Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1546936
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 12 of 13
Found at i:1392880 original size:160 final size:161
Alignment explanation
Indices: 1392712--1393050 Score: 364
Period size: 160 Copynumber: 2.1 Consensus size: 161
1392702 ACCAAACCCT
* ** *
1392712 CTAATTGGTTGACTTTA-TCAATTTTGCCCTAGTCAA-CCTCTCAAACCTATTGGCTTTATGTAT
1 CTAATTGGTTGACTTTATTCAATTTTACCCTAGTCAACCCT-TCAAACCTATTGGCTTTATACAC
* * * * *
1392775 TTTGCCTTAGGC-ATCCCCTTAAATTGGTTGACTTTATCGATTTTGCCTTAGTCAACCCCTT-AA
65 TTTACCCTA-GCTA-ACCCTTAAATTGGTTGACTTTATCGATTTCGCCTTACTCAA-CCCTTCAA
* * ** * *
1392838 ACCTATTGGTTTTATTGATTTTGCCCTAGCAAATC
127 ACCTATAGGCTTTATCAACTTTGCCCTAGCAAACC
*** * * *
1392873 C-AATTGGTTGACTTTATTTGGTTTTACCCTAGTCAACCCTTCTAACTTGTTGGCTTTATACACT
1 CTAATTGGTTGACTTTATTCAATTTTACCCTAGTCAACCCTTCAAACCTATTGGCTTTATACACT
* **
1392937 TTACCCTAGCTAACCCTTTAATTGGTTGACTTTATCGATTTCGTTTTACTCAACCCTTCAAACCT
66 TTACCCTAGCTAACCCTTAAATTGGTTGACTTTATCGATTTCGCCTTACTCAACCCTTCAAACCT
*
1393002 ATAGGCTTTATCAACTTTGCCCTCGCAAACC
131 ATAGGCTTTATCAACTTTGCCCTAGCAAACC
1393033 CTTAAATTGGTTGACTTT
1 C-T-AATTGGTTGACTTT
1393051 TTTGGTTTTA
Statistics
Matches: 146, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
159 5 0.03
160 83 0.57
161 41 0.28
162 3 0.02
163 14 0.10
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (161 bp):
CTAATTGGTTGACTTTATTCAATTTTACCCTAGTCAACCCTTCAAACCTATTGGCTTTATACACT
TTACCCTAGCTAACCCTTAAATTGGTTGACTTTATCGATTTCGCCTTACTCAACCCTTCAAACCT
ATAGGCTTTATCAACTTTGCCCTAGCAAACC
Found at i:1392941 original size:41 final size:40
Alignment explanation
Indices: 1392895--1392971 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
1392885 TTTATTTGGT
*
1392895 TTTACCCTAG-TCAACCCTTCTAACTT-GTTGGCTTTATACAC
1 TTTACCCTAGCT-AACCCTT-TAA-TTGGTTGACTTTATACAC
1392936 TTTACCCTAGCTAACCCTTTAATTGGTTGACTTTAT
1 TTTACCCTAGCTAACCCTTTAATTGGTTGACTTTAT
1392972 CGATTTCGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
39 2 0.06
40 13 0.39
41 17 0.52
42 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.10, T:0.42
Consensus pattern (40 bp):
TTTACCCTAGCTAACCCTTTAATTGGTTGACTTTATACAC
Found at i:1393072 original size:81 final size:79
Alignment explanation
Indices: 1392632--1393050 Score: 335
Period size: 82 Copynumber: 5.2 Consensus size: 79
1392622 GCCCACCCCT
* * * * * * ***
1392632 TTAATTGGTTGACTTTATTGGTTTTACGTTGGTCAA-CCTTCAAAACTATTGGCTTAATTGGTTT
1 TTAATTGGTTGACTTTATCGATTTTACCTTAGTCAACCCTTCAAACCTATTGGCTTTATAACTTT
* *
1392696 ACCCTAACCAAACCC
66 GCCCT-AGCAAACCC
* * * * *
1392711 TCTAATTGGTTGACTTTATCAATTTTGCCCTAGTCAA-CCTCTCAAACCTATTGGCTTTATGTAT
1 T-TAATTGGTTGACTTTATCGATTTTACCTTAGTCAACCCT-TCAAACCTATTGGCTTTAT-AAC
* **
1392775 TTTGCCTTAGGCATCCCC
63 TTTGCCCTA-GCAAACCC
* * * *
1392793 TTAAATTGGTTGACTTTATCGATTTTGCCTTAGTCAACCCCTT-AAACCTATTGGTTTTATTGAT
1 TT-AATTGGTTGACTTTATCGATTTTACCTTAGTCAA-CCCTTCAAACCTATTGGCTTTA-TAAC
*
1392857 TTTGCCCTAGCAAATCC
63 TTTGCCCTAGCAAACCC
* * * * * *
1392874 --AATTGGTTGACTTTATTTGGTTTTACCCTAGTCAACCCTTCTAACTTGTTGGCTTTATACACT
1 TTAATTGGTTGACTTTA-TCGATTTTACCTTAGTCAACCCTTCAAACCTATTGGCTTTATA-ACT
* *
1392937 TTACCCTAGCTAACCC
64 TTGCCCTAGCAAACCC
**** * *
1392953 TTTAATTGGTTGACTTTATCGATTTCGTTTTACTCAACCCTTCAAACCTATAGGCTTTATCAACT
1 -TTAATTGGTTGACTTTATCGATTTTACCTTAGTCAACCCTTCAAACCTATTGGCTTTAT-AACT
*
1393018 TTGCCCTCGCAAACCC
64 TTGCCCTAGCAAACCC
1393034 TTAAATTGGTTGACTTT
1 TT-AATTGGTTGACTTT
1393051 TTTGGTTTTA
Statistics
Matches: 272, Mismatches: 52, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
78 21 0.08
79 43 0.16
80 33 0.12
81 84 0.31
82 86 0.32
83 2 0.01
84 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (79 bp):
TTAATTGGTTGACTTTATCGATTTTACCTTAGTCAACCCTTCAAACCTATTGGCTTTATAACTTT
GCCCTAGCAAACCC
Found at i:1393079 original size:81 final size:79
Alignment explanation
Indices: 1392628--1393079 Score: 327
Period size: 81 Copynumber: 5.6 Consensus size: 79
1392618 CCTTGCCCAC
* * * * * * * * ***
1392628 CCCTTTAATTGGTTGACTTTATTGGTTTTACGTTGGTCAACCTTCAAAACTATTGGCTTAATTGG
1 CCCTTAAATTGGTTGACTTTATCGATTTTACCTTAGTCAACCCTCAAACCTATTGGCTTTATAAC
* *
1392693 TTTACCCTAACCAAA
66 TTTGCCCT-AGCAAA
* * *
1392708 CCCTCT-AATTGGTTGACTTTATCAATTTTGCCCTAGTCAACCTCTCAAACCTATTGGCTTTATG
1 CCCT-TAAATTGGTTGACTTTATCGATTTTACCTTAGTCAACC-CTCAAACCTATTGGCTTTAT-
* * * **
1392772 TATTTTGCCTTAGGCATC
63 AACTTTGCCCTA-GCAAA
* * * *
1392790 CCCTTAAATTGGTTGACTTTATCGATTTTGCCTTAGTCAACCCCTTAAACCTATTGGTTTTATTG
1 CCCTTAAATTGGTTGACTTTATCGATTTTACCTTAGTCAA-CCCTCAAACCTATTGGCTTTA-TA
*
1392855 ATTTTGCCCTAGCAAA
64 ACTTTGCCCTAGCAAA
* * * * * * *
1392871 TCC---AATTGGTTGACTTTATTTGGTTTTACCCTAGTCAACCCTTCTAACTTGTTGGCTTTATA
1 CCCTTAAATTGGTTGACTTTA-TCGATTTTACCTTAGTCAACCC-TCAAACCTATTGGCTTTATA
* *
1392933 CACTTTACCCTAGCTAA
64 -ACTTTGCCCTAGCAAA
* **** * *
1392950 CCCTTTAATTGGTTGACTTTATCGATTTCGTTTTACTCAACCCTTCAAACCTATAGGCTTTATCA
1 CCCTTAAATTGGTTGACTTTATCGATTTTACCTTAGTCAACCC-TCAAACCTATTGGCTTTAT-A
*
1393015 ACTTTGCCCTCGCAAA
64 ACTTTGCCCTAGCAAA
* * * * *
1393031 CCCTTAAATTGGTTGACTTTTTTGGTTTTATCTTGGTCAACCACTCAAA
1 CCCTTAAATTGGTTGACTTTATCGATTTTACCTTAGTCAACC-CTCAAA
1393080 TTGTTGGCTT
Statistics
Matches: 293, Mismatches: 64, Indels: 29
0.76 0.17 0.08
Matches are distributed among these distances:
78 19 0.06
79 43 0.15
80 33 0.11
81 106 0.36
82 89 0.30
83 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (79 bp):
CCCTTAAATTGGTTGACTTTATCGATTTTACCTTAGTCAACCCTCAAACCTATTGGCTTTATAAC
TTTGCCCTAGCAAA
Found at i:1393878 original size:13 final size:13
Alignment explanation
Indices: 1393860--1393951 Score: 58
Period size: 13 Copynumber: 6.0 Consensus size: 13
1393850 CAATTTTTTA
1393860 TGTATCGATACAT
1 TGTATCGATACAT
1393873 TGTATCGATACAATTTTTT
1 TGTATCGATAC-A-----T
1393892 ATGTATCGATACAT
1 -TGTATCGATACAT
1393906 TGTATCGATACAATTTTTT
1 TGTATCGATAC-A-----T
1393925 ATGTATCGATACAT
1 -TGTATCGATACAT
1393939 TGTATCGATACAT
1 TGTATCGATACAT
1393952 ACTTTGTGTA
Statistics
Matches: 65, Mismatches: 0, Indels: 28
0.70 0.00 0.30
Matches are distributed among these distances:
13 35 0.54
14 4 0.06
19 4 0.06
20 22 0.34
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1393884 original size:33 final size:33
Alignment explanation
Indices: 1393840--1393967 Score: 213
Period size: 33 Copynumber: 3.9 Consensus size: 33
1393830 TACAAGCCAA
*
1393840 TGTATCCATACAATTTTTTATGTATCGATACAT
1 TGTATCGATACAATTTTTTATGTATCGATACAT
1393873 TGTATCGATACAATTTTTTATGTATCGATACAT
1 TGTATCGATACAATTTTTTATGTATCGATACAT
1393906 TGTATCGATACAATTTTTTATGTATCGATACAT
1 TGTATCGATACAATTTTTTATGTATCGATACAT
** *
1393939 TGTATCGATAC-ATACTTTGTGTATCGATA
1 TGTATCGATACAATTTTTTATGTATCGATA
1393968 AAAGTTTGGC
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
32 15 0.16
33 76 0.84
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (33 bp):
TGTATCGATACAATTTTTTATGTATCGATACAT
Found at i:1393898 original size:20 final size:20
Alignment explanation
Indices: 1393839--1393937 Score: 91
Period size: 20 Copynumber: 5.7 Consensus size: 20
1393829 TTACAAGCCA
*
1393839 ATGTATCCATACAATTTTTT
1 ATGTATCGATACAATTTTTT
1393859 ATGTATCGATAC-A-----T
1 ATGTATCGATACAATTTTTT
1393873 -TGTATCGATACAATTTTTT
1 ATGTATCGATACAATTTTTT
1393892 ATGTATCGATAC-A-----T
1 ATGTATCGATACAATTTTTT
1393906 -TGTATCGATACAATTTTTT
1 ATGTATCGATACAATTTTTT
1393925 ATGTATCGATACA
1 ATGTATCGATACA
1393938 TTGTATCGAT
Statistics
Matches: 64, Mismatches: 1, Indels: 28
0.69 0.01 0.30
Matches are distributed among these distances:
13 22 0.34
14 4 0.06
19 4 0.06
20 34 0.53
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACAATTTTTT
Found at i:1402702 original size:20 final size:20
Alignment explanation
Indices: 1402677--1402728 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
1402667 TACAAGCCAA
**
1402677 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
1402697 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
1402716 TGTATCGATACAA
1 TGTATCGATACAA
1402729 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:1403120 original size:41 final size:41
Alignment explanation
Indices: 1403092--1403248 Score: 183
Period size: 41 Copynumber: 3.9 Consensus size: 41
1403082 TTGGCTAACT
* * * * *
1403092 CTTCTAATTGGTTGACTTTATTAGTTTTGCCTTGGTCAACC
1 CTTCTAATTGGTTAACTTTATTAGTTTTGCCCTAGCCAATC
* * ** *
1403133 CTT-TAACCT-ATTAGTTTTATTAATTTTGCCCTAGCCAATC
1 CTTCTAA-TTGGTTAACTTTATTAGTTTTGCCCTAGCCAATC
*
1403173 CTTCTAATTGGTTAACTTTATTGGTTTTGCCCTAGCCAATC
1 CTTCTAATTGGTTAACTTTATTAGTTTTGCCCTAGCCAATC
*
1403214 CTTCTAATTGGTTAACTTTATTGGTTTTGCCCTAG
1 CTTCTAATTGGTTAACTTTATTAGTTTTGCCCTAG
1403249 TCAACCCCTC
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 29 0.30
41 68 0.70
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (41 bp):
CTTCTAATTGGTTAACTTTATTAGTTTTGCCCTAGCCAATC
Found at i:1403274 original size:41 final size:41
Alignment explanation
Indices: 1403106--1403275 Score: 130
Period size: 41 Copynumber: 4.2 Consensus size: 41
1403096 TAATTGGTTG
* * * *
1403106 ACTTTATTAGTTTTGCCTTGGTCAA-CCCTTTAACCT-ATTA
1 ACTTTATTAGTTTTGCCCTAGCCAATCCCTCTAA-CTGATTA
** * * * *
1403146 GTTTTATTAATTTTGCCCTAGCCAATCCTTCTAATTGGTTA
1 ACTTTATTAGTTTTGCCCTAGCCAATCCCTCTAACTGATTA
* * * *
1403187 ACTTTATTGGTTTTGCCCTAGCCAATCCTTCTAATTGGTTA
1 ACTTTATTAGTTTTGCCCTAGCCAATCCCTCTAACTGATTA
* * * *
1403228 ACTTTATTGGTTTTGCCCTAGTCAACCCCTCAAACCT-ATTA
1 ACTTTATTAGTTTTGCCCTAGCCAATCCCTCTAA-CTGATTA
*
1403269 GCTTTAT
1 ACTTTAT
1403276 CGATTTTTTT
Statistics
Matches: 106, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
40 20 0.19
41 85 0.80
42 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.44
Consensus pattern (41 bp):
ACTTTATTAGTTTTGCCCTAGCCAATCCCTCTAACTGATTA
Found at i:1403274 original size:82 final size:82
Alignment explanation
Indices: 1403196--1403702 Score: 411
Period size: 82 Copynumber: 6.2 Consensus size: 82
1403186 AACTTTATTG
* * * *
1403196 GTTTTGCCCTAGCCAATCCTTCTAATTGGTTAACTTTATTGGTTTTGCCCTAGTCAACCCCTCAA
1 GTTTTGCCCTAGCCAACCCTTCTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCTCAA
* *
1403261 ACCTATTAGCTTTATC-
66 ACCTGTTGGCTTTATCA
*** * * * * * *
1403277 GATTTT-TTTTGGCTAACCCATCTAATTGGTTGACTTTA-TCGATTTTGCCTTAGTCAACCCCTC
1 G-TTTTGCCCTAGCCAACCCTTCTAATTGGTTGACTTTATTAG-TTTTGCCCTGGTCAACCCCTC
** *
1403340 AAATTTGTTGGCTTTAGCA
64 AAACCTGTTGGCTTTATCA
* * * *
1403359 GTTTTGCCCTAGCCAACCCCTCTAATTGGTTGAATTTATTAGTTTTGCCCTGGTCAACCACTTAA
1 GTTTTGCCCTAGCCAACCCTTCTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCTCAA
*
1403424 ACCTGCTGGCTTTATCTA
66 ACCTGTTGGCTTTATC-A
* * ** * * * * * ** * * *
1403442 -TTTTGCTCTAACCAATTCTTTTAGTTCGTTGACTTTATCAATTTTGCGTTGGTTAA-CCTTGAA
1 GTTTTGCCCTAGCCAACCCTTCTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCTCAA
** *
1403505 ATATGTTGGCTTTATTTA
66 ACCTGTTGGCTTTA-TCA
* * * * * **
1403523 -TTCTGCCTTAGCCAA-CCTCTCTAATTTGTTGACTTTATTGGTTTCGTACTGGTCAACCCC-CT
1 GTTTTGCCCTAGCCAACCCT-TCTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCTC-
*
1403585 AAACCTGTTGGCTTGATCA
64 AAACCTGTTGGCTTTATCA
* * *
1403604 GTTTTGCCCTAGCTAACCCCTT-AAATTGGTTGACTTTATTAGTTTTACCCTGGTCAACCCCTCA
1 GTTTTGCCCTAGCCAA-CCCTTCTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCTCA
*
1403668 AACCTGTTGGTTTTATCA
65 AACCTGTTGGCTTTATCA
*
1403686 GTTTTACCCTAGCCAAC
1 GTTTTGCCCTAGCCAAC
1403703 TCCTCTCAAA
Statistics
Matches: 324, Mismatches: 88, Indels: 28
0.74 0.20 0.06
Matches are distributed among these distances:
80 4 0.01
81 118 0.36
82 194 0.60
83 5 0.02
84 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (82 bp):
GTTTTGCCCTAGCCAACCCTTCTAATTGGTTGACTTTATTAGTTTTGCCCTGGTCAACCCCTCAA
ACCTGTTGGCTTTATCA
Found at i:1403301 original size:122 final size:123
Alignment explanation
Indices: 1403092--1403380 Score: 303
Period size: 122 Copynumber: 2.4 Consensus size: 123
1403082 TTGGCTAACT
* * ** * *
1403092 CTTCTAATTGGTTGACTTTATTAGTTTTGCCTTGGTCAA-CCCTTTAACCTATTAGTTTTATTAA
1 CTTCTAATTGGTTGACTTTATTAGTTTTGCCCTAGTCAACCCCTCAAACCTATTAGCTTTATCAA
* * * * *
1403156 TTTTGCCCTAGCCAATCCTTCTAATTGGTTAACTTTATTGGTTTTGCCCTAGCCAATC
66 TTTTGCCCTAGCCAACCCATCTAATTGGTTAACTTTATCGATTTTGCCCTAGCCAACC
* * *
1403214 CTTCTAATTGGTTAACTTTATTGGTTTTGCCCTAGTCAACCCCTCAAACCTATTAGCTTTATCGA
1 CTTCTAATTGGTTGACTTTATTAGTTTTGCCCTAGTCAACCCCTCAAACCTATTAGCTTTATCAA
*** * * * * *
1403279 TTTT-TTTTGGCTAACCCATCTAATTGGTTGACTTTATCGATTTTGCCTTAGTCAACC
66 TTTTGCCCTAGCCAACCCATCTAATTGGTTAACTTTATCGATTTTGCCCTAGCCAACC
* * * * ** *
1403336 CCTCAAATTTGTTGGCTTTAGCAGTTTTGCCCTAGCCAACCCCTC
1 CTTCTAATTGGTTGACTTTATTAGTTTTGCCCTAGTCAACCCCTC
1403381 TAATTGGTTG
Statistics
Matches: 135, Mismatches: 31, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
122 111 0.82
123 24 0.18
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.42
Consensus pattern (123 bp):
CTTCTAATTGGTTGACTTTATTAGTTTTGCCCTAGTCAACCCCTCAAACCTATTAGCTTTATCAA
TTTTGCCCTAGCCAACCCATCTAATTGGTTAACTTTATCGATTTTGCCCTAGCCAACC
Found at i:1403355 original size:41 final size:41
Alignment explanation
Indices: 1403155--1403821 Score: 177
Period size: 41 Copynumber: 16.3 Consensus size: 41
1403145 AGTTTTATTA
* * * * * ** *
1403155 ATTTTGCCCTAGCCAATCCTTCTAATTGGTTAACTTTATTG
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* * * * * * ** *
1403196 GTTTTGCCCTAGCCAATCCTTCTAATTGGTTAACTTTATTG
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* ** * *
1403237 GTTTTGCCCTAGTCAACCCCTCAAACCTATTAGCTTTATCG
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
** * * * * * *
1403278 ATTTT--TTTTGGCTAACCCATCTAATTGGTTGACTTTATCG
1 ATTTTGCCCTAGTC-AACCCCTCAAATTTGTTGGCTTTATCG
* *
1403318 ATTTTGCCTTAGTCAACCCCTCAAATTTGTTGGCTTTAGC-
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* * * ** *
1403358 AGTTTTGCCCTAGCCAACCCCTCTAATTGGTTGAATTTAT-T
1 A-TTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* * * ** * *
1403399 AGTTTTGCCCTGGTCAACCACTTAAACCTGCTGGCTTTATCT
1 A-TTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* ** ** * ** * * * *
1403441 ATTTTGCTCTAACCAATTCTTTTAGTTCGTTGACTTTATCA
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
** * * * * * **
1403482 ATTTTGCGTTGGTTAA-CCTTGAAATATGTTGGCTTTATTT
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* * * * * * *
1403522 ATTCTGCCTTAGCCAACCTCTCTAATTTGTTGACTTTATTG
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* * ** * ** *
1403563 GTTTCGTACTGGTCAACCCC-CTAAACCTGTTGGCTTGATC-
1 ATTTTGCCCTAGTCAACCCCTC-AAATTTGTTGGCTTTATCG
* * * *
1403603 AGTTTTGCCCTAG-CTAACCCCTTAAATTGGTTGACTTTAT-T
1 A-TTTTGCCCTAGTC-AACCCCTCAAATTTGTTGGCTTTATCG
* * ** *
1403644 AGTTTTACCCTGGTCAACCCCTCAAACCTGTTGGTTTTATC-
1 A-TTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* * * * *
1403685 AGTTTTACCCTAGCCAACTCCTCTCAAATCTGTTGGCTCTATTG
1 A-TTTTGCCCTAGTCAAC-CC-CTCAAATTTGTTGGCTTTATCG
* * * * * * *
1403729 ATTTCGCCATGGCCAA-CCCTCTAACTTGTTGACTTTATCG
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* * * * * *
1403769 ATTTTACCTTAGTCAACCTCTTAAGTTTGTTGGCTTTATTG
1 ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
* *
1403810 GTTTTACCCTAG
1 ATTTTGCCCTAG
1403822 CCAATAGTCT
Statistics
Matches: 451, Mismatches: 157, Indels: 36
0.70 0.24 0.06
Matches are distributed among these distances:
39 3 0.01
40 80 0.18
41 330 0.73
42 9 0.02
43 28 0.06
44 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (41 bp):
ATTTTGCCCTAGTCAACCCCTCAAATTTGTTGGCTTTATCG
Found at i:1403385 original size:163 final size:161
Alignment explanation
Indices: 1403196--1403708 Score: 455
Period size: 163 Copynumber: 3.1 Consensus size: 161
1403186 AACTTTATTG
* * *
1403196 GTTTTGCCCTAGCCAATCCTTCTAATTGGTTAACTTTATTGGTTTTGCCCTAGTCAACCCCTCAA
1 GTTTTGCCCTAGCCAACCCCTCTAATTGGTTAACTTTATTGGTTTTGCCCTGGTCAACCCCTCAA
* * ** *
1403261 ACCTATTAGCTTTATCGATTTTTTTTGGCTAACCCATCTAATTGGTTGACTTTATCGATTTTGCC
66 ACCTGTTGGCTTTATC-ATTTTTCCT-GCTAACCCATCTAATTGGTTGACTTTATCAATTTTGCC
* * *
1403326 TTAGTCAACCCCTCAAATTTGTTGGCTTTAGCA
129 TTGGTCAACCCCTCAAATATGTTGGCTTTATCA
* * *
1403359 GTTTTGCCCTAGCCAACCCCTCTAATTGGTTGAA-TTTATTAGTTTTGCCCTGGTCAACCACTTA
1 GTTTTGCCCTAGCCAACCCCTCTAATTGGTT-AACTTTATTGGTTTTGCCCTGGTCAACCCCTCA
* * * * *
1403423 AACCTGCTGGCTTTATC-TATTTTGCT-CTAACCAATTCTTTTAGTTCGTTGACTTTATCAATTT
65 AACCTGTTGGCTTTATCAT-TTTTCCTGCTAACCCA-TC---TAATTGGTTGACTTTATCAATTT
* * * * *
1403486 TGCGTTGGTTAA-CCTTGAAATATGTTGGCTTTATTTA
125 TGCCTTGGTCAACCCCTCAAATATGTTGGCTTTA-TCA
* * * * * * **
1403523 -TTCTGCCTTAGCCAACCTCTCTAATTTGTTGACTTTATTGGTTTCGTACTGGTCAACCCC-CTA
1 GTTTTGCCCTAGCCAACCCCTCTAATTGGTTAACTTTATTGGTTTTGCCCTGGTCAACCCCTC-A
* * * * *
1403586 AACCTGTTGGCTTGATCAGTTTTGCCCTAGCTAACCCCT-TAAATTGGTTGACTTTATTAGTTTT
65 AACCTGTTGGCTTTATCA-TTTT-TCCT-GCTAACCCATCT-AATTGGTTGACTTTATCAATTTT
* * ** *
1403650 ACCCTGGTCAACCCCTCAAACCTGTTGGTTTTATCA
126 GCCTTGGTCAACCCCTCAAATATGTTGGCTTTATCA
* *
1403686 GTTTTACCCTAGCCAACTCCTCT
1 GTTTTGCCCTAGCCAACCCCTCT
1403709 CAAATCTGTT
Statistics
Matches: 274, Mismatches: 59, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
160 7 0.03
161 3 0.01
162 7 0.03
163 179 0.65
164 68 0.25
165 3 0.01
166 1 0.00
167 6 0.02
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (161 bp):
GTTTTGCCCTAGCCAACCCCTCTAATTGGTTAACTTTATTGGTTTTGCCCTGGTCAACCCCTCAA
ACCTGTTGGCTTTATCATTTTTCCTGCTAACCCATCTAATTGGTTGACTTTATCAATTTTGCCTT
GGTCAACCCCTCAAATATGTTGGCTTTATCA
Found at i:1408152 original size:52 final size:52
Alignment explanation
Indices: 1408067--1408191 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
1408057 ATATGAAAAG
* *
1408067 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGAGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGAGCAAAT
* *
1408119 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGAGCAAAT
1408171 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
1408192 AAGATCAATG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGAGCAAAT
Found at i:1408202 original size:52 final size:52
Alignment explanation
Indices: 1408067--1408211 Score: 195
Period size: 52 Copynumber: 2.8 Consensus size: 52
1408057 ATATGAAAAG
* * *
1408067 TTGCTTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGAGCAAAT
1 TTGCCTGCATGTATCGATACA-TAAGATAATGTATCGATACATCTGAGCAAAT
*** *
1408119 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGAGCAAAT
1408171 TTGCCTGCATGTATCGATACA-AAGATCAATGTATCGATACA
1 TTGCCTGCATGTATCGATACATAAGAT-AATGTATCGATACA
1408212 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
51 4 0.05
52 80 0.95
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGAGCAAAT
Found at i:1408215 original size:13 final size:13
Alignment explanation
Indices: 1408197--1408238 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
1408187 ATACAAAGAT
1408197 CAATGTATCGATA
1 CAATGTATCGATA
1408210 CAATGTATCGATA
1 CAATGTATCGATA
*
1408223 CATTGTATCGATA
1 CAATGTATCGATA
1408236 CAA
1 CAA
1408239 CATTTTATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1409153 original size:55 final size:52
Alignment explanation
Indices: 1409093--1409953 Score: 277
Period size: 49 Copynumber: 18.1 Consensus size: 52
1409083 CGATATTGGG
* * *
1409093 CTTAAAGATGAGAAAAAGGATGTCAAGGTGCTGATTCAAGGCCAGCTACATTGAA
1 CTTAAAGATG-G-AAAAGG-TGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* * *
1409148 CTTAAAGATGGAAAAGGTGCCAATATACTGATTCAAGGCCAGCTATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* *
1409200 C-T-----T---AAAGGTGCCAATG-TGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAA-GATACTGATTCAAGGCCAGCTACATTGAA
* * * * * * *
1409243 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCTAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* *
1409292 C-T-----T---AAAGGTGCCAATG-TGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAA-GATACTGATTCAAGGCCAGCTACATTGAA
* * * * * *
1409335 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* *
1409384 C-T-----T---AAAGGTGCCAATG-TGCTGATTGAAGGCCAGCTACATTGAA
1 CTTAAAGATGGAAAAGGTGCCAA-GATACTGATTCAAGGCCAGCTACATTGAA
* * *
1409427 CTTAAAGATGGAAAAGGTGCCAATATACTGATTCAAGGCCAGCTATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* *
1409479 C-T-----T---AAAGGTGCCAATG-TGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAA-GATACTGATTCAAGGCCAGCTACATTGAA
* * * * * *
1409522 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* * * * * * *
1409571 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGTCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* *
1409620 C-T-----T---AAAGGTGCCAATG-TGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAA-GATACTGATTCAAGGCCAGCTACATTGAA
* * ** * * * *
1409663 CTTAAAGAT-G--AAGATGCCAATATGTTGATTCAAGGCCAACGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* *
1409712 C-T-----T---AAAGGTGCCAATG-TGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAA-GATACTGATTCAAGGCCAGCTACATTGAA
* * * * * *
1409755 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* *
1409804 C-T-----T---AAAGGTGCCAATG-TGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAA-GATACTGATTCAAGGCCAGCTACATTGAA
* * * * * *
1409847 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
* ** * * * * * * *
1409896 CTTAAAGGT-GCCAATGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
1409947 CTTAAAG
1 CTTAAAG
1409954 GTGCCAATGT
Statistics
Matches: 659, Mismatches: 75, Indels: 148
0.75 0.09 0.17
Matches are distributed among these distances:
43 248 0.38
44 7 0.01
46 2 0.00
48 5 0.01
49 270 0.41
51 45 0.07
52 65 0.10
53 6 0.01
54 1 0.00
55 10 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
CTTAAAGATGGAAAAGGTGCCAAGATACTGATTCAAGGCCAGCTACATTGAA
Found at i:1409209 original size:43 final size:43
Alignment explanation
Indices: 1409160--1409987 Score: 828
Period size: 43 Copynumber: 17.9 Consensus size: 43
1409150 TAAAGATGGA
*
1409160 AAAGGTGCCAATATACTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409203 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409246 AAAGATGAAGATGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409295 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1409338 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
1409387 AAAGGTGCCAATGTGCTGATTGAAGGCCAGCTACATTGAACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
*
1409436 GGAAAAGGTGCCAATATACTGATTCAAGGCCAGCTATATTGGACTT
1 ---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409482 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1409525 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409574 AAAGATGAAGATGCCAATATGCTGATTCAAGGTCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409623 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
1409666 AAAGATGAAGATGCCAATATGTTGATTCAAGGCCAACGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409715 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1409758 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409807 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1409850 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409899 AAAGGTGCCAATGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT
1 AAA---G-----GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1409950 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
1409988 CGCTTAGAAG
Statistics
Matches: 675, Mismatches: 60, Indels: 100
0.81 0.07 0.12
Matches are distributed among these distances:
43 277 0.41
44 18 0.03
45 6 0.01
46 12 0.02
47 6 0.01
48 19 0.03
49 258 0.38
51 41 0.06
52 38 0.06
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:1409299 original size:92 final size:91
Alignment explanation
Indices: 1409120--1409987 Score: 992
Period size: 92 Copynumber: 9.3 Consensus size: 91
1409110 GGATGTCAAG
* *
1409120 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATACTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AA-GTGCCAATATGCTGATTCAAG
1409185 GCCAGCTATATTGGACTTAAAGGTGCCAAT
62 GCCAGCTATATTGGACTTAAAGGTGCCAAT
*
1409215 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAG-TGCCAATATGCTGATTCAAGGCC
*
1409280 AGCGATATTGGACTTAAAGGTGCCAAT
65 AGCTATATTGGACTTAAAGGTGCCAAT
1409307 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAG-TGCCAATATGCTGATTCAAGGCC
*
1409372 AGCGATATTGGACTTAAAGGTGCCAAT
65 AGCTATATTGGACTTAAAGGTGCCAAT
* * *
1409399 GTGCTGATTGAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATACTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AA-GTGCCAATATGCTGATTCAAG
1409464 GCCAGCTATATTGGACTTAAAGGTGCCAAT
62 GCCAGCTATATTGGACTTAAAGGTGCCAAT
1409494 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAG-TGCCAATATGCTGATTCAAGGCC
*
1409559 AGCGATATTGGACTTAAAGATGAAGATGCCAAT
65 AGCTATATTGGACTT-AA-A-G--G-TGCCAAT
* * * * *
1409592 ATGCTGATTCAAGGTCAGCGATATTGGACTT-AA-A-G--GTGCCAATGTGCTGATTCAAGGCCA
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGTGCCAATATGCTGATTCAAGGCCA
*
1409652 GCTACATTGGACTTAAAGATGAAGATGCCAAT
66 GCTATATTGGACTT-AA-A-G--G-TGCCAAT
* * * * * *
1409684 ATGTTGATTCAAGGCCAACGATATTGGACTT-AA-A-G--GTGCCAATGTGCTGATTCAAGGCCA
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGTGCCAATATGCTGATTCAAGGCCA
*
1409744 GCTACATTGGACTTAAAGATGAAGATGCCAAT
66 GCTATATTGGACTT-AA-A-G--G-TGCCAAT
* * * *
1409776 ATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--GTGCCAATGTGCTGATTCAAGGCCA
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGTGCCAATATGCTGATTCAAGGCCA
*
1409836 GCTACATTGGACTTAAAGATGAAGATGCCAAT
66 GCTATATTGGACTT-AA-A-G--G-TGCCAAT
* * * * *
1409868 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCCAATATGCTGATTTAAGG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG--AA-GTGCCAATATGCTGATTCAAGG
*
1409933 CCAGCGATATTGGACTTAAAGGTGCCAAT
63 CCAGCTATATTGGACTTAAAGGTGCCAAT
1409962 GTGCTGATTCAAGGCCAGCTACATTG
1 GTGCTGATTCAAGGCCAGCTACATTG
1409988 CGCTTAGAAG
Statistics
Matches: 720, Mismatches: 33, Indels: 41
0.91 0.04 0.05
Matches are distributed among these distances:
91 2 0.00
92 476 0.66
93 6 0.01
94 33 0.05
95 125 0.17
96 2 0.00
97 4 0.01
98 35 0.05
99 2 0.00
100 35 0.05
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (91 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGTGCCAATATGCTGATTCAAGGCCA
GCTATATTGGACTTAAAGGTGCCAAT
Found at i:1409935 original size:51 final size:51
Alignment explanation
Indices: 1409811--1409965 Score: 235
Period size: 51 Copynumber: 3.1 Consensus size: 51
1409801 GGACTTAAAG
* * * *
1409811 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG--AA-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAAT
1409859 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAAT
1 G-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAAT
*
1409911 GTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGGTGCCAAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAAT
1409962 GTGC
1 GTGC
1409966 TGATTCAAGG
Statistics
Matches: 98, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
48 1 0.01
49 41 0.42
51 55 0.56
52 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (51 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAAT
Found at i:1410035 original size:33 final size:33
Alignment explanation
Indices: 1409993--1410105 Score: 167
Period size: 33 Copynumber: 3.4 Consensus size: 33
1409983 CATTGCGCTT
*
1409993 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-AG
1 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTGAA
1410026 AGAATGGTTGCCACCGACTTGTGTGGGCTTTGAA
1 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTGAA
*
1410060 AGAAGGTTGCCACCGACTTGTGTGGGCTTTGGGA
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTT-GAA
1410094 AGAAGG-TGCCAC
1 AGAAGGTTGCCAC
1410106 GGAGTCGTGG
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
33 62 0.83
34 13 0.17
ACGTcount: A:0.20, C:0.19, G:0.35, T:0.26
Consensus pattern (33 bp):
AGAAGGTTGCCACCGACTTGTGTGGGCTTTGAA
Found at i:1410137 original size:34 final size:34
Alignment explanation
Indices: 1410098--1410945 Score: 428
Period size: 34 Copynumber: 25.6 Consensus size: 34
1410088 TTGGGAAGAA
*
1410098 GGTGCCACGGAGTCGTGGACTTGAAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTGAAAGGAAAAAG
* * *
1410132 GGTGCCACAGAGTTGTGGGCTTTG-AA--AAGAA-
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
* *
1410163 GGTGCCACTGGAGTTGTGGGCTTTG-CA-G-AAAAG
1 GGTGCCAC-GGAGTTGTGGAC-TTGAAAGGAAAAAG
* * ** ** *
1410196 GATACCACTAAGTCATGGACTGTAAAAGGGAAAAAG
1 GGTGCCACGGAGTTGTGGACT-TGAAA-GGAAAAAG
* * * *
1410232 AGTGCCACAGAGTTATGGACTTTGAAAAGAAAAA-
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
1410266 GGTGCCACGGAGTTGTGGACTT-AGAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTGA-AAGGAAAAAG
* * * * *
1410300 AGTGCCACGGTGTTGTGGGCTT-------CAACG
1 GGTGCCACGGAGTTGTGGACTTGAAAGGAAAAAG
* *
1410327 GGTGCCACAGAATTGTGGACTT-AGAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTGA-AAGGAAAAAG
* * * *
1410361 AGTGCCAC-GACGTTGTGGGCTTTAAAAAGAAAAA-
1 GGTGCCACGGA-GTTGTGGAC-TTGAAAGGAAAAAG
* *
1410395 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAA-
1 GGTGCCACGGAGTTGTGGACTTGAAAGGAAAAAG
*
1410428 GGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTGAAA-GGAAAAAG
* * * *
1410463 AGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA-
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
* *
1410497 GGTGCCACAGAGTTGTGGGCTTTG-AA-G-AAAAG
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
* * *
1410529 GATGCCACTGAGTCGTGGACTTTG--A-GACAAAA-
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGA-AAAAG
* *
1410561 --TGCCACTGAGTCGTGGACTTTG-AA-G-AAAAG
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
* * ** *
1410591 GATGCCACTGAGTCATGGACTGTAAAAGGGAAAAAG
1 GGTGCCACGGAGTTGTGGACT-TGAAA-GGAAAAAG
* * *
1410627 AGTGCCACGGAGTTATGGACTTTGAAAAGAAAAA-
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
1410661 GGTGCCACGGAGTTGTGGACTT-AGAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTGA-AAGGAAAAAG
* * * * *
1410695 AGTGCCACGGTGTTGTGGGCTT-------CAACG
1 GGTGCCACGGAGTTGTGGACTTGAAAGGAAAAAG
*
1410722 GGTGCCACGGAATTGTGGACTT-AGAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTGA-AAGGAAAAAG
* * * *
1410756 AGTGCCAC-GATGTTGTGGGCTTTAAGAAGAAAAA-
1 GGTGCCACGGA-GTTGTGGACTTGAA-AGGAAAAAG
* *
1410790 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAA-
1 GGTGCCACGGAGTTGTGGACTTGAAAGGAAAAAG
* *
1410823 GGTGCCACGGAGTTATGGACTTAAAAGGGAAAAAG
1 GGTGCCACGGAGTTGTGGACTTGAAA-GGAAAAAG
* * * * *
1410858 AGTGCCATGGAGTTGTGGGCTTTAAAAAGAAAAA-
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
* * * *
1410892 GGTGCCATGAAATTGTGGGCTTTG-AA-G-AAAAG
1 GGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAAG
* * *
1410924 GATGCCACTGAGTCGTGGACTT
1 GGTGCCACGGAGTTGTGGACTT
1410946 TGAGACAAAA
Statistics
Matches: 650, Mismatches: 108, Indels: 115
0.74 0.12 0.13
Matches are distributed among these distances:
27 41 0.06
29 4 0.01
30 22 0.03
31 24 0.04
32 86 0.13
33 109 0.17
34 216 0.33
35 85 0.13
36 61 0.09
37 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (34 bp):
GGTGCCACGGAGTTGTGGACTTGAAAGGAAAAAG
Found at i:1410169 original size:98 final size:101
Alignment explanation
Indices: 1410047--1410262 Score: 257
Period size: 98 Copynumber: 2.2 Consensus size: 101
1410037 CACCGACTTG
* * * *
1410047 TGTGGGCTTTG-AAAGAAGGTTGCCAC-CGACTTGTGTGGGCTTTG-GGAAGAAGG-TGCCACGG
1 TGTGGGCTTTGAAAAGAAGGTTGCCACTCGA-GT-TGTGGGCTTTGCAGAA-AAGGATACCACGA
* * *
1410108 AGTCGTGGACT-TGAAA-GGAAAAAGGGTGCCACAGAGT
63 AGTCATGGACTGTAAAAGGGAAAAAGAGTGCCACAGAGT
* *
1410145 TGTGGGCTTTGAAAAGAAGG-TGCCACTGGAGTTGTGGGCTTTGCAGAAAAGGATACCACTAAGT
1 TGTGGGCTTTGAAAAGAAGGTTGCCACTCGAGTTGTGGGCTTTGCAGAAAAGGATACCACGAAGT
1410209 CATGGACTGTAAAAGGGAAAAAGAGTGCCACAGAGT
66 CATGGACTGTAAAAGGGAAAAAGAGTGCCACAGAGT
* *
1410245 TATGGACTTTGAAAAGAA
1 TGTGGGCTTTGAAAAGAA
1410263 AAAGGTGCCA
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
97 15 0.15
98 36 0.36
99 14 0.14
100 36 0.36
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.22
Consensus pattern (101 bp):
TGTGGGCTTTGAAAAGAAGGTTGCCACTCGAGTTGTGGGCTTTGCAGAAAAGGATACCACGAAGT
CATGGACTGTAAAAGGGAAAAAGAGTGCCACAGAGT
Found at i:1410298 original size:68 final size:67
Alignment explanation
Indices: 1410091--1411007 Score: 649
Period size: 68 Copynumber: 13.9 Consensus size: 67
1410081 GTGGGCTTTG
* * * * * * *
1410091 GGAAGAAG-GTGCCACGGAGTCGTGGACTTGAAAGGAAAAAGGGTGCCACAGAGTTGTGGGCTTT
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAA-GGTGCCACGGAGTTGTGGACTTA
*
1410155 GAA
65 AAA
* * ** * ** **
1410158 --AAGAAG-GTGCCACTGGAGTTGTGGGCTTT-GCAG-AAAAGGATACCACTAAGTCATGGACTG
1 GGAAAAAGAGTGCCAC-GGAGTTGTGGACTTTAAAAGAAAAAGG-TGCCACGGAGTTGTGGACT-
1410218 TAAAA
63 TAAAA
* *
1410223 GGGAAAAAGAGTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 -GGAAAAAGAGTGCCACGGAGTTGTGGACTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
*
1410288 AGAA
64 AAAA
* * * * * * *
1410292 GGAAAAAGAGTGCCACGGTGTTGTGGGC-TTCAACG-----GGTGCCACAGAATTGTGGACTTAG
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAA
1410351 AA
66 AA
*
1410353 GGAAAAAGAGTGCCAC-GACGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 GGAAAAAGAGTGCCACGGA-GTTGTGGACTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1410417 AAAA
64 AAAA
* *
1410421 GGAACAAG-GTGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAA--GAAAAAG-GTGCCACGGAGTTGTGGAC-
1410484 TTAAAA
62 TTAAAA
* * * * * *
1410490 AGAAAAAG-GTGCCACAGAGTTGTGGGCTTT-GAAG-AAAAGGATGCCACTGAGTCGTGGACTT-
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGG-TGCCACGGAGTTGTGGACTTA
**
1410551 TGA
65 AAA
* * * * * **
1410554 -GACAAA-A-TGCCACTGAGTCGTGGACTTT-GAAG-AAAAGGATGCCACTGAGTCATGGACTGT
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGG-TGCCACGGAGTTGTGGACT-T
1410614 AAAA
64 AAAA
*
1410618 GGGAAAAAGAGTGCCACGGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 -GGAAAAAGAGTGCCACGGAGTTGTGGACTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
*
1410683 AGAA
64 AAAA
* * * * * *
1410687 GGAAAAAGAGTGCCACGGTGTTGTGGGC-TTCAACG-----GGTGCCACGGAATTGTGGACTTAG
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAA
1410746 AA
66 AA
*
1410748 GGAAAAAGAGTGCCAC-GATGTTGTGGGCTTTAAGAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 GGAAAAAGAGTGCCACGGA-GTTGTGGACTTTAA-AAGAAAAAGGTGCCACGGAGTTGTGGACTT
1410812 AAAA
64 AAAA
* * * *
1410816 GGAACAAG-GTGCCACGGAGTTATGGAC-TTAAAAGGGAAAAAGAGTGCCATGGAGTTGTGGGCT
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAA--GAAAAAG-GTGCCACGGAGTTGTGGAC-
1410879 TTAAAA
62 TTAAAA
* * * * * * * *
1410885 AGAAAAAG-GTGCCATGAAATTGTGGGCTTT-GAAG-AAAAGGATGCCACTGAGTCGTGGACTT-
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGG-TGCCACGGAGTTGTGGACTTA
**
1410946 TGA
65 AAA
* * * * * *
1410949 -GACAAA-A-TGCCACTGAGTCGTGGACTTT-GAAG-AAAAGGATGCCACTGAGTCGTGGACTT
1 GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGG-TGCCACGGAGTTGTGGACTT
1411008 TGAGAAGAGA
Statistics
Matches: 693, Mismatches: 106, Indels: 107
0.76 0.12 0.12
Matches are distributed among these distances:
60 2 0.00
61 99 0.14
62 98 0.14
63 18 0.03
64 20 0.03
65 29 0.04
66 68 0.10
67 50 0.07
68 184 0.27
69 74 0.11
70 39 0.06
71 12 0.02
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.20
Consensus pattern (67 bp):
GGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAA
AA
Found at i:1410566 original size:30 final size:31
Alignment explanation
Indices: 1410493--1411049 Score: 251
Period size: 32 Copynumber: 17.2 Consensus size: 31
1410483 TTTAAAAAGA
* * * *
1410493 AAAAGGTGCCACAGAGTTGTGGGCTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
1410524 AAAAGGATGCCACTGAGTCGTGGACTTTG-AG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAAG
1410555 ACAAA-ATGCCACTGAGTCGTGGACTTTGAAG
1 A-AAAGATGCCACTGAGTCGTGGACTTTGAAG
* **
1410586 AAAAGGATGCCACTGAGTCATGGACTGTAAAAGGG
1 AAAA-GATGCCACTGAGTCGTGGACT-TTGAA--G
* **
1410621 AAAAAGAGTGCCACGGAGTTATGGACTTTGAAAAG
1 -AAAAGA-TGCCACTGAGTCGTGGACTTTG--AAG
* * * *
1410656 AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGG
1 -AAAAGATGCCACTGAGTCGTGGACTTTGAA-G
* * * * *
1410689 AAAAAGAGTGCCACGGTGTTGTGGGC-TTCAACG
1 -AAAAGA-TGCCACTGAGTCGTGGACTTTGAA-G
* * * * *
1410722 ----GGTGCCACGGAATTGTGGACTTAGAAGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAA-G
* *
1410750 AAAAAGAGTGCCAC-GATGTTGTGGGCTTTAAGAAG
1 -AAAAGA-TGCCACTGA-GTCGTGGACTTT--GAAG
* * * **
1410785 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGG
1 -AAAAGATGCCACTGAGTCGTGGACTTTGAA-G
* * ** **
1410818 AACAAGGTGCCACGGAGTTATGGACTTAAAAGGG
1 AA-AAGATGCCACTGAGTCGTGGACTTTGAA--G
* * *
1410852 AAAAAGAGTGCCA-TGGAGTTGTGGGCTTTAAAAAG
1 -AAAAGA-TGCCACT-GAGTCGTGGACTTT--GAAG
* * * *
1410887 AAAAAGGTGCCA-TGAAATTGTGGGCTTTGAAG
1 -AAAAGATGCCACTG-AGTCGTGGACTTTGAAG
1410919 AAAAGGATGCCACTGAGTCGTGGACTTTG-AG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAAG
1410950 ACAAA-ATGCCACTGAGTCGTGGACTTTGAAG
1 A-AAAGATGCCACTGAGTCGTGGACTTTGAAG
1410981 AAAAGGATGCCACTGAGTCGTGGACTTTG-AG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAAG
* * *
1411012 AAGAGATTGCCTCTGAGTCGTGGGCTTTG-AG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
*
1411043 AAGAGAT
1 AAAAGAT
1411050 TTGAAGAATT
Statistics
Matches: 434, Mismatches: 51, Indels: 83
0.76 0.09 0.15
Matches are distributed among these distances:
27 15 0.03
28 5 0.01
30 55 0.13
31 53 0.12
32 94 0.22
33 48 0.11
34 90 0.21
35 45 0.10
36 24 0.06
37 5 0.01
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.22
Consensus pattern (31 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:1410919 original size:395 final size:395
Alignment explanation
Indices: 1410165--1411006 Score: 1533
Period size: 395 Copynumber: 2.1 Consensus size: 395
1410155 GAAAAGAAGG
* * * * *
1410165 TGCCACTGGAGTTGTGGGCTTTGCAGAAAAGGATACCACTAAGTCATGGACTGTAAAAGGGAAAA
1 TGCCACT-GAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTGTAAAAGGGAAAA
1410230 AGAGTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGA
65 AGAGTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGA
1410295 AAAAGAGTGCCACGGTGTTGTGGGCTTCAACGGGTGCCACAGAATTGTGGACTTAGAAGGAAAAA
130 AAAAGAGTGCCACGGTGTTGTGGGCTTCAACGGGTGCCACAGAATTGTGGACTTAGAAGGAAAAA
1410360 GAGTGCCACGACGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
195 GAGTGCCACGACGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
1410425 CAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
260 CAAGGTGCCACGGAGTTATGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
*
1410490 AGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAG
325 AGAAAAAGGTGCCACAGAATTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAG
1410555 ACAAAA
390 ACAAAA
1410561 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTGTAAAAGGGAAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTGTAAAAGGGAAAAA
*
1410626 GAGTGCCACGGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAA
66 GAGTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAA
*
1410691 AAAGAGTGCCACGGTGTTGTGGGCTTCAACGGGTGCCACGGAATTGTGGACTTAGAAGGAAAAAG
131 AAAGAGTGCCACGGTGTTGTGGGCTTCAACGGGTGCCACAGAATTGTGGACTTAGAAGGAAAAAG
* *
1410756 AGTGCCACGATGTTGTGGGCTTTAAGAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
196 AGTGCCACGACGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
*
1410821 AAGGTGCCACGGAGTTATGGACTTAAAAGGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAA
261 AAGGTGCCACGGAGTTATGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
1410886 GAAAAAGGTGCCA-TGAAATTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAG
326 GAAAAAGGTGCCACAG-AATTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAG
1410950 ACAAAA
390 ACAAAA
*
1410956 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACT
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACT
1411007 TTGAGAAGAG
Statistics
Matches: 431, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
394 1 0.00
395 423 0.98
396 7 0.02
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (395 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTGTAAAAGGGAAAAA
GAGTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAA
AAAGAGTGCCACGGTGTTGTGGGCTTCAACGGGTGCCACAGAATTGTGGACTTAGAAGGAAAAAG
AGTGCCACGACGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
AAGGTGCCACGGAGTTATGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
GAAAAAGGTGCCACAGAATTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGA
CAAAA
Found at i:1411007 original size:163 final size:154
Alignment explanation
Indices: 1410327--1411007 Score: 415
Period size: 164 Copynumber: 4.1 Consensus size: 154
1410317 GGCTTCAACG
* * *
1410327 GGTGCCACAGAATTGTGGACTTAGAAGGAAAAAGAGTGCCAC-GACGTTGTGGGCTTTAAAAAGA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGA-GTTGTGGGC-TT-AAAAG-
* * ** * * *
1410391 AAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGG-TGCCACGGAGTTGTGGACTTAAAAG
62 ----GGTGCCACGAAATTGTGGACTTTGAA-GAA-AAGGATGCCACTGAGTCGTGGACTT---TG
* * *
1410455 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
118 AG-AAAA-AGTGCCACGGAGTTGTGGACTTT--GAAG-AAAA
* * ** * * * *
1410497 GGTGCCACAGAGTTGTGGGCTTTGAA-GAAAAGGA-TGCCACTGAGTCGTGGACTTTGAGACAA-
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-A-A-AAG
** * * * * *
1410559 AATGCCACTG-AGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTGTAAAAGGGAA
62 GGTGCCAC-GAAATTGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACT-T---TGAG-A
*
1410623 AAAGAGTGCCACGGAGTTATGGACTTTGAAAAGAAAAA
121 AAA-AGTGCCACGGAGTTGTGGACTTTG--AAG-AAAA
* * * *
1410661 GGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGTGTTGTGGGCTTCAACGGGTG
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGGTG
* * * * *
1410726 CCACGGAATTGTGGACTTAGAAGGAAAAAGAGTGCCAC-GATGTTGTGGGCTTTAAGAAGAAAAA
66 CCACGAAATTGTGGACTTTGAA-GAAAAGGA-TGCCACTGA-GTCGTGGACTTT--G-AGAAAAA
**
1410790 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAA
125 -GTGCCACGGAGTTGTGGACTTTGAA-GAA-AA
* *
1410823 GGTGCCACGGAGTTATGGACTTAAAAGGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAGA
1 GGTGCCACGGAGTTGTGGACTTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAAG-
* *
1410888 AAAAGGTGCCATGAAATTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACA
62 ----GGTGCCACGAAATTGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGA-A
* *
1410953 AAA-TGCCACTGAGTCGTGGACTTTGAAGAAAA
122 AAAGTGCCACGGAGTTGTGGACTTTGAAGAAAA
* *
1410985 GGATGCCACTGAGTCGTGGACTT
1 GG-TGCCACGGAGTTGTGGACTT
1411008 TGAGAAGAGA
Statistics
Matches: 417, Mismatches: 62, Indels: 71
0.76 0.11 0.13
Matches are distributed among these distances:
161 4 0.01
162 38 0.09
163 110 0.26
164 118 0.28
165 29 0.07
166 19 0.05
168 33 0.08
169 19 0.05
170 47 0.11
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (154 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGGTG
CCACGAAATTGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAAAAGTGCCA
CGGAGTTGTGGACTTTGAAGAAAA
Found at i:1411050 original size:31 final size:30
Alignment explanation
Indices: 1410906--1411049 Score: 182
Period size: 31 Copynumber: 4.6 Consensus size: 30
1410896 CCATGAAATT
*
1410906 GTGGGCTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAA-GATGCCACTGAGTC
1410938 GTGGACTTTGAGACAAA-ATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAGATGCCACTGAGTC
1410968 GTGGACTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAA-GATGCCACTGAGTC
* *
1411000 GTGGACTTTGAGAAGAGATTGCCTCTGAGTC
1 GTGGACTTTGAGAAAAGA-TGCCACTGAGTC
* *
1411031 GTGGGCTTTGAGAAGAGAT
1 GTGGACTTTGAGAAAAGAT
1411050 TTGAAGAATT
Statistics
Matches: 103, Mismatches: 4, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
30 29 0.28
31 39 0.38
32 35 0.34
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (30 bp):
GTGGACTTTGAGAAAAGATGCCACTGAGTC
Found at i:1413918 original size:52 final size:52
Alignment explanation
Indices: 1413833--1413957 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
1413823 ATATGAAAAG
* *
1413833 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
1413885 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
1413937 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
1413958 AAGATCAATG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:1413968 original size:52 final size:52
Alignment explanation
Indices: 1413833--1413977 Score: 204
Period size: 52 Copynumber: 2.8 Consensus size: 52
1413823 ATATGAAAAG
* * *
1413833 TTGCTTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TAAGATAATGTATCGATACATCTGGGCAAAT
***
1413885 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
1413937 TTGCCTGCATGTATCGATACA-AAGATCAATGTATCGATACA
1 TTGCCTGCATGTATCGATACATAAGAT-AATGTATCGATACA
1413978 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 4 0.05
52 81 0.95
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
Found at i:1413981 original size:13 final size:13
Alignment explanation
Indices: 1413963--1413990 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1413953 ATACAAAGAT
1413963 CAATGTATCGATA
1 CAATGTATCGATA
1413976 CAATGTATCGATA
1 CAATGTATCGATA
1413989 CA
1 CA
1413991 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1414057 original size:20 final size:20
Alignment explanation
Indices: 1414032--1414086 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1414022 GTAGCTTAAA
1414032 ATGTATCGATACAAAAAAAT
1 ATGTATCGATACAAAAAAAT
* ***
1414052 ATGTATCGATACAACATTTT
1 ATGTATCGATACAAAAAAAT
1414072 ATGTATCGATACAAA
1 ATGTATCGATACAAA
1414087 TTGTTGAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAAAAAAAT
Found at i:1414526 original size:30 final size:31
Alignment explanation
Indices: 1414492--1414550 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
1414482 CCTTATAACA
*
1414492 CTATCTTTT-GAAGGCTAAGATAGAACCTCC
1 CTATCTTTTCAAAGGCTAAGATAGAACCTCC
1414522 CTATCTTTTCAAAGGCTAAGATAGAACCT
1 CTATCTTTTCAAAGGCTAAGATAGAACCT
1414551 ATCAACCACT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (31 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCC
Found at i:1415590 original size:20 final size:20
Alignment explanation
Indices: 1415565--1415616 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
1415555 TGCAAGCCAA
**
1415565 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
1415585 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
1415604 TGTATCGATACAA
1 TGTATCGATACAA
1415617 GTTTCGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:1416392 original size:20 final size:20
Alignment explanation
Indices: 1416367--1416405 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
1416357 ACACACATAT
1416367 CAAAAATTTATTTGCACATC
1 CAAAAATTTATTTGCACATC
1416387 CAAAAATTTATTTGCACAT
1 CAAAAATTTATTTGCACAT
1416406 ACATCTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (20 bp):
CAAAAATTTATTTGCACATC
Found at i:1418197 original size:13 final size:13
Alignment explanation
Indices: 1418179--1418217 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1418169 ATAATCTCTC
*
1418179 TGTATCGATACAG
1 TGTATCGATACAA
1418192 TGTATCGATACAA
1 TGTATCGATACAA
1418205 TGTATCGATACAA
1 TGTATCGATACAA
1418218 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1420308 original size:15 final size:15
Alignment explanation
Indices: 1420288--1420318 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1420278 ATTTCGTTTG
*
1420288 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1420303 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1420318 G
1 G
1420319 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1424400 original size:13 final size:13
Alignment explanation
Indices: 1424382--1424407 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1424372 CAATTTTTTG
1424382 TGTATCGATACAT
1 TGTATCGATACAT
1424395 TGTATCGATACAT
1 TGTATCGATACAT
1424408 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1424419 original size:32 final size:33
Alignment explanation
Indices: 1424362--1424423 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
1424352 TGCAAGCCAA
**
1424362 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
1424395 TGTATCGATAC-ATACTTTGTGTATCGATA
1 TGTATCGATACAATACTTTGTGTATCGATA
1424424 AAAGTTTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:1436406 original size:157 final size:153
Alignment explanation
Indices: 1436124--1436408 Score: 338
Period size: 157 Copynumber: 1.8 Consensus size: 153
1436114 CTATATTGCA
* * ** * *
1436124 TTAGATAGTTTAGAGACTAAATTGCAAAAAGTTTGAAATTTTTTTAAGTATCTTTGCTCGGCTGA
1 TTAGAAAGTTCAGAGACTAAATTGCAAAAAGTTCAAAATTTTTTTAAGTATCCTTGCTCGGCTCA
** * * ** *
1436189 AACTCCCTAGTGGCATAAGAGGACTATTTCATGCATTTCTAAATGTATTCTAGACTTTTTAACAT
66 AACTCCCTAGTACCACAAGAGGACTACTTCATGCATTTCTAAACATATTCTAGACCTTTTAACAT
1436254 GTTCGGGGAACTTTTTATAAACT
131 GTTCGGGGAACTTTTTATAAACT
*
1436277 TTAGAAAGTTCAGAGACTAAATTGCAAAAAAGTTCAAAATTTTTTCATTAAGTATCCTTGCTTGG
1 TTAGAAAGTTCAGAGACTAAATTGC-AAAAAGTTCAAAA-TTTTT--TTAAGTATCCTTGCTCGG
* * * * * *
1436342 -TCAAGAGTCCCTAGTACCACAGGAGGATTGCTTCATGCATTTCTAAACATATTTTAGGCCTTTT
62 CTCAA-ACTCCCTAGTACCACAAGAGGACTACTTCATGCATTTCTAAACATATTCTAGACCTTTT
1436406 AAC
126 AAC
1436409 GTATTATGGA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
153 23 0.21
154 11 0.10
155 5 0.05
156 3 0.03
157 65 0.61
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.36
Consensus pattern (153 bp):
TTAGAAAGTTCAGAGACTAAATTGCAAAAAGTTCAAAATTTTTTTAAGTATCCTTGCTCGGCTCA
AACTCCCTAGTACCACAAGAGGACTACTTCATGCATTTCTAAACATATTCTAGACCTTTTAACAT
GTTCGGGGAACTTTTTATAAACT
Found at i:1441000 original size:52 final size:52
Alignment explanation
Indices: 1440861--1442655 Score: 1024
Period size: 52 Copynumber: 34.7 Consensus size: 52
1440851 GAATGATAAG
* * * * *
1440861 GGTGCCAATATGCTGATTCAAGGCCGGTGACATTGGGCTTAA-AGATGACA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGA-AAGA-AGAA
* * * * * *
1440913 GGTACCGATGTGCT-A---AATGCCAGTGACATTAGACTTGAGAAAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* *
1440961 GGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* * * * * *
1441015 --TGCCAATGTGCTAATTCAATGCCAACGACATTGGGCTTAGGAATAGTA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAA-AGAAGAA
* * * * * * *
1441065 GATGCTAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAGATAACAAG--
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* * *
1441117 GGTGCCAATGTGCTAATTCAAGGCCAGCGACATTAGACTTGAGAAAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* * * * *
1441169 GATGCCAATGTGCCGATTCAAGGCCAACGACATTGGACTAAAAGATGAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACT-TAAGA-AAGAAGAA
* * * * *
1441223 --TGCCAATGTGCTAATTCAAGGCTAGCGACGTTGGGCTTAAGAATAGTA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAA-AGAAGAA
* * * * * * ** * * * *
1441273 GATTCTAATATGCTGATTCAAGGCGAACGATGTTGGGCTTAGGAGTAGGA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGA-AAGAAGAA
* * * * * * ** *
1441325 GATGCCAATATGCTTATTCAAGGCTAGCAATATTGGGTTTAAAGATAACAAG--
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* * * * *
1441377 GGTGCCAATGTCCTAATTCAAGGCCAGCGACATTAGACTTGAGAAGGAAG-A
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* *
1441428 GGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* * **
1441482 --TGCCAATGTGTTGATTCAAGGCCAGTGATGTTAGG-CTTAAGAATAGTAAG--
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAGAA-AG-AAGAA
* * * * * *
1441532 GATGCCAATATACTGATTCAAGGCCAGTGATATTAGG-CTTAAAGATAACAAG--
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTT-AAGA-AAGAAGAA
* * * *
1441584 GGTGCCAATGTGCTGATTTAAGGCTAACGACATTGGACTTGAGAAAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* *
1441636 GGTGCCAATATGCTGATTCAAGGCCAGCGACGTTAGG-CTTAAGAATAGTAA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAGAA-AG-AAGAA
** * * * * * * * *
1441689 ACTGCTAATATGTTGATTCAAGGCCAGCGATATTGGGCTTAA-AGATAACAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* * * *
1441740 TGGTGCCAATGTGCTAATTCAAGGCTAGCGACATTAGACTTGAGAAAGAAGAA
1 -GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* * * * * * *
1441793 GGTGCCAATGTGTTGAATCAAGGGCATCGATATTAGACTTAAAGATGAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* * * * * *
1441847 --TGACAATGTACTAATTCAAGGCCAGCGACGTTGGGCTTAAGAATAGCA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAA-AGAAGAA
* * * * * * *
1441897 GATGCCAATATGTTGATTCACA-GCTAGCGATATTGGGCTTGAAGACAACAAG--
1 GGTGCCAATGTGCTGATTCA-AGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* * * *
1441949 GGTGCCAATGTGCTAATTCAAGGCCAACGACATTAGACTTGAG-AA-AA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* ** *
1441998 GGTGCTAACATGCTGATTCAAGGCCAGCGACATT-GAGCTTAAGAATAGTA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA-CTTAAGAA-AGAAGAA
* * * * * * * *
1442050 GATGCCAATATACTGATTCAAGGCCAACGATATTGGGCTTAAAGATAA-CAG-G
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* * ** * *
1442102 GGTGCCAATGTGCTAATTCAAAGCCAATGACA-TGAGACTTGAGAAAGAAAAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTG-GACTTAAGAAAGAAGAA
** ** * *
1442154 GGTGCCAATGTGCTGATTCAAGGATAATGACGTTGGACTTAAAGATGAGAAGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
* ** *
1442208 --TGCCAATGTGCTAATTCAAGGCCAGCGATGTTGGACTTAAAGATAACAAG--
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGA-AAGAAGAA
**
1442258 GGTG-CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAATGATGGTAA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA-GAAAG-AAGAA
* * * * *
1442310 -GTGCTAATATGCTGATTCAAGGCCAGTGATATTGGACTT-A-AAAGATGACAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGA--AGAA
* * ** * *
1442361 GAGTGCCAATATGCTGATTTAAGGCCAGTAATATTGGACTTAAGAAAGAAAAAA
1 G-GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAG-AAGAA
** * * ** *
1442415 AATGCTAATGTGCTGATTCAAGGCCAGCGACAGTGGACTTAAAGATGGTA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGAAAGAAGAA
* * ** *
1442467 GGTGCCAATATGCTGATTCAAAGTGAGCGACATTGGTA-TT---AAAGATGAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG-ACTTAAGAAAGAAGAA
* * * *
1442516 GGTGCCAATGCGCTGATTTAAGGCTAGCGACATTGGACTTAAGAAAGAAAAA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
* * * * * ** *
1442568 AGTGTCAATGTGCTGATTCAAGGCCAACAACAATGGACTTAAAGATGGTA-AA
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAGAAAGAAGAA
* * ** *
1442620 GGTGCTAATATATTGATTCAAGGCCAGCGATATTGG
1 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
1442656 GCTTGTGCCA
Statistics
Matches: 1340, Mismatches: 309, Indels: 188
0.73 0.17 0.10
Matches are distributed among these distances:
47 1 0.00
48 42 0.03
49 74 0.06
50 28 0.02
51 129 0.10
52 850 0.63
53 168 0.13
54 43 0.03
55 4 0.00
56 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (52 bp):
GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAGAAGAA
Found at i:1442607 original size:259 final size:257
Alignment explanation
Indices: 1441119--1442614 Score: 709
Period size: 259 Copynumber: 5.8 Consensus size: 257
1441109 ATAACAAGGG
* * * * * *
1441119 TGCCAATGTGCTAATTCAAGGCCAGCGACATTAGACTTGAGAA-A-GAAGAAG-ATGCCAATGTG
1 TGCCAATGTGCTGATTCAAGGACAACGACGTTGGACTT-A-AAGATG-AGAAGAATGCCAATATG
** * * * * ** * * *
1441181 CCGATTCAAGGCCAACGACATTGGACTAAAAGATGAGAAGAATGCCAATGTGCTAATTCAAGGCT
63 CTAATTCAAAGCCAGCGACATTGGACTTAAAGAT-ACAAGGGTG-CAATGCGCTGATTCAAGGCC
* * * * * * * *
1441246 AGCGACGTTGGGCTTAAGAATAGTAAAGA-TTCTAATATGCTGATTCAAGGCGAACGATGTTGGG
126 AGCGACATTGGACTTAAGAA-AGAAAAAAGTGC-AATATGCTGATTCAAGGCCAACGATATTGGA
* * * * * ** * ** *
1441310 CTTAGGAGTAGGA-AAGA-TGCCAATATGCTTATTCAAGGCTAGCAATATTG-GGTTTAAAGATA
189 CTTA-AAG-ATGACAAGAGTGCCAATATGCTAATTCAAAGCCAATAACA-TGAGACTT-AAGAAA
* ***
1441372 -ACAAGGG
250 GAAAAAAA
* * * * * * * * * *
1441379 TGCCAATGTCCTAATTCAAGGCCAGCGACATTAGACTT-GAGAAG-GAAGAGGTGCCAATGTGCT
1 TGCCAATGTGCTGATTCAAGGACAACGACGTTGGACTTAAAGATGAGAAGA-ATGCCAATATGCT
* * * * ** * *
1441442 GATTCAAGGCCAACGACATTGGACTTAAAGATGAGAAGAATGCCAATGTGTTGATTCAAGGCCAG
65 AATTCAAAGCCAGCGACATTGGACTTAAAGAT-ACAAGGGTG-CAATGCGCTGATTCAAGGCCAG
* ** * ** * **
1441507 TGATGTTAGG-CTTAAGAATAGTAAGGA-TGCCAATATACTGATTCAAGGCCAGTGATATTAGG-
128 CGACATT-GGACTTAAGAA-AGAAAAAAGTG-CAATATGCTGATTCAAGGCCAACGATATT-GGA
* * * * * * * ** *
1441569 CTTAAAGATAACAAGGGTGCCAATGTGCTGATTTAAGGCTAACGACATTG-GACTTGAGAAAGAA
189 CTTAAAGATGACAAGAGTGCCAATATGCTAATTCAAAGCCAATAACA-TGAGACTTAAGAAAGAA
* **
1441633 GAAGG
253 AAAAA
* * * * *
1441638 TGCCAATATGCTGATTCAAGGCCAGCGACGTTAGG-CTT-AAGAAT-AGTAAAAACTGCTAATAT
1 TGCCAATGTGCTGATTCAAGGACAACGACGTT-GGACTTAAAG-ATGAG-AAGAA-TGCCAATAT
* * * * * * * *
1441700 GTTGATTCAAGGCCAGCGATATTGGGCTTAAAGATAACAATGGTGCCAATGTGCTAATTCAAGGC
62 GCTAATTCAAAGCCAGCGACATTGGACTTAAAGAT-ACAAGGGTG-CAATGCGCTGATTCAAGGC
* * * * * * * * * * *
1441765 TAGCGACATTAGACTTGAGAAAGAAGAAGGTGCCAATGTGTTGAATCAAGGGCATCGATATTAGA
125 CAGCGACATTGGACTTAAGAAAGAAAAAAGTG-CAATATGCTGATTCAAGGCCAACGATATTGGA
* * * * * * *** * *
1441830 CTTAAAGATGAGAAGAATGACAATGTACTAATTCAAGGCCAGCGACGTTG-GGCTTAAGAATAG-
189 CTTAAAGATGACAAGAGTGCCAATATGCTAATTCAAAGCCAATAAC-ATGAGACTTAAGAA-AGA
* *
1441893 CAAAGA
252 AAAAAA
* * * ** * * ** * ** *
1441899 TGCCAATATGTTGATTCACA-G-CTAGCGATATTGGGCTTGAAGACAACAAGGGTGCCAATGTGC
1 TGCCAATGTGCTGATTCA-AGGAC-AACGACGTTGGACTTAAAGATGAGAAGAATGCCAATATGC
* * * * * * ***
1441962 TAATTCAAGGCCAACGACATTAGACTT-GAGA-AAAAAGGTGCTAACATGCTGATTCAAGGCCAG
64 TAATTCAAAGCCAGCGACATTGGACTTAAAGATACAAGGGTGC-AATGCGCTGATTCAAGGCCAG
* * * *
1442025 CGACATT-GAGCTTAAGAATAGTAAAGA-TGCCAATATACTGATTCAAGGCCAACGATATTGGGC
128 CGACATTGGA-CTTAAGAA-AGAAAAAAGTG-CAATATGCTGATTCAAGGCCAACGATATTGGAC
* * * * * *
1442088 TTAAAGATAACAGGGGTGCCAATGTGCTAATTCAAAGCCAATGACATGAGACTTGAGAAAGAAAA
190 TTAAAGATGACAAGAGTGCCAATATGCTAATTCAAAGCCAATAACATGAGACTTAAGAAAGAAAA
**
1442153 AGG
255 AAA
* * *
1442156 TGCCAATGTGCTGATTCAAGGATAATGACGTTGGACTTAAAGATGAGAAGAATGCCAATGTGCTA
1 TGCCAATGTGCTGATTCAAGGACAACGACGTTGGACTTAAAGATGAGAAGAATGCCAATATGCTA
* ** *
1442221 ATTCAAGGCCAGCGATGTTGGACTTAAAGATAACAAGGGTGCAATGTGCTGATTCAAGGCCAGCG
66 ATTCAAAGCCAGCGACATTGGACTTAAAGAT-ACAAGGGTGCAATGCGCTGATTCAAGGCCAGCG
* ** **
1442286 ACATTGGACTTAATG-ATGGTAAAAGTGCTAATATGCTGATTCAAGGCCAGTGATATTGGACTTA
130 ACATTGGACTTAA-GAAAGAAAAAAGTGC-AATATGCTGATTCAAGGCCAACGATATTGGACTT-
* * * * *
1442350 AAAGATGACAAGAGTGCCAATATGCTGATTTAAGGCCAGTAATATTG-GACTTAAGAAAGAAAAA
192 AAAGATGACAAGAGTGCCAATATGCTAATTCAAAGCCAATAACA-TGAGACTTAAGAAAG-AAAA
1442414 AAA
255 AAA
* * * *
1442417 TGCTAATGTGCTGATTCAAGGCCAGCGACAG-TGGACTTAAAGATG-GTAA-AGGTGCCAATATG
1 TGCCAATGTGCTGATTCAAGGACAACGAC-GTTGGACTTAAAGATGAG-AAGA-ATGCCAATATG
* ** * * *
1442479 CTGATTCAAAGTGAGCGACATTGGTA-TTAAAGAT-GAA-GGTGCCAATGCGCTGATTTAAGGCT
63 CTAATTCAAAGCCAGCGACATTGG-ACTTAAAGATACAAGGGTG-CAATGCGCTGATTCAAGGCC
* * * *
1442541 AGCGACATTGGACTTAAGAAAGAAAAAAGTGTCAATGTGCTGATTCAAGGCCAACAACAATGGAC
126 AGCGACATTGGACTTAAGAAAGAAAAAAGTG-CAATATGCTGATTCAAGGCCAACGATATTGGAC
1442606 TTAAAGATG
190 TTAAAGATG
1442615 GTAAAGGTGC
Statistics
Matches: 975, Mismatches: 212, Indels: 100
0.76 0.16 0.08
Matches are distributed among these distances:
256 8 0.01
257 189 0.19
258 34 0.03
259 329 0.34
260 142 0.15
261 264 0.27
262 9 0.01
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (257 bp):
TGCCAATGTGCTGATTCAAGGACAACGACGTTGGACTTAAAGATGAGAAGAATGCCAATATGCTA
ATTCAAAGCCAGCGACATTGGACTTAAAGATACAAGGGTGCAATGCGCTGATTCAAGGCCAGCGA
CATTGGACTTAAGAAAGAAAAAAGTGCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
ATGACAAGAGTGCCAATATGCTAATTCAAAGCCAATAACATGAGACTTAAGAAAGAAAAAAA
Found at i:1442885 original size:33 final size:32
Alignment explanation
Indices: 1442842--1443014 Score: 129
Period size: 33 Copynumber: 5.6 Consensus size: 32
1442832 TTGTGGACTT
* *
1442842 AAAAGATGCCACTGAGTTGTAGGCTTTGAAAAA
1 AAAAGGTGCCACGGAGTTGTAGGCTTT-AAAAA
**
1442875 AAAAGGTGCCACGGAGTTGT-GGACTTTAAGAGG
1 AAAAGGTGCCACGGAGTTGTAGG-CTTTAA-AAA
* *
1442908 AAAAGGTGCCACAGAGTTATAGGC-TT-----
1 AAAAGGTGCCACGGAGTTGTAGGCTTTAAAAA
* *
1442934 AAAAGGTGCCACGAAGTTGTGGGCTTTGAAAAGA
1 AAAAGGTGCCACGGAGTTGTAGGCTTT-AAAA-A
1442968 AAAAGGTGCCACGGAGTTGT-GGAC-TT----A
1 AAAAGGTGCCACGGAGTTGTAGG-CTTTAAAAA
1442995 AAAAGGTGCCACGGAGTTGT
1 AAAAGGTGCCACGGAGTTGT
1443015 GAGCTTAAAA
Statistics
Matches: 117, Mismatches: 11, Indels: 30
0.74 0.07 0.19
Matches are distributed among these distances:
26 20 0.17
27 23 0.20
32 6 0.05
33 46 0.39
34 22 0.19
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.22
Consensus pattern (32 bp):
AAAAGGTGCCACGGAGTTGTAGGCTTTAAAAA
Found at i:1442938 original size:59 final size:60
Alignment explanation
Indices: 1442874--1443032 Score: 209
Period size: 59 Copynumber: 2.7 Consensus size: 60
1442864 GCTTTGAAAA
*
1442874 AAAAAGGTGCCACGGAGTTGTGGACTTTAAGAGGAAAAGGTGCCACAGAGTTATAGG-CTT
1 AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAGGTGCCACAGAGTTAT-GGACTT
* * * * *
1442934 -AAAAGGTGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAAGGTGCCACGGAGTTGTGGACTTT-AAAAGGAAAAGGTGCCACAGAGTTATGGACTT
1442994 AAAAAGGTGCCACGGAGTTGT-GAGC-TTAAAAGGAAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGA-CTTTAAAAGGAAAAGG
1443033 AGTAACACGG
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
59 38 0.44
60 28 0.33
61 20 0.23
ACGTcount: A:0.35, C:0.13, G:0.33, T:0.20
Consensus pattern (60 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAGGTGCCACAGAGTTATGGACTT
Found at i:1442952 original size:92 final size:93
Alignment explanation
Indices: 1442792--1442993 Score: 288
Period size: 92 Copynumber: 2.2 Consensus size: 93
1442782 AGGGGGGTTA
* ** *
1442792 CCACGAAGTTGTGGAC-TTAGAGGAAAAGGGTGCCATGGAGTTGTGGACTTAAAAGATGCCACTG
1 CCACGGAGTTGTGGACTTTAGAGGAAAAGGGTGCCACAGAGTTATGGACTTAAAAGATGCCACTG
1442856 AGTTGTAGGCTTTGAAAA-AAAAAGGTG
66 AGTTGTAGGCTTTGAAAAGAAAAAGGTG
*
1442883 CCACGGAGTTGTGGACTTTAAGAGGAAAA-GGTGCCACAGAGTTATAGG-CTTAAAAGGTGCCAC
1 CCACGGAGTTGTGGACTTT-AGAGGAAAAGGGTGCCACAGAGTTAT-GGACTTAAAAGATGCCAC
*
1442946 -GAAGTTGTGGGCTTTGAAAAGAAAAAGGTG
64 TG-AGTTGTAGGCTTTGAAAAGAAAAAGGTG
1442976 CCACGGAGTTGTGGACTT
1 CCACGGAGTTGTGGACTT
1442994 AAAAAGGTGC
Statistics
Matches: 100, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
91 16 0.16
92 46 0.46
93 38 0.38
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.23
Consensus pattern (93 bp):
CCACGGAGTTGTGGACTTTAGAGGAAAAGGGTGCCACAGAGTTATGGACTTAAAAGATGCCACTG
AGTTGTAGGCTTTGAAAAGAAAAAGGTG
Found at i:1442958 original size:26 final size:27
Alignment explanation
Indices: 1442908--1443024 Score: 94
Period size: 27 Copynumber: 4.1 Consensus size: 27
1442898 CTTTAAGAGG
* *
1442908 AAAAGGTGCCAC-AGAGTTATAGGCTT-
1 AAAAGGTGCCACGA-AGTTGTGGGCTTA
1442934 AAAAGGTGCCACGAAGTTGTGGGCTTTGAAAAGA
1 AAAAGGTGCCACGAAGTTGTGGGC-TT------A
* *
1442968 AAAAGGTGCCACGGAGTTGTGGACTTA
1 AAAAGGTGCCACGAAGTTGTGGGCTTA
* *
1442995 AAAAGGTGCCACGGAGTTGTGAGCTTA
1 AAAAGGTGCCACGAAGTTGTGGGCTTA
1443022 AAA
1 AAA
1443025 GGAAAAGGAG
Statistics
Matches: 76, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
26 20 0.26
27 32 0.42
33 2 0.03
34 22 0.29
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (27 bp):
AAAAGGTGCCACGAAGTTGTGGGCTTA
Found at i:1443005 original size:27 final size:27
Alignment explanation
Indices: 1442967--1443024 Score: 100
Period size: 27 Copynumber: 2.1 Consensus size: 27
1442957 CTTTGAAAAG
1442967 AAAAAGGTGCCACGGAGTTGTG-GACTT
1 AAAAAGGTGCCACGGAGTTGTGAG-CTT
1442994 AAAAAGGTGCCACGGAGTTGTGAGCTT
1 AAAAAGGTGCCACGGAGTTGTGAGCTT
1443021 AAAA
1 AAAA
1443025 GGAAAAGGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (27 bp):
AAAAAGGTGCCACGGAGTTGTGAGCTT
Found at i:1443032 original size:93 final size:89
Alignment explanation
Indices: 1442792--1443026 Score: 259
Period size: 92 Copynumber: 2.6 Consensus size: 89
1442782 AGGGGGGTTA
* ** * *
1442792 CCACGAAGTTGTGGAC-TTAGAGGAAAAGGGTGCCATGGAGTTGT-GGACTTAAAAGATGCCACT
1 CCACGGAGTTGTGGACTTTA-A-GAAAA-GGTGCCACAGAGTTATAGG-CTTAAAAGGTGCCACT
1442855 GAGTTGTAGGCTTTGAAAAAAAAAGGTG
62 GAGTTGTAGGCTTTGAAAAAAAAAGGTG
1442883 CCACGGAGTTGTGGACTTTAAGAGGAAAAGGTGCCACAGAGTTATAGGCTTAAAAGGTGCCAC-G
1 CCACGGAGTTGTGGACTTT-A-A-GAAAAGGTGCCACAGAGTTATAGGCTTAAAAGGTGCCACTG
*
1442947 AAGTTGTGGGCTTTGAAAAGAAAAAGGTG
63 -AGTTGTAGGCTTTGAAAA-AAAAAGGTG
* *
1442976 CCACGGAGTTGTGGAC-TT-A-AAAAGGTGCCACGGAGTTGT-GAGCTTAAAAGG
1 CCACGGAGTTGTGGACTTTAAGAAAAGGTGCCACAGAGTTATAG-GCTTAAAAGG
1443027 AAAAGGAGTA
Statistics
Matches: 130, Mismatches: 8, Indels: 16
0.84 0.05 0.10
Matches are distributed among these distances:
86 1 0.01
87 28 0.22
89 1 0.01
91 16 0.12
92 48 0.37
93 36 0.28
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.22
Consensus pattern (89 bp):
CCACGGAGTTGTGGACTTTAAGAAAAGGTGCCACAGAGTTATAGGCTTAAAAGGTGCCACTGAGT
TGTAGGCTTTGAAAAAAAAAGGTG
Found at i:1443081 original size:34 final size:33
Alignment explanation
Indices: 1443043--1443124 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 33
1443033 AGTAACACGG
*
1443043 AGTCGTGGACTTGGAAGAAAATGGGATACCACTA
1 AGTCGTGGACTTGGAAGAAAA-GAGATACCACTA
* *
1443077 AGTCGTGGACTT-G--GAAAAGAGATGCCACTG
1 AGTCGTGGACTTGGAAGAAAAGAGATACCACTA
1443107 AGTCGTGGACTTGGAAGA
1 AGTCGTGGACTTGGAAGA
1443125 GACATGCCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
30 21 0.50
31 6 0.14
33 3 0.07
34 12 0.29
ACGTcount: A:0.32, C:0.15, G:0.33, T:0.21
Consensus pattern (33 bp):
AGTCGTGGACTTGGAAGAAAAGAGATACCACTA
Found at i:1443105 original size:30 final size:30
Alignment explanation
Indices: 1443043--1443135 Score: 105
Period size: 30 Copynumber: 3.0 Consensus size: 30
1443033 AGTAACACGG
* *
1443043 AGTCGTGGACTTGGAAGAAAATGGGATACCACTA
1 AGTCGTGGACTT-G--GAAAA-GAGATGCCACTA
*
1443077 AGTCGTGGACTTGGAAAAGAGATGCCACTG
1 AGTCGTGGACTTGGAAAAGAGATGCCACTA
* *
1443107 AGTCGTGGACTTGGAAGAGACATGCCACT
1 AGTCGTGGACTTGGAAAAGAGATGCCACT
1443136 GAGTTATGGG
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
30 36 0.67
31 5 0.09
33 1 0.02
34 12 0.22
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (30 bp):
AGTCGTGGACTTGGAAAAGAGATGCCACTA
Found at i:1443136 original size:30 final size:30
Alignment explanation
Indices: 1443071--1443139 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
1443061 AAATGGGATA
* *
1443071 CCACTAAGTCGTGGACTTGGAAAAGAGATG
1 CCACTGAGTCGTGGACTTGGAAAAGACATG
*
1443101 CCACTGAGTCGTGGACTTGGAAGAGACATG
1 CCACTGAGTCGTGGACTTGGAAAAGACATG
1443131 CCACTGAGT
1 CCACTGAGT
1443140 TATGGGCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.20
Consensus pattern (30 bp):
CCACTGAGTCGTGGACTTGGAAAAGACATG
Found at i:1446716 original size:34 final size:35
Alignment explanation
Indices: 1446677--1446749 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 35
1446667 ATTTTCTACA
* *
1446677 TTTCAAAGAGCTTTTGTATT-CTTTGTTG-TTATTC
1 TTTCAAAGAGCATTTGTATTCCTTT-ATGCTTATTC
**
1446711 TTTCAAAGCTCATTTGTATTCCTTTATGCTTATTC
1 TTTCAAAGAGCATTTGTATTCCTTTATGCTTATTC
1446746 TTTC
1 TTTC
1446750 TACAAACACC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 19 0.58
35 14 0.42
ACGTcount: A:0.18, C:0.16, G:0.11, T:0.55
Consensus pattern (35 bp):
TTTCAAAGAGCATTTGTATTCCTTTATGCTTATTC
Found at i:1447642 original size:13 final size:13
Alignment explanation
Indices: 1447624--1447649 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1447614 CAATTTTTTG
1447624 TGTATCGATACAT
1 TGTATCGATACAT
1447637 TGTATCGATACAT
1 TGTATCGATACAT
1447650 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1447714 original size:21 final size:21
Alignment explanation
Indices: 1447688--1447763 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
1447678 CTGCCAAGAA
*
1447688 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
***
1447709 ATGTATCGATACAT-TTCAAC
1 ATGTATCGATACATCTTTTTC
1447729 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1447750 ATGTATCGATACAT
1 ATGTATCGATACAT
1447764 TGCAACATGT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 16 0.34
21 31 0.66
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1447734 original size:20 final size:20
Alignment explanation
Indices: 1447709--1447781 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1447699 CATCTTTTTT
1447709 ATGTATCGATACATTTCAAC
1 ATGTATCGATACATTTCAAC
***
1447729 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TTCAAC
*
1447750 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTCAAC
1447770 ATGTATCGATAC
1 ATGTATCGATAC
1447782 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 28 0.62
21 17 0.38
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTTCAAC
Found at i:1447745 original size:41 final size:41
Alignment explanation
Indices: 1447688--1447781 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
1447678 CTGCCAAGAA
* *
1447688 ATGTATCGATACATCTTTTTTATGTATCGATACATTTCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1447729 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1447770 ATGTATCGATAC
1 ATGTATCGATAC
1447782 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1450252 original size:13 final size:13
Alignment explanation
Indices: 1450234--1450272 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1450224 ATAATCACCC
*
1450234 TGTATCGATACAG
1 TGTATCGATACAA
1450247 TGTATCGATACAA
1 TGTATCGATACAA
1450260 TGTATCGATACAA
1 TGTATCGATACAA
1450273 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1450283 original size:20 final size:20
Alignment explanation
Indices: 1450258--1450336 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
1450248 GTATCGATAC
1450258 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
1450278 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
1450303 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
1450323 CATGTATCGATACA
1 AATGTATCGATACA
1450337 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:1452363 original size:15 final size:15
Alignment explanation
Indices: 1452343--1452373 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1452333 ATTTCGTTTG
*
1452343 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1452358 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1452373 G
1 G
1452374 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1454206 original size:21 final size:21
Alignment explanation
Indices: 1454177--1454221 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1454167 AAGTTTTCAT
*
1454177 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1454197 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1454219 TTT
1 TTT
1454222 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1456453 original size:13 final size:13
Alignment explanation
Indices: 1456435--1456460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1456425 CAATTTTTTG
1456435 TGTATCGATACAT
1 TGTATCGATACAT
1456448 TGTATCGATACAT
1 TGTATCGATACAT
1456461 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1456525 original size:21 final size:21
Alignment explanation
Indices: 1456499--1456574 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1456489 CTGCCAAGAA
*
1456499 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1456520 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1456540 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1456561 ATGTATCGATACAT
1 ATGTATCGATACAT
1456575 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1456545 original size:20 final size:20
Alignment explanation
Indices: 1456520--1456592 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1456510 CATCTTTTTT
1456520 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1456540 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1456561 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1456581 ATGTATCGATAC
1 ATGTATCGATAC
1456593 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1456556 original size:41 final size:41
Alignment explanation
Indices: 1456499--1456592 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1456489 CTGCCAAGAA
*
1456499 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1456540 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1456581 ATGTATCGATAC
1 ATGTATCGATAC
1456593 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1458247 original size:128 final size:127
Alignment explanation
Indices: 1458004--1458336 Score: 380
Period size: 128 Copynumber: 2.6 Consensus size: 127
1457994 TTCAGTTTCG
* * ** *
1458004 CCCTGGTCAACCTTTCTAACCTGTTGGCTTTATCAGTTTTGCTCTAACCAAGCTTTTAATTGGTT
1 CCCTAGTCAACCTTT-TAACCTGTTGGCTTTATC-GGTTTGC-CTGGCCAACCTTTTAATTGGTT
* * * * * * *
1458069 GACTTTATCAGTTTTGCCCTGGTCAACCCCTTTAAACTTTCATTTGGTTGACTTCATTAGTTTTT
63 GACTTTATCGGTTTCGCCATGGTCAACCCCTTTAAACTTTCAATTAGTTGACTTCATCAGATTTT
*
1458134 CCCTAGTCAACCCTTTTAACCTGTTGGCTTTGTCGGTTTGCCTGGCCAACCTTTTAATTGGTTGA
1 CCCTAGTCAA-CCTTTTAACCTGTTGGCTTTATCGGTTTGCCTGGCCAACCTTTTAATTGGTTGA
* *
1458199 CTTTATCGGTTTCGCCATGGTCAA-CCCTGTTAACCTTTCAATTAGTTGACTTTATCAGATTTT
65 CTTTATCGGTTTCGCCATGGTCAACCCCT-TTAAACTTTCAATTAGTTGACTTCATCAGATTTT
* * * * ** * *
1458262 CCCTAGTTAATCCTTCTAACCTGTTAGCTTTATTGGTTTTGCCCTGGCCAACCTGGTAATCGATT
1 CCCTAGTCAA-CCTTTTAACCTGTTGGCTTTATCGG-TTTG-CCTGGCCAACCTTTTAATTGGTT
1458327 GACTTTATCG
63 GACTTTATCG
1458337 ATCTCGTCCT
Statistics
Matches: 174, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
127 4 0.02
128 100 0.57
129 10 0.06
130 55 0.32
131 5 0.03
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.41
Consensus pattern (127 bp):
CCCTAGTCAACCTTTTAACCTGTTGGCTTTATCGGTTTGCCTGGCCAACCTTTTAATTGGTTGAC
TTTATCGGTTTCGCCATGGTCAACCCCTTTAAACTTTCAATTAGTTGACTTCATCAGATTTT
Found at i:1458413 original size:81 final size:81
Alignment explanation
Indices: 1458267--1458457 Score: 188
Period size: 81 Copynumber: 2.4 Consensus size: 81
1458257 ATTTTCCCTA
* * * * * ** *
1458267 GTTAATCCTTCTAACCTGTTAGCTTTATTGGTTTTGCCCTGGCCAACCTGGTAATCGATTGACTT
1 GTTAACCCTTATAACCTGTTAGCTTTATCGGTTTTACCCTGACCAACCTGACAATCGATTAACTT
1458332 TATCGATCTCGTCCTG
66 TATCGATCTCGTCCTG
*
1458348 GTTAACCCTTATAACCTGTT-GCCTTTATCGGTTTTACCCTGACCAACCTTACAATC-AGTTAAC
1 GTTAACCCTTATAACCTGTTAG-CTTTATCGGTTTTACCCTGACCAACCTGACAATCGA-TTAAC
* * * ** *
1458411 TTTATAGGTTTCACCCTA
64 TTTATCGATCTCGTCCTG
* * *
1458429 GTCAACCCTTATAACCTATTTGCTTTATC
1 GTTAACCCTTATAACCTGTTAGCTTTATC
1458458 AATTTCTCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 2 0.02
81 87 0.97
82 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (81 bp):
GTTAACCCTTATAACCTGTTAGCTTTATCGGTTTTACCCTGACCAACCTGACAATCGATTAACTT
TATCGATCTCGTCCTG
Found at i:1458564 original size:49 final size:49
Alignment explanation
Indices: 1458471--1458565 Score: 111
Period size: 49 Copynumber: 1.9 Consensus size: 49
1458461 TTCTCCTTAG
* * * *
1458471 CCAACCTTTCAATCGGTTGACTTTATCAGTTTTGCCTCGGTCAACCTTT
1 CCAAACTTTCAATCAGTTGACTTTATCAGTTTCGCCTCGATCAACCTTT
* * *
1458520 CCAAACTTTCAATTAGTTGAGTTTATC-GATTTCGCCTTGATCAACC
1 CCAAACTTTCAATCAGTTGACTTTATCAG-TTTCGCCTCGATCAACC
1458566 CTTATAACCC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.03
49 37 0.97
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (49 bp):
CCAAACTTTCAATCAGTTGACTTTATCAGTTTCGCCTCGATCAACCTTT
Found at i:1458658 original size:49 final size:49
Alignment explanation
Indices: 1458601--1458698 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 49
1458591 TTCGCCTTGG
1458601 CCAACCTTTCAATCAATTAACTTTATCA-ATTTCACCCTAGTCAACCTTT
1 CCAACCTTTCAATCAATTAACTTTAT-AGATTTCACCCTAGTCAACCTTT
* * **
1458650 CCAACCTTTCAATCAGTTGACTTTATAGATTTTGCCCTAGTCAACCTTT
1 CCAACCTTTCAATCAATTAACTTTATAGATTTCACCCTAGTCAACCTTT
1458699 TTTCTCATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 1 0.02
49 43 0.98
ACGTcount: A:0.28, C:0.29, G:0.06, T:0.38
Consensus pattern (49 bp):
CCAACCTTTCAATCAATTAACTTTATAGATTTCACCCTAGTCAACCTTT
Found at i:1458694 original size:130 final size:130
Alignment explanation
Indices: 1458390--1458695 Score: 346
Period size: 130 Copynumber: 2.4 Consensus size: 130
1458380 TTTACCCTGA
* * * * * ** *
1458390 CCAACCTTACAATCAGTTAACTTTATAGGTTTCACCCTAGTCAACCCTTATAACCTATTTGCTTT
1 CCAACCTTTCAATCAGTTGACTTTATAGATTTCGCCCTAGTCAACCCTTATAACCCATAGGCTTC
* ** * * ** *
1458455 ATCAATTTCTCCTTAGCCAACCTTTCAATCGGTTGACTTTATCAGTTTTGCCTCGGTCAACCTTT
66 ATCAATTTCGCCTTAGCCAACCTTTCAATCAATTAACTTTATCAATTTACCCTCAGTCAACCTTT
* * * * * *
1458520 CCAAACTTTCAATTAGTTGAGTTTATCGATTTCG-CCTTGATCAACCCTTATAACCCGTAGGCTT
1 CCAACCTTTCAATCAGTTGACTTTATAGATTTCGCCCTAG-TCAACCCTTATAACCCATAGGCTT
** *
1458584 CATCGGTTTCGCCTTGGCCAACCTTTCAATCAATTAACTTTATCAATTTCACCCT-AGTCAACCT
65 CATCAATTTCGCCTTAGCCAACCTTTCAATCAATTAACTTTATCAATTT-ACCCTCAGTCAACCT
1458648 TT
129 TT
*
1458650 CCAACCTTTCAATCAGTTGACTTTATAGATTTTGCCCTAGTCAACC
1 CCAACCTTTCAATCAGTTGACTTTATAGATTTCGCCCTAGTCAACC
1458696 TTTTTTCTCA
Statistics
Matches: 142, Mismatches: 31, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
129 4 0.03
130 131 0.92
131 7 0.05
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (130 bp):
CCAACCTTTCAATCAGTTGACTTTATAGATTTCGCCCTAGTCAACCCTTATAACCCATAGGCTTC
ATCAATTTCGCCTTAGCCAACCTTTCAATCAATTAACTTTATCAATTTACCCTCAGTCAACCTTT
Found at i:1459921 original size:20 final size:22
Alignment explanation
Indices: 1459896--1459946 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
1459886 TTTTTCAAAA
1459896 TTCATTTATT-TTATG-AAT-TT
1 TTCATTT-TTCTTATGAAATATT
*
1459916 TTCATTTTTCTTTTGAAATATT
1 TTCATTTTTCTTATGAAATATT
1459938 TTCATTTTT
1 TTCATTTTT
1459947 GAAATACGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 2 0.07
20 11 0.41
21 3 0.11
22 11 0.41
ACGTcount: A:0.22, C:0.08, G:0.04, T:0.67
Consensus pattern (22 bp):
TTCATTTTTCTTATGAAATATT
Found at i:1460112 original size:164 final size:161
Alignment explanation
Indices: 1459843--1460261 Score: 388
Period size: 163 Copynumber: 2.6 Consensus size: 161
1459833 ATTCCAAACA
* ** *
1459843 TCAAAATTCTTTAAATATTATT-TTTCAA-TCACCGTTAAATCAGTTTTTCAAAATTCATTTATT
1 TCAAAATTCTTCAAATATTATTATTT-AATTCA-TATTAAATCAG-TTTTGAAAATTCATTTATT
* * ** *
1459906 TTATGAATTTTTCATTTTTCTTTTGAAATATTTTCATTTTTGAAATACG-AGGTTTCTACTCTAT
63 TCATGAGTTTTTCA-TTTT-TTTTGAAATATCATCATTTTTGAAATACGAAAGTTTCTACTCTAT
* * * *
1459970 AAGT-TTTTTC-GGGAAGATTTTTCTTAGTT-TATATTTT
126 AAATGTTTTTCAGGG--G--TTTTCTCAGTTCAAAATTTT
1460007 TCAAAATTCTTCAAATATTATTATTTAATTCATATTAAATCAGTTTTGAAGAATTCATCTTATTT
1 TCAAAATTCTTCAAATATTATTATTTAATTCATATTAAATCAGTTTTGAA-AATTCAT-TTATTT
* * * * * *
1460072 CATGAGTTTTCCATTTTTTTTGGAAT-TCATCATGTTTTTGAAATACGAAATTTTTTACTTTGTA
64 CATGAGTTTTTCATTTTTTTTGAAATATCATCA--TTTTTGAAATACGAAAGTTTCTACTCTATA
*
1460136 AATGTTTTTCAGGGGTTTTCTCGGTTCAAAATTTT
127 AATGTTTTTCAGGGGTTTTCTCAGTTCAAAATTTT
* * * * *
1460171 T-AATATT-TATCAAATATTATCATTTACTTAATAGTAAATCAGTTTTGAAAAATTCATTTATTT
1 TCAAAATTCT-TCAAATATTATTATTTAATTCATATTAAATCAGTTTTG-AAAATTCATTTA-TT
*
1460234 TCATGAGTTTTTCATTTTTCCTTGAAAT
63 TCATGAGTTTTTCATTTTT-TTTGAAAT
1460262 TCTCTTATTT
Statistics
Matches: 213, Mismatches: 28, Indels: 28
0.79 0.10 0.10
Matches are distributed among these distances:
162 8 0.04
163 89 0.42
164 71 0.33
165 36 0.17
166 6 0.03
167 3 0.01
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (161 bp):
TCAAAATTCTTCAAATATTATTATTTAATTCATATTAAATCAGTTTTGAAAATTCATTTATTTCA
TGAGTTTTTCATTTTTTTTGAAATATCATCATTTTTGAAATACGAAAGTTTCTACTCTATAAATG
TTTTTCAGGGGTTTTCTCAGTTCAAAATTTT
Found at i:1462701 original size:21 final size:20
Alignment explanation
Indices: 1462652--1462735 Score: 82
Period size: 21 Copynumber: 4.1 Consensus size: 20
1462642 TCATTAGGCT
1462652 AATTGTATCGATACAATTCTG
1 AATTGTATCGATAC-ATTCTG
*
1462673 GA-TGTATCGATACATTCTAG
1 AATTGTATCGATACATTCT-G
*
1462693 AATTGTATCAATACATTCCTG
1 AATTGTATCGATACATT-CTG
* *
1462714 TATGTGTATTGATACATT-TG
1 AAT-TGTATCGATACATTCTG
1462734 AA
1 AA
1462736 GGGTAGCTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
19 5 0.10
20 16 0.31
21 17 0.33
22 14 0.27
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.39
Consensus pattern (20 bp):
AATTGTATCGATACATTCTG
Found at i:1462805 original size:20 final size:20
Alignment explanation
Indices: 1462780--1462847 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
1462770 TCACATAATT
1462780 TATCGATACATTGTAATGTG
1 TATCGATACATTGTAATGTG
* *
1462800 TATCGATACATTGCAATATG
1 TATCGATACATTGTAATGTG
* *
1462820 TATCGATACATTTTCATGTG
1 TATCGATACATTGTAATGTG
*
1462840 TATTGATA
1 TATCGATA
1462848 GAAATGAGGG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (20 bp):
TATCGATACATTGTAATGTG
Found at i:1463849 original size:153 final size:152
Alignment explanation
Indices: 1463486--1463968 Score: 454
Period size: 153 Copynumber: 3.1 Consensus size: 152
1463476 ATTTTTCTGG
* * * * * *
1463486 AACTGAGCCTTAGGTTATCATCAGGTCCACTTTTATGTCGAAA-ATGGGTATTTAGGATAAGTTC
1 AACTGAGTCTTAGGTTATCA-CAGGTTCACTTTTATG-CTAAAGGTGGATATTTAGGATAGGTTC
* * * * * *
1463550 ATCCCATCTATAATTATTTTCAAGTCCTTTAGGGGTATCAGACACTTCT-CTATCAAAGTTATCC
64 ATCCCATCTATAATCATTTTTAAGTCCTTTAGGGGTATCAG-CACTTATAC-ATCGAAGGTACCC
* * * * *
1463614 TCTACG-GGTAATTTCATAATTTTCCAA
127 CCTA-GAGGCATTTTCGTAATTTT-TAA
* * * * * *
1463641 AACTGAGTCTTAGGTTGTCACTGAGTTTACTTTTATGTTGAAGGTGGATACTTAGGATAGGTTCA
1 AACTGAGTCTTAGGTTATCACAG-GTTCACTTTTATGCTAAAGGTGGATATTTAGGATAGGTTCA
** * * * *
1463706 TCTTATCTACAATCCTTTTTAAGTCTTTTAGGGGTATTGAGCACTTATACATCGAAGGTA-CCCC
65 TCCCATCTATAATCATTTTTAAGTCCTTTAGGGGTA-TCAGCACTTATACATCGAAGGTACCCCC
1463770 TAGAGGCATTTTCGTAATTTTTAA
129 TAGAGGCATTTTCGTAATTTTTAA
* *
1463794 AACTGAGTCTTAGGTTTTCACCAGGTTCACTTTTATGCTAAAGGTGGATATTTAGGATAGGTTTA
1 AACTGAGTCTTAGGTTATCA-CAGGTTCACTTTTATGCTAAAGGTGGATATTTAGGATAGGTTCA
* * * * * *
1463859 TCCCATCTATAATCTTTTTTATGTCCTTGAGGGGTATCAGGAACTTTTACGTCGAAGGTACCCCC
65 TCCCATCTATAATCATTTTTAAGTCCTTTAGGGGTATCA-GCACTTATACATCGAAGGTACCCCC
* * *
1463924 TAGACGCATTTTTGTAATTTTTAT
129 TAGAGGCATTTTCGTAATTTTTAA
* *
1463948 AA-TCGAGTCCTAGGTCATCAC
1 AACT-GAGTCTTAGGTTATCAC
1463969 TCTTACACCA
Statistics
Matches: 267, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
152 2 0.01
153 106 0.40
154 65 0.24
155 90 0.34
156 4 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (152 bp):
AACTGAGTCTTAGGTTATCACAGGTTCACTTTTATGCTAAAGGTGGATATTTAGGATAGGTTCAT
CCCATCTATAATCATTTTTAAGTCCTTTAGGGGTATCAGCACTTATACATCGAAGGTACCCCCTA
GAGGCATTTTCGTAATTTTTAA
Found at i:1465563 original size:65 final size:66
Alignment explanation
Indices: 1465456--1465662 Score: 199
Period size: 65 Copynumber: 3.2 Consensus size: 66
1465446 AAGCAAAATA
* * * *
1465456 GATAAAGTCAACTAAAGGTGACTATGATAAAACCTAAGTCGAAAAGGGGTTGGCTAGGAT-GAAC
1 GATAAAGTCAACTAAAGGTAACTATGATAAAACCTAAGTCGAAAAAGGGTTAGCTAGGATAAAAC
1465520 T
66 T
* * *
1465521 GATAAAGTCAACTAAAGGTAACCTA-GGTGAAACCTTAA-TCGAAAAAGGGTTAGCTAGGTTAAA
1 GATAAAGTCAACTAAAGGTAA-CTATGATAAAACC-TAAGTCGAAAAAGGGTTAGCTAGGATAAA
1465584 ACT
64 ACT
* * * * * * * * * *
1465587 GATAAAGTCAACTAAAGGTGACCATGGTAGAATCTAAGTC-AAAAACGGTT-GACTTGCATGAAG
1 GATAAAGTCAACTAAAGGTAACTATGATAAAACCTAAGTCGAAAAAGGGTTAG-CTAGGATAAAA
1465650 CT
65 CT
1465652 GATAAAGTCAA
1 GATAAAGTCAA
1465663 TAAGGTTGAC
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
64 1 0.01
65 79 0.67
66 38 0.32
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (66 bp):
GATAAAGTCAACTAAAGGTAACTATGATAAAACCTAAGTCGAAAAAGGGTTAGCTAGGATAAAAC
T
Found at i:1465754 original size:130 final size:132
Alignment explanation
Indices: 1465456--1465826 Score: 310
Period size: 131 Copynumber: 2.8 Consensus size: 132
1465446 AAGCAAAATA
* * ** * * ** *
1465456 GATAAAGTCAACTAAAGGTGACTATGATAAAACCTAAGTCGAAAAGGGGTTG-GCTAGGATGAA-
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAAACGGTTGACCTA-GATGAAG
* * * * * *
1465519 CTGATAAAGTCAACTAAAGGTAACCTAGG-TGAAACCTTAA-TCGAAAAAGG-GTTAGCT-AGGT
65 CCGATAAAATCAACTAAAGTTAACCAAGGCAG-AACC-TAAGTCG-AAAAGGAGTTAACTAAGG-
** *
1465580 TAAAACT
126 CGAAGCT
* * * *
1465587 GATAAAGTCAACTAAAGGTGACCATGGTAGAATCTAAGTC-AAAAACGGTTGA-CTTGCATGAAG
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAAACGGTTGACCTAG-ATGAAG
* * * *
1465650 CTGATAAAGTCAA-TAAGGTTGACCAAGGCAGAACCTAAGTCGAAAAGGAGTTAACTAAGGCGAA
65 CCGATAAAATCAACTAAAGTTAACCAAGGCAGAACCTAAGTCGAAAAGGAGTTAACTAAGGCGAA
1465714 GCT
130 GCT
* * * * * *
1465717 GATAAAGTCAATTAATGGTGACTAAGGCGGAACCTAAGTCAAAAAAGGGTTGACCTAGGTGAAGC
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAAACGGTTGACCTAGATGAAGC
* * *
1465782 CGATAAAATTAACTAAAGTTAACTAGGGCAGAACCTAAGTCGAAA
66 CGATAAAATCAACTAAAGTTAACCAAGGCAGAACCTAAGTCGAAA
1465827 TAAAGTTGAT
Statistics
Matches: 197, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
129 10 0.05
130 77 0.39
131 79 0.40
132 31 0.16
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (132 bp):
GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAAACGGTTGACCTAGATGAAGC
CGATAAAATCAACTAAAGTTAACCAAGGCAGAACCTAAGTCGAAAAGGAGTTAACTAAGGCGAAG
CT
Found at i:1465781 original size:66 final size:65
Alignment explanation
Indices: 1465456--1466234 Score: 342
Period size: 66 Copynumber: 11.9 Consensus size: 65
1465446 AAGCAAAATA
* * ** * *
1465456 GATAAAGTCAACTAAAGGTGACTATGATAAAACCTAAGTCGAAAAGGGGTTG-GCTAGGATGAA-
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTC-AAAAAGGGTTGAGCTAGG-TGAAG
1465519 CT
64 CT
* * * *
1465521 GATAAAGTCAACTAAAGGTAACCTAGG-TGAAACCTTAA-TCGAAAAAGGGTT-AGCTAGGTTAA
1 GATAAAGTCAACTAAAGGTGACCAAGGCAG-AACC-TAAGTC-AAAAAGGGTTGAGCTAGG-TGA
*
1465583 AACT
62 AGCT
* * * * * *
1465587 GATAAAGTCAACTAAAGGTGACCATGGTAGAATCTAAGTCAAAAACGGTTGA-CTTGCATGAAGC
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAAGGGTTGAGCTAG-GTGAAGC
1465651 T
65 T
* * *
1465652 GATAAAGTCAA-T-AAGGTTGACCAAGGCAGAACCTAAGTCGAAAAGGAGTT-AACTAAGGCGAA
1 GATAAAGTCAACTAAAGG-TGACCAAGGCAGAACCTAAGTCAAAAAGG-GTTGAGCT-AGGTGAA
1465714 GCT
63 GCT
* * * * *
1465717 GATAAAGTCAATTAATGGTGACTAAGGCGGAACCTAAGTCAAAAAAGGGTTGACCTAGGTGAAGC
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTC-AAAAAGGGTTGAGCTAGGTGAAGC
*
1465782 C
65 T
* * * * * * *
1465783 GATAAAATTAACTAAAGTTAACTAGGGCAGAACCTAAGTCGAAATAA-AGTTGA--TGAGGGTGA
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTC-AAA-AAGGGTTGAGCT-A-GGTGA
*
1465845 A-AT
62 AGCT
* * * * * * * **
1465848 CAATAAAGTTAACTAAGGGTGACCAAGCCAAAATCTAAGTCGAAAAGGGGTTTTG-TAGGATGAA
1 -GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTC-AAAAAGGGTTGAGCTAGG-TGAA
*
1465912 ACT
63 GCT
* * * * * * * * * * *
1465915 AATAAAGTCAACTAAGGGTGACTAAGGCAAAATCTATGTAAAAAATGGATTG-GATAGGGCGAAA
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAA-GGGTTGAGCTA-GGTGAAG
*
1465979 CC
64 CT
* ** * * * * * * *
1465981 GATAAAGTTAACTAGGGGTGACCAAGGTAGAACCTAAATCGATAAGGGTT-AACAAAGGTGAATC
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAAGGGTTGAGC-TAGGTGAAGC
*
1466045 C
65 T
* * * * * * *
1466046 AATAAAGTCAACTAAAGTTGACCAATGCAAAATCTAAGTCGAAAAAGGGTTGA-CCATGGTGAAA
1 GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTC-AAAAAGGGTTGAGCTA-GGTGAAG
1466110 CT
64 CT
* * * * * * * *
1466112 AACAAAGTCAACTAAAGGTAACTAGGGC-GAAACTTATGTCGAGAAAA-GATTG-GCTAGGGTGA
1 GATAAAGTCAACTAAAGGTGACCAAGGCAG-AACCTAAGTC-A-AAAAGGGTTGAGCTA-GGTGA
*
1466174 AACT
62 AGCT
* * * * *
1466178 AATAAAGCCAACTAAAGGTGA-CTAGGCTAGAACCTTAGATTAAAAAGAGGTT-AGCTA
1 GATAAAGTCAACTAAAGGTGACCAAGGC-AGAACCTAAG-TCAAAAAG-GGTTGAGCTA
1466235 AGATAGAACC
Statistics
Matches: 544, Mismatches: 129, Indels: 80
0.72 0.17 0.11
Matches are distributed among these distances:
63 4 0.01
64 27 0.05
65 158 0.29
66 322 0.59
67 33 0.06
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (65 bp):
GATAAAGTCAACTAAAGGTGACCAAGGCAGAACCTAAGTCAAAAAGGGTTGAGCTAGGTGAAGCT
Found at i:1466211 original size:197 final size:196
Alignment explanation
Indices: 1465840--1466212 Score: 425
Period size: 197 Copynumber: 1.9 Consensus size: 196
1465830 AGTTGATGAG
* * * ****
1465840 GGTGAAATCAATAAAGTTAACTAAGGGTGACCAAGCCAAAATCTAAGTCGAAAAGGGGTTTTGTA
1 GGTGAAATCAATAAAGTCAACTAAAGGTGACCAAGCCAAAATCTAAGTCGAAAAAGGGTTGACCA
* * *
1465905 GGATGAAACTAATAAAGTCAACTAAGGGTGACTAAGGCAAAATCTATGTAAAAAATGGATTGGAT
66 GGATGAAACTAACAAAGTCAACTAAAGGTAACTAAGGCAAAATCTATGTAAAAAA-GGATTGGAT
* ** **
1465970 AGGGCGAAACCGATAAAGTTAACTAGGGGTGACCAAGGTAGAACCTAAATCGATAAGGGTTAACA
130 AGGGCGAAACCAATAAAGCCAACTAAAGGTGACCAAGGTAGAACCTAAATCGATAAGGGTTAACA
1466035 AA
195 AA
*
1466037 GGTG-AATCCAATAAAGTCAACTAAAGTTGACCAATG-CAAAATCTAAGTCGAAAAAGGGTTGAC
1 GGTGAAAT-CAATAAAGTCAACTAAAGGTGACCAA-GCCAAAATCTAAGTCGAAAAAGGGTTGAC
* * *
1466100 CATGG-TGAAACTAACAAAGTCAACTAAAGGTAACTAGGGCGAAA-CTTATGTCGAGAAAA-GAT
64 CA-GGATGAAACTAACAAAGTCAACTAAAGGTAACTAAGGCAAAATC-TATGT--AAAAAAGGAT
* * * *
1466162 TGGCTAGGGTGAAACTAATAAAGCCAACTAAAGGTGA-CTAGGCTAGAACCT
125 TGGATAGGGCGAAACCAATAAAGCCAACTAAAGGTGACCAAGG-TAGAACCT
1466213 TAGATTAAAA
Statistics
Matches: 146, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
196 8 0.05
197 130 0.89
198 3 0.02
199 5 0.03
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (196 bp):
GGTGAAATCAATAAAGTCAACTAAAGGTGACCAAGCCAAAATCTAAGTCGAAAAAGGGTTGACCA
GGATGAAACTAACAAAGTCAACTAAAGGTAACTAAGGCAAAATCTATGTAAAAAAGGATTGGATA
GGGCGAAACCAATAAAGCCAACTAAAGGTGACCAAGGTAGAACCTAAATCGATAAGGGTTAACAA
A
Found at i:1466316 original size:31 final size:31
Alignment explanation
Indices: 1466281--1466390 Score: 89
Period size: 31 Copynumber: 3.5 Consensus size: 31
1466271 GAAACCAATA
*
1466281 AAGTCAACTAAAGGTGACTAAGGCAAAACCT
1 AAGTCAACAAAAGGTGACTAAGGCAAAACCT
* *
1466312 AAGTCAA-AAAAGGGTTGACTATGGCAAAATCAAT
1 AAGTCAACAAAA-GG-TGACTAAGGCAAAA-C-CT
* * * * *
1466346 AAAGTCAACCAAGGGTGATTAAGGTAGAACCT
1 -AAGTCAACAAAAGGTGACTAAGGCAAAACCT
1466378 AAGTCAA-AAAAGG
1 AAGTCAACAAAAGG
1466391 GTTGAGTTAG
Statistics
Matches: 61, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
30 7 0.11
31 16 0.26
32 14 0.23
33 2 0.03
34 11 0.18
35 9 0.15
36 2 0.03
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (31 bp):
AAGTCAACAAAAGGTGACTAAGGCAAAACCT
Found at i:1466338 original size:32 final size:32
Alignment explanation
Indices: 1466295--1466395 Score: 105
Period size: 32 Copynumber: 3.1 Consensus size: 32
1466285 CAACTAAAGG
1466295 TGACTAAGGCAAAACCTAAGTCAAAAAAGGGT
1 TGACTAAGGCAAAACCTAAGTCAAAAAAGGGT
* * **
1466327 TGACTATGGCAAAATCAATAAAGTCAACCAAGGG-
1 TGACTAAGGCAAAA-C-CT-AAGTCAAAAAAGGGT
* * *
1466361 TGATTAAGGTAGAACCTAAGTCAAAAAAGGGT
1 TGACTAAGGCAAAACCTAAGTCAAAAAAGGGT
1466393 TGA
1 TGA
1466396 GTTAGGTGAA
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
31 12 0.22
32 17 0.31
33 2 0.04
34 11 0.20
35 12 0.22
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.19
Consensus pattern (32 bp):
TGACTAAGGCAAAACCTAAGTCAAAAAAGGGT
Found at i:1466360 original size:35 final size:34
Alignment explanation
Indices: 1466265--1466361 Score: 94
Period size: 32 Copynumber: 2.9 Consensus size: 34
1466255 AGGGATTGGA
*
1466265 TATGGCGAAACCAATAAAGTCAACTAAA-GG-TGAC
1 TATGGC-AAAACAATAAAGTCAAC-AAAGGGTTGAC
* * *
1466299 TAAGGCAAAAC-CT-AAGTCAAAAAAGGGTTGAC
1 TATGGCAAAACAATAAAGTCAACAAAGGGTTGAC
*
1466331 TATGGCAAAATCAATAAAGTCAACCAAGGGT
1 TATGGCAAAA-CAATAAAGTCAACAAAGGGT
1466362 GATTAAGGTA
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
30 3 0.06
31 9 0.18
32 14 0.28
33 5 0.10
34 6 0.12
35 13 0.26
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.18
Consensus pattern (34 bp):
TATGGCAAAACAATAAAGTCAACAAAGGGTTGAC
Found at i:1466391 original size:31 final size:31
Alignment explanation
Indices: 1466293--1466392 Score: 101
Period size: 31 Copynumber: 3.1 Consensus size: 31
1466283 GTCAACTAAA
1466293 GGTGACTAAGGCAAAACCTAAGTCAAAAAAG
1 GGTGACTAAGGCAAAACCTAAGTCAAAAAAG
* * **
1466324 GGTTGACTATGGCAAAATCAATAAAGTCAACCAAG
1 GG-TGACTAAGGCAAAA-C-CT-AAGTCAAAAAAG
* * *
1466359 GGTGATTAAGGTAGAACCTAAGTCAAAAAAG
1 GGTGACTAAGGCAAAACCTAAGTCAAAAAAG
1466390 GGT
1 GGT
1466393 TGAGTTAGGT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
31 15 0.28
32 14 0.26
33 2 0.04
34 11 0.20
35 12 0.22
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.18
Consensus pattern (31 bp):
GGTGACTAAGGCAAAACCTAAGTCAAAAAAG
Found at i:1466439 original size:65 final size:65
Alignment explanation
Indices: 1466232--1466477 Score: 239
Period size: 66 Copynumber: 3.7 Consensus size: 65
1466222 AAGAGGTTAG
* ** * *
1466232 CTAAGATAGAACCTAAGT-TGAAAAGGGATTGGA-TATGGCGAAACCAATAAAGTCAACTAAAGG
1 CTAAGGTAGAACCTAAGTCAAAAAAGGG-TT-GACTA-GGTGAAATCAATAAAGTCAACTAAAGG
1466295 TGA
63 TGA
* * ** * *
1466298 CTAAGGCAAAACCTAAGTCAAAAAAGGGTTGACTATGGCAAAATCAATAAAGTCAACCAAGGGTG
1 CTAAGGTAGAACCTAAGTCAAAAAAGGGTTGACTA-GGTGAAATCAATAAAGTCAACTAAAGGTG
1466363 A
65 A
* * * *
1466364 TTAAGGTAGAACCTAAGTCAAAAAAGGGTTGAGTTAGGTGAATTCGAT-AAGTCAACTAAAGGTG
1 CTAAGGTAGAACCTAAGTCAAAAAAGGGTTGA-CTAGGTGAAATCAATAAAGTCAACTAAAGGTG
1466428 A
65 A
* * *
1466429 CTATGATAGAACGTAAGTC-AAAAAGAGGTTGACCTAGGTGAAATCAATA
1 CTAAGGTAGAACCTAAGTCAAAAAAG-GGTTGA-CTAGGTGAAATCAATA
1466478 TAATTTACTA
Statistics
Matches: 148, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
64 6 0.04
65 50 0.34
66 83 0.56
67 9 0.06
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.21
Consensus pattern (65 bp):
CTAAGGTAGAACCTAAGTCAAAAAAGGGTTGACTAGGTGAAATCAATAAAGTCAACTAAAGGTGA
Found at i:1466941 original size:66 final size:65
Alignment explanation
Indices: 1466796--1467120 Score: 233
Period size: 66 Copynumber: 5.0 Consensus size: 65
1466786 ATGGTTAACG
* * * * **
1466796 AGGGTGAAACTGATAATGTCAACTAAAGGT-GCCAAGGCAGAACCTAAGTCAAAAAAAGGTTGAC
1 AGGGTAAAACTGATAAAGTCAACT-AAGGTGGCCAAGGTAGAACCTAAGTCGAAAAGGGGTTGAC
*
1466860 T
65 C
* * * * *
1466861 AGGGTAAAATTGATAAAGTCAACTAAGTGTGGCGATGGTGGAACCCAAGTCGAAAAGGGGTTGAC
1 AGGGTAAAACTGATAAAGTCAACTAAG-GTGGCCAAGGTAGAACCTAAGTCGAAAAGGGGTTGAC
1466926 C
65 C
** * * * *
1466927 AGGGCGAAACTGATAAAGTTAACTAAGGATGACCAGGGTAGAACCTAAGTTGAAAAGGGGTTGAC
1 AGGGTAAAACTGATAAAGTCAACTAAGG-TGGCCAAGGTAGAACCTAAGTCGAAAAGGGGTTGAC
1466992 C
65 C
* * * ** * * ** *
1466993 AGGGAAAAACTAATAAAGTTAACT-AGG-GGGAATAGGGTGGAATCTAAGTAAAAAAGGGCTTGA
1 AGGGTAAAACTGATAAAGTCAACTAAGGTGGCCA-A-GGTAGAACCTAAGTCGAAAAGGGGTTGA
*
1467056 CT
64 CC
* * * * * * * * *
1467058 AGGGCAAAACCGATAATGTCAACTAAAGATGACCAGGGTGGAATCTAAGTCGAAAATGGGTTG
1 AGGGTAAAACTGATAAAGTCAACT-AAGGTGGCCAAGGTAGAACCTAAGTCGAAAAGGGGTTG
1467121 TATTGTAACA
Statistics
Matches: 203, Mismatches: 49, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
63 2 0.01
64 3 0.01
65 70 0.34
66 124 0.61
67 2 0.01
68 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.19
Consensus pattern (65 bp):
AGGGTAAAACTGATAAAGTCAACTAAGGTGGCCAAGGTAGAACCTAAGTCGAAAAGGGGTTGACC
Found at i:1467082 original size:65 final size:65
Alignment explanation
Indices: 1466961--1467082 Score: 145
Period size: 65 Copynumber: 1.9 Consensus size: 65
1466951 AAGGATGACC
** * * *
1466961 AGGGTAGAACCTAAGTTGAAAAGGGGTTGACCAGGGAAAAACTAATAAAGTTAACTAGGGGGAAT
1 AGGGTAGAACCTAAGTAAAAAAGGGCTTGACCAGGGAAAAACCAATAAAGTCAACTAGGGGGAAT
* * * * * *
1467026 AGGGTGGAATCTAAGTAAAAAAGGGCTTGACTAGGGCAAAACCGATAATGTCAACTA
1 AGGGTAGAACCTAAGTAAAAAAGGGCTTGACCAGGGAAAAACCAATAAAGTCAACTA
1467083 AAGATGACCA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
65 46 1.00
ACGTcount: A:0.41, C:0.11, G:0.29, T:0.19
Consensus pattern (65 bp):
AGGGTAGAACCTAAGTAAAAAAGGGCTTGACCAGGGAAAAACCAATAAAGTCAACTAGGGGGAAT
Found at i:1471867 original size:107 final size:108
Alignment explanation
Indices: 1471656--1471870 Score: 238
Period size: 107 Copynumber: 2.0 Consensus size: 108
1471646 CGAGTTAACT
* * * * * * *
1471656 ATTTAGAGGGGTTGACTAGGACAAAACTATATAAGTCAACAAAAGGTAACTTGGATGAAACCTAA
1 ATTTAGAGGAGTTGACAAGGAAAAAACCATACAAGTCAACAAAAAGTAACTAGGATGAAACCTAA
* * * *
1471721 GTGAAGAATGTGTTAGCCAGGATAAAACGATATAGACCAATAA
66 GTGAAGAAGGAGTTAGCCAGGATAAAACCATAGAGACCAATAA
* *
1471764 ATTTA-AGGAGTTGACAAGGAAAAAACCATACAAGTCAACAAAAAGTACCTAGGGTGAAACCTAA
1 ATTTAGAGGAGTTGACAAGGAAAAAACCATACAAGTCAACAAAAAGTAACTAGGATGAAACCTAA
* ** *
1471828 GTCGTA-AAGGAGTTAGCTGGGATGAAACCATACGA-ACCAATAA
66 GT-GAAGAAGGAGTTAGCCAGGATAAAACCATA-GAGACCAATAA
1471871 GTTTCAAAGT
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
107 80 0.91
108 8 0.09
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (108 bp):
ATTTAGAGGAGTTGACAAGGAAAAAACCATACAAGTCAACAAAAAGTAACTAGGATGAAACCTAA
GTGAAGAAGGAGTTAGCCAGGATAAAACCATAGAGACCAATAA
Found at i:1472271 original size:41 final size:40
Alignment explanation
Indices: 1472136--1472810 Score: 324
Period size: 41 Copynumber: 16.8 Consensus size: 40
1472126 TTAAAAAGGA
* * * * *
1472136 TTGAACAAGGCTAAACCATTTCAGTTAACAAGTTAGAGGGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAA-ATAGAGAGG
* * *
1472177 TT-CCTCAAAGCTAAACCATTACAGTCAACTAA-AGA-AGGG
1 TTGAC-CAAGGCTAAACCATTACAGTCAACAAATAGAGA-GG
* * * * *
1472216 TTGACTAGGGCTAAACCATTACAATCAACAAGTTTGAGAGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAA-ATAGAGAGG
*
1472257 TTGACCAAGGCTAAACCATTATAGTCAACTAAAATAG-G-GG
1 TTGACCAAGGCTAAACCATTACAGTCAAC--AAATAGAGAGG
* * *
1472297 TTGACCAAGGCTAAACCATTATAGTCAACAAGTTAGAGGGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAA-ATAGAGAGG
* * * * * *
1472338 TTAACTAGGGGTAAACCATTATAGTCAACTAAATAAAG-GG
1 TTGACCAAGGCTAAACCATTACAGTCAAC-AAATAGAGAGG
* * * * * *
1472378 TTGA-CAGGGCTAAACCATTAAAATCACCAAAAAGAAAGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAAATAGAGAGG
* * * *
1472417 TTGACCAAGGCTAAATCATTACAGTTAATAAA-AGAAAAGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAAATAG-AGAGG
* * * *
1472457 TTGACCAAGGCTAAACCGA-TACAGCCAACAAGTTCGAGGGG
1 TTGACCAAGGCTAAACC-ATTACAGTCAACAA-ATAGAGAGG
** * * * * * * *
1472498 TTGATTAGGGTTAAACCATTATAGTCAATAAGTGAAAGGGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAAAT-AGAGAGG
* ** * * *
1472539 TTAATTAGGGCTAAACCATTACAGTCAATAAAAAGA-AGAG
1 TTGACCAAGGCTAAACCATTACAGTCAACAAATAGAGAG-G
* *** *
1472579 -TCAAGTAGGCTAAACCATTA-ATGTCAACAAGTTAGA-AGGG
1 TTGACCAAGGCTAAACCATTACA-GTCAACAA-ATAGAGA-GG
* * * * * *
1472619 TTAACTAGGGCTAAACCATTACAATTAACAAGTTAGA-AGGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAA-ATAGAGA-GG
* * * * * * * *
1472660 TTGATCAGGGATAAACTATTACATTCAATTAAA-AAAAAGG
1 TTGACCAAGGCTAAACCATTACAGTCAA-CAAATAGAGAGG
* *
1472700 TTGA-CAAGGGCTAAACCATTATAGTCAACAAAAAGA-ATGG
1 TTGACCAA-GGCTAAACCATTACAGTCAACAAATAGAGA-GG
* * *
1472740 TTGACTAGGGCTAAACCATTACAGTCAACAAAAAGA-ATGG
1 TTGACCAAGGCTAAACCATTACAGTCAACAAATAGAGA-GG
* *
1472780 TTGACCAGGGCTAAACCATTACAGTTAACAA
1 TTGACCAAGGCTAAACCATTACAGTCAACAA
1472811 GTTAGAAGGG
Statistics
Matches: 495, Mismatches: 107, Indels: 65
0.74 0.16 0.10
Matches are distributed among these distances:
38 8 0.02
39 87 0.18
40 190 0.38
41 199 0.40
42 9 0.02
43 2 0.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.22
Consensus pattern (40 bp):
TTGACCAAGGCTAAACCATTACAGTCAACAAATAGAGAGG
Found at i:1472277 original size:80 final size:79
Alignment explanation
Indices: 1472127--1472835 Score: 454
Period size: 80 Copynumber: 8.8 Consensus size: 79
1472117 AAACCTAAGT
* * * * * * * *
1472127 TAAA-AAGGATTGAACAAGGCTAAACCATTTCAGTTAACAAGTTAGAGGGGTT-CCTCAAAGCTA
1 TAAAGAAGGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGA-AGGTTGAC-CAAGGCTA
1472190 AACCATTACAGTCAAC
64 AACCATTACAGTCAAC
* * *
1472206 TAAAGAAGGGTTGACTAGGGCTAAACCATTACAATCAACAAGTTTGAGAGGTTGACCAAGGCTAA
1 TAAAGAAGGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGA-AGGTTGACCAAGGCTAA
*
1472271 ACCATTATAGTCAAC
65 ACCATTACAGTCAAC
* * * * * * *
1472286 TAAA-ATAGGGGTTGACCAAGGCTAAACCATTATAGTCAACAAGTTAGAGGGGTTAACTAGGGGT
1 TAAAGA-A-GGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGA-AGGTTGACCAAGGCT
*
1472350 AAACCATTATAGTCAAC
63 AAACCATTACAGTCAAC
* * * * **
1472367 TAAATAAAGGGTTGA-CAGGGCTAAACCATTAAAATCACCAA-AAAGAAAGGTTGACCAAGGCTA
1 TAAA-GAAGGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAG-AAGGTTGACCAAGGCTA
* *
1472430 AATCATTACAGTTAA-
64 AACCATTACAGTCAAC
* * * * * ** * *
1472445 TAAAAGAAAAGGTTGACCAAGGCTAAACCGA-TACAGCCAACAAGTTCGAGGGGTTGATTAGGGT
1 T-AAAG-AAGGGTTGACCAGGGCTAAACC-ATTACAGTCAACAAGTTAGA-AGGTTGACCAAGGC
*
1472509 TAAACCATTATAGTCAA-
62 TAAACCATTACAGTCAAC
* * ** * ** * ***
1472526 TAAGTGAAAGGGGTTAATTAGGGCTAAACCATTACAGTCAATAA-AAAGAAGAG-TCAAGTAGGC
1 TAA-AG-AA-GGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGAAG-GTTGACCAAGGC
1472589 TAAACCATTA-ATGTCAAC
62 TAAACCATTACA-GTCAAC
* * * * * * *
1472607 -AAGTTAGAAGGGTTAACTAGGGCTAAACCATTACAATTAACAAGTTAGAAGGGTTGATCAGGGA
1 TAA---AGAAGGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGAA-GGTTGACCAAGGC
* * *
1472671 TAAACTATTACATTCAAT
62 TAAACCATTACAGTCAAC
* * * * ** * *
1472689 TAAAAAAAAGGTTGACAAGGGCTAAACCATTATAGTCAACAA-AAAGAATGGTTGACTAGGGCTA
1 T-AAAGAAGGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGAA-GGTTGACCAAGGCTA
1472753 AACCATTACAGTCAAC
64 AACCATTACAGTCAAC
* * * * *
1472769 AAAAAGAATGGTTGACCAGGGCTAAACCATTACAGTTAACAAGTTAGAAGGGTTAACTAAGGCTA
1 -TAAAGAAGGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGAA-GGTTGACCAAGGCTA
1472834 AA
64 AA
1472836 AACTAAAAGA
Statistics
Matches: 485, Mismatches: 116, Indels: 56
0.74 0.18 0.09
Matches are distributed among these distances:
78 1 0.00
79 42 0.09
80 227 0.47
81 166 0.34
82 45 0.09
83 2 0.00
84 2 0.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (79 bp):
TAAAGAAGGGTTGACCAGGGCTAAACCATTACAGTCAACAAGTTAGAAGGTTGACCAAGGCTAAA
CCATTACAGTCAAC
Found at i:1472661 original size:121 final size:121
Alignment explanation
Indices: 1472144--1472804 Score: 451
Period size: 121 Copynumber: 5.5 Consensus size: 121
1472134 GATTGAACAA
* * * * ** ** *
1472144 GGCTAAACCATTTCAGTTAACAAGTTAGAGGGGTTCCTCAAAGCTAAACCATTACAGTCAACT-A
1 GGCTAAACCATTACAGTCAACAAGTAAGAAGGGTTGATCAGGGCTAAACCATTACAGTCAATTAA
* * * * * * * *
1472208 AAGAAGGGTTGACTAGGGCTAAACCATTACAATCAACAAGTTTG-AGAGGTTGACCAA
66 AAAAAAGGTT-ACAAGGGCTAAACCATTATAGTCAACAAGTTAGAAG-GGTTGACTAG
* * * * * * *
1472265 GGCTAAACCATTATAGTCAACTAA--AATAGGGGTTGACCAAGGCTAAACCATTATAGTCAA-CA
1 GGCTAAACCATTACAGTCAAC-AAGTAAGAAGGGTTGATCAGGGCTAAACCATTACAGTCAATTA
* * ** * * *
1472327 AGTTAGAGGGGTTAACTAGGGGTAAACCATTATAGTCAACTAA-ATA-AAGGGTTGAC-AG
65 A--AAAAAAGGTT-ACAAGGGCTAAACCATTATAGTCAAC-AAGTTAGAAGGGTTGACTAG
* * * * * * * * *
1472385 GGCTAAACCATTAAAATCACCAA-AAAGAAAGGTTGACCAAGGCTAAATCATTACAGTTAA-TAA
1 GGCTAAACCATTACAGTCAACAAGTAAGAAGGGTTGATCAGGGCTAAACCATTACAGTCAATTAA
* * * * *
1472448 AAGAAAAGGTTGACCAA-GGCTAAACCGA-TACAGCCAACAAGTTCGAGGGGTTGATTAG
66 AA-AAAAGGTT-A-CAAGGGCTAAACC-ATTATAGTCAACAAGTTAGAAGGGTTGACTAG
* * * * * *
1472506 GGTTAAACCATTATAGTCAATAAGTGAA-AGGGGTTAATTAGGGCTAAACCATTACAGTCAA-TA
1 GGCTAAACCATTACAGTCAACAAGT-AAGAAGGGTTGATCAGGGCTAAACCATTACAGTCAATTA
* *
1472569 AAAAGAAGAG-T-CAAGTAGGCTAAACCATTA-ATGTCAACAAGTTAGAAGGGTTAACTAG
65 AAAAAAAG-GTTACAAG--GGCTAAACCATTATA-GTCAACAAGTTAGAAGGGTTGACTAG
* * * * * *
1472627 GGCTAAACCATTACAATTAACAAGTTAGAAGGGTTGATCAGGGATAAACTATTACATTCAATTAA
1 GGCTAAACCATTACAGTCAACAAGTAAGAAGGGTTGATCAGGGCTAAACCATTACAGTCAATTAA
** *
1472692 AAAAAAGGTTGACAAGGGCTAAACCATTATAGTCAACAA-AAAGAATGGTTGACTAG
66 AAAAAAGGTT-ACAAGGGCTAAACCATTATAGTCAACAAGTTAGAAGGGTTGACTAG
* * *
1472748 GGCTAAACCATTACAGTCAACAA-AAAGAATGGTTGACCAGGGCTAAACCATTACAGT
1 GGCTAAACCATTACAGTCAACAAGTAAGAAGGGTTGATCAGGGCTAAACCATTACAGT
1472805 TAACAAGTTA
Statistics
Matches: 424, Mismatches: 89, Indels: 55
0.75 0.16 0.10
Matches are distributed among these distances:
118 6 0.01
119 25 0.06
120 122 0.29
121 164 0.39
122 98 0.23
123 5 0.01
124 4 0.01
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (121 bp):
GGCTAAACCATTACAGTCAACAAGTAAGAAGGGTTGATCAGGGCTAAACCATTACAGTCAATTAA
AAAAAAGGTTACAAGGGCTAAACCATTATAGTCAACAAGTTAGAAGGGTTGACTAG
Found at i:1472799 original size:161 final size:160
Alignment explanation
Indices: 1472131--1472822 Score: 653
Period size: 161 Copynumber: 4.3 Consensus size: 160
1472121 CTAAGTTAAA
* * * ** ** *
1472131 AAGGATTGAACAAGGCTAAACCATTTCAGTTAACAAGTTAGAGGGGTTCCTCAAAGCTAAACCAT
1 AAGGGTTGACCAAGGCTAAACCATTACAGTTAACAAGTTAGAGGGGTTGATCAGGGATAAACCAT
* ***
1472196 TACAGTCAACT-AAAGAAGGGTTGACTAGGGCTAAACCATTACAATCAACAAGTTTGAGAGGTTG
66 TACAGTCAACTAAAAAAAGGGTTGACTAGGGCTAAACCATTACAATCAACAA-AAAGA-AGGTTG
* * *
1472260 ACCAAGGCTAAACCATTATAGTCAACTAAAAT
129 ACCAAGGCTAAACCATTACAGTCAACAAAAAG
* * * * *
1472292 AGGGGTTGACCAAGGCTAAACCATTATAGTCAACAAGTTAGAGGGGTT-AACTAGGGGTAAACCA
1 AAGGGTTGACCAAGGCTAAACCATTACAGTTAACAAGTTAGAGGGGTTGATC-AGGGATAAACCA
* * * *
1472356 TTATAGTCAACTAAATAAAGGGTTGAC-AGGGCTAAACCATTAAAATCACCAAAAAGAAAGGTTG
65 TTACAGTCAACTAAAAAAAGGGTTGACTAGGGCTAAACCATTACAATCAACAAAAAG-AAGGTTG
* * *
1472420 ACCAAGGCTAAATCATTACAGTTAA-TAAAAG
129 ACCAAGGCTAAACCATTACAGTCAACAAAAAG
* ** * * *
1472451 AAAAGGTTGACCAAGGCTAAACCGA-TACAGCCAACAAGTTCGAGGGGTTGATTAGGGTTAAACC
1 -AAGGGTTGACCAAGGCTAAACC-ATTACAGTTAACAAGTTAGAGGGGTTGATCAGGGATAAACC
* * * * * * *
1472515 ATTATAGTCAA-TAAGTGAAAGGGGTTAATTAGGGCTAAACCATTACAGTCAATAAAAAGAAGAG
64 ATTACAGTCAACTAA--AAAAAGGGTTGACTAGGGCTAAACCATTACAATCAACAAAAAGAAG-G
* *** **
1472579 -TCAAGTAGGCTAAACCATTA-ATGTCAACAAGTTAG
126 TTGACCAAGGCTAAACCATTACA-GTCAACAA-AAAG
* * * * * *
1472614 AAGGGTTAACTAGGGCTAAACCATTACAATTAACAAGTTAGAAGGGTTGATCAGGGATAAACTAT
1 AAGGGTTGACCAAGGCTAAACCATTACAGTTAACAAGTTAGAGGGGTTGATCAGGGATAAACCAT
* * * * * *
1472679 TACATTCAATTAAAAAAAAGGTTGACAAGGGCTAAACCATTATAGTCAACAAAAAGAATGGTTGA
66 TACAGTCAACTAAAAAAAGGGTTGACTAGGGCTAAACCATTACAATCAACAAAAAGAA-GGTTGA
* *
1472744 CTAGGGCTAAACCATTACAGTCAACAAAAAG
130 CCAAGGCTAAACCATTACAGTCAACAAAAAG
* * *
1472775 AATGGTTGACCAGGGCTAAACCATTACAGTTAACAAGTTAGAAGGGTT
1 AAGGGTTGACCAAGGCTAAACCATTACAGTTAACAAGTTAGAGGGGTT
1472823 AACTAAGGCT
Statistics
Matches: 431, Mismatches: 82, Indels: 36
0.79 0.15 0.07
Matches are distributed among these distances:
159 8 0.02
160 93 0.22
161 203 0.47
162 121 0.28
163 6 0.01
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.22
Consensus pattern (160 bp):
AAGGGTTGACCAAGGCTAAACCATTACAGTTAACAAGTTAGAGGGGTTGATCAGGGATAAACCAT
TACAGTCAACTAAAAAAAGGGTTGACTAGGGCTAAACCATTACAATCAACAAAAAGAAGGTTGAC
CAAGGCTAAACCATTACAGTCAACAAAAAG
Found at i:1472810 original size:40 final size:40
Alignment explanation
Indices: 1472186--1472810 Score: 417
Period size: 40 Copynumber: 15.6 Consensus size: 40
1472176 GTTCCTCAAA
* *
1472186 GCTAAACCATTACAGTCAAC-TAAAGAAGGGTTGACTAGG
1 GCTAAACCATTACAGTCAACAAAAAGAAGGGTTGACCAGG
* *** *
1472225 GCTAAACCATTACAATCAACAAGTTTG-AGAGGTTGACCAAG
1 GCTAAACCATTACAGTCAACAA-AAAGAAG-GGTTGACCAGG
* * * * *
1472266 GCTAAACCATTATAGTCAACTAAAATAGGGGTTGACCAAG
1 GCTAAACCATTACAGTCAACAAAAAGAAGGGTTGACCAGG
* ** * * *
1472306 GCTAAACCATTATAGTCAACAAGTTAGAGGGGTTAACTAGG
1 GCTAAACCATTACAGTCAACAA-AAAGAAGGGTTGACCAGG
* * *
1472347 GGTAAACCATTATAGTCAACTAAATA-AAGGGTTGA-CAGG
1 GCTAAACCATTACAGTCAAC-AAAAAGAAGGGTTGACCAGG
* * * * *
1472386 GCTAAACCATTAAAATCACCAAAAAGAAAGGTTGACCAAG
1 GCTAAACCATTACAGTCAACAAAAAGAAGGGTTGACCAGG
* * * * *
1472426 GCTAAATCATTACAGTTAA-TAAAAGAAAAGGTTGACCAAG
1 GCTAAACCATTACAGTCAACAAAAAG-AAGGGTTGACCAGG
* *** * **
1472466 GCTAAACCGA-TACAGCCAACAAGTTCGAGGGGTTGATTAGG
1 GCTAAACC-ATTACAGTCAACAA-AAAGAAGGGTTGACCAGG
* * * * **
1472507 GTTAAACCATTATAGTCAATAAGTGAAAG--GGGTTAATTAGG
1 GCTAAACCATTACAGTCAACAA---AAAGAAGGGTTGACCAGG
* * ** **
1472548 GCTAAACCATTACAGTCAATAAAAAGAAGAGTCAAGTA-G
1 GCTAAACCATTACAGTCAACAAAAAGAAGGGTTGACCAGG
** * *
1472587 GCTAAACCATTA-ATGTCAACAAGTTAGAAGGGTTAACTAGG
1 GCTAAACCATTACA-GTCAACAA-AAAGAAGGGTTGACCAGG
* * ** *
1472628 GCTAAACCATTACAATTAACAAGTTAGAAGGGTTGATCAGG
1 GCTAAACCATTACAGTCAACAA-AAAGAAGGGTTGACCAGG
* * * * * *
1472669 GATAAACTATTACATTCAATTAAAAA-AAAGGTTGACAAGG
1 GCTAAACCATTACAGTCAA-CAAAAAGAAGGGTTGACCAGG
* * *
1472709 GCTAAACCATTATAGTCAACAAAAAGAATGGTTGACTAGG
1 GCTAAACCATTACAGTCAACAAAAAGAAGGGTTGACCAGG
*
1472749 GCTAAACCATTACAGTCAACAAAAAGAATGGTTGACCAGG
1 GCTAAACCATTACAGTCAACAAAAAGAAGGGTTGACCAGG
*
1472789 GCTAAACCATTACAGTTAACAA
1 GCTAAACCATTACAGTCAACAA
1472811 GTTAGAAGGG
Statistics
Matches: 467, Mismatches: 96, Indels: 45
0.77 0.16 0.07
Matches are distributed among these distances:
38 9 0.02
39 76 0.16
40 202 0.43
41 172 0.37
42 6 0.01
43 2 0.00
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (40 bp):
GCTAAACCATTACAGTCAACAAAAAGAAGGGTTGACCAGG
Found at i:1473905 original size:118 final size:118
Alignment explanation
Indices: 1473766--1473988 Score: 356
Period size: 118 Copynumber: 1.9 Consensus size: 118
1473756 TAGTAAAGAG
1473766 GCAAATACACTCAAAACAAGGCAAATGCAAATCTCATCTAATGGTATAGACACACATTAAATAAT
1 GCAAATACACTCAAAACAAGGCAAATGCAAATCTCATCTAATGGTATAGACACACATTAAATAAT
* *
1473831 GTAAATTAAAGCATCAGTAAAGTGGCAAATGCATAAGAAATGATAGCATAGAT
66 GTAAATGAAAACATCAGTAAAGTGGCAAATGCATAAGAAATGATAGCATAGAT
** * ** * *
1473884 GCAAATACACTCAAAACAAGGCAAATGTGAATGTCATCTAATGGTATAGATGCACATTAGATGAT
1 GCAAATACACTCAAAACAAGGCAAATGCAAATCTCATCTAATGGTATAGACACACATTAAATAAT
*
1473949 GTAAATGAAAACATCAGTAAAGTGGCAAATGCATATGAAA
66 GTAAATGAAAACATCAGTAAAGTGGCAAATGCATAAGAAA
1473989 CGATGTAAAT
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
118 95 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.22
Consensus pattern (118 bp):
GCAAATACACTCAAAACAAGGCAAATGCAAATCTCATCTAATGGTATAGACACACATTAAATAAT
GTAAATGAAAACATCAGTAAAGTGGCAAATGCATAAGAAATGATAGCATAGAT
Found at i:1474642 original size:93 final size:93
Alignment explanation
Indices: 1474483--1474665 Score: 228
Period size: 93 Copynumber: 2.0 Consensus size: 93
1474473 ATAAAATACG
*
1474483 AATTTCTTTGAAAATCAGACAAATTTGATGCCACTGACTCAAAAGTTTCAAAACTAATAAGATAC
1 AATTTCTTTGAAAATCAGACAAATTTGAAGCCACTGACTCAAAAGTTTCAAAACTAATAAGATAC
* *
1474548 ATATCCC-ATTTTCCTAGGCATGAATATT
66 AT-GCCCTATTTTCCTAGGCACGAATATT
* * * * * * *
1474576 AATTTCTTTGAAAATCTA-ACAAATTTGAAGCTATTTG-TTCAAAATTTTCAAAATTGATAGGAT
1 AATTTCTTTGAAAATC-AGACAAATTTGAAGCCA-CTGACTCAAAAGTTTCAAAACTAATAAGAT
1474639 ACATGCCCTATTTTCCTAGGCACGAAT
64 ACATGCCCTATTTTCCTAGGCACGAAT
1474666 GAATTAAGAC
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
92 3 0.04
93 71 0.92
94 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (93 bp):
AATTTCTTTGAAAATCAGACAAATTTGAAGCCACTGACTCAAAAGTTTCAAAACTAATAAGATAC
ATGCCCTATTTTCCTAGGCACGAATATT
Found at i:1475270 original size:19 final size:19
Alignment explanation
Indices: 1475230--1475276 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
1475220 AGCATACAAC
**
1475230 TTTCTCATTTCCTCATTTT
1 TTTCTCATTTCCTCATCAT
*
1475249 TTTCTTATTTCCTCATCAT
1 TTTCTCATTTCCTCATCAT
1475268 TTT-TCATTT
1 TTTCTCATTT
1475277 TTCTCTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTCTCATTTCCTCATCAT
Found at i:1475357 original size:13 final size:13
Alignment explanation
Indices: 1475326--1475367 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
1475316 TTCATGCTTC
*
1475326 TTTTGTTTTTT-T
1 TTTTCTTTTTTAT
*
1475338 TTCTCTTTTTTAT
1 TTTTCTTTTTTAT
1475351 TTTTCTTTTTTAT
1 TTTTCTTTTTTAT
1475364 TTTT
1 TTTT
1475368 TTTGTTTCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.05, C:0.07, G:0.02, T:0.86
Consensus pattern (13 bp):
TTTTCTTTTTTAT
Found at i:1475369 original size:15 final size:14
Alignment explanation
Indices: 1475323--1475369 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 14
1475313 CATTTCATGC
1475323 TTCTTTTGTTTTTTT
1 TTCTTTT-TTTTTTT
*
1475338 TTCTCTTTTTTATTT
1 TTCT-TTTTTTTTTT
1475353 TTCTTTTTTATTTTT
1 TTCTTTTTT-TTTTT
1475368 TT
1 TT
1475370 TGTTTCTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 5 0.18
15 20 0.71
16 3 0.11
ACGTcount: A:0.04, C:0.09, G:0.02, T:0.85
Consensus pattern (14 bp):
TTCTTTTTTTTTTT
Found at i:1475375 original size:20 final size:21
Alignment explanation
Indices: 1475326--1475376 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
1475316 TTCATGCTTC
*
1475326 TTTTGTTT-TTTTTTCTCTTT
1 TTTTGTTTCTTTTTTATCTTT
*
1475346 TTTATTTTTCTTTTTTAT-TTT
1 TTT-TGTTTCTTTTTTATCTTT
1475367 TTTTGTTTCT
1 TTTTGTTTCT
1475377 GATTTAGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 9 0.35
21 10 0.38
22 7 0.27
ACGTcount: A:0.04, C:0.08, G:0.04, T:0.84
Consensus pattern (21 bp):
TTTTGTTTCTTTTTTATCTTT
Found at i:1479453 original size:13 final size:13
Alignment explanation
Indices: 1479435--1479460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1479425 TACACCAAGT
1479435 ATGTATCGATACA
1 ATGTATCGATACA
1479448 ATGTATCGATACA
1 ATGTATCGATACA
1479461 CAAAAACTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1481708 original size:21 final size:21
Alignment explanation
Indices: 1481675--1481719 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1481665 TTGCAAGTTG
*
1481675 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1481697 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1481717 AAA
1 AAA
1481720 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1483542 original size:15 final size:15
Alignment explanation
Indices: 1483524--1483553 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1483514 TCAAATTGGG
1483524 GAAGCTCAAAATGAA
1 GAAGCTCAAAATGAA
*
1483539 GAAGCTCCAAATGAA
1 GAAGCTCAAAATGAA
1483554 ATTGATGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.17, G:0.20, T:0.13
Consensus pattern (15 bp):
GAAGCTCAAAATGAA
Found at i:1485645 original size:13 final size:13
Alignment explanation
Indices: 1485627--1485652 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1485617 ACATTTTTCT
1485627 TTGTATCGATACA
1 TTGTATCGATACA
1485640 TTGTATCGATACA
1 TTGTATCGATACA
1485653 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1485816 original size:20 final size:20
Alignment explanation
Indices: 1485773--1485818 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1485763 AAATCTTTTG
1485773 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1485794 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1485814 CAAAA
1 CAAAA
1485819 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1488919 original size:20 final size:20
Alignment explanation
Indices: 1488865--1488920 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
1488855 AAAACCCTTA
** *
1488865 AAAGTATCGATACACATTTC
1 AAAGTATCGATACATGTTGC
1488885 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTTGC
*
1488905 AATGTATCGATACATG
1 AAAGTATCGATACATG
1488921 AAAAAGATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
AAAGTATCGATACATGTTGC
Found at i:1489008 original size:13 final size:13
Alignment explanation
Indices: 1488990--1489015 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1488980 TACACAAAGT
1488990 ATGTATCGATACA
1 ATGTATCGATACA
1489003 ATGTATCGATACA
1 ATGTATCGATACA
1489016 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1489034 original size:34 final size:32
Alignment explanation
Indices: 1488972--1489036 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
1488962 TAGCCAAACT
**
1488972 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAATGTATCGATACAA
1489004 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACAC-AAAAAA-TGTATCGATACA
1489037 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.45
33 4 0.14
34 12 0.41
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACAAAAAATGTATCGATACAA
Found at i:1491279 original size:21 final size:21
Alignment explanation
Indices: 1491246--1491295 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
1491236 TTACAAGTTG
*
1491246 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1491268 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
1491289 AAATAAA
1 AAATAAA
1491296 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1495222 original size:13 final size:13
Alignment explanation
Indices: 1495204--1495241 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1495194 CATTTTTCTT
1495204 TGTATCGATACAA
1 TGTATCGATACAA
*
1495217 TGTATCGATACAC
1 TGTATCGATACAA
1495230 TGTATCGATACA
1 TGTATCGATACA
1495242 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1495396 original size:20 final size:20
Alignment explanation
Indices: 1495353--1495398 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1495343 AAATCTTTTG
1495353 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1495374 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1495394 CAAAA
1 CAAAA
1495399 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1497133 original size:39 final size:40
Alignment explanation
Indices: 1497090--1497169 Score: 101
Period size: 39 Copynumber: 2.0 Consensus size: 40
1497080 TTAGTAAAAA
*
1497090 GGGAGAATGCATAAATTTGCTAAAATTA-TCTTA-TTAAGG
1 GGGAGAATGCACAAATTTGCTAAAATTACT-TTAGTTAAGG
* * *
1497129 GGGAGAATGTACGAATTTGTTAAAATTACTTTAGTTAAGG
1 GGGAGAATGCACAAATTTGCTAAAATTACTTTAGTTAAGG
1497169 G
1 G
1497170 AGAAAGAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
39 27 0.77
40 8 0.23
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.34
Consensus pattern (40 bp):
GGGAGAATGCACAAATTTGCTAAAATTACTTTAGTTAAGG
Found at i:1497824 original size:13 final size:13
Alignment explanation
Indices: 1497806--1497831 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1497796 TACACAAAGT
1497806 ATGTATCGATACA
1 ATGTATCGATACA
1497819 ATGTATCGATACA
1 ATGTATCGATACA
1497832 TAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1499306 original size:13 final size:13
Alignment explanation
Indices: 1499288--1499314 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1499278 TACAATGAAT
1499288 ATGTATCGATACA
1 ATGTATCGATACA
1499301 ATGTATCGATACA
1 ATGTATCGATACA
1499314 A
1 A
1499315 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1499310 original size:32 final size:33
Alignment explanation
Indices: 1499269--1499333 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
1499259 ACATTTGTTC
*
1499269 ATGTATCGATACAATGAAT-ATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
*
1499301 ATGTATCGATACAAAGCATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
1499334 TCTAAAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:1499926 original size:132 final size:133
Alignment explanation
Indices: 1499634--1499926 Score: 392
Period size: 133 Copynumber: 2.2 Consensus size: 133
1499624 ATCTAATGGT
* * ** * * * *
1499634 GCAAATGCACGTGAAACAATATAAATGGGAGCATCAATAAAGTGGCAAATGAATACGAAATGATA
1 GCAAATGCACATGAAACAATACAAATGCAAGTATTAATAAAGTGGCAAAAGAATACAAAATGATA
*
1499699 CAAATATCAATGTCATCTAGAGCAGTAGATGTGCATGAAATAATGCAAATTCAAGCATCAATAAA
66 CAAATATCAATGTCATCTAGAGCAGCAGATGTGCATGAAATAATGCAAATTCAAGCATCAATAAA
1499764 AAA
131 AAA
* * * *
1499767 TCAAATGCACGTGAAACAATATAAATGCAAGTATTAATAAAGTGGCAAAAGCATACAAAATGATA
1 GCAAATGCACATGAAACAATACAAATGCAAGTATTAATAAAGTGGCAAAAGAATACAAAATGATA
** *
1499832 CAAATATCAATGTCATCTAG-GGTGCAGATGTGCATGAAATAATGTAAATGT-AAGCATCAATAA
66 CAAATATCAATGTCATCTAGAGCAGCAGATGTGCATGAAATAATGCAAAT-TCAAGCATCAATAA
*
1499895 AAAG
130 AAAA
* *
1499899 GCAAATTCACATGAAACAATGCAAATGC
1 GCAAATGCACATGAAACAATACAAATGC
1499927 CAATATGGTC
Statistics
Matches: 141, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 63 0.45
133 78 0.55
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22
Consensus pattern (133 bp):
GCAAATGCACATGAAACAATACAAATGCAAGTATTAATAAAGTGGCAAAAGAATACAAAATGATA
CAAATATCAATGTCATCTAGAGCAGCAGATGTGCATGAAATAATGCAAATTCAAGCATCAATAAA
AAA
Found at i:1500572 original size:17 final size:18
Alignment explanation
Indices: 1500544--1500577 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1500534 TCTTTCTATT
*
1500544 TTTTTCATTTTTTCTTTC
1 TTTTTCATTTTTGCTTTC
1500562 TTTTTCA-TTTTGCTTT
1 TTTTTCATTTTTGCTTT
1500578 TTGTTTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTTTCATTTTTGCTTTC
Found at i:1503841 original size:21 final size:19
Alignment explanation
Indices: 1503817--1503870 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 19
1503807 TTTCAACAAT
1503817 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAA-AGT-A
* *
1503838 TTGTATCGATACATAAGTG
1 TTGTATCGATACAAAAGTA
1503857 TTGTATCGATACAA
1 TTGTATCGATACAA
1503871 TGTATCGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 13 0.43
20 3 0.10
21 14 0.47
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (19 bp):
TTGTATCGATACAAAAGTA
Found at i:1503862 original size:19 final size:19
Alignment explanation
Indices: 1503817--1503899 Score: 79
Period size: 19 Copynumber: 4.6 Consensus size: 19
1503807 TTTCAACAAT
* *
1503817 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACATA-AGT-G
1503838 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
1503857 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
1503871 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
1503889 TTGTATTGATA
1 TTGTATCGATA
1503900 TAATATATCG
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
13 11 0.21
15 2 0.04
17 2 0.04
19 21 0.40
20 3 0.06
21 14 0.26
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:1503876 original size:13 final size:13
Alignment explanation
Indices: 1503858--1503882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1503848 ACATAAGTGT
1503858 TGTATCGATACAA
1 TGTATCGATACAA
1503871 TGTATCGATACA
1 TGTATCGATACA
1503883 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1503880 original size:32 final size:32
Alignment explanation
Indices: 1503839--1503914 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
1503829 AAACAGTAAT
1503839 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
1503871 TGTATCGATACATAAGTGTTGTATTGATATAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
1503903 TATATCGCTACA
1 TGTATCGATACA
1503915 AAGCTACTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1503956 original size:20 final size:20
Alignment explanation
Indices: 1503931--1503983 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
1503921 CTGCCAAGGA
1503931 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
1503951 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
*
1503971 AATGTATTGATAC
1 AATGTATCGATAC
1503984 GTGCAGGCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTACTC
Done.