCCTGTCTGACGTATGGTTACCACCTAAGTCTAATTCTTTTCATTCTTA
1 GTCAAATCCAACTTCATCCTATCTAACGTATAGTTAACACCTAAGTCTAATTCTTTTCATTCCTA
* * *
1225113 TTTGACGCATGGTTACCACCCTAGTCAAATCCACCTCTTTCTTGTTTGACATGTCAAATTCTTTT
66 TTTAACGCATGGTTACCACCCTAGTCAAATCCACCTCCTTCTTGTTTGACATGTCAAATTCTTCT
* * * *
1225178 CATTTCGATTTAATGCATGGTTACCACCCTGATTAAATTTGACTCTCTTCTATCTATCGTATAGT
131 CATTTCAATTTAATGCATAGTTACCACCCTGATTAAATTTGACACTCTTCTATCTAACGTATAGT
* * * * ***
1225243 TACCACCTTGGTCAAATTCTCTCCACTCTAATTTGGCGTATGATTACCACTCTAGTTAAATCTGG
196 TACCACCTTGGTCAAATTCTCTCCACTCTAATTTGACATATGATTACCACCCTAGTCAAATCAAC
**
1225308 CTCTCTCCAATCTGACGTATGGTTACTACCTTGGTCACATTCTTTTCATTTTGATTTGACGCATG
261 CTCTCTCCAATCTGACGTATGGTTACTACCTTGGTCACATTCTTTTCATTTCAATTTGACGCATG
* * * * *
1225373 GTTACCATCTTAGTCAAATTTGCCTCTCTCATGTCTGACGTATGATTACCACCCTGGTCCGATTC
326 GTTACCATCTTAGTCAAATCTGACTCTCTCATATCTGACGTATGATTACCACCCTGGTCAGATTA
* *
1225438 TTTTCATTCCTATTTGAGGTTTAGTTACCACCCTAGTCAGATTTTTTCATTCTGATTCAAGGTAC
391 TTTTCATTCCTATTTGACGTATAGTTACCACCCTAGTCAGATTTTTTCATTCTGATTCAAGGTAC
1225503 GTTTACCACCCTG
456 GTTTACCACCCTG
* ** *
1225516 GTCAAATCCAACTTCTTCCTATCTAACGTATAGTTAACACCTTGGTC-AGATTCTTTTTATTCCT
1 GTCAAATCCAACTTCATCCTATCTAACGTATAGTTAACACCTAAGTCTA-ATTCTTTTCATTCCT
* **
1225580 ATTTAACGCATGGTTACCACCCTTGTCAAATCCACCTCCTTCTTGTTTGACATGTCAGCTTCTTC
65 ATTTAACGCATGGTTACCACCCTAGTCAAATCCACCTCCTTCTTGTTTGACATGTCAAATTCTTC
* * *
1225645 TCATTTCAATTTGATGCATAGTTACCACCCT-AGTTAAATTTGTCACTCTTCTATCTAACGTATC
130 TCATTTCAATTTAATGCATAGTTACCACCCTGA-TTAAATTTGACACTCTTCTATCTAACGTATA
* * * * *
1225709 GTTACC-CC-TGGTCAAATTCTTTTCATTCTGATTTGACATATGATTACCACCCTGGTCAAATCA
194 GTTACCACCTTGGTCAAATTCTCTCCACTCTAATTTGACATATGATTACCACCCTAGTCAAATCA
** * * *
1225772 ACCTCTCTCTTATCTGACGTTTGGTTACTACCTTGGTCACATTTTTTTCATTTCAATTTGACGTA
259 ACCTCTCTCCAATCTGACGTATGGTTACTACCTTGGTCACATTCTTTTCATTTCAATTTGACGCA
* * * *
1225837 TGGTTACCATCTTTGTCAAATCTGACTCTCTCCTATTTGACGTATGGTTACCACCCTGGTCAGAT
324 TGGTTACCATCTTAGTCAAATCTGACTCTCTCATATCTGACGTATGATTACCACCCTGGTCAGAT
1225902 TATTTTCATTCCTATTTGACGTATAGTTACCA
389 TATTTTCATTCCTATTTGACGTATAGTTACCA
1225934 GCTTGGTCAA
Statistics
Matches: 363, Mismatches: 53, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
466 187 0.52
467 4 0.01
468 172 0.47
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (468 bp):
GTCAAATCCAACTTCATCCTATCTAACGTATAGTTAACACCTAAGTCTAATTCTTTTCATTCCTA
TTTAACGCATGGTTACCACCCTAGTCAAATCCACCTCCTTCTTGTTTGACATGTCAAATTCTTCT
CATTTCAATTTAATGCATAGTTACCACCCTGATTAAATTTGACACTCTTCTATCTAACGTATAGT
TACCACCTTGGTCAAATTCTCTCCACTCTAATTTGACATATGATTACCACCCTAGTCAAATCAAC
CTCTCTCCAATCTGACGTATGGTTACTACCTTGGTCACATTCTTTTCATTTCAATTTGACGCATG
GTTACCATCTTAGTCAAATCTGACTCTCTCATATCTGACGTATGATTACCACCCTGGTCAGATTA
TTTTCATTCCTATTTGACGTATAGTTACCACCCTAGTCAGATTTTTTCATTCTGATTCAAGGTAC
GTTTACCACCCTG
Found at i:1225943 original size:176 final size:175
Alignment explanation
Indices: 1225702--1226263 Score: 634
Period size: 176 Copynumber: 3.2 Consensus size: 175
1225692 CTTCTATCTA
* * *
1225702 ACGTATCGTTA-C-CCCTGGTCAAATTCTTTTCATT-CTGATTTGACATATGATTACCACCCTGG
1 ACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCT-ATTTGACGTATG-TTACCACCCTGG
* * *
1225764 TCAAATCAACCTCTCTCTTATCTGACGTTTGGTTACTACCTTGGTCACATTTTTTTCATTTCAAT
64 TCAAATCAACCTCTCTCTTATCTGACGTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGAT
* * * *
1225829 TTGACGTATGGTTACCATCTTTGTCAAATCTGACTCTCTCCTATTTG
129 TTGACATATGGTTACCATCTTTGTCAAATCTGCCTCTCTCCTGTCTG
* * *
1225876 ACGTATGGTTACCACCCTGGTCAGATTATTTTCATTCCTATTTGACGTATAGTTACCAGCTTGGT
1 ACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTAT-GTTACCACCCTGGT
* * * *
1225941 CAAAT-ATGCCTCTCTCTTATCTAACGTATGGTTAAC-ACCCTGGTCAGATTCTTTTCATTTCGA
65 CAAATCA-ACCTCTCTCTTATCTGACGTATGGTT-ACTACCTTGGTCACATTCTTTTCATTTCGA
* * * * *
1226004 TTTGACATATGGTTACCACCCTAGTCAAA-CTTTCCTCTTTCCTGTCTG
128 TTTGACATATGGTTACCATCTTTGTCAAATC-TGCCTCTCTCCTGTCTG
* * * * * * **
1226052 ACGTATAGTTACGACCCTAGTCAGATTCTTTTCATTCCAATTTGATGGATGGTTACCACCCAAGT
1 ACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTAT-GTTACCACCCTGGT
* * *
1226117 CAAATCTACCTCTCCCCTT-TCTGACGTATGGTTACTACCTTGGTCACATTCATTTCATTTCGAT
65 CAAATCAACCTCT-CTCTTATCTGACGTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGAT
* * *
1226181 TTGACATATGGTTGCCATCTATGTCAAATCTGCCTCTCCCCTGTCTG
129 TTGACATATGGTTACCATCTTTGTCAAATCTGCCTCTCTCCTGTCTG
* * ** *
1226228 ACGTATGATTACTACTTTGGTCACATTCTTTTCATT
1 ACGTATGGTTACCACCCTGGTCAGATTCTTTTCATT
1226264 TCGATCCCGA
Statistics
Matches: 321, Mismatches: 56, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
174 10 0.03
175 5 0.02
176 296 0.92
177 10 0.03
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (175 bp):
ACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTATGTTACCACCCTGGTC
AAATCAACCTCTCTCTTATCTGACGTATGGTTACTACCTTGGTCACATTCTTTTCATTTCGATTT
GACATATGGTTACCATCTTTGTCAAATCTGCCTCTCTCCTGTCTG
Found at i:1227874 original size:169 final size:168
Alignment explanation
Indices: 1227532--1227980 Score: 523
Period size: 169 Copynumber: 2.7 Consensus size: 168
1227522 TAATTTTTTA
** * * * *
1227532 GTTTTTAAAATTTAAAATTCATCAAATATTATTAATTATT-TCATAATAAATTAGTTTTTAAAAA
1 GTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTCT-ATATTAAATCAGTTTTTAAAAA
* ** * * * * *
1227596 TTAATTCATTTTTGTTTGTTTTTGAATTTTTT-CTTAAAATTC-CCTTGTTTTCAAAATACGGAG
65 TTCATTCATTTTCATTAGTTTTTGAATTTTTTCCTTAAATTTCTCCTTTTTTTCAAAATACGAAC
* *
1227659 TTTTCTACTCCATAAATTTTTTTGAAGGGATTTTTCTTG
130 TTTTCTAATCCATAAATTTTTTCGAAGGGATTTTTCTTG
* * *
1227698 GTTTTTAATTTTTAAAATTCATGAAATTTTATTATTTATTCTATATTAGATCAGTTTTTAAAAAT
1 GTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTCTATATTAAATCAGTTTTTAAAAAT
* * ** *
1227763 TCATTCATTTTCATTACTTTTTGAATTTTTTCCTTGAAATTTCTCTTTTTTTTTTAAATATGAAC
66 TCATTCATTTTCATTAGTTTTTGAATTTTTTCCTT-AAATTTCTCCTTTTTTTCAAAATACGAAC
* *
1227828 TTTTCTAATCCGTAAATTTTTTCGGAGGGATTTTTCTTG
130 TTTTCTAATCCATAAATTTTTTCGAAGGGATTTTTCTTG
* * * * *
1227867 GTTTTTAATTTTTAAAA-TCTATAAAATATTATTATTTATTCCAAATTAAATCAATTTTCAAAAG
1 GTTTTTAATTTTTAAAATTC-ATAAAATATTATTATTTATTCTATATTAAATCAGTTTTTAAAAA
* *
1227931 TTCGTTCATTTTCATGAGTTTTT-AATTTTTTCCTTAAAATTT-TCCTTTTT
65 TTCATTCATTTTCATTAGTTTTTGAATTTTTTCCTT-AAATTTCTCCTTTTT
1227981 CAAAACATCA
Statistics
Matches: 240, Mismatches: 38, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
166 81 0.34
167 11 0.05
168 26 0.11
169 122 0.51
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (168 bp):
GTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTCTATATTAAATCAGTTTTTAAAAAT
TCATTCATTTTCATTAGTTTTTGAATTTTTTCCTTAAATTTCTCCTTTTTTTCAAAATACGAACT
TTTCTAATCCATAAATTTTTTCGAAGGGATTTTTCTTG
Found at i:1228815 original size:35 final size:35
Alignment explanation
Indices: 1228745--1228995 Score: 230
Period size: 35 Copynumber: 7.4 Consensus size: 35
1228735 TATTTTGAAG
* *
1228745 GCTAAGATAGAACCTC-CT---TATCTTTCCACAG
1 GCTAAGATAGAACCTCTCTCCCTATCTTTTCACAA
1228776 GCTAAGATAGAACCTCTCTCCCTATCTTTTCACAA
1 GCTAAGATAGAACCTCTCTCCCTATCTTTTCACAA
*
1228811 GCTAAGATACAA---C-CTCCCTATCTTTTTCA-AA
1 GCTAAGATAGAACCTCTCTCCCTATC-TTTTCACAA
* * *
1228842 GGCTAGGATAGAA---C-CTCCCTATTTTTTCACAG
1 -GCTAAGATAGAACCTCTCTCCCTATCTTTTCACAA
*
1228874 GCTAAGATAGAACCTTTCTCCCTATCTTTTTCA-AA
1 GCTAAGATAGAACCTCTCTCCCTATC-TTTTCACAA
*
1228909 GGCTAAGATAGGAACCTCT-TCACTATCTTTTCACAA
1 -GCTAAGATA-GAACCTCTCTCCCTATCTTTTCACAA
1228945 G-TCAAGATAGAACCTCTCTCCCTATCTTTTTCA-AA
1 GCT-AAGATAGAACCTCTCTCCCTATC-TTTTCACAA
*
1228980 GGCTAAGATAAAACCT
1 -GCTAAGATAGAACCT
1228996 TACATTCACT
Statistics
Matches: 185, Mismatches: 15, Indels: 35
0.79 0.06 0.15
Matches are distributed among these distances:
31 44 0.24
32 29 0.16
34 9 0.05
35 53 0.29
36 42 0.23
37 8 0.04
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (35 bp):
GCTAAGATAGAACCTCTCTCCCTATCTTTTCACAA
Found at i:1228968 original size:71 final size:69
Alignment explanation
Indices: 1228745--1228995 Score: 301
Period size: 71 Copynumber: 3.7 Consensus size: 69
1228735 TATTTTGAAG
* *
1228745 GCTAAGATAGAACCTC-CT---TATC-TTTCCACAGGCTAAGATAGAACCTCTCTCCCTATCTTT
1 GCTAAGATAGAACCTCTCTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCT-T-CCTATCTTT
1228805 TCACAA
64 TCACAA
* * *
1228811 GCTAAGATACAA---C-CTCCCTATCTTTTTCAAAGGCTAGGATAGAACCTC--CCTATTTTTTC
1 GCTAAGATAGAACCTCTCTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCTTCCTATCTTTTC
*
1228870 ACAG
66 ACAA
*
1228874 GCTAAGATAGAACCTTTCTCCCTATCTTTTTCAAAGGCTAAGATAGGAACCTCTTCACTATCTTT
1 GCTAAGATAGAACCTCTCTCCCTATCTTTTTCAAAGGCTAAGATA-GAACCTCTTC-CTATCTTT
1228939 TCACAA
64 TCACAA
*
1228945 G-TCAAGATAGAACCTCTCTCCCTATCTTTTTCAAAGGCTAAGATAAAACCT
1 GCT-AAGATAGAACCTCTCTCCCTATCTTTTTCAAAGGCTAAGATAGAACCT
1228996 TACATTCACT
Statistics
Matches: 159, Mismatches: 13, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
63 27 0.17
66 15 0.09
67 49 0.31
68 7 0.04
70 7 0.04
71 54 0.34
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (69 bp):
GCTAAGATAGAACCTCTCTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCTTCCTATCTTTTC
ACAA
Found at i:1229557 original size:13 final size:13
Alignment explanation
Indices: 1229539--1229563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1229529 TACAAAGAAC
1229539 ATGTATCGATACA
1 ATGTATCGATACA
1229552 ATGTATCGATAC
1 ATGTATCGATAC
1229564 TAAGCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1229562 original size:32 final size:33
Alignment explanation
Indices: 1229521--1229582 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
1229511 CATTTTATGG
*
1229521 TGTATCGATACAAAG-AACATGTATCGATACAA
1 TGTATCGATACAAAGCAACACGTATCGATACAA
* *
1229553 TGTATCGATACTAAGCAATACGTATCGATA
1 TGTATCGATACAAAGCAACACGTATCGATA
1229583 TATCTGGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (33 bp):
TGTATCGATACAAAGCAACACGTATCGATACAA
Found at i:1229667 original size:21 final size:21
Alignment explanation
Indices: 1229643--1229689 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1229633 GTTAACCTTT
*
1229643 ATGTAACGACACAAATAGTAG
1 ATGTAACGACACAAATAGTAC
* * *
1229664 ATGTATCGATACTAATAGTAC
1 ATGTAACGACACAAATAGTAC
1229685 ATGTA
1 ATGTA
1229690 TCGATACTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.28
Consensus pattern (21 bp):
ATGTAACGACACAAATAGTAC
Found at i:1229690 original size:21 final size:21
Alignment explanation
Indices: 1229656--1229697 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1229646 TAACGACACA
*
1229656 AATAGTAGATGTATCGATACT
1 AATAGTACATGTATCGATACT
1229677 AATAGTACATGTATCGATACT
1 AATAGTACATGTATCGATACT
1229698 TTAAATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (21 bp):
AATAGTACATGTATCGATACT
Found at i:1234951 original size:36 final size:35
Alignment explanation
Indices: 1234866--1235097 Score: 270
Period size: 36 Copynumber: 6.9 Consensus size: 35
1234856 ACTTATAACA
1234866 CTATCTTTT-AAAGGCTAAGATAGAA---C-C-CC
1 CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCC
*
1234895 CTATCTTTTCATAGGCTAAGATAGAACCTCTCTCC
1 CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCC
* * *
1234930 CTATCTTTTTCAGAGGTTAAGATACAA---C-CTCC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTCTCC
*
1234962 CTATCTTTTCACAGGCTAAGATAGAACCTCTCTCC
1 CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCC
* *
1234997 CTATCTTTTTCAAAGGCTAAAATAGAACCTCT-TCA
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTCTCC
* *
1235032 TTATCTTTTCATAGGCTAAGATAGAACCTCTCTCC
1 CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCC
*
1235067 CTATCTTTTTCAAAGGCTAAGATATAACCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTC
1235098 ACAATCACTT
Statistics
Matches: 172, Mismatches: 17, Indels: 21
0.82 0.08 0.10
Matches are distributed among these distances:
29 9 0.05
30 15 0.09
31 18 0.10
32 9 0.05
33 2 0.01
34 26 0.15
35 28 0.16
36 65 0.38
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCC
Found at i:1235074 original size:70 final size:67
Alignment explanation
Indices: 1234866--1235097 Score: 353
Period size: 67 Copynumber: 3.5 Consensus size: 67
1234856 ACTTATAACA
1234866 CTATC-TTTT-AAAGGCTAAGATAGAACC-CCCTATCTTTTCATAGGCTAAGATAGAACCTCTCT
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTCCCTATCTTTTCATAGGCTAAGATAGAACCTCTCT
1234928 CC
66 CC
* * * *
1234930 CTATCTTTTTCAGAGGTTAAGATACAACCTCCCTATCTTTTCACAGGCTAAGATAGAACCTCTCT
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTCCCTATCTTTTCATAGGCTAAGATAGAACCTCTCT
1234995 CC
66 CC
* *
1234997 CTATCTTTTTCAAAGGCTAAAATAGAACCTCTTCATTATCTTTTCATAGGCTAAGATAGAACCTC
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTC--C-CTATCTTTTCATAGGCTAAGATAGAACCTC
1235062 TCTCC
63 TCTCC
*
1235067 CTATCTTTTTCAAAGGCTAAGATATAACCTC
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTC
1235098 ACAATCACTT
Statistics
Matches: 150, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
64 5 0.03
65 4 0.03
66 15 0.10
67 63 0.42
69 1 0.01
70 62 0.41
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (67 bp):
CTATCTTTTTCAAAGGCTAAGATAGAACCTCCCTATCTTTTCATAGGCTAAGATAGAACCTCTCT
CC
Found at i:1235604 original size:51 final size:51
Alignment explanation
Indices: 1235508--1235604 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
1235498 AATTCTAGCC
** * * *
1235508 GTTGGACTCAATGTATCGATACAGTTTATAATGTATGGATGCAATTATAGT
1 GTTGGACTCAATGTATCGATACAACTTACAATGTATCGATACAATTATAGT
*
1235559 GTTGGGCTCAATGTATCGATACAACTTACCAA-GTATCGATACAATT
1 GTTGGACTCAATGTATCGATACAACTTA-CAATGTATCGATACAATT
1235605 TAATTATGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
51 37 0.95
52 2 0.05
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (51 bp):
GTTGGACTCAATGTATCGATACAACTTACAATGTATCGATACAATTATAGT
Found at i:1236087 original size:19 final size:18
Alignment explanation
Indices: 1236056--1236098 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
1236046 CAGCTGAAAG
*
1236056 AAGAGAAAGAAGAAAAACA
1 AAGA-AAAGAAGAAAAAAA
1236075 AAGAAAAGAAAGAAAAAAA
1 AAGAAAAG-AAGAAAAAAA
1236094 AAGAA
1 AAGAA
1236099 GAAAATAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (18 bp):
AAGAAAAGAAGAAAAAAA
Found at i:1236101 original size:22 final size:22
Alignment explanation
Indices: 1236052--1236103 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
1236042 GGTTCAGCTG
* *
1236052 AAAGAAGAGAAAGAAGAAAAAC
1 AAAGAAAAGAAAGAAGAAAAAA
1236074 AAAGAAAAGAAAGAA-AAAAAA
1 AAAGAAAAGAAAGAAGAAAAAA
1236095 AGAAGAAAA
1 A-AAGAAAA
1236104 TAGAGTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 6 0.22
22 21 0.78
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (22 bp):
AAAGAAAAGAAAGAAGAAAAAA
Found at i:1238024 original size:157 final size:156
Alignment explanation
Indices: 1237708--1238177 Score: 492
Period size: 156 Copynumber: 3.0 Consensus size: 156
1237698 TTATTTATTA
* * * * *
1237708 TTTTAAGTCCTTTAGGGGT-ATCGGGTACTTTTACATCGAAAATATCCCTTAGGAGCATTTTAGT
1 TTTTAAGTCTTTTAGGGGTAATCGGGTAC-TTTACGTCGAAGATATCCCCTAGGAGCATTTTCGT
* ** * * *
1237772 AAATTTTTTAGAACTGAGTCATAGGTAATCA-TTGAGTCC-ATTTCTAT-CTCGAAGGTGTA-TG
65 -AATTTTTTAGAACTGAGTCATAAGTTGTCACTAG-GTCCGCTTTC-ATGCT-GAAGGTG-AGTA
* * ** * *
1237833 TTTAGGATAGGTTCGTCCCAGTTAAAATCTTT
125 TTTAGGATAGGTTCATCTCTTTTTAAATCCTT
*
1237865 TTTTAAGTCTTTTAGGGGTAAT-GGGTACTTCTACGTCGAAGATACCCCCTAGGAGCATTTTCGT
1 TTTTAAGTCTTTTAGGGGTAATCGGGTACTT-TACGTCGAAGATATCCCCTAGGAGCATTTTCGT
* * *
1237929 AATTTCTTAGAACTGAGTCTTAAGTTGTCACCAGGTCCGCTTTCATGCTGAAGGTGAGTATTTAG
65 AATTTTTTAGAACTGAGTCATAAGTTGTCACTAGGTCCGCTTTCATGCTGAAGGTGAGTATTTAG
1237994 GATAGGTTCATCTCTTTTTATAATCC-T
130 GATAGGTTCATCTCTTTTTA-AATCCTT
* * * *
1238021 TTTTAAGTCTTTTAGGGG-AATCGAGTACCTTTATGTCGAAGGTATCCCCTA-AAGGCATTTTCG
1 TTTTAAGTCTTTTAGGGGTAATCGGGTA-CTTTACGTCGAAGATATCCCCTAGGA-GCATTTTCG
* * * * *
1238084 TAATTTTTTAGAATTGAGTCCTAAGTTGTCACTAAGTCTGCTTTTATGCTGAAGGT-AGATATTT
64 TAATTTTTTAGAACTGAGTCATAAGTTGTCACTAGGTCCGCTTTCATGCTGAAGGTGAG-TATTT
*
1238148 ATGATAGGTTCATCTCTTTTTAAATCCTT
128 AGGATAGGTTCATCTCTTTTTAAATCCTT
1238177 T
1 T
1238178 AGGGGTATCA
Statistics
Matches: 267, Mismatches: 34, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
155 12 0.04
156 187 0.70
157 66 0.25
158 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.40
Consensus pattern (156 bp):
TTTTAAGTCTTTTAGGGGTAATCGGGTACTTTACGTCGAAGATATCCCCTAGGAGCATTTTCGTA
ATTTTTTAGAACTGAGTCATAAGTTGTCACTAGGTCCGCTTTCATGCTGAAGGTGAGTATTTAGG
ATAGGTTCATCTCTTTTTAAATCCTT
Found at i:1244265 original size:48 final size:49
Alignment explanation
Indices: 1244213--1244397 Score: 236
Period size: 48 Copynumber: 3.9 Consensus size: 49
1244203 TCAATACCTG
*
1244213 GTCAAACAT-TTTTCTTTCCCT-ATTTGACTATATTGGTGTTAGGGCCTA
1 GTCAAAC-TCTTTTCTTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTA
*
1244261 GTCAAACTCTTTTCTTT-CCTCGTTTGACTGTATTGGTGTTAGGGCCTA
1 GTCAAACTCTTTTCTTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTA
* * * *
1244309 GTCAAATTCTTTTC-ATCCCTCGTTTGACTATATTGGTGATAGGGCTTA
1 GTCAAACTCTTTTCTTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTA
** * *
1244357 GTCAAACTCTTTTC-AACCCTCGTTTGATTGTATTGGTGTTA
1 GTCAAACTCTTTTCTTTCCCTCGTTTGACTATATTGGTGTTA
1244398 AAACCTAGCC
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
47 5 0.04
48 117 0.96
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.43
Consensus pattern (49 bp):
GTCAAACTCTTTTCTTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTA
Found at i:1244411 original size:48 final size:48
Alignment explanation
Indices: 1244235--1244397 Score: 245
Period size: 48 Copynumber: 3.4 Consensus size: 48
1244225 TCTTTCCCTA
* * *
1244235 TTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCTTTTCTTTCCTCG
1 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTCG
*
1244283 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAATTCTTTTCATCCCTCG
1 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTCG
* * * *
1244331 TTTGACTATATTGGTGATAGGGCTTAGTCAAACTCTTTTCAACCCTCG
1 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTCG
*
1244379 TTTGATTGTATTGGTGTTA
1 TTTGACTGTATTGGTGTTA
1244398 AAACCTAGCC
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 103 1.00
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (48 bp):
TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTCG
Found at i:1244590 original size:88 final size:88
Alignment explanation
Indices: 1244437--1244599 Score: 197
Period size: 88 Copynumber: 1.9 Consensus size: 88
1244427 TGATGCATGG
* ** * *
1244437 TTACCACCCTAATCAAATTCTTTTCATTTCAATTTGATGTATGGTTACCACCTTGGTCAAGTCTG
1 TTACCACCATAATCAAATTCTTTTCATTTCAATTTGACATATGGTTACCACCTTAGTCAAATCTG
1244502 -CATCTTTCTTGTCTAATGTATGA
66 CCA-CTTTCTTGTCTAATGTATGA
* ** *
1244525 TTACCACCATAGTCAAATTCTTTTCA-TTCTTGTTTGACATATGGTTACCA-TTCTAGTCAAATC
1 TTACCACCATAATCAAATTCTTTTCATTTC-AATTTGACATATGGTTACCACCT-TAGTCAAATC
1244588 TGCCACTTTCTT
64 TGCCACTTTCTT
1244600 ATCTGACATA
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
87 4 0.06
88 57 0.90
89 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.42
Consensus pattern (88 bp):
TTACCACCATAATCAAATTCTTTTCATTTCAATTTGACATATGGTTACCACCTTAGTCAAATCTG
CCACTTTCTTGTCTAATGTATGA
Found at i:1244951 original size:88 final size:87
Alignment explanation
Indices: 1244834--1245575 Score: 349
Period size: 88 Copynumber: 8.5 Consensus size: 87
1244824 TATGATTATG
*** * * * *
1244834 ACCCTAGTCAAATCCACCTCTTTCCTGTCTAACGTATAGTTACCACCCTAGTCAAATCCTTTGCC
1 ACCCTAGTCAAATCCTTTTCATTCTTGTCTGACGTATGGTTACCACCCTAGTCAAAT-CTTTGCC
*
1244899 TTCTTGTCTGATGTATGGTTACC
65 TTCTTGTCTGACGTATGGTTACC
* * * * *
1244922 ACCCTAGTCAAATCCTTTTCCTTCTTGTCTGATGTATGGTTACCACCCTAGTCAGATTCTTTTCA
1 ACCCTAGTCAAATCCTTTTCATTCTTGTCTGACGTATGGTTACCACCCTAGTCA-AATCTTTGCC
* * ** *
1244987 TTCTTATTTGATTTAAGGTTACC
65 TTCTTGTCTGACGTATGGTTACC
* ** * * * * * ** * *
1245010 ACCCTGGTCAAAT-CTACCTCCTTCTTGTCGGACATAAGGTTACCACCCTAATCAGTTCTTTTCA
1 ACCCTAGTCAAATCCT-TTTCATTCTTGTCTGACGTATGGTTACCACCCTAGTCAAATCTTTGCC
1245074 TT-TTGAAT-TGACGTATGGTTACC
65 TTCTTG--TCTGACGTATGGTTACC
* * * * * ** *
1245097 ACCCTAATC-AGTTCTTTTCGTT-TTGAAT-TGACGTATGGTTACCACCCTAATCAGTTCTTTTC
1 ACCCTAGTCAAATCCTTTTCATTCTTG--TCTGACGTATGGTTACCACCCTAGTCAAATCTTTGC
*
1245159 ATT-TTGAAT-TGACGTATGGTTACC
64 CTTCTTG--TCTGACGTATGGTTACC
** * * * * * *
1245183 ACCCTAGTCAAA-CCTGCCTCCTTCTTGTCT-ACATATGGTTATCGCCATGGTCAAA--TTTGCC
1 ACCCTAGTCAAATCCT-TTTCATTCTTGTCTGACGTATGGTTACCACCCTAGTCAAATCTTTG--
* *
1245244 TCCTTCTTGTCTGACGTATGTTTTCC
63 -CCTTCTTGTCTGACGTATGGTTACC
* * * * ** * * * * ** *
1245270 ACCAT-GTTAGATTCTTTTCATTCTAATTTAACGTGTGATTATGACCCTAGTCAAATCTACCT-C
1 ACCCTAGTCAAATCCTTTTCATTCTTGTCTGACGTATGGTTACCACCCTAGTCAAATCT--TTGC
* * * *
1245333 CTTCTTGTTTGATGTACGGTTGCC
64 CTTCTTGTCTGACGTATGGTTACC
* * * * *
1245357 ACACTAGTCAGATTCTTTTCATT-TCGATTTGACGTATGGTTACCACCCTAGTCAAATC--TGCC
1 ACCCTAGTCAAATCCTTTTCATTCTTG-TCTGACGTATGGTTACCACCCTAGTCAAATCTTTG-C
*
1245419 TCTCTCTTGTCTGATGTATGGTTACC
64 -CT-TCTTGTCTGACGTATGGTTACC
* * * * * *
1245445 ACCCTAGTTAGATTCTTTTCATT-TTGATTTGACTTATGGTTACCATCCTAGTCAAACTCTTAT-
1 ACCCTAGTCAAATCCTTTTCATTCTTG-TCTGACGTATGGTTACCACCCTAGTCAAA-TCTT-TG
** * *
1245508 TTTTCTTGTCTGACATTTGGTTACC
63 CCTTCTTGTCTGACGTATGGTTACC
* *
1245533 ACCCTGGTCAAATCTGCCTTTT--TTC-TGTCTAACGTATGGTTAC
1 ACCCTAGTCAAA--T-CCTTTTCATTCTTGTCTGACGTATGGTTAC
1245576 TACCTTGGTC
Statistics
Matches: 510, Mismatches: 108, Indels: 72
0.74 0.16 0.10
Matches are distributed among these distances:
84 4 0.01
85 3 0.01
86 105 0.21
87 107 0.21
88 273 0.54
89 10 0.02
90 1 0.00
91 6 0.01
92 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (87 bp):
ACCCTAGTCAAATCCTTTTCATTCTTGTCTGACGTATGGTTACCACCCTAGTCAAATCTTTGCCT
TCTTGTCTGACGTATGGTTACC
Found at i:1245108 original size:43 final size:43
Alignment explanation
Indices: 1245047--1245188 Score: 275
Period size: 43 Copynumber: 3.3 Consensus size: 43
1245037 TCGGACATAA
1245047 GGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTAT
1 GGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTAT
*
1245090 GGTTACCACCCTAATCAGTTCTTTTCGTTTTGAATTGACGTAT
1 GGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTAT
1245133 GGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTAT
1 GGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTAT
1245176 GGTTACCACCCTA
1 GGTTACCACCCTA
1245189 GTCAAACCTG
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (43 bp):
GGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTAT
Found at i:1245220 original size:43 final size:43
Alignment explanation
Indices: 1245173--1245274 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
1245163 TGAATTGACG
*
1245173 TATGGTTACCACCCTAGTCAAACCTGCCTCCTTCTTGTCTACA
1 TATGGTTACCACCATAGTCAAACCTGCCTCCTTCTTGTCTACA
* * * ** *
1245216 TATGGTTATCGCCATGGTCAAATTTGCCTCCTTCTTGTCTGACG
1 TATGGTTACCACCATAGTCAAACCTGCCTCCTTCTTGTCT-ACA
* *
1245260 TATGTTTTCCACCAT
1 TATGGTTACCACCAT
1245275 GTTAGATTCT
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
43 34 0.72
44 13 0.28
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.37
Consensus pattern (43 bp):
TATGGTTACCACCATAGTCAAACCTGCCTCCTTCTTGTCTACA
Found at i:1245220 original size:86 final size:86
Alignment explanation
Indices: 1244911--1245223 Score: 346
Period size: 86 Copynumber: 3.6 Consensus size: 86
1244901 CTTGTCTGAT
** ** *
1244911 GTATGGTTACCACCCTAGTCAAATCCTTTTCCTTCTTGTCTGATGTATGGTTACCACCCTAGTCA
1 GTATGGTTACCACCCTAGTCAAA-CCTCCTCCTTCTTGTCTGACATATGGTTACCACCCTAATCA
* *
1244976 GATTCTTTTCATTCTT-ATTTGAT
65 G-TTCTTTTCATT-TTGAATTGAC
* * * * * *
1244999 TTAAGGTTACCACCCTGGTCAAATCTACCTCCTTCTTGTCGGACATAAGGTTACCACCCTAATCA
1 GTATGGTTACCACCCTAGTCAAACCT-CCTCCTTCTTGTCTGACATATGGTTACCACCCTAATCA
1245064 GTTCTTTTCATTTTGAATTGAC
65 GTTCTTTTCATTTTGAATTGAC
* *** ** * *
1245086 GTATGGTTACCACCCTAATCAGTTCTTTTCGTT-TTGAAT-TGACGTATGGTTACCACCCTAATC
1 GTATGGTTACCACCCTAGTCAAACCTCCTCCTTCTTG--TCTGACATATGGTTACCACCCTAATC
1245149 AGTTCTTTTCATTTTGAATTGAC
64 AGTTCTTTTCATTTTGAATTGAC
1245172 GTATGGTTACCACCCTAGTCAAACCTGCCTCCTTCTTGTCT-ACATATGGTTA
1 GTATGGTTACCACCCTAGTCAAACCT-CCTCCTTCTTGTCTGACATATGGTTA
1245224 TCGCCATGGT
Statistics
Matches: 185, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
85 3 0.02
86 83 0.45
87 44 0.24
88 55 0.30
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (86 bp):
GTATGGTTACCACCCTAGTCAAACCTCCTCCTTCTTGTCTGACATATGGTTACCACCCTAATCAG
TTCTTTTCATTTTGAATTGAC
Found at i:1245516 original size:479 final size:477
Alignment explanation
Indices: 1244649--1245537 Score: 1108
Period size: 479 Copynumber: 1.9 Consensus size: 477
1244639 TTCTTGTCTA
** * * *
1244649 ACGTACGGTTACCACCCTGGTTGTTCATTTCATTTTGATTTGACCTATGGTTACCACCCTGGTCA
1 ACGTACGGTTACCACCCTAATAGTTCATTTCATTTTGAATTGACCTATGGTTACCACCCTAGTCA
* * *
1244714 AATCTCCTTTCATCTTGCCGACACATGGTTACCACTATGGTCAAATTGGCCTCCTACCTCTCTAA
66 AACCTCCTTCCATCTTGCCGACACATGGTTACCACCATGGTCAAATTGGCCTCCTACCTCTCTAA
* * *
1244779 CGTATGGTTACCACTTGGTTAGATTCTTTTCATTATGATTTAATATATGATTATGACCCTAGTCA
131 CGTATGGTTACCACATGGTTAGATTCTTTTCATTATAATTTAACATATGATTATGACCCTAGTCA
* * * * *
1244844 AATCCACCTCTTTCCTGTCTAACGTATAGTTACCACCCTAGTCAAATCCTTTGCCTTCTTGTCTG
196 AATCCACCTCCTTCCTGTCTAACGTACAGTTACCACACTAGTCAAATCCTTTGCATTCTCGTCTG
* * *
1244909 ATGTATGGTTACCACCCTAGTCAAATCCTTTTCCTTCTTGTCTGATGTATGGTTACCACCCTAGT
261 ACGTATGGTTACCACCCTAGTCAAATCCCTCTCCTTCTTGTCTGATGTATGGTTACCACCCTAGT
* *
1244974 CAGATTCTTTTCATTCTTATTTGATTTAAGGTTACCACCCTGGTCAAATCTACCTCCTTCTTGTC
326 CAGATTCTTTTCATTCTTATTTGACTTAAGGTTACCACCCTAGTCAAATCTA-CTCCTTCTTGTC
1245039 GGACATAAGGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTATGGTTACCACCCTAA
390 GGACATAAGGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTATGGTTACCACCCTAA
1245104 TCAGTTCTTTTCGTTTTGAATTG
455 TCAGTTCTTTTCGTTTTGAATTG
* * *
1245127 ACGTATGGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTATGGTTACCACCCTAGTC
1 ACGTACGGTTACCACCCTAAT-AGTTCATTTCATTTTGAATTGACCTATGGTTACCACCCTAGTC
* * * * * * * * * *
1245192 AAACCTGCC-TCCTTCTTGTCTACATATGGTTATCGCCATGGTCAAATTTGCCTCCTTCTTGTCT
65 AAACCT-CCTTCCATCTTGCCGACACATGGTTACCACCATGGTCAAATTGGCCTCCTACCTCTCT
* * * * * *
1245256 GACGTATGTTTTCCACCAT-GTTAGATTCTTTTCATTCTAATTTAACGTGTGATTATGACCCTAG
129 AACGTATGGTTACCA-CATGGTTAGATTCTTTTCATTATAATTTAACATATGATTATGACCCTAG
* * * * * * * * * *
1245320 TCAAATCTACCTCCTTCTTGTTTGATGTACGGTTGCCACACTAGTCAGATTCTTTTCATT-TCGA
193 TCAAATCCACCTCCTTCCTGTCTAACGTACAGTTACCACACTAGTCAAATCCTTTGCATTCTCG-
*
1245384 TTTGACGTATGGTTACCACCCTAGTCAAATCTGCCTCT-C-TCTTGTCTGATGTATGGTTACCAC
257 TCTGACGTATGGTTACCACCCTAGTCAAATC--CCTCTCCTTCTTGTCTGATGTATGGTTACCAC
* * * **
1245447 CCTAGTTAGATTCTTTTCATT-TTGATTTGACTTATGGTTACCATCCTAGTCAAACTCTTA-TTT
320 CCTAGTCAGATTCTTTTCATTCTT-ATTTGACTTAAGGTTACCACCCTAGTCAAA-TC-TACTCC
* **
1245510 TTCTTGTCTGACATTTGGTTACCACCCT
382 TTCTTGTCGGACATAAGGTTACCACCCT
1245538 GGTCAAATCT
Statistics
Matches: 343, Mismatches: 59, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
478 22 0.06
479 309 0.90
480 7 0.02
481 5 0.01
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (477 bp):
ACGTACGGTTACCACCCTAATAGTTCATTTCATTTTGAATTGACCTATGGTTACCACCCTAGTCA
AACCTCCTTCCATCTTGCCGACACATGGTTACCACCATGGTCAAATTGGCCTCCTACCTCTCTAA
CGTATGGTTACCACATGGTTAGATTCTTTTCATTATAATTTAACATATGATTATGACCCTAGTCA
AATCCACCTCCTTCCTGTCTAACGTACAGTTACCACACTAGTCAAATCCTTTGCATTCTCGTCTG
ACGTATGGTTACCACCCTAGTCAAATCCCTCTCCTTCTTGTCTGATGTATGGTTACCACCCTAGT
CAGATTCTTTTCATTCTTATTTGACTTAAGGTTACCACCCTAGTCAAATCTACTCCTTCTTGTCG
GACATAAGGTTACCACCCTAATCAGTTCTTTTCATTTTGAATTGACGTATGGTTACCACCCTAAT
CAGTTCTTTTCGTTTTGAATTG
Found at i:1245555 original size:44 final size:43
Alignment explanation
Indices: 1244475--1245575 Score: 276
Period size: 44 Copynumber: 25.2 Consensus size: 43
1244465 TCAATTTGAT
* * * * * * *
1244475 GTATGGTTACCACCTTGGTCAAGTCTGCATCTTTCTTGTCTAAT
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * * *
1244519 GTATGATTACCACCATAGTCAAAT-TCTTTTCATTCTTGTTTGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTT--TTCTTGTCTGAC
* ** ** *
1244563 ATATGGTTACCATTCTAGTCAAATCTGCCACTTTCTTATCTGAC
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * * * * *
1244607 ATATGGTTAGCACCCTGGTCAAATTTGCCTCTTTCTTGTCTAAC
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * ** * *
1244651 GTACGGTTACCACCCTGGT--TGT-TCATTTCATT-TTGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTT--TTCTTG-TCTGAC
* * * *
1244693 CTATGGTTACCACCCTGGTCAAATCTCCTTTCATCTTG-CCGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTT-TTCTTGTCTGAC
** ** * ** * * * *
1244736 ACATGGTTACCACTATGGTCAAAT-TGGCCTCCTACCTCTCTAAC
1 GTATGGTTACCACCCTAGTCAAATCT--CCTTTTTCTTGTCTGAC
* * * * * * *
1244780 GTATGGTTACCA-CTTGGTTAGAT-T-C-TTTTCATTATGATTTAAT
1 GTATGGTTACCACCCTAGTCAAATCTCCTTTTTC--T-TG-TCTGAC
* * ** * * * *
1244823 ATATGATTATGACCCTAGTCAAATCCACCTCTTTCCTGTCTAAC
1 GTATGGTTACCACCCTAGTCAAAT-CTCCTTTTTCTTGTCTGAC
* *
1244867 GTATAGTTACCACCCTAGTCAAA--TCCTTTGCCTTCTTGTCTGAT
1 GTATGGTTACCACCCTAGTCAAATCTCCTTT---TTCTTGTCTGAC
* *
1244911 GTATGGTTACCACCCTAGTCAAATC-CTTTTCCTTCTTGTCTGAT
1 GTATGGTTACCACCCTAGTCAAATCTCCTTT--TTCTTGTCTGAC
* * * * *
1244955 GTATGGTTACCACCCTAGTCAGAT-TCTTTTCATTCTTATTTGAT
1 GTATGGTTACCACCCTAGTCAAATCTCCTTT--TTCTTGTCTGAC
* * * ** *
1244999 TTAAGGTTACCACCCTGGTCAAATCTACCTCCTTCTTGTCGGAC
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * * * *
1245043 ATAAGGTTACCACCCTAATC-AGT-T-CTTTTCATTTTGAAT-TGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTTT--TCTTG--TCTGAC
* * *
1245086 GTATGGTTACCACCCTAATC-AGT-T-CTTTTCGTTTTGAAT-TGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTTT--TCTTG--TCTGAC
* * *
1245129 GTATGGTTACCACCCTAATC-AGT-T-CTTTTCATTTTGAAT-TGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTTT--TCTTG--TCTGAC
* **
1245172 GTATGGTTACCACCCTAGTCAAACCTGCCTCCTTCTTGTCT-AC
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * * * * * **
1245215 ATATGGTTATCGCCATGGTCAAATTTGCCTCCTTCTTGTCTGAC
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * * * * * ** * *
1245259 GTATGTTTTCCACCAT-GTTAGAT-TCTTTTCATTCTAATTTAAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTT--TTCTTGTCTGAC
* * ** ** * *
1245302 GTGTGATTATGACCCTAGTCAAATCTACCTCCTTCTTGTTTGAT
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * * * *
1245346 GTACGGTTGCCACACTAGTCAGAT-T-C-TTTTCATTTCGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTTTTC--TT-G-TCTGAC
* * *
1245390 GTATGGTTACCACCCTAGTCAAATCTGCCTCTCTCTTGTCTGAT
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCTTGTCTGAC
* * * *
1245434 GTATGGTTACCACCCTAGTTAGAT-T-CTTTTCATTTTGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATCTCCTTTT--TCTTG-TCTGAC
* * **
1245478 TTATGGTTACCATCCTAGTCAAACTCTTATTTTTCTTGTCTGAC
1 GTATGGTTACCACCCTAGTCAAA-TCTCCTTTTTCTTGTCTGAC
* * * *
1245522 ATTTGGTTACCACCCTGGTCAAATCTGCCTTTTT-TCTGTCTAAC
1 GTATGGTTACCACCCTAGTCAAATCT-CCTTTTTCT-TGTCTGAC
1245566 GTATGGTTAC
1 GTATGGTTAC
1245576 TACCTTGGTC
Statistics
Matches: 789, Mismatches: 206, Indels: 124
0.71 0.18 0.11
Matches are distributed among these distances:
39 2 0.00
40 10 0.01
41 14 0.02
42 37 0.05
43 223 0.28
44 449 0.57
45 29 0.04
46 9 0.01
47 9 0.01
48 7 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (43 bp):
GTATGGTTACCACCCTAGTCAAATCTCCTTTTTCTTGTCTGAC
Found at i:1246445 original size:20 final size:20
Alignment explanation
Indices: 1246419--1246471 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
1246409 GTAGCCAAAC
*
1246419 TTGTATCGATACAC-AAAAG
1 TTGTATCGATACACAAAAAA
1246438 TATGTATCGATACACAAAAAA
1 T-TGTATCGATACACAAAAAA
1246459 TTGTATCGATACA
1 TTGTATCGATACA
1246472 TTGGCTTGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 1 0.03
20 25 0.81
21 5 0.16
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.28
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:1250548 original size:15 final size:15
Alignment explanation
Indices: 1250528--1250559 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1250518 ATAAAAGTGT
*
1250528 TCAAAATGAGGAAGC
1 TCAAAATGAAGAAGC
1250543 TCAAAATGAAGAAGC
1 TCAAAATGAAGAAGC
1250558 TC
1 TC
1250560 CAAACGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (15 bp):
TCAAAATGAAGAAGC
Found at i:1251942 original size:13 final size:13
Alignment explanation
Indices: 1251924--1251961 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1251914 CATTTTTCTT
1251924 TGTATCGATACAA
1 TGTATCGATACAA
*
1251937 TGTATCGATACAT
1 TGTATCGATACAA
1251950 TGTATCGATACA
1 TGTATCGATACA
1251962 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1253761 original size:20 final size:20
Alignment explanation
Indices: 1253716--1253767 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
1253706 GTAGCCAAAC
**
1253716 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
1253736 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
1253755 TTGTATCGATACA
1 TTGTATCGATACA
1253768 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:1254826 original size:44 final size:44
Alignment explanation
Indices: 1254542--1260823 Score: 572
Period size: 44 Copynumber: 143.5 Consensus size: 44
1254532 TTCTTGTCTA
** * * *
1254542 ACGTATGGTTACCACCCCAGCCAAATTTGCCT-TTGTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTT-TCCTATTTG
* * * * ** ** *
1254586 ATGTATGGTTACTACCTTGGTCAGATTCTTTCAATTT-CAATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * * *
1254630 ATGTATGGCTACCACCCTGGTCAAATCTGCCTCGTTCGTA-TCG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * * * * *
1254673 ACATATGGTTACCGCCATAGTCAAATCTGCCTCCTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * *
1254717 ATGTATGGTTACCACCCTAGTTAGAT-T-CTTTTTATTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTAC-CTCT-TTCCTATTTG
* * ** * *
1254761 ACGTAAGGTTGCTGCCATGGTCAAATCTACCTCTTTCCTATCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * *** * *
1254805 ACGTATGGTTACCACCCTGGTCAGATTTTTTTCCTTCCAATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * * *
1254849 ACGTAAGGTTACCACCCTGGTCAAATTTGCCACTCTT-CTGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * * ** *
1254893 ATC-TATGGTTACTACCTTGGTGATATTCT-TTTCATTT-CGATTTG
1 A-CGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
* * * * *
1254937 ATGTATGGTTACCACCCTGGTCAAATATGCCT-TTCTTCTATCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTT-TCCTATTTG
* ** *
1254981 ACGTATGGTTACCACCCTGGTCAGATTCTATTTATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCT-ATTTG
* * * * *
1255025 ACGTATGGTTATCACCTTGGTCAAATCTACCTATCTTT--TGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACC--TCTTTCCTATTTG
* * * *** * * *
1255069 ATGTATGGTTACCACCGTAGTTTGAT-T--TTTTTATTCTAATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTT-TCCT-ATTTG
* * * * *
1255112 ATGTATTGTTATCACCCTGGTCAAATCTACCTCTCTCCTATGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * **
1255156 ACGTATGGTTACCACCATAGTCAGATTCT-TTTCATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCT-ATTTG
* ** * ** * *
1255200 A-GTTATGGTTACCACCCTAGTCAAATCTGTCTCTCTATTGTTTC
1 ACG-TATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * *** *
1255244 ACGCATGGTTGCCACCCTGGTTAGATTTTTTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTC-TTTCCTATTTG
* ** * * ** *
1255288 ACTTATGGTTACCATTCTAGTCAAA-CT-CCTATTTTTTTATCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCT-CTTTCCTATTTG
* * * * * * * * *
1255331 ATGTATAGTTACCACCCTGGTCAACTTTGCTTCTATT-TTGTGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * ** * * *
1255375 ACGTATGGTTACTACCTTGGTCATAT-TATTTTTATTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * * * *
1255419 ATGTATGGCTACCACCCTGGTTAAATCTGCCTCTCTT-TTATCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * * * *** * * *
1255463 GCGTATGGTTACCACCCTAGTTAGATTTTTTTATTT-CGAATTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * ** * **
1255506 ACGTATGGTTATCACCCTGGTCAAATCTACCTCTCTGTTGTGAG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * ** * *
1255550 ATGTATGGTTACCACCTTGGTTAGATTCT-TTTCATT-CTGAATTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCT-ATTTG
* * * * * * *
1255594 ATGTAGGGTTACCACCTTGGTCAAAT-TGGCCTCTTTCCTGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCT-ACCTCTTTCCTATTTG
* * ** * * *
1255638 ACGTATGGCTACCACCCTGGTCAGAT-TATTTTTATTTCAATTT-
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * * * **
1255681 AAGATATGGTTACCACCCTGGTTAAATTTGCCTCATTTTC-ATCCG
1 ACG-TATGGTTACCACCCTGGTCAAATCTACCTC-TTTCCTATTTG
* * * ** *
1255726 ATGTATGGTTACCACCCTAGTCAGATTCT-TTTCATTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * ** ** * *
1255770 ACATAAGGTTACCAGCCTGGTCAGTTC-ATTTCGTT-ATGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCT-ATTTG
* * * * * *
1255813 ACGTATGGCTACCACTCTGGTCAAATCTGCCTCCTACCTA--TC
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
** * * * * * * *
1255855 ATCAAATGGTTACCACCATAGTCAATTTTGCCTCTTTACC-GTCTG
1 A-CGTATGGTTACCACCCTGGTCAAATCTACCTCTTT-CCTATTTG
* * * * * * * * *
1255900 ACATGTGGTTACTA-CCTGGTTAGAT-T-CTTTGCATT-ATGATTTA
1 ACGTATGGTTACCACCCTGGTCAAATCTAC-CT-CTTTCCT-ATTTG
* * * * *
1255943 ACGTATGATTACGACCCTAGTCAAATCTGCCTCCTTCAC-ATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTC-CTATTTG
* * * * * *
1255987 ATGTATGATTACAACCCTGGTCAGAT-T--CTTTTCATCCTAATTTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTT--TCCT-ATTTG
** * * * * *
1256031 ACGTATGGTTACCACCCTGGTCAGGTCTGCCT-TCTTCTTGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
** * * * ** ** *
1256075 ATTTATGGTTGCCACCATAGTCAGGTTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
* * * * * * *
1256119 ACGTCTGGTTGCCATCCTGGTCAAACTCT-CATCTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAA-TCTACCTCTTTCCTATTTG
* *
1256163 ACGTATGGTTACCACCCTGGTCAAATCTACCACTCTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * **
1256207 ATGTATGGTTACTACCTTGGTCAGATTCT-TTTCATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCT-ATTTG
* * * * * *
1256251 ATGTATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTA-TCG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * ** * * * * *
1256294 GCATATGGTTACCACTATTGTCAAATCTGCCTCTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * ** * *
1256338 ATGTATGGTTACCACCCTAGTCAGATTCT-TTTCATTCCTATTTA
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * *
1256382 ACGTAAGGTTGCCACCCTAGTCAAATTTACCTCTTTCCTGTTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * *** *
1256426 ACGTATGGTTACCACTCTTGTCAGATTTTTTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTC-TTTCCTATTTG
* * * * * *
1256470 -CGTACGGTTATCACCTTGGCCGAATTTGA-CTCTCTT-C-AGTTTG
1 ACGTATGGTTACCACCCTGGTCAAATCT-ACCTCT-TTCCTA-TTTG
* * ** * * ** *
1256513 ATGCATGGTTAATACCTTGGTCATATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
* * * * * *
1256557 ACGTAAGGTTACCACCCTGGTCAAATATGCCTCCTTCCTATCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * **
1256601 ACGTAT-GTTACCACCCTGGCCAGAT-T-CTTTTTTTTTATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * *
1256642 ACGTATGGTTATCTCCTTGGTCAAATCTACCT-TTCTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTT-TCCTATTTG
* ** * *
1256686 ACGTATGGTTACCACCCTGGTCAAGTTCT-TTTCATT-CTAATTTA
1 ACGTATGGTTACCACCCTGGTCAA-ATCTACCTCTTTCCT-ATTTG
* * * * * * * *
1256730 ACGTATGGTTATCACCCTAGTCAAATCTATCTCTCTCTTCTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
** * ** **
1256774 ATATACGGTTACCACCCAAGTCAAATTCT-TTTCATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCAAA-TCTACCTC-TTTCCT-ATTTG
* * * *
1256818 A-GTTATGGTTACCACCCTAGTCAAATCTGCCTCTTTCATGTTTG
1 ACG-TATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * *
1256862 ACGTATGGTTACCACCCTGGTTAGATTCTA-TTCATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCT-ATTTG
* * * * * * * *
1256906 ACTTATGGTTCCCATCCTGGTCAAATATGCCTCTCT-CTCGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCT-ATTTG
* * * ** * *
1256950 ACATACGGTTACCACCCTGGTCAGATTCTAATTATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * *
1256994 ACATAT-GTTATCACTCTGGCCAAATCTA-C-CTTTCTCT-TGCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTC-CTAT-TTG
* * * * *** *
1257036 ATGTACGGTTACCACCCTAGTCAAATTTTTTTCATT-CTGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCT-ATTTG
* * * * * *
1257080 ACGTATGGTTATCACCCTGGTCAAATTTACCTCTCTCTTGTGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * ** * *
1257124 ACATACGGTTACCACCCTAGTCAGATTCT-TTTCATTT-CGACTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
* ** * ** *
1257168 A-GTTACGGTTACCACCCAT-GTCAAATCTGTCTCTCTATTGTTTG
1 ACG-TATGGTTACCACCC-TGGTCAAATCTACCTCTTTCCTATTTG
** * * * ** *
1257212 ACACATGGTTGCCACACTGG-CTAGATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTC-A-AATCTACCTC-TTTCCTATTTG
* * * * * * * *
1257256 ACTTATGGCTGCCATCCTGGTCAAACTCTTA--TTTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAA-TC-TACCTCTTTCCTATTTG
* * * * * * * * *
1257300 ACGTATAGTTACCACCCTAGTCAACTTTGCTTCTATT-TTGTGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * *** * *
1257344 ACGTATGGTTACTACCTTGGTCATATTCTTTTTCATT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * *
1257388 ATGTATGGCTACCACCCTGGTCAAATCTGCCTCTCTT-CTATCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* *** * *
1257432 ACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * *
1257476 ACGTATGGTTATCACGCTGGTCAAATCTACCTCTCTT-CTGTGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * * ** * * *
1257520 ATGTACGGTTACCACCCTAGTCAGAT-TCATTTCATTCCGAATTG
1 ACGTATGGTTACCACCCTGGTCAAATCT-ACCTCTTTCCTATTTG
* * * * *
1257564 ACGTAGGGTTACCACCTTGGTCAAATC-AGCCTCTTTCCTGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTA-CCTCTTTCCTATTTG
* ** ** * * ** *
1257608 ATGTATGGCAACCACCCTGGTCTGAT-T-CTTTTTATTTTAATTTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTT-TCCT-ATTTG
* * * *
1257652 ACAG-ATGGTTACCACCCTGGTCAAAT-TCGCCTCCTTTTC-GTCTG
1 AC-GTATGGTTACCACCCTGGTCAAATCT-ACCT-CTTTCCTATTTG
* * * ** *
1257696 ATGTATGGTTACCACCCTAGTCAGATTCT-TTTCATTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * **
1257740 ACATAAGGTTACCACCCTGGTCAAATCTACCTCTTTCCTGTCGG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* ** ** **
1257784 ACGTAAGGTTACCAGTCTGGTCAGTTCT-TTTCGTTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTC-TTTCCT-ATTTG
* * * * * *
1257827 ATGTATGGCTGCCACCCTAGTCAAAT-TAGCCTCCTTT-C-A-GTC
1 ACGTATGGTTACCACCCTGGTCAAATCTA-CCT-CTTTCCTATTTG
* * * * * * * * * ** * *
1257869 AAGAAATGGTAACCACCATAGTCAATTCTGCCCCCTTAGTGTCTG
1 ACG-TATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * * * * ** *
1257914 GCGTATGGTTTCTA-CCTAGTTAGAT-T-CTTTGCATTCAGATTTA
1 ACGTATGGTTACCACCCTGGTCAAATCTAC-CT-CTTTCCTATTTG
* * * ** * *
1257957 ACGTATGATTACAACCCTAGTCAAATCTACCTCCCTCCTCTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * *** * * * *
1258001 ACGTACGGTTACCACCCTGGTCAGATTTTTTTCATTCCAAATTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
** *
1258045 ACGTATGGTTACCACCCTGGTCAGGTC-AGCCTTCTTT--TTTTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTA-CC-TCTTTCCTATT-TG
* * * ** *
1258089 ATGTATGGTTACCACCATGGTCAGATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
** * * * * * * *
1258133 AAATATGGTTACCATCCTGGTTGAACTCTTA--ACTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGG-TCAAATC-TACCTCTTTCCTATTTG
* * *
1258177 ACGTACGGTTACCACCCTGGTCAAATCTGCCTCTCTT-TTATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * ** *
1258221 ATGTATGGTTACTACCTTGGTCAAATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCAAA-TCTACCTC-TTTCCTATTTG
* * * * * * **
1258265 ATGTATGGTTACCACCCTAGTCAAATCTGCCTCCTCCCT-GTCA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * * * *
1258308 ACATATAGTTACCACCATTGTCAAATCTACCTCCTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * ** ** *
1258352 ATGTATGGTTACCACCCTAGTCAGATTCT-TTTCAATCCTATTTA
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * * **
1258396 ATGTAAGGTTGCCACCCTGGTTAAATTTACCTCTTTCCTGCTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * * *
1258440 ATGTATGGTTACCACCCTTGTTAGATTTAACTCTCTT-CTATCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
** ** * * ** *
1258484 ACACATGGTTAATACCTTGGTCATATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
* ** * * **
1258528 ATGTATAATTACCACCCTGGTCAAATATGCCTCTTTCCTAGCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * ** * * *
1258572 ACGTAT-GTTACCACCCAGGTCAGAT-T-TTTTTTTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * * * *
1258613 ACGTATGCTTATCACCCTGCTGAAATCTACCTCTCTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* ** **
1258657 ATGTATGGTTACCACCCTGGTCAGGTTCT-TTTCATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCT-ATTTG
* * * * *
1258701 ACGTATGGTTATCACCCTAGTCAAATCTATCTCTCTCCTGTTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * ** *
1258745 ACGTACGGTTACCACCCTAGTCAAATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCAAA-TCTACCTC-TTTCCTATTTG
* ** * * * * *
1258789 A-GTTATGGTTACTACCCTAATTAAATCTACCTGTCTCTTGTTTG
1 ACG-TATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * *
1258833 ATGTATGGTTACCACCCTGGTTAGAT-T-CCTTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACC--TC-TTTCCTATTTG
* * * * * * * *
1258877 ACTTTTGGTTACCATCTTGGTCAAACTCTTA--TTTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAA-TC-TACCTCTTTCCTATTTG
* * * * * * *
1258921 ACATATAGG-TACCACCCTGGTGAAATTTGCTTCTACTT--TGTGTG
1 ACGTAT-GGTTACCACCCTGGTCAAATCTACCTCT--TTCCTATTTG
* * * * * * *
1258965 ATGTATGGTTACCACCCTAGTCAAATATGCCTCTCTCCTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * ** * *
1259009 ACTTATGGTTACCACCTTGGTCAGATTCTAATTATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * * * * *
1259053 AC-TATGGTTATCGCTCTGGTCAAATCTACCTCTCTCTTGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * ***
1259096 ATGTATGGTTACCACCCTAGTCAGAT-TTTTTCATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTC-TTTCCT-ATTTG
* * * * * * * *
1259139 ATGTATGGTTATCACCTTCGTTAAATCTACCTCTCT-CTGTGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * ** *
1259182 ACGTACGGTTACCA-CCTTGTCGGAT-T--CT-TTT-CAATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * *
1259220 ATTTAAGTTAGGGTTACCACCCTAGTCAAATCTACCTCTCTT-TTGTTTG
1 ----ACG-TATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * ** * *
1259269 ACGCATGGTTGCTACCCTGGT-AAGATTCT-TTTCATTT-CGATCTG
1 ACGTATGGTTACCACCCTGGTCAA-A-TCTACCTC-TTTCCTATTTG
* * * * * * * *
1259313 ACTTATGGTTACCATCTTAGTCAAACTCTTA--TTTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAA-TC-TACCTCTTTCCTATTTG
* * * * ** * * * * * *
1259357 ACATATAGTTACCACCTTAGTTGACTTTGCTTCTATT-TTATGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * * * *** * *
1259401 ACATATGGTTACTACCTTGGTCATATTCTTTTTATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * *
1259445 ACGTATGGCTAGCACCCTGGTCAAATCTGCCTCTCTT-CTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
* * ** * * * *
1259489 ATGTATGGTTACCACTCTATTCAGAATC-A-TTTTATTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCT-TTCCTATTTG
* * * * *
1259533 ATGTATGGTTATCACCCTGGTCAAATCTACCTCTCTCCTGTGTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * ** * *
1259577 ATGTATAGTTACCACCCTTGTCAGAATCT-TTTCATTT-CGAATTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
* * * * * *
1259621 ATGTA-GCGTTACCACCTTGGTCAATTCGACCTCTTTCCTATCTA
1 ACGTATG-GTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * *** * * *
1259665 ATGTATGGCTACCACCTTGGTCAGATTCTTTTTATTT-CAATTTA
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * **
1259709 ACATATGGTTACCACCCTGGTCAAAT-T-CGCTTCATTTTC-GTCCG
1 ACGTATGGTTACCACCCTGGTCAAATCTAC-C-TC-TTTCCTATTTG
* * * ** * *
1259753 ATC-TATGGTTGCCACCCTAGTCAGATTCT-TTTCATTCCTTTTTG
1 A-CGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * *
1259797 AGGTAAGGTTACCACCCTAGTCAAATCTACCTCTTTCCTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
** * * * ** **
1259841 ATATAAGGTTACCAGCCTGGTTAGTTCT-TTTCATTT--TGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTC-TTTCCT-ATTTG
*** * ** **
1259884 ACGTAT-GTCTACCACCCTGGTCAAATCTGTATCCTTCC-CGTCA
1 ACGTATGGT-TACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
** * * * * * * *
1259927 ACAAATAGTTACCACCATAGTCAATTCTACC-CCTTACTATCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * *
1259970 ATGTATGGTTACTA-CCTGGTTAAAT-T-CTTTGCATT-CTGATTTA
1 ACGTATGGTTACCACCCTGGTCAAATCTAC-CT-CTTTCCT-ATTTG
* * * * *
1260013 ACGTATGATTACAACCCTAGTCAAATCTGCCTCCTT--TATCTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTAT-T-TG
* * ** * * *
1260057 ACGTACGGTTACCACCCTGGTCAGATTCT-TTTCATTCCAATTTA
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
** * * * *
1260101 ACGTATGGTTACCACCCTGGTCAGGTC-AGCCTTTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTA-CCTCTTTCCTATTTG
* * * ** * *
1260145 ATGTATGGTTACCACCATGGTCAGAT-TCATTTCTTTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCT-ACCTCTTTCCTATTTG
* * * * * *
1260189 ACATATGGTTACCATCCTAGTCAAACTCTTA--TCTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAA-TC-TACCTCTTTCCTATTTG
* * * *
1260233 CCGTATAGTTACCACCCTGGTCAAATCTGCCTCTCTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * ** *
1260277 ATGTATGGTTACTACCTTGGTCAGATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTC-TTTCCTATTTG
* ** * * * *
1260321 ATGTATGGTTACCACTATAGTCAAATCTGCCTCCTT-CT-TGTCG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTAT-TTG
* * ** * * * * *
1260364 ACATATGGTTACCACCATTATCAAATCT-GCTGCCTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCT-CTTTCCTATTTG
* * * * ** * *
1260408 ATGTATGCTTACCACCCTAGTCAGATTCT-TTTCATTCCTATTTA
1 ACGTATGGTTACCACCCTGGTCA-AATCTACCTCTTTCCTATTTG
* * * * **
1260452 ACGTAAGGTTGCCACCTTGGTTC-AATTTACCTCTTTCCTGCTTG
1 ACGTATGGTTACCACCCTGG-TCAAATCTACCTCTTTCCTATTTG
* * ** * *
1260496 ATGTATGGTTACCACCCTTGGTCATATTCT-TTTCATTT-CGATTCG
1 ACGTATGGTTACCACCC-TGGTCA-AATCTACCTC-TTTCCTATTTG
* * * * * * * *
1260541 ATGTACGGTTACCATCCTAGTCAAATATGCCTCTTTCTTATCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * *
1260585 ACATAT-GTTACCACTC-GGTCAAAT-T-CTTTTTTCTTTGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTC-CT-ATTTG
** * * * * *
1260627 ACGTATGGTTATAACCTTGGTCAAATCTACCTCTCTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * * * * * *
1260671 ACGTATGGTTATCACCTTAGTTAAATCTACCTCTCTCTTGTTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
* * ** *
1260715 ACGTACGGTTACCACCCTAGTCAAATTCT-TTTCATTT-CGATTTG
1 ACGTATGGTTACCACCCTGGTCAAA-TCTACCTC-TTTCCTATTTG
* * * * *
1260759 A-GTTATGGTTACCACCCTTGTCAAATCTGCCTCTCTT-TTGTGTG
1 ACG-TATGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTATTTG
*
1260803 ACGCATGGTTACCACCCTGGT
1 ACGTATGGTTACCACCCTGGT
1260824 TAGATTCTTT
Statistics
Matches: 4291, Mismatches: 1587, Indels: 720
0.65 0.24 0.11
Matches are distributed among these distances:
38 6 0.00
39 5 0.00
40 11 0.00
41 39 0.01
42 134 0.03
43 830 0.19
44 2902 0.68
45 313 0.07
46 35 0.01
47 9 0.00
48 1 0.00
49 6 0.00
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.40
Consensus pattern (44 bp):
ACGTATGGTTACCACCCTGGTCAAATCTACCTCTTTCCTATTTG
Found at i:1255349 original size:219 final size:218
Alignment explanation
Indices: 1255110--1255516 Score: 510
Period size: 219 Copynumber: 1.9 Consensus size: 218
1255100 TATTCTAATT
* * *
1255110 TGATGTATTGTTATCACCCTGGTCAAATCTACCTCTCTCCTATGTGACGTATGGTTACCACCATA
1 TGATGTATAGTTACCACCCTGGTCAAATCTACCTCTATCCTATGTGACGTATGGTTACCACCATA
* * * *
1255175 GTCAGATTCTTTTCATTTTGATTTGA-GTTATGGTTACCACCCTAGTCAAATCTGTCTCTCTATT
66 GTCAGATTATTTTCATTTCGATTTGATG-TATGGCTACCACCCTAGTCAAATCTGCCTCTCTATT
* * * * * *
1255239 GTTTCACGCATGGTTGCCACCCTGGTTAGATTTTTTTCATTTCGATTTGACTTATGGTTACCATT
130 ATCTCACGCATGGTTACCACCCTAGTTAGATTTTTTT-ATTTCGAATTGACGTATGGTTACCATT
1255304 CTAGTCAAACTCCTATTTTTTTATC
194 CTAGTCAAACTCCTATTTTTTTATC
* * * * ** * * * *
1255329 TGATGTATAGTTACCACCCTGGTCAACTTTGCTTCTATTTTGTGTGACGTATGGTTACTACCTTG
1 TGATGTATAGTTACCACCCTGGTCAAATCTACCTCTATCCTATGTGACGTATGGTTACCACCATA
* * * * *
1255394 GTCATATTATTTTTATTTCGATTTGATGTATGGCTACCACCCTGGTTAAATCTGCCTCTCTTTTA
66 GTCAGATTATTTTCATTTCGATTTGATGTATGGCTACCACCCTAGTCAAATCTGCCTCTCTATTA
** *
1255459 TCTGGCGTATGGTTACCACCCTAGTTAGATTTTTTTATTTCGAATTGACGTATGGTTA
131 TCTCACGCATGGTTACCACCCTAGTTAGATTTTTTTATTTCGAATTGACGTATGGTTA
1255517 TCACCCTGGT
Statistics
Matches: 156, Mismatches: 31, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
218 20 0.13
219 135 0.87
220 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (218 bp):
TGATGTATAGTTACCACCCTGGTCAAATCTACCTCTATCCTATGTGACGTATGGTTACCACCATA
GTCAGATTATTTTCATTTCGATTTGATGTATGGCTACCACCCTAGTCAAATCTGCCTCTCTATTA
TCTCACGCATGGTTACCACCCTAGTTAGATTTTTTTATTTCGAATTGACGTATGGTTACCATTCT
AGTCAAACTCCTATTTTTTTATC
Found at i:1255524 original size:175 final size:175
Alignment explanation
Indices: 1255333--1255762 Score: 438
Period size: 175 Copynumber: 2.5 Consensus size: 175
1255323 TTTATCTGAT
* * * * *
1255333 GTATAGTTACCACCCTGGTCAACTTTGCTTCTATTTTGTGTGACGTATGGTTACTACCTTGGTCA
1 GTATGGTTACCACCCTGGTCAAATTTGCCTCTATTTTGTGAGACGTATGGTTACCACCTTGGTCA
* * * * * *
1255398 TATTATTTTTATT-TCGATTTGATGTATGGCTACCACCCTGGTTAAATCT-GCCTCTCTT-TTAT
66 GATTATTTTCATTCT-GAATTGATGTAGGGCTACCACCCTGGTCAAAT-TGGCCTCT-TTCCTAT
** * * *
1255460 CTGGCGTATGGTTACCACCCTAGTTAGATT-TTTTTATTTCGAATTGAC
128 CTAACGTATGGCTACCACCCTAGTCAGATTATTTTTATTTC-AATTGAA
* * * * * * *
1255508 GTATGGTTATCACCCTGGTCAAATCTACCTCTCTGTTGTGAGATGTATGGTTACCACCTTGGTTA
1 GTATGGTTACCACCCTGGTCAAATTTGCCTCTATTTTGTGAGACGTATGGTTACCACCTTGGTCA
* * * *
1255573 GATTCTTTTCATTCTGAATTGATGTAGGGTTACCACCTTGGTCAAATTGGCCTCTTTCCTGTCTA
66 GATTATTTTCATTCTGAATTGATGTAGGGCTACCACCCTGGTCAAATTGGCCTCTTTCCTATCTA
* *
1255638 ACGTATGGCTACCACCCTGGTCAGATTATTTTTATTTCAATTTAA
131 ACGTATGGCTACCACCCTAGTCAGATTATTTTTATTTCAATTGAA
* * ** * * *
1255683 GATATGGTTACCACCCTGGTTAAATTTGCCTC-ATTTTCATCCGATGTATGGTTACCACCCTAGT
1 G-TATGGTTACCACCCTGGTCAAATTTGCCTCTATTTT-GTGAGACGTATGGTTACCACCTTGGT
*
1255747 CAGATTCTTTTCATTC
64 CAGATTATTTTCATTC
1255763 CTATTTGACA
Statistics
Matches: 208, Mismatches: 41, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
174 3 0.01
175 132 0.63
176 73 0.35
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.41
Consensus pattern (175 bp):
GTATGGTTACCACCCTGGTCAAATTTGCCTCTATTTTGTGAGACGTATGGTTACCACCTTGGTCA
GATTATTTTCATTCTGAATTGATGTAGGGCTACCACCCTGGTCAAATTGGCCTCTTTCCTATCTA
ACGTATGGCTACCACCCTAGTCAGATTATTTTTATTTCAATTGAA
Found at i:1255555 original size:219 final size:219
Alignment explanation
Indices: 1255152--1255570 Score: 493
Period size: 219 Copynumber: 1.9 Consensus size: 219
1255142 CTCTCTCCTA
* * *
1255152 TGTGACGTATGGTTACCACCATAGTCAGATTCTTTTCATTTTGATTTGAGTTATGGTTACCACCC
1 TGTGACGTATGGTTACCACCATAGTCAGATTATTTTCATTTCGATTTGAGTTATGGCTACCACCC
* * * * *
1255217 TAGTCAAATCTGTCTCTCTATTGTTTCACGCATGGTTGCCACCCTGGTTAGATTTTTTTCATTTC
66 TAGTCAAATCTGCCTCTCTATTATCTCACGCATGGTTACCACCCTAGTTAGATTTTTTTCATTTC
* * ** * * * *
1255282 GATTTGACTTATGGTTACCATTCTAGTCAAACTCCTATTTTTTTATCTGATGTATAGTTACCACC
131 GAATTGACGTATGGTTACCACCCTAGTCAAACTCCTACTCTGTTATCAGATGTATAGTTACCACC
1255347 CTGGTCAACTTTGCTTCTATTTTG
196 CTGGTCAACTTTGCTTCTATTTTG
* * * * *
1255371 TGTGACGTATGGTTACTACCTTGGTCATATTATTTTTATTTCGATTTGA-TGTATGGCTACCACC
1 TGTGACGTATGGTTACCACCATAGTCAGATTATTTTCATTTCGATTTGAGT-TATGGCTACCACC
* * * ** *
1255435 CTGGTTAAATCTGCCTCTCTTTTATCTGGCGTATGGTTACCACCCTAGTTAGATTTTTTT-ATTT
65 CTAGTCAAATCTGCCTCTCTATTATCTCACGCATGGTTACCACCCTAGTTAGATTTTTTTCATTT
* * * * *
1255499 CGAATTGACGTATGGTTATCACCCTGGTCAAATCTACCT-CTCTGTTGTGAGATGTATGGTTACC
130 CGAATTGACGTATGGTTACCACCCTAGTCAAA-CT-CCTACTCTGTTATCAGATGTATAGTTACC
*
1255563 ACCTTGGT
193 ACCCTGGT
1255571 TAGATTCTTT
Statistics
Matches: 164, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
218 31 0.19
219 130 0.79
220 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (219 bp):
TGTGACGTATGGTTACCACCATAGTCAGATTATTTTCATTTCGATTTGAGTTATGGCTACCACCC
TAGTCAAATCTGCCTCTCTATTATCTCACGCATGGTTACCACCCTAGTTAGATTTTTTTCATTTC
GAATTGACGTATGGTTACCACCCTAGTCAAACTCCTACTCTGTTATCAGATGTATAGTTACCACC
CTGGTCAACTTTGCTTCTATTTTG
Found at i:1257072 original size:350 final size:348
Alignment explanation
Indices: 1256315--1257280 Score: 1106
Period size: 350 Copynumber: 2.8 Consensus size: 348
1256305 CCACTATTGT
* *
1256315 CAAATCTGCCTCTT-TCTTGTCTGATGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCTAT
1 CAAATCTACCT-TTCTCTTGTCTGATGTATGGTTACCACCCTAGTCAAATTCTTTTCATT-CTAT
* ** * * * * * *
1256379 TTAACGTAAGGTTGCCACCCTAGTCAAATTTACCTCTTTCCTGTTTGACGTATGGTTACCACTCT
64 TTAACGTATGGTTATCACCCTAGTCAAATTTACCTCTCTCTTGTCTGACATACGGTTACCACCCT
* * * * * * * * *
1256444 TGTCAGATTTTTTTCATTTCGATTTGCG-TACGGTTATCACCTTGGCCGAATTTGACTCTCTTCA
129 AGTCAGATTCTTTTCATTTCGATTTGAGTTACGGTTACCACCCTAGTCAAATCTGACTCT-TTCA
* ** * * * * * *
1256508 -GTTTGATGCATGGTTAATACCTTGGTCATATTCTTTTCATTTCGATTTGACGTAAGGTTACCAC
193 TGTTTGACGCATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACTTATGGTTACCAT
* * * **
1256572 CCTGGTCAAATATGCCTCCTTCCTATCTAACGTATGTTACCACCCTGGCCAGATTCTTTTTTTTT
258 CCTGGTCAAATATGCCTCCTTCCTATCTAACATAGGTTACCACCCTGGCCAGATTCTTTATTTCG
* * *
1256637 ATTTGACGTATGGTTATCTCCTTGGT
323 ATTTGACATATGGTTATCACCTTGGC
* * *
1256663 CAAATCTACCTTTCTCTTGTCTGACGTATGGTTACCACCCTGGTCAAGTTCTTTTCATTCTAATT
1 CAAATCTACCTTTCTCTTGTCTGATGTATGGTTACCACCCTAGTCAAATTCTTTTCATTCT-ATT
* * * * * *
1256728 TAACGTATGGTTATCACCCTAGTCAAATCTATCTCTCTCTTCTCTAATATACGGTTACCACCCAA
65 TAACGTATGGTTATCACCCTAGTCAAATTTACCTCTCTCTTGTCTGACATACGGTTACCACCCTA
* * * *
1256793 GTCAAATTCTTTTCATTTTGATTTGAGTTATGGTTACCACCCTAGTCAAATCTGCCTCTTTCATG
130 GTCAGATTCTTTTCATTTCGATTTGAGTTACGGTTACCACCCTAGTCAAATCTGACTCTTTCATG
* * * *
1256858 TTTGACGTATGGTTACCACCCTGGTTAGATTCTATTCATTTTGATTTGACTTATGGTTCCCATCC
195 TTTGACGCATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACTTATGGTTACCATCC
* * *
1256923 TGGTCAAATATGCCT-C-TCTCTCGTCTGACATACGGTTACCACCCTGGTCAGATTCTAATTATT
260 TGGTCAAATATGCCTCCTTC-CT-ATCTAACATA-GGTTACCACCCTGGCCAGATTCT--TTATT
1256986 TCGATTTGACATAT-GTTATCA-CTCTGGC
320 TCGATTTGACATATGGTTATCACCT-TGGC
* *
1257014 CAAATCTACCTTTCTCTTG-CTGATGTACGGTTACCACCCTAGTCAAATTTTTTTCATTCTGATT
1 CAAATCTACCTTTCTCTTGTCTGATGTATGGTTACCACCCTAGTCAAATTCTTTTCATTCT-ATT
* * *
1257078 TGACGTATGGTTATCACCCTGGTCAAATTTACCTCTCTCTTGTGTGACATACGGTTACCACCCTA
65 TAACGTATGGTTATCACCCTAGTCAAATTTACCTCTCTCTTGTCTGACATACGGTTACCACCCTA
* * *
1257143 GTCAGATTCTTTTCATTTCGACTTGAGTTACGGTTACCACCC-ATGTCAAATCTGTCTCTCT-AT
130 GTCAGATTCTTTTCATTTCGATTTGAGTTACGGTTACCACCCTA-GTCAAATCTGACTCTTTCA-
* * * * * *
1257206 TGTTTGACACATGGTTGCCACACTGGCTAGATTCTTTTCATTTCGATTTGACTTATGGCTGCCAT
193 TGTTTGACGCATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACTTATGGTTACCAT
1257271 CCTGGTCAAA
258 CCTGGTCAAA
1257281 CTCTTATTTT
Statistics
Matches: 519, Mismatches: 87, Indels: 22
0.83 0.14 0.04
Matches are distributed among these distances:
347 6 0.01
348 133 0.26
349 100 0.19
350 237 0.46
351 28 0.05
352 15 0.03
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (348 bp):
CAAATCTACCTTTCTCTTGTCTGATGTATGGTTACCACCCTAGTCAAATTCTTTTCATTCTATTT
AACGTATGGTTATCACCCTAGTCAAATTTACCTCTCTCTTGTCTGACATACGGTTACCACCCTAG
TCAGATTCTTTTCATTTCGATTTGAGTTACGGTTACCACCCTAGTCAAATCTGACTCTTTCATGT
TTGACGCATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACTTATGGTTACCATCCT
GGTCAAATATGCCTCCTTCCTATCTAACATAGGTTACCACCCTGGCCAGATTCTTTATTTCGATT
TGACATATGGTTATCACCTTGGC
Found at i:1257436 original size:88 final size:87
Alignment explanation
Indices: 1257298--1261181 Score: 892
Period size: 88 Copynumber: 44.3 Consensus size: 87
1257288 TTTTCTTGTC
* * * * * * * * * *
1257298 TGACGTATAGTTACCACCCTAGTCAACTTTGCTTCTATTTTGTGTGACGTATGGTTACTACCTTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
*
1257363 GTCATATTCTTTTTCATTCGATT
66 GTCAGATTC-TTTTCATTCGATT
* * * *
1257386 TGATGTATGGCTACCACCCTGGTCAAATCTGCCTCTCTTCTATCTAACGTATGGTTACCACCCTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
*
1257451 GTCAGATTCTTTTTATTTCGATT
66 GTCAGATTCTTTTCA-TTCGATT
* * * * * * *
1257474 TGACGTATGGTTATCACGCTGGTCAAATCTACCTCTCTTCTGTGTGATGTACGGTTACCACCCTA
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
* *
1257539 GTCAGATTCATTTCATTCCGAAT
66 GTCAGATTCTTTTCATT-CGATT
* * * * * **
1257562 TGACGTAGGGTTACCACCTTGGTCAAATCAGCCTCT-TTCCTGTCTAATGTATGGCAACCACCCT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTT-CTGTCTGACGTATGGTTACCACCCT
* * **
1257626 GGTCTGATTCTTTTTATTTTAATT
65 GGTCAGATTCTTTTCA-TTCGATT
* * *
1257650 TAACAG-ATGGTTACCACCCTGGTCAAAT-TCGCCTC-CTTTTCGTCTGATGTATGGTTACCACC
1 TGAC-GTATGGTTACCACCCTGGTCAAATCT-GCCTCTCTTCT-GTCTGACGTATGGTTACCACC
* *
1257712 CTAGTCAGATTCTTTTCATTCCTATT
63 CTGGTCAGATTCTTTTCATT-CGATT
* * * * * **
1257738 TGACATAAGGTTACCACCCTGGTCAAATCTACCTCT-TTCCTGTCGGACGTAAGGTTACCAGTCT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTT-CTGTCTGACGTATGGTTACCACCCT
* *
1257802 GGTCAG-TTCTTTTCGTTTTGATT
65 GGTCAGATTCTTTTC-ATTCGATT
* * * * * * * *
1257825 TGATGTATGGCTGCCACCCTAGTCAAAT-TAGCCTC-CTTTCAGTC--AAGAAATGGTAACCACC
1 TGACGTATGGTTACCACCCTGGTCAAATCT-GCCTCTC-TTCTGTCTGACG-TATGGTTACCACC
* * *** * *
1257886 ATAGTCA-ATTCTGCCCCCTTAG-TGT
63 CTGGTCAGATTCT-TTTCATTCGAT-T
* * * * * * * * * * * *
1257911 CTGGCGTATGGTTTCTA-CCTAGTTAGAT-T--CTTTGCATTCAGATTTAACGTATGATTACAAC
1 -TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-C-TTCTG-TCTGACGTATGGTTACCAC
* * ** ** *
1257972 CCTAGTCA-AATCTACCTCCCTC-CTCT
62 CCTGGTCAGATTCT-TTTCATTCGAT-T
* * ** * ** *
1257998 CTGACGTACGGTTACCACCCTGGTCAGAT-T-TTTTTCATTCCAAAT-TAACGTATGGTTACCAC
1 -TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TT-C-TGTCTGACGTATGGTTACCAC
* ** ***
1258060 CCTGGTCAG-GTCAGCCTTC-TTTTTTT
62 CCTGGTCAGATTC--TTTTCATTCGATT
* * * * * * ** *
1258086 CTGATGTATGGTTACCACCATGGTCAGAT-T-CTTTTCATT-TCGATTTGAAATATGGTTACCAT
1 -TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TTCT-G-TCTGACGTATGGTTACCAC
* * ** * *
1258148 CCTGGT-TGAACTCTTAACTTTCTTG-TC
62 CCTGGTCAG-ATTCTTTTCATTC--GATT
* * * * * * *
1258175 TGACGTACGGTTACCACCCTGGTCAAATCTGCCTCTCTTTTATTTGATGTATGGTTACTACCTTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
*
1258240 GTCAAATTCTTTTCATTTCGATT
66 GTCAGATTCTTTTCA-TTCGATT
* * * * * * *
1258263 TGATGTATGGTTACCACCCTAGTCAAATCTGCCTC-CTCCCTGTC-AACATATAGTTACCACCAT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCT-TCTGTCTGACGTATGGTTACCACCCT
* * * *
1258326 TGTCAAATCTACCTCCTTC-TT-G-TC
65 GGTCAGAT-T--CT-TTTCATTCGATT
* * * * * * * * * * * *
1258350 TGATGTATGGTTACCACCCTAGTCAGAT-T-CTTTTCAATCCTATTTAATGTAAGGTTGCCACCC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC--TTCTGTCTGACGTATGGTTACCACCC
* * * *
1258413 TGGTTAAATTTACCTCTTTC-CT-G-CT
64 TGGTCAGA-TT--CT-TTTCATTCGATT
* * * * * ** * ** ** *
1258438 TGATGTATGGTTACCACCCTTGTTAGATTTAACTCTCTTCTATCTGACACATGGTTAATACCTTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
*
1258503 GTCATATTCTTTTCATTTCGATT
66 GTCAGATTCTTTTCA-TTCGATT
* ** *
1258526 TGATGTATAATTACCACCCTGGTCAAATATGCCTCT-TTCCTAG-CTGACGTAT-GTTACCACCC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTT-CT-GTCTGACGTATGGTTACCACCC
* **
1258588 AGGTCAGATT-TTTTTTTTCGATT
64 TGGTCAGATTCTTTTCATTCGATT
* * * * * *
1258611 TGACGTATGCTTATCACCCTGCTGAAATCTACCTCTC-TCTTGTCTGATGTATGGTTACCACCCT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTC-TGTCTGACGTATGGTTACCACCCT
* *
1258675 GGTCAGGTTCTTTTCATTTTGATT
65 GGTCAGATTCTTTTCA-TTCGATT
* * ** * * * *
1258699 TGACGTATGGTTATCACCCTAGTCAAATCTATCTCTCTCCTGTTTGACGTACGGTTACCACCCTA
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
*
1258764 GTCAAATTCTTTTCATTTCGATT
66 GTCAGATTCTTTTCA-TTCGATT
* ** * * * * *
1258787 TGA-GTTATGGTTACTACCCTAATTAAATCTACCTGTC-TCTTGTTTGATGTATGGTTACCACCC
1 TGACG-TATGGTTACCACCCTGGTCAAATCTGCCTCTCTTC-TGTCTGACGTATGGTTACCACCC
* *
1258850 TGGTTAGATTCCTTTCATTTCGATT
64 TGGTCAGATTCTTTTCA-TTCGATT
* * * * * * * *
1258875 TGACTTTTGGTTACCATCTTGGTCAAA-CT-CTTATTTTTCTTGTCTGACATATAGG-TACCACC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCT-CTCTTC-TGTCTGACGTAT-GGTTACCACC
* * * * *
1258937 CTGGTGAAATT-TGCTTCTACTTTG-TG
63 CTGGTCAGATTCT-TTTC-A-TTCGATT
* * * * * *
1258963 TGATGTATGGTTACCACCCTAGTCAAATATGCCTCTCTCCTGTCTGACTTATGGTTACCACCTTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
*
1259028 GTCAGATTCTAATT-ATTTCGATT
66 GTCAGATTCT-TTTCA-TTCGATT
* * * * * *
1259051 TGAC-TATGGTTATCGCTCTGGTCAAATCTACCTCTC-TCTTGTCTAATGTATGGTTACCACCCT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTC-TGTCTGACGTATGGTTACCACCCT
* *
1259114 AGTCAGATT-TTTTCATTTTGATT
65 GGTCAGATTCTTTTCA-TTCGATT
* * * * * * * * *
1259137 TGATGTATGGTTATCACCTTCGTTAAATCTACCTCTC-TCTGTGTGACGTACGGTTACCA-CCTT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
* *
1259200 GTCGGATTCTTTTCAATTTGATT
66 GTCAGATTCTTTTC-ATTCGATT
* * * * * * * * *
1259223 T-AAGTTAGGGTTACCACCCTAGTCAAATCTACCTCTCTTTTGTTTGACGCATGGTTGCTACCCT
1 TGACG-TATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCT
* *
1259287 GGTAAGATTCTTTTCATTTCGATC
65 GGTCAGATTCTTTTCA-TTCGATT
* * * * * * * * * *
1259311 TGACTTATGGTTACCATCTTAGTCAAA-CT-CTTATTTTTCTTGTCTGACATATAGTTACCACCT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCT-CTCTTC-TGTCTGACGTATGGTTACCACCC
* * * ** *
1259374 TAGT-TGACTT-TGCTTCTATTTTATG
64 TGGTCAGA-TTCT-TTTC-ATTCGATT
* * * * *** * * * *
1259399 TGACATATGGTTACTACCTTGGTCATATTCTTTTTAT-TTC-GATTTGACGTATGGCTAGCACCC
1 TGACGTATGGTTACCACCCTGGTCA-AATCTGCCTCTCTTCTG-TCTGACGTATGGTTACCACCC
* * * *
1259462 TGGTCAAATCTGCCTCTC-TTCTG-TC
64 TGGTCAGAT-T-CTTTTCATTC-GATT
* * ** ** * * * *
1259487 TGATGTATGGTTACCACTCTATTCAGAATCAT-TTTAT-TTC-GATTTGATGTATGGTTATCACC
1 TGACGTATGGTTACCACCCTGGTCA-AATC-TGCCTCTCTTCTG-TCTGACGTATGGTTACCACC
* * * * *
1259549 CTGGTCAAATCTACCTCTC-TCCTG-TG
63 CTGGTCAGAT-T-CTTTTCATTC-GATT
* * * ** *
1259575 TGATGTATAGTTACCACCCTTGTCAGAATCT-TTTCAT-TTC-GAAT-TGATGTA-GCGTTACCA
1 TGACGTATGGTTACCACCCTGGTCA-AATCTGCCTC-TCTTCTG--TCTGACGTATG-GTTACCA
* *** * * *
1259635 CCTTGGTCA-ATTCGACCTCTTTCCTATC
61 CCCTGGTCAGATTC-TTTTCATT-CGATT
* * * * * *** * ** * * *
1259663 TAATGTATGGCTACCACCTTGGTCAGATTCTTTTTAT-TTCAATTTAACATATGGTTACCACCCT
1 TGACGTATGGTTACCACCCTGGTCA-AATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCT
* ** *
1259727 GGTCAAATTCGCTTCATTTTCG-TC
65 GGTCAGATTCTTTTCA--TTCGATT
* * * * * * * * * *
1259751 CGATC-TATGGTTGCCACCCTAGTCAGAT-T-CTTTTCATTCCTTTTTGAGGTAAGGTTACCACC
1 TGA-CGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TT-CTGTCTGACGTATGGTTACCACC
* * * *
1259813 CTAGTCAAATCTACCTCTTTC-CT-G-TC
63 CTGGTCAGAT-T--CT-TTTCATTCGATT
** * * * * * * * *
1259839 TGATATAAGGTTACCAGCCTGGT-TAGT-T-CTTTTCATTTTGATTTGACGTAT-GTCTACCACC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TTCTG-TCTGACGTATGGT-TACCACC
* * * ***
1259900 CTGGTCA-AATCTGTATCCTTCCCGT
63 CTGGTCAGATTCT-TTTCATTCGATT
** ** * * * * * * * *
1259925 CAACAAATAGTTACCACCATAGTCAATTCTACC-C-CTTACTATCTGATGTATGGTTACTA-CCT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTT-CTGTCTGACGTATGGTTACCACCCT
* * *
1259987 GGTTAAATTCTTTGCATTCTGATT
65 GGTCAGATTCTTTTCATTC-GATT
* * * * * * *
1260011 TAACGTATGATTACAACCCTAGTCAAATCTGCCTC-CTTTATCTCTGACGTACGGTTACCACCCT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TTCTGTCTGACGTATGGTTACCACCCT
*
1260075 GGTCAGATTCTTTTCATTCCAATT
65 GGTCAGATTCTTTTCATT-CGATT
* ** * * * *
1260099 TAACGTATGGTTACCACCCTGGTCAGGTCAGCCT-TTTTCTTGTCTGATGTATGGTTACCACCAT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTC-TGTCTGACGTATGGTTACCACCCT
* *
1260163 GGTCAGATTCATTTCTTTTCGATT
65 GGTCAGATTCTTTTC-ATTCGATT
* * * * * * *
1260187 TGACATATGGTTACCATCCTAGTCAAA-CT-CTTATCTTTCTTGTCTGCCGTATAGTTACCACCC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TTC-TGTCTGACGTATGGTTACCACCC
* * * * *
1260250 TGGTCAAATCTGCCTCTC-TCCTATT
64 TGGTCAGAT-T-CTTTTCATTCGATT
* * * * * * * * *
1260275 TGATGTATGGTTACTACCTTGGTCAGAT-T-CTTTTCATT-TCGATTTGATGTATGGTTACCACT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TTCT-G-TCTGACGTATGGTTACCACC
* * * ** *
1260337 ATAGTCA-AATCTGCCTCCTTC--TT
63 CTGGTCAGATTCT-TTTCATTCGATT
* * ** * *
1260360 GTCGACATATGGTTACCACCATTATCAAATCTG-CTGC-CTTCTTGTCTGATGTATGCTTACCAC
1 -T-GACGTATGGTTACCACCCTGGTCAAATCTGCCT-CTCTTC-TGTCTGACGTATGGTTACCAC
* *
1260423 CCTAGTCAGATTCTTTTCATTCCTATT
62 CCTGGTCAGATTCTTTTCATT-CGATT
* * * * * * *
1260450 TAACGTAAGGTTGCCACCTTGGTTC-AATTTACCTCT-TTCCTG-CTTGATGTATGGTTACCACC
1 TGACGTATGGTTACCACCCTGG-TCAAATCTGCCTCTCTT-CTGTC-TGACGTATGGTTACCACC
*
1260512 CTTGGTCATATTCTTTTCATTTCGATT
63 C-TGGTCAGATTCTTTTCA-TTCGATT
* * * * * * * * *
1260539 CGATGTACGGTTACCATCCTAGTCAAATATGCCTCT-TTCTTATCTGACATAT-GTTACCACTC-
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTC-TGTCTGACGTATGGTTACCACCCT
* *
1260601 GGTCAAATTCTTTTTTC-TTTGATT
65 GGTCAGATTC--TTTTCATTCGATT
** * * * *
1260625 TGACGTATGGTTATAACCTTGGTCAAATCTACCTCTC-TCTTGTCTGACGTATGGTTATCACCTT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTC-TGTCTGACGTATGGTTACCACCCT
* * * *
1260689 AGTTAAATCTACCTCTCTC-TT-G-TT
65 GGTCAGAT-T--CT-TTTCATTCGATT
* * * * *
1260713 TGACGTACGGTTACCACCCTAGTCAAAT-T-CTTTTCATT-TCGATTTGA-GTTATGGTTACCAC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TTCT-G-TCTGACG-TATGGTTACCAC
* * * * * * *
1260774 CCTTGTCAAATCTGCCTCTCTTTTG-TG
62 CCTGGTCAGAT-T-CTTTTCATTCGATT
* * * * * ** * * *
1260801 TGACGCATGGTTACCACCCTGGTTAGAT-T-CTTTTCATTTCAATTTGACTTATGGTTACCATCC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTC--TTCTGTCTGACGTATGGTTACCACCC
* * * *
1260864 TAGTCAAACTCTTATT-TTTC--TT
64 TGGTCAGATTCTT-TTCATTCGATT
*** * * * * * * * *
1260886 GCCTGACGTATAACTACCACCTTGGTCAAATTTGCTTCTATTTTGTGTGACATATGGTTACTACC
1 ---TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACC
* * * *
1260951 TTGGTCATATTTTTTTTATTTCGATT
63 CTGGTCAGATTCTTTTCA-TTCGATT
* * * * *
1260977 TGACATATGGTTACCACACTGGTCAAATTTGGCTCTCTTCCGTCTGACGTATGGTTACCACCCTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
* *
1261042 GTCAGATTCTTTTTATTTCAATT
66 GTCAGATTCTTTTCA-TTCGATT
** * * * * * * * **
1261065 TGGTGTATGGTTATCACCCTGGTCAAATCTACTTCTCTCCTGTGTGATGAATGGTGGCCACCCTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
* *
1261130 GTCAGAATCTTTTCATTCCAATT
66 GTCAGATTCTTTTCATT-CGATT
* * *
1261153 TCACATATGGTTACCACCCTAGTCAAATC
1 TGACGTATGGTTACCACCCTGGTCAAATC
1261182 CACCACCTTC
Statistics
Matches: 2827, Mismatches: 754, Indels: 430
0.70 0.19 0.11
Matches are distributed among these distances:
83 7 0.00
84 7 0.00
85 93 0.03
86 273 0.10
87 452 0.16
88 1810 0.64
89 135 0.05
90 38 0.01
91 9 0.00
92 3 0.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (87 bp):
TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTTCTGTCTGACGTATGGTTACCACCCTG
GTCAGATTCTTTTCATTCGATT
Found at i:1260036 original size:129 final size:130
Alignment explanation
Indices: 1259804--1260041 Score: 311
Period size: 129 Copynumber: 1.8 Consensus size: 130
1259794 TTGAGGTAAG
* * * * *
1259804 GTTACCACCCTAGTCAAATCTACCTCTTTCCTGTCTGATATAAGGTTACCAGCCTGGTTAGTTCT
1 GTTACCACCATAGTCAAATCTACCTCCTTACTATCTGATATAAGGTTACCAGCCTGGTTAATTCT
* * * * *
1259869 TTTCATTTTGATTTGACGTATGTCTACCACCCTGGTCAAATCTGTATCCTTCCCGTCAACAAATA
66 TTGCATTCTGATTTAACGTATGTCTACAACCCTAGTCAAATCTGTATCCTTCCCGTCAACAAATA
* * * *
1259934 GTTACCACCATAGTCAATTCTACC-CCTTACTATCTGATGTATGGTTACTA-CCTGGTTAAATTC
1 GTTACCACCATAGTCAAATCTACCTCCTTACTATCTGATATAAGGTTACCAGCCTGGTT-AATTC
1259997 TTTGCATTCTGATTTAACGTATGAT-TACAACCCTAGTCAAATCTG
65 TTTGCATTCTGATTTAACGTATG-TCTACAACCCTAGTCAAATCTG
1260042 CCTCCTTTAT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
128 7 0.08
129 62 0.67
130 23 0.25
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (130 bp):
GTTACCACCATAGTCAAATCTACCTCCTTACTATCTGATATAAGGTTACCAGCCTGGTTAATTCT
TTGCATTCTGATTTAACGTATGTCTACAACCCTAGTCAAATCTGTATCCTTCCCGTCAACAAATA
Found at i:1260388 original size:43 final size:44
Alignment explanation
Indices: 1260324--1260430 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 44
1260314 CGATTTGATG
*
1260324 TATGGTTACCACTATAGTCAAATCTGCCT-CCTTCTTGTC-GACA
1 TATGGTTACCACCATAGTCAAATCTG-CTGCCTTCTTGTCTGACA
**
1260367 TATGGTTACCACCATTA-TCAAATCTGCTGCCTTCTTGTCTGATG
1 TATGGTTACCACCA-TAGTCAAATCTGCTGCCTTCTTGTCTGACA
* *
1260411 TATGCTTACCACCCTAGTCA
1 TATGGTTACCACCATAGTCA
1260431 GATTCTTTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
42 2 0.04
43 34 0.62
44 19 0.35
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (44 bp):
TATGGTTACCACCATAGTCAAATCTGCTGCCTTCTTGTCTGACA
Found at i:1260855 original size:44 final size:44
Alignment explanation
Indices: 1258659--1261180 Score: 199
Period size: 44 Copynumber: 57.5 Consensus size: 44
1258649 CTTGTCTGAT
* ** **
1258659 GTATGGTTACCACCCTGGTCAGGTTCTTTTCATTTTGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * **
1258703 GTATGGTTATCACCCTAGTCAAA-TCTATCTC-TCTCCTGTTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCAT-TTCAATTTGAC
* *
1258747 GTACGGTTACCACCCTAGTCAAATTCTTTTCATTTCGATTTGA-
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * * * * *
1258790 GTTATGGTTACTACCCTAATTAAATCTACCTGTC-TCTT--GTTTGAT
1 G-TATGGTTACCACCCTAGTCAAAT-T-CTTTTCAT-TTCAATTTGAC
* * * * *
1258835 GTATGGTTACCACCCTGGTTAGATTCCTTTCATTTCGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * * * * *
1258879 TTTTGGTTACCATCTTGGTCAAACTCTTATT--TTTC-TTGTCTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTT-TTCATTTCAAT-T-TGAC
* * * * * * *
1258923 ATATAGG-TACCACCCTGGTGAAATT-TGCTTCTACTTT--GTGTGAT
1 GTAT-GGTTACCACCCTAGTCAAATTCT-TTTC-A-TTTCAATTTGAC
* * * ** *
1258967 GTATGGTTACCACCCTAGTCAAATATGCCTCTC--TCCTGTCTGAC
1 GTATGGTTACCACCCTAGTCAAAT-T-CTTTTCATTTCAATTTGAC
* * * * * *
1259011 TTATGGTTACCACCTTGGTCAGATTCTAATT-ATTTCGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTTCAATTTGAC
* * * * * * * * * *
1259055 -TATGGTTATCGCTCTGGTCAAATCTACCTCTC-TCTT--GTCTAAT
1 GTATGGTTACCACCCTAGTCAAAT-T-CTTTTCAT-TTCAATTTGAC
* ** *
1259098 GTATGGTTACCACCCTAGTCAGATT-TTTTCATTTTGATTTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * * ** * ** *
1259141 GTATGGTTATCACCTTCGTTAAA-TCTACCTC-TCTCTGTGTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTTCAATTTGAC
* * ** * *
1259184 GTACGGTTACCA-CCTTGTCGGATTCTTTTCAATTT-GATTT-AA
1 GTATGGTTACCACCCTAGTCAAATTCTTTTC-ATTTCAATTTGAC
* * * **
1259226 GTTAGGGTTACCACCCTAGTCAAATCTACCTCTC-TTT-TGTTTGAC
1 G-TATGGTTACCACCCTAGTCAAAT-T-CTTTTCATTTCAATTTGAC
* * * * * *
1259271 GCATGGTTGCTACCCTGGT-AAGATTCTTTTCATTTCGATCTGAC
1 GTATGGTTACCACCCTAGTCAA-ATTCTTTTCATTTCAATTTGAC
* * * * *
1259315 TTATGGTTACCATCTTAGTCAAACTCTTATT--TTTC-TTGTCTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTT-TTCATTTCAAT-T-TGAC
* * * ** * * * *
1259359 ATATAGTTACCACCTTAGTTGACTT-TGCTTCTATTT-TATGTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTC-ATTTCAATTTGAC
* * * * * * *
1259403 ATATGGTTACTACCTTGGTCATATTCTTTTTATTTCGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * ** ** * *
1259447 GTATGGCTAGCACCCTGGTCAAA-TCTGCCTC-TCTTCTGTCTGAT
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCAT-TTCAATTTGAC
* * * *
1259491 GTATGGTTACCACTCTATTCAGAA-TCATTTT-ATTTCGATTTGAT
1 GTATGGTTACCACCCTAGTCA-AATTC-TTTTCATTTCAATTTGAC
* * ** * * *
1259535 GTATGGTTATCACCCTGGTCAAA-TCTACCTC-TCTC-CTGTGTGAT
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTTCAAT-T-TGAC
* * *
1259579 GTATAGTTACCACCCTTGTCAGAA-TCTTTTCATTTCGAA-TTGAT
1 GTATGGTTACCACCCTAGTCA-AATTCTTTTCATTTC-AATTTGAC
* * *** * * * *
1259623 GTA-GCGTTACCACCTTGGTC-AATTCGACCTC-TTTCCTATCTAAT
1 GTATG-GTTACCACCCTAGTCAAATTC-TTTTCATTT-CAATTTGAC
* * * * * *
1259667 GTATGGCTACCACCTTGGTCAGATTCTTTTTATTTCAATTTAAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * ** * **
1259711 ATATGGTTACCACCCTGGTCAAATTCGCTTCATTTTC-GTCCGATC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCA-TTTCAATTTGA-C
* * * ** *
1259756 -TATGGTTGCCACCCTAGTCAGATTCTTTTCATTCCTTTTTGAG
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* ** * *
1259799 GTAAGGTTACCACCCTAGTCAAA-TCTACCTC-TTTC-CTGTCTGAT
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTTCAAT-T-TGAC
* * * * * * **
1259843 ATAAGGTTACCAGCCTGGT-TAGTTCTTTTCATTTTGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * *** **
1259886 GTAT-GTCTACCACCCTGGTCAAA-TCTGTATC-CTTCCCGTCAAC
1 GTATGGT-TACCACCCTAGTCAAATTCT-TTTCATTTCAATTTGAC
** * * *** * * * * *
1259929 AAATAGTTACCACCATAGTC-AATTCTACCCCTTACTATCTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * * * *
1259972 GTATGGTTACTA-CCTGGTTAAATTCTTTGCA-TTCTGATTTAAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTC-AATTTGAC
* * ** *
1260015 GTATGATTACAACCCTAGTCAAA-TCTGCCTCCTTT--ATCTCTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTTCAAT-T-TGAC
* * * * *
1260059 GTACGGTTACCACCCTGGTCAGATTCTTTTCATTCCAATTTAAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * ** *
1260103 GTATGGTTACCACCCTGGTCAGGTCAGCCTTTTTC-TTGTC----TGAT
1 GTATGGTTACCACCCTAGTCA---AATTC-TTTTCATT-TCAATTTGAC
* * * * * *
1260147 GTATGGTTACCACCATGGTCAGATTCATTTCTTTTCGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * * * *
1260191 ATATGGTTACCATCCTAGTCAAACTCTTATC-TTTC-TTGTCTGCC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAAT-T-TGAC
* * ** * * *
1260235 GTATAGTTACCACCCTGGTCAAA-TCTGCCTC-TCTCCTATTTGAT
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCAT-TTCAATTTGAC
* * * * * *
1260279 GTATGGTTACTACCTTGGTCAGATTCTTTTCATTTCGATTTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
** ** *
1260323 GTATGGTTACCACTATAGTCAAA-TCTGCCTC-CTTC--TTGTCGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTTCAATT-T-GAC
* * * * * * *
1260366 ATATGGTTACCACCATTA-TCAAA-TCTGCTGC-CTTC-TTGTCTGAT
1 GTATGGTTACCACC-CTAGTCAAATTCT-TTTCATTTCAAT-T-TGAC
* * * * *
1260410 GTATGCTTACCACCCTAGTCAGATTCTTTTCATTCCTATTTAAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * * ** * *
1260454 GTAAGGTTGCCACCTTGGTTC-AATT-TACCTC-TTTC-CTGCTTGAT
1 GTATGGTTACCACCCTAG-TCAAATTCT-TTTCATTTCAAT--TTGAC
* * * * *
1260498 GTATGGTTACCACCCTTGGTCATATTCTTTTCATTTCGATTCGAT
1 GTATGGTTACCACCC-TAGTCAAATTCTTTTCATTTCAATTTGAC
* * *
1260543 GTACGGTTACCATCCTAGTCAAATATGCCTCTTTC--TT--ATCTGAC
1 GTATGGTTACCACCCTAGTCAAAT-T--CT-TTTCATTTCAATTTGAC
* * * *
1260587 ATAT-GTTACCACTC-GGTCAAATTCTTTTTTC-TTT-GATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTC--TTTTCATTTCAATTTGAC
** * * * * * *
1260629 GTATGGTTATAACCTTGGTCAAATCTACCTCTC-TCTT--GTCTGAC
1 GTATGGTTACCACCCTAGTCAAAT-T-CTTTTCAT-TTCAATTTGAC
* * * * * *
1260673 GTATGGTTATCACCTTAGTTAAATCTACCTCTC-TCTT--GTTTGAC
1 GTATGGTTACCACCCTAGTCAAAT-T-CTTTTCAT-TTCAATTTGAC
* *
1260717 GTACGGTTACCACCCTAGTCAAATTCTTTTCATTTCGATTTGA-
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * ** *
1260760 GTTATGGTTACCACCCTTGTCAAATCTGCCTCTC-TTT-TGTGTGAC
1 G-TATGGTTACCACCCTAGTCAAAT-T-CTTTTCATTTCAATTTGAC
* * * *
1260805 GCATGGTTACCACCCTGGTTAGATTCTTTTCATTTCAATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * *
1260849 TTATGGTTACCATCCTAGTCAAACTCTTATT--TTTC--TTGCCTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTT-TTCATTTCAATT---TGAC
*** * * * ** *
1260893 GTATAACTACCACCTTGGTCAAATT-TGCTTCTATTT-TGTGTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTC-ATTTCAATTTGAC
* * * * * * * *
1260937 ATATGGTTACTACCTTGGTCATATTTTTTTTATTTCGATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * ** ** *
1260981 ATATGGTTACCACACTGGTCAAATT-TGGCTC-TCTTCCGTCTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCAT-TTCAATTTGAC
* * * **
1261025 GTATGGTTACCACCCTGGTCAGATTCTTTTTATTTCAATTTGGT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
* * * * * *
1261069 GTATGGTTATCACCCTGGTCAAA-TCTACTTC-TCTC-CTGTGTGAT
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTTCAAT-T-TGAC
* ** * * *
1261113 GAATGGTGGCCACCCTGGTCAGAA-TCTTTTCATTCCAATTTCAC
1 GTATGGTTACCACCCTAGTCA-AATTCTTTTCATTTCAATTTGAC
*
1261157 ATATGGTTACCACCCTAGTCAAAT
1 GTATGGTTACCACCCTAGTCAAAT
1261181 CCACCACCTT
Statistics
Matches: 1754, Mismatches: 534, Indels: 380
0.66 0.20 0.14
Matches are distributed among these distances:
39 1 0.00
40 10 0.01
41 17 0.01
42 74 0.04
43 312 0.18
44 1159 0.66
45 122 0.07
46 38 0.02
47 11 0.01
48 10 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (44 bp):
GTATGGTTACCACCCTAGTCAAATTCTTTTCATTTCAATTTGAC
Found at i:1261036 original size:132 final size:132
Alignment explanation
Indices: 1260762--1261045 Score: 297
Period size: 132 Copynumber: 2.2 Consensus size: 132
1260752 CGATTTGAGT
* * *
1260762 TATGGTTACCACCCTT-GTCAAATCTGCCTCTCTTTTGTGTGACGCATGGTTACCACCCTGGTTA
1 TATGGTTACCA-CCTTGGTCAAATCTGCCTCTATTTTGTGTGACACATGGTTACCACCCTGGTCA
* ** *
1260826 GATTCTTTTCATTTCAATTTGACTTATGGTTACCATCCTAGTCAAACTCTTATTTTTCTTGCCTG
65 GATTCTTTTCATTTCAATTTGACATATGGTTACCATCCTAGTCAAACTCTTAGCTCTCTTGCCTG
1260891 ACG
130 ACG
*** * * * * * *
1260894 TATAACTACCACCTTGGTCAAATTTGCTTCTATTTTGTGTGACATATGGTTACTACCTTGGTCAT
1 TATGGTTACCACCTTGGTCAAATCTGCCTCTATTTTGTGTGACACATGGTTACCACCCTGGTCAG
* * * * * *
1260959 ATTTTTTTTATTTCGATTTGACATATGGTTACCA-CACTGGTCAAA-T-TTGGCTCTCTTCCGTC
66 ATTCTTTTCATTTCAATTTGACATATGGTTACCATC-CTAGTCAAACTCTTAGCTCTCTT--GCC
1261021 TGACG
128 TGACG
*
1261026 TATGGTTACCACCCTGGTCA
1 TATGGTTACCACCTTGGTCA
1261046 GATTCTTTTT
Statistics
Matches: 122, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
130 7 0.06
131 6 0.05
132 109 0.89
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (132 bp):
TATGGTTACCACCTTGGTCAAATCTGCCTCTATTTTGTGTGACACATGGTTACCACCCTGGTCAG
ATTCTTTTCATTTCAATTTGACATATGGTTACCATCCTAGTCAAACTCTTAGCTCTCTTGCCTGA
CG
Found at i:1261188 original size:18 final size:18
Alignment explanation
Indices: 1261165--1261211 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 18
1261155 ACATATGGTT
1261165 ACCACCCTAGTCAAATCC
1 ACCACCCTAGTCAAATCC
**
1261183 ACCA-CCT--TCCTATCC
1 ACCACCCTAGTCAAATCC
1261198 ACCACCCTAGTCAA
1 ACCACCCTAGTCAA
1261212 CCATATGGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 6
0.69 0.12 0.19
Matches are distributed among these distances:
15 10 0.45
16 3 0.14
17 3 0.14
18 6 0.27
ACGTcount: A:0.30, C:0.47, G:0.04, T:0.19
Consensus pattern (18 bp):
ACCACCCTAGTCAAATCC
Found at i:1261362 original size:44 final size:44
Alignment explanation
Indices: 1261314--1261421 Score: 153
Period size: 44 Copynumber: 2.5 Consensus size: 44
1261304 CTATTTCACG
* *
1261314 TAAGGTTACCACCCTGGTCAAATTTACCTCCTTCTTGTCTGACA
1 TAAGGTTACCACCCTGGTCAAATGTACCTCCTCCTTGTCTGACA
* * *
1261358 TAAGGTTACCACGCTGGTCAAATGTACCTCCTCCTTGTTTGACG
1 TAAGGTTACCACCCTGGTCAAATGTACCTCCTCCTTGTCTGACA
* *
1261402 TAAGGTTATCACCATGGTCA
1 TAAGGTTACCACCCTGGTCA
1261422 GATTCTTTTC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (44 bp):
TAAGGTTACCACCCTGGTCAAATGTACCTCCTCCTTGTCTGACA
Found at i:1261481 original size:132 final size:130
Alignment explanation
Indices: 1261289--1261750 Score: 398
Period size: 132 Copynumber: 3.5 Consensus size: 130
1261279 CACCCTAGTT
* * * * *
1261289 AGATTCTTTTCATTCCTATTTCACGTAAGGTTACCACCCTGGTCAAATTTACCTCCTTCTTGTCT
1 AGATTCTTTTCATT-CTATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTTTCTTGTCT
* *
1261354 GACATAAGGTTACCACGCTGGTCAAATGTACCTCCTCCTTGTTTGACGTAAGGTTATCACCATGG
65 GACATAAGGTTACTACGCTGGTCAAAT-TACCTCCTCCTTGTTTGACGTATGGTTA-CACCATGG
1261419 T-C
128 TCC
* * *
1261421 AGATTCTTTTCATTCTAATTTGGCGTATGGTTACCATCCTAGTCAAACTCTA-TTCTTTCTTGTC
1 AGATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCCTAGTCAAA-TCTACCTCTTTCTTGTC
* * * * * * *
1261485 TGACGTACGGTTACTA-GCTTGGTCGAATCATCCTCTCTCC-TATTTGGCGTATGGTTACTACCT
64 TGACATAAGGTTACTACGC-TGGTCAAATTA-CCTC-CTCCTTGTTTGACGTATGGTTAC-ACCA
1261548 TGGTCC
125 TGGTCC
* * * *
1261554 A-ATTATTTTCATTTTGATTTGATGTATGGTTACCACCCTAGTCAAATCTACCTCTTTCCTGTC-
1 AGATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTTTCTTGTCT
* ** * * * * * *
1261617 GACATATGGTTACTACAATGGTCAAATCTGCCTCCTTCTTGTCTGATGTATGGTTACCACCGTAG
65 GACATAAGGTTACTACGCTGGTCAAAT-TACCTCCTCCTTGTTTGACGTATGGTTA-CACCATGG
*
1261682 T-T
128 TCC
* * * * * * * * *
1261684 AGATTATTTTTATTTCTATTTGATGTACGGTTATCACCCTGGTGAAATCTACCTCTCTCCTGTCT
1 AGATTCTTTTCA-TTCTATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTTTCTTGTCT
1261749 GA
65 GA
1261751 TGTATGGTTA
Statistics
Matches: 268, Mismatches: 47, Indels: 30
0.78 0.14 0.09
Matches are distributed among these distances:
130 4 0.01
131 105 0.39
132 150 0.56
133 9 0.03
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (130 bp):
AGATTCTTTTCATTCTATTTGACGTATGGTTACCACCCTAGTCAAATCTACCTCTTTCTTGTCTG
ACATAAGGTTACTACGCTGGTCAAATTACCTCCTCCTTGTTTGACGTATGGTTACACCATGGTCC
Found at i:1261673 original size:44 final size:44
Alignment explanation
Indices: 1261573--1261676 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 44
1261563 CATTTTGATT
** *
1261573 TGATGTATGGTTACCACCCTAGTCAAATCTACCTCTTTCCTGTC
1 TGATGTATGGTTACCACAATAGTCAAATCTACCTCCTTCCTGTC
** * * * *
1261617 -GACATATGGTTACTACAATGGTCAAATCTGCCTCCTTCTTGTC
1 TGATGTATGGTTACCACAATAGTCAAATCTACCTCCTTCCTGTC
1261660 TGATGTATGGTTACCAC
1 TGATGTATGGTTACCAC
1261677 CGTAGTTAGA
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
43 34 0.72
44 13 0.28
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (44 bp):
TGATGTATGGTTACCACAATAGTCAAATCTACCTCCTTCCTGTC
Found at i:1261750 original size:88 final size:88
Alignment explanation
Indices: 1261635--1261872 Score: 263
Period size: 88 Copynumber: 2.7 Consensus size: 88
1261625 GTTACTACAA
* * *
1261635 TGGTCAAATCTGCCTC-CTTCTTGTCTGATGTATGGTTACCACCGTA-GTTAGATTATTTTT-AT
1 TGGTCAAATCAGCCTCTC-TCCTGTCTGATGTATGGTTACCACC-TAGGTCAGATT-TTTTTCAT
* * *
1261697 TTCTATTTGATGTACGGTTATCACCC
63 TCCAATTTGATGTACGGTTATAACCC
* *
1261723 TGGTGAAATCTA-CCTCTCTCCTGTCTGATGTATGGTTACCACCTAGGTCAGATTTTTTTCCTTC
1 TGGTCAAATC-AGCCTCTCTCCTGTCTGATGTATGGTTACCACCTAGGTCAGATTTTTTTCATTC
*
1261787 CAATTTGATGTACGGTTATAACCT
65 CAATTTGATGTACGGTTATAACCC
* ** * *
1261811 TGGTCAAATCAGCCTCTTTTTTGTCTAATGTATGGTTACCACC-ATGGTCAG-TTCTTTTCATT
1 TGGTCAAATCAGCCTCTCTCCTGTCTGATGTATGGTTACCACCTA-GGTCAGATTTTTTTCATT
1261873 TTGATTTGAC
Statistics
Matches: 128, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
87 18 0.14
88 109 0.85
89 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (88 bp):
TGGTCAAATCAGCCTCTCTCCTGTCTGATGTATGGTTACCACCTAGGTCAGATTTTTTTCATTCC
AATTTGATGTACGGTTATAACCC
Found at i:1262295 original size:20 final size:20
Alignment explanation
Indices: 1262281--1262370 Score: 88
Period size: 20 Copynumber: 4.8 Consensus size: 20
1262271 ATACATTTTG
1262281 CATTGTATCGATACATTGCT
1 CATTGTATCGATACATTGCT
1262301 CATTGTATCGAT--A-----
1 CATTGTATCGATACATTGCT
*
1262314 CATTGTATCGATATATTGCT
1 CATTGTATCGATACATTGCT
1262334 CATTGTATCGATACATTG-T
1 CATTGTATCGATACATTGCT
* *
1262353 AAAATGTATCGATACATT
1 -CATTGTATCGATACATT
1262371 CAGGCATTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
13 12 0.20
15 1 0.02
18 1 0.02
19 1 0.02
20 44 0.75
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (20 bp):
CATTGTATCGATACATTGCT
Found at i:1262317 original size:13 final size:13
Alignment explanation
Indices: 1262301--1262353 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
1262291 ATACATTGCT
1262301 CATTGTATCGATA
1 CATTGTATCGATA
1262314 CATTGTATCGATA
1 CATTGTATCGATA
*
1262327 TATTG---C--T-
1 CATTGTATCGATA
1262334 CATTGTATCGATA
1 CATTGTATCGATA
1262347 CATTGTA
1 CATTGTA
1262354 AAATGTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
7 4 0.12
8 1 0.03
10 2 0.06
12 1 0.03
13 24 0.75
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:1262323 original size:33 final size:33
Alignment explanation
Indices: 1262281--1262353 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
1262271 ATACATTTTG
1262281 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
*
1262314 CATTGTATCGATATATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
1262347 CATTGTA
1 CATTGTA
1262354 AAATGTATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATCGATA
Found at i:1264767 original size:51 final size:51
Alignment explanation
Indices: 1264656--1264826 Score: 146
Period size: 51 Copynumber: 3.4 Consensus size: 51
1264646 ATTTTTCATC
* * * * * ** **
1264656 TCGGGAATACTCCAATCCCAGTTTCATTTCCAAAACATTAATTTTTCTTAA
1 TCGGGGATACTTCAACCCCAATTTTATTTCCAAAACACCAATTTTTCACAA
* ** ** * * *
1264707 TAGAAGATACTTCAACCCCGGTTTTATTTCTAAAACACCCATTTTTCATAA
1 TCGGGGATACTTCAACCCCAATTTTATTTCCAAAACACCAATTTTTCACAA
* *
1264758 TCGGGGATAC-TCTAACTCCAATTTTATTTCCAAAATACCAATTTTTCACAA
1 TCGGGGATACTTC-AACCCCAATTTTATTTCCAAAACACCAATTTTTCACAA
*
1264809 TCGGGGATACTCCAACCC
1 TCGGGGATACTTCAACCC
1264827 TGTTATTTTA
Statistics
Matches: 93, Mismatches: 25, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
50 2 0.02
51 90 0.97
52 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.09, T:0.34
Consensus pattern (51 bp):
TCGGGGATACTTCAACCCCAATTTTATTTCCAAAACACCAATTTTTCACAA
Found at i:1264870 original size:28 final size:27
Alignment explanation
Indices: 1264811--1264884 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 27
1264801 TTTCACAATC
*
1264811 GGGGATACTCCAACCCTGTTATTTTATT
1 GGGGATACTCCAACCCCGTTATTTTA-T
1264839 GGGGATACTCCAACCCCGTTATTTCTGA-
1 GGGGATACTCCAACCCCGTTATTT-T-AT
*
1264867 GGGGATACTCTAACCCCG
1 GGGGATACTCCAACCCCG
1264885 GTTTTATTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 40 0.95
29 1 0.02
30 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTATTTTAT
Done.