Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1546936
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 2 of 13
Found at i:153779 original size:13 final size:13
Alignment explanation
Indices: 153761--153821 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 13
153751 ATACAAAGAT
153761 CAATGTATCGATA
1 CAATGTATCGATA
153774 CAATGTATCGATA
1 CAATGTATCGATA
*
153787 CACTG-A---AT-
1 CAATGTATCGATA
153795 -AATGTATCGATA
1 CAATGTATCGATA
153807 CAATGTATCGATA
1 CAATGTATCGATA
153820 CA
1 CA
153822 TTGAATAATG
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 3 0.08
8 1 0.03
9 2 0.05
11 2 0.05
12 1 0.03
13 31 0.77
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:153781 original size:33 final size:33
Alignment explanation
Indices: 153743--153841 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
153733 AAATTCCCTG
*
153743 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAATGAAT-AATGTATCGATACA
*
153776 ATGTATCGATACACTGAATAATGTATCGATACA
1 ATGTATCGATACAATGAATAATGTATCGATACA
*
153809 ATGTATCGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAATGAATAATGTATCGATACA
153842 TTTCCTTGGC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
33 60 0.97
34 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAATGAATAATGTATCGATACA
Found at i:153842 original size:20 final size:20
Alignment explanation
Indices: 153775--153843 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
153765 GTATCGATAC
*
153775 AATGTATCGATACACTGAAT
1 AATGTATCGATACATTGAAT
153795 AATGTATCGATAC-------
1 AATGTATCGATACATTGAAT
153808 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
153828 AATGTATCGATACATT
1 AATGTATCGATACATT
153844 TCCTTGGCAG
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 13 0.31
20 29 0.69
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:153897 original size:19 final size:19
Alignment explanation
Indices: 153873--153967 Score: 106
Period size: 19 Copynumber: 5.6 Consensus size: 19
153863 AGCGATATAT
153873 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
153892 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
153905 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
153924 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
153937 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
153956 TGTATCGATACA
1 TGTATCGATACA
153968 TTTACTGTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 18 0.28
14 2 0.03
16 12 0.19
18 2 0.03
19 30 0.47
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:153907 original size:32 final size:32
Alignment explanation
Indices: 153860--153969 Score: 202
Period size: 32 Copynumber: 3.4 Consensus size: 32
153850 GCAGTAGCTT
* *
153860 TGTAGCGATATATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
153892 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
153924 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
153956 TGTATCGATACATT
1 TGTATCGATACATT
153970 TACTGTTTGT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 76 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:153910 original size:13 final size:13
Alignment explanation
Indices: 153892--153948 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
153882 ACAACACTTA
153892 TGTATCGATACAT
1 TGTATCGATACAT
153905 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
153923 ATGTATCGATACAT
1 -TGTATCGATACAT
153937 TGTATCGATACA
1 TGTATCGATACA
153949 ACACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:154912 original size:49 final size:49
Alignment explanation
Indices: 154691--155114 Score: 399
Period size: 49 Copynumber: 8.5 Consensus size: 49
154681 CGAAGAATGA
* * * * * *
154691 CAATGTGCTTATTCATGGCCAACGACATTAGACTTGAAGA--AAAATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGTGC
** * *
154738 CAATGTGCTGAGACAAGGCCAACGACATTAGG-CTTAGGAATG-TTAAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTA--AA-GATGAAAG-TGC
* * * * * * * *
154790 CAATATGCTGATTCAAGGCCGGTGACCTTAGTCTCAAAGATGACGAAGGCGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA--AA-GTGC
* * *
154842 CAATATGCTGATTCAAAGCCAGCGATATTGGACTTAAAGATGAAAGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGTGC
*
154891 TAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-AAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAG-TGC
* * * * * *
154940 CAATGTGCAGATTCAAGGCCAACGACATTAGTCTTAGAGATGACGAAGACGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA--AAG-TGC
* * *
154992 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGTGC
* *
155041 CAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGTGC
*
155090 CAATGTGTTGATTCAAGGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
155115 TATCAGACTT
Statistics
Matches: 309, Mismatches: 52, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
47 28 0.09
48 4 0.01
49 154 0.50
50 9 0.03
51 4 0.01
52 109 0.35
53 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGTGC
Found at i:154971 original size:150 final size:150
Alignment explanation
Indices: 154735--155110 Score: 538
Period size: 150 Copynumber: 2.5 Consensus size: 150
154725 TGAAGAAAAA
** * * *
154735 TGCCAATGTGCTGAGACAAGGCCAACGACATTAGG-CTTAGGAATGTTAAAGATGCCAATATGCT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATT-GGACTTA--AA-GATGAAGATGCCAATGTGCT
*** * *
154799 GATTCAAGGCCGGTGACCTTAGTCTCAAAGATGACGAAGGCGCCAATATGCTGATTCAAAGCCAG
62 GATTCAAGGCCAACGACATTAGTCTCAAAGATGACGAAGACGCCAATATGCTGATTCAAAGCCAG
154864 CGATATTGGACTTAAAGATGAAAG
127 CGATATTGGACTTAAAGATGAAAG
* * *
154888 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATGTGCAGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGATGCCAATGTGCTGATT
* * *
154953 CAAGGCCAACGACATTAGTCTTAGAGATGACGAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
66 CAAGGCCAACGACATTAGTCTCAAAGATGACGAAGACGCCAATATGCTGATTCAAAGCCAGCGAT
*
155018 ATTGGACTTAAAGATGAAGG
131 ATTGGACTTAAAGATGAAAG
* *
155038 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGTTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGATGCCAATGTGCTGATT
155103 CAAGGCCA
66 CAAGGCCA
155111 GCGATATCAG
Statistics
Matches: 200, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
150 164 0.82
151 2 0.01
152 2 0.01
153 32 0.16
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (150 bp):
TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGATGCCAATGTGCTGATT
CAAGGCCAACGACATTAGTCTCAAAGATGACGAAGACGCCAATATGCTGATTCAAAGCCAGCGAT
ATTGGACTTAAAGATGAAAG
Found at i:155001 original size:101 final size:101
Alignment explanation
Indices: 154682--155124 Score: 418
Period size: 101 Copynumber: 4.4 Consensus size: 101
154672 TCGAAGATGC
* * * * * *
154682 GAAGAATGACAATGTGCTTATTCATGGCCAACGACATTAGACTTGAAGA--AAAATGCCAATGTG
1 GAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAGATGCCAATGTG
** * *
154745 CTGAGACAAGGCCAACGACATTAGGCTTAG-GAATGTT
65 CTGATTCAAGGCCAACGACATTAGACTTAGAG-ATGAT
* * * * * * * ** *
154782 AAAGATGCCAATATGCTGATTCAAGGCCGGTGACCTTAGTCTCAAAGATGACGAAGGCGCCAATA
1 GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGAT---GAAGATGCCAATG
* * * * *
154847 TGCTGATTCAAAGCCAGCGATATTGGACTTAAAGATGA-
63 TGCTGATTCAAGGCCAACGACATTAGACTTAGAGATGAT
* *
154885 -AAG-TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATGTGC
1 GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAGATGCCAATGTGC
* * *
154948 AGATTCAAGGCCAACGACATTAGTCTTAGAGATGAC
66 TGATTCAAGGCCAACGACATTAGACTTAGAGATGAT
* * * * *
154984 GAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGC
1 GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAGATGCCAATGTGC
*
155049 TGATTCAAGGCCAACGACATTGGACTTA-A-A-GAT
66 TGATTCAAGGCCAACGACATTAGACTTAGAGATGAT
* * * *
155082 GAAGGTGCCAATGTGTTGATTCAAGGCCAGCGATATCAGACTT
1 GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTT
155125 GAGAAAGATG
Statistics
Matches: 276, Mismatches: 58, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
98 80 0.29
99 34 0.12
100 7 0.03
101 116 0.42
102 3 0.01
104 35 0.13
105 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (101 bp):
GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAGATGCCAATGTGC
TGATTCAAGGCCAACGACATTAGACTTAGAGATGAT
Found at i:155194 original size:28 final size:28
Alignment explanation
Indices: 155146--155520 Score: 397
Period size: 28 Copynumber: 13.2 Consensus size: 28
155136 CACCAACTTG
* *
155146 TGTGGGCTTTTG--AAGGTTGCCATTGTCT
1 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
155174 TGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
155202 TGTGGGCTTCTG--AAGGTTGCCACTGACT
1 TGTGGGCTT-TGAAAAGG-TGCCACTGACT
*
155230 TGTGGGCTTTTG--AAGGTTGCCACTAACT
1 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
*
155258 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * * *
155286 TATGGGTTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * * *
155314 TGGGGGCTTCTG-AAAGTTACCACTAACT
1 TGTGGGCTT-TGAAAAGGTGCCACTGACT
**
155342 TGTCAGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
155370 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAAGGTGCCACTGACT
* * *
155399 TGTAGGCTTTGAAAAGGGTGCTACTGATT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
*
155428 TGTGGGCTTTTAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
155457 TGTGGGCTTTG-GAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
155485 TGTGGGCTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
155514 TGTGGGC
1 TGTGGGC
155521 ATTGGAAGGT
Statistics
Matches: 298, Mismatches: 35, Indels: 27
0.83 0.10 0.08
Matches are distributed among these distances:
27 14 0.05
28 182 0.61
29 100 0.34
30 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:155279 original size:84 final size:85
Alignment explanation
Indices: 155123--155520 Score: 437
Period size: 84 Copynumber: 4.6 Consensus size: 85
155113 GATATCAGAC
** * **
155123 TTGAGAAAGATGCCACCAACTTGTGTGGGCTTTTGAAGGTTGCCATTGTCTTGTGGGCTTTGAAA
1 TTGA-AAAGATGCCACTGAC-T-TGTGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAA
*
155188 AGGTGCCACTGACTTGTGGGCTT
63 AGATGCCACTGACTTGTGGGCTT
* * *
155211 CTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGA
1 TTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGA
*
155275 TGCCACTGACTTATGGG-TT
66 TGCCACTGACTTGTGGGCTT
* * * * * ** *
155294 TTGAAAAGATGCCACTAACTTGGGGGCTTCTGAAAGTTACCACTAACTTGTCAGCTTTGAAAAGG
1 TTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGA
155359 TGCCACTGACTTGTGGGCTT
66 TGCCACTGACTTGTGGGCTT
* * * * * *
155379 TTGAAAAGATGCCACTGACTTGTAGGC-TTTGAAAAGGGTGCTACTGATTTGTGGGCTTTTAAAA
1 TTGAAAAGATGCCACTGACTTGTGGGCTTTTG--AAGGTTGCCACTAACTTGTGGGCTTTGAAAA
155443 GGATGCCACTGACTTGTGGGC-T
64 -GATGCCACTGACTTGTGGGCTT
* * * *
155465 TTGGAAGGTTGCCACTGACTTGTGGGC-TTTGAAAAGGGTGCCACTAACTTGTGGGC
1 TTGAAAAGATGCCACTGACTTGTGGGCTTTTG--AAGGTTGCCACTAACTTGTGGGC
155521 ATTGGAAGGT
Statistics
Matches: 262, Mismatches: 43, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
83 4 0.02
84 127 0.48
85 27 0.10
86 83 0.32
87 19 0.07
88 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (85 bp):
TTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGA
TGCCACTGACTTGTGGGCTT
Found at i:156987 original size:13 final size:12
Alignment explanation
Indices: 156969--157016 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
156959 CTTTTTGTTG
156969 TTGTTTTTTTTT
1 TTGTTTTTTTTT
*
156981 TTG--GTTTTTT
1 TTGTTTTTTTTT
* *
156991 TTGTTTGTTTGT
1 TTGTTTTTTTTT
157003 TTGTTTTTTTTT
1 TTGTTTTTTTTT
157015 TT
1 TT
157017 TGCTGAAGAC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
10 9 0.32
12 19 0.68
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
TTGTTTTTTTTT
Found at i:157013 original size:25 final size:24
Alignment explanation
Indices: 156960--157018 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
156950 ATCCGGACCC
* *
156960 TTTTTGTTGTTGTTTTTTTTTTTGG
1 TTTTTTTTGTTGTTTTTTGTTTT-G
156985 TTTTTTTTGTTTGTTTGTTTGTTTT-
1 TTTTTTTTG-TTGTTT-TTTGTTTTG
157010 TTTTTTTTG
1 TTTTTTTTG
157019 CTGAAGACGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 17 0.57
26 6 0.20
27 7 0.23
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (24 bp):
TTTTTTTTGTTGTTTTTTGTTTTG
Found at i:170673 original size:20 final size:20
Alignment explanation
Indices: 170648--170703 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
170638 GTATCGATAC
170648 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
*
170668 AATGTATCGAAACATTGAAT
1 AATGTATCGATACATTGAAT
170688 AATGTATCGATACATT
1 AATGTATCGATACATT
170704 TCCTTAGCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:170761 original size:19 final size:19
Alignment explanation
Indices: 170733--170795 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
170723 AGCGATACAT
*
170733 TGTATCGATACAACACTTA
1 TGTATTGATACAACACTTA
170752 TGTATTGAT---ACA---A
1 TGTATTGATACAACACTTA
170765 TGTATTGATACAACACTTA
1 TGTATTGATACAACACTTA
170784 TGTATTGATACA
1 TGTATTGATACA
170796 TTTGCTATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 10 0.27
16 6 0.16
19 21 0.57
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (19 bp):
TGTATTGATACAACACTTA
Found at i:170769 original size:13 final size:13
Alignment explanation
Indices: 170751--170777 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
170741 TACAACACTT
170751 ATGTATTGATACA
1 ATGTATTGATACA
170764 ATGTATTGATACA
1 ATGTATTGATACA
170777 A
1 A
170778 CACTTATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:170769 original size:32 final size:32
Alignment explanation
Indices: 170726--170795 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
170716 GCTTTGTAGC
*
170726 GATACATTGTATCGATACAACACTTATGTATT
1 GATACAATGTATCGATACAACACTTATGTATT
*
170758 GATACAATGTATTGATACAACACTTATGTATT
1 GATACAATGTATCGATACAACACTTATGTATT
170790 GATACA
1 GATACA
170796 TTTGCTATTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (32 bp):
GATACAATGTATCGATACAACACTTATGTATT
Found at i:171724 original size:49 final size:49
Alignment explanation
Indices: 171518--171893 Score: 279
Period size: 49 Copynumber: 7.7 Consensus size: 49
171508 CGAAGAATGA
* * * *
171518 CAATGTGCTGATTCATGGCCAACGACATTAGACTTGAAA-AAGAA--TGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGATGAAGGTGC
** * * * * *
171565 CAATGTGCTGAGACAAAGCTAGCGACATTGGGCTT--AG--GAATGT-T
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * * * *
171609 AAATATGCTGATTCAAAGCC-GACGACCTTGGTCTCAAAGATGACGAAGGCGC
1 CAATGTGCTGATTCAAGGCCAG-CGACATTGGACTTAAAGAT---GAAGGTGC
* * * *
171661 CAATATGCTAATTCAAGGCTAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
171710 CAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGAAGATG-
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * * *
171758 CAATGTG-TAGATTCAAGGCCAGTGACATTAGTCCTAGAGATGACGAAGGCGC
1 CAATGTGCT-GATTCAAGGCCAGCGACATTGGACTTA-A-A-GATGAAGGTGC
* * *
171810 CAATATGCTGATTCAAGGCCAGCGATATTGAACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
171859 CAATGTGCTGATTCAAGGCCGGCAACATTGGACTT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
171894 TGTTAGGATC
Statistics
Matches: 255, Mismatches: 55, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.02
44 26 0.10
45 1 0.00
46 2 0.01
47 28 0.11
48 29 0.11
49 91 0.36
50 2 0.01
51 12 0.05
52 58 0.23
53 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
Found at i:172305 original size:13 final size:13
Alignment explanation
Indices: 172287--172312 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
172277 TACATCAAGT
172287 ATGTATCGATACA
1 ATGTATCGATACA
172300 ATGTATCGATACA
1 ATGTATCGATACA
172313 CCAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:178672 original size:20 final size:20
Alignment explanation
Indices: 178629--178674 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
178619 AAATCTTTTG
178629 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
178650 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
178670 CAAAA
1 CAAAA
178675 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:181119 original size:13 final size:13
Alignment explanation
Indices: 181101--181126 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
181091 TACACCAAGT
181101 ATGTATCGATACA
1 ATGTATCGATACA
181114 ATGTATCGATACA
1 ATGTATCGATACA
181127 CCAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:181145 original size:34 final size:32
Alignment explanation
Indices: 181083--181147 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
181073 TAGCCAAACT
**
181083 TGTATCGATACACCAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAATGTATCGATACAA
181115 TGTATCGATACACCAAAAAATTGTATCGATACA
1 TGTATCGATACACC-AAAAA-TGTATCGATACA
181148 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 14 0.48
33 3 0.10
34 12 0.41
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACCAAAAATGTATCGATACAA
Found at i:182378 original size:29 final size:28
Alignment explanation
Indices: 181974--182378 Score: 434
Period size: 28 Copynumber: 14.4 Consensus size: 28
181964 CACCAACTTG
* *
181974 TGTGGGCTTTTG--AAGGTTGCCATTGTCT
1 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
182002 TGTGGGCTTTGAAAAGGTGCCA-TGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
182029 TGTGGGCTTCTG--AAGTTGCCACTGACT
1 TGTGGGCTT-TGAAAAGGTGCCACTGACT
*
182056 TGTGGGCTTTTG--AGGGTTGCCACTGACT
1 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
* * *
182084 TGTGAGCTTTGAAAAGATACCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
182112 TGTGGGTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
182140 TGTGGGCTTCTG--AAGGTTGCCACTAACT
1 TGTGGGCTT-TGAAAAGG-TGCCACTGACT
182168 TGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
182196 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAAGGTGCCACTGACT
* *
182225 TGTAGGCTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
182254 TGTGAGCTTTTAAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
182283 TATGGGCTTTG-GAAGGTTGCCACTGTCT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
182311 TGTGGGCTTTGAAAAGATGCCACTGATT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
182339 TGTGAGCTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
182368 TGTGGGCTTTG
1 TGTGGGCTTTG
182379 GAAGGTGAGG
Statistics
Matches: 321, Mismatches: 39, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.02
27 44 0.14
28 164 0.51
29 105 0.33
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:186540 original size:13 final size:13
Alignment explanation
Indices: 186522--186546 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
186512 CATTATGCTT
186522 TGTATCGATACAA
1 TGTATCGATACAA
186535 TGTATCGATACA
1 TGTATCGATACA
186547 TAATCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:186562 original size:32 final size:33
Alignment explanation
Indices: 186501--186565 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
186491 ATACATCCAG
* *
186501 ATGTATCGATACATTATGCTTTGTATCGATACA
1 ATGTATCGATACATAATGCATTGTATCGATACA
186534 ATGTATCGATACATAAT-CATTGTATCGATACA
1 ATGTATCGATACATAATGCATTGTATCGATACA
186566 TGCACAATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.47
33 16 0.53
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (33 bp):
ATGTATCGATACATAATGCATTGTATCGATACA
Found at i:186577 original size:20 final size:20
Alignment explanation
Indices: 186531--186589 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
186521 TTGTATCGAT
186531 ACAA-TGTATCGATACAT-A
1 ACAATTGTATCGATACATGA
*
186549 ATC-ATTGTATCGATACATGC
1 A-CAATTGTATCGATACATGA
*
186569 ACAATTGTATCAATACATGA
1 ACAATTGTATCGATACATGA
186589 A
1 A
186590 ACTAGTAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.06
19 15 0.44
20 17 0.50
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.31
Consensus pattern (20 bp):
ACAATTGTATCGATACATGA
Found at i:187829 original size:79 final size:79
Alignment explanation
Indices: 187693--187995 Score: 471
Period size: 79 Copynumber: 3.8 Consensus size: 79
187683 ATAAAATTGA
* * *
187693 GGTTAGAGTATCCCCGATTATTAAAAATTGATGTTTTCGAAATAAAACCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
*
187758 CTCGGAAATAACAG
66 CTCGGAAATAACGG
* **
187772 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATTGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
*
187837 CTCGAAAATAACGG
66 CTCGGAAATAACGG
* *
187851 GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGAGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
**
187916 CTAAGAAATAACGG
66 CTCGGAAATAACGG
* * *
187930 GGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
187995 C
66 C
187996 GATTATGAAA
Statistics
Matches: 203, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 203 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (79 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
CTCGGAAATAACGG
Found at i:187992 original size:51 final size:51
Alignment explanation
Indices: 187927--188046 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 51
187917 TAAGAAATAA
*
187927 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
* * * *
187978 CGGGGTTGGAGTATCCCCGATTATGAAAATTTGATGTTTTAGAGATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
* *
188029 TGGGATTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
188047 TCAGAAATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
Found at i:188005 original size:130 final size:129
Alignment explanation
Indices: 187848--188124 Score: 403
Period size: 130 Copynumber: 2.1 Consensus size: 129
187838 TCGAAAATAA
*
187848 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGAGG-TTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCG-GGATTGGAGTA
* ** *
187912 TCCCCTAAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAA
65 TCCCCTAAGAAATAACGAGGTTAAAGTAT-CCCGATTATGAAAAATTAATATTTTAGAAATAAAA
187977 C
129 C
* * *
187978 CGGGGTTGGAGTATCCCCGATTATGAAAATTTGATGTTTTAGAGATAAAACTGGGATTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGATTGGAGTAT
* ** * *
188043 CCCCTCAGAAATAACGAGGTTAAAGTATCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAT
66 CCCCTAAGAAATAACGAGGTTAAAGTATCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
*
188107 CGGGGTTAGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
188125 TCGAAAATAA
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
129 50 0.38
130 82 0.62
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (129 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGATTGGAGTAT
CCCCTAAGAAATAACGAGGTTAAAGTATCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
Found at i:188070 original size:79 final size:79
Alignment explanation
Indices: 187987--188203 Score: 314
Period size: 78 Copynumber: 2.8 Consensus size: 79
187977 CCGGGGTTGG
* * *
187987 AGTATCCCCGATTATGAAAATTTGATGTTTTAGAGATAAAA-CTGGGATTGGAGTATCCCCTC-A
1 AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATC-GGGGTTGGAGTATCCCCTCGA
188050 GAAATAACGAGGTTAA
65 -AAATAACGAGGTTAA
* *
188066 AGTAT-CCCGATTATGAAAAATTGGTGTTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTCGAA
1 AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAA
* **
188130 AATAACGGGGTTGG
66 AATAACGAGGTTAA
*
188144 AGTATCTCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
188204 GATTAAAGGA
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
78 66 0.53
79 58 0.47
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (79 bp):
AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAA
AATAACGAGGTTAA
Found at i:188177 original size:208 final size:209
Alignment explanation
Indices: 187771--188254 Score: 703
Period size: 208 Copynumber: 2.3 Consensus size: 209
187761 GGAAATAACA
* *
187771 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATTGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACTGGGATTGGAGTATCC
* **
187836 CCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCG
66 CCTCGAAAATAACGAGGTTAAAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCG
* *
187901 AGGTTGGAGTATCCCCTAAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTT
131 AGGTTAGAGTATCCCCTAAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTT
187966 TAGAAATAAAACCG
196 TAGAAATAAAACCG
*
187980 GGGTTGGAGTATCCCCGATTATGAAAATTTGATGTTTTAGAGATAAAACTGGGATTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACTGGGATTGGAGTATCC
*
188045 CCTC-AGAAATAACGAGGTTAAAGTAT-CCCGATTATGAAAAATTGGTGTTTTAGAAATAAAATC
66 CCTCGA-AAATAACGAGGTTAAAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACC
* * * * *
188108 GGGGTTAGAGTATCCCCT-CGAAAATAACGGGGTTGGAGTATCTCCGATTATGAAAAATTGATGT
130 GAGGTTAGAGTATCCCCTAAG-AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATAT
*
188172 TTTAGAAATAAAATCG
194 TTTAGAAATAAAACCG
* * *
188188 GGGTTGGAGTATCCCCGATTA--AAGGAAATTGTTGTTTT-GAAAATAAAA-TCGGGGTTGGAGT
1 GGGTTGGAGTATCCCCGATTATGAA--AAATTGATGTTTTAG-AGATAAAACT-GGGATTGGAGT
188249 ATCCCC
62 ATCCCC
188255 GATTAAAGGA
Statistics
Matches: 250, Mismatches: 19, Indels: 13
0.89 0.07 0.05
Matches are distributed among these distances:
206 2 0.01
207 3 0.01
208 162 0.65
209 83 0.33
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (209 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACTGGGATTGGAGTATCC
CCTCGAAAATAACGAGGTTAAAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCG
AGGTTAGAGTATCCCCTAAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTT
TAGAAATAAAACCG
Found at i:188311 original size:104 final size:103
Alignment explanation
Indices: 188135--188409 Score: 283
Period size: 104 Copynumber: 2.7 Consensus size: 103
188125 TCGAAAATAA
* * * *
188135 CGGGGTTGGAGTATCTCCGATT-ATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATGTTTTAAAAATAAAATCGGGGTTAGAGTA
*
188199 TCCCCGATTAAAGGAAA-TT-GTTGTTTT-GAAAATAAAAT
66 TCCCCGATT-AAGGAAAGTTAG-TGTTTTAG-AAATAAAAC
* * * *
188237 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTGTTTTGAAAAATAAAA-CTGGGTTTAGAG
1 CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATGTTTT-AAAAATAAAATC-GGGGTTAGAG
* *
188301 TATCCCCGATTATGGAAAGTTAGTGTTTTAGAAATGAAAC
64 TATCCCCGATTAAGGAAAGTTAGTGTTTTAGAAATAAAAC
* * ** * ** **
188341 CGGGGTTGGAGTATCCCCCATT-AAGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTAGAGTA
1 CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATGTTTTAAAAATAAAATCGGGGTTAGAGTA
188405 TCCCC
66 TCCCC
188410 TCGGAGGTAA
Statistics
Matches: 143, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
102 44 0.31
103 33 0.23
104 64 0.45
105 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (103 bp):
CGGGGTTGGAGTATCCCCGATTAAAGAAAAATTGATGTTTTAAAAATAAAATCGGGGTTAGAGTA
TCCCCGATTAAGGAAAGTTAGTGTTTTAGAAATAAAAC
Found at i:188334 original size:155 final size:151
Alignment explanation
Indices: 188128--188571 Score: 407
Period size: 155 Copynumber: 2.9 Consensus size: 151
188118 TATCCCCTCG
* * *
188128 AAAATAACGGGGTTGGAGTATCTCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTT
1 AAAATAACGAGGTTAGAGTATCCCCGATTATGAAAAATTG-TGTTTTAGAAATAAAATCGGGGTT
*
188193 GGAGTATCCCCGATTAAAGGAAATTGTTGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGAT
65 GGAGTATCCCCGATTAAAGGAAATTGATGTTTTGAAAATAAAA-CGGGGTTGGAGTATCCCCGAT
* * **
188258 TAAAGGAAATTTGGTGT-T-TTGA-
129 TAAAGG--AGTTGGAGTATCCCGAT
* * * *
188280 AAAATAAAACTG-GGTTTAGAGTATCCCCGATTATGGAAAGTTAGTGTTTTAGAAATGAAACCGG
1 AAAAT--AAC-GAGG-TTAGAGTATCCCCGATTATGAAAAATT-GTGTTTTAGAAATAAAATCGG
* ** * * * *
188344 GGTTGGAGTATCCCCCATT-AAGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTAGAGTATCC
61 GGTTGGAGTATCCCCGATTAAAG-GAAATTGATGTTTTGAAAATAAA-ACGGGGTTGGAGTAT-C
* * *
188408 CCTCGGAGGTAACGGGGTTGGAGTATCCCCGAT
123 CC-C-GA-TTAAAGGAGTTGGAGTAT-CCCGAT
* * * * *
188441 GAAATAACGAGGTTGGAGTATCCTCGA-T-TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGT
1 AAAATAACGAGGTTAGAGTATCCCCGATTATGAAAAATT-GTG-TTTTAGAAATAAAATCGGGGT
* *
188504 TGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACTGAGGTTGGAGTATCCCCGA
64 TGGAGTATCCCCGATTAAAGGAAATTGATGTTTTGAAAATAAAAC-GGGGTTGGAGTATCCCCGA
188569 TTA
128 TTA
188572 TGAGCAATTG
Statistics
Matches: 232, Mismatches: 41, Indels: 37
0.75 0.13 0.12
Matches are distributed among these distances:
152 5 0.02
153 2 0.01
154 10 0.04
155 92 0.40
156 18 0.08
157 69 0.30
158 20 0.09
159 10 0.04
160 2 0.01
161 4 0.02
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (151 bp):
AAAATAACGAGGTTAGAGTATCCCCGATTATGAAAAATTGTGTTTTAGAAATAAAATCGGGGTTG
GAGTATCCCCGATTAAAGGAAATTGATGTTTTGAAAATAAAACGGGGTTGGAGTATCCCCGATTA
AAGGAGTTGGAGTATCCCGAT
Found at i:188448 original size:28 final size:29
Alignment explanation
Indices: 188417--188473 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
188407 CCCTCGGAGG
*
188417 TAACGGGGTTGGAGTATCCCCGA-TGAAA
1 TAACGAGGTTGGAGTATCCCCGATTGAAA
*
188445 TAACGAGGTTGGAGTATCCTCGATTGAAA
1 TAACGAGGTTGGAGTATCCCCGATTGAAA
188474 AATTGGTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
TAACGAGGTTGGAGTATCCCCGATTGAAA
Found at i:188557 original size:51 final size:51
Alignment explanation
Indices: 188136--188571 Score: 299
Period size: 51 Copynumber: 8.4 Consensus size: 51
188126 CGAAAATAAC
* *
188136 GGGGTTGGAGTATCTCCGATTATGAA--AAATTGATGTTTT-AGAAATAAAA-T
1 GGGGTTGGAGTATCCCCGATTA--AAGGAAATTGGTGTTTTGA-AAATAAAACT
*
188186 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTGTTGTTTTGAAAATAAAA-T
1 -GGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACT
188237 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTGTTTTGAAAAATAAAACT
1 -GGGGTTGGAGTATCCCCGATTAAAGGAAA-TTGGTGTTTTG-AAAATAAAACT
* * * * * *
188291 GGGTTTAGAGTATCCCCGATT-ATGGAAAGTTAGTGTTTT-AGAAATGAAACC
1 GGGGTTGGAGTATCCCCGATTAAAGGAAA-TTGGTGTTTTGA-AAATAAAACT
* *** * * * *
188342 GGGGTTGGAGTATCCCCCATT-AAGAGAAATCAATATTTTGGAAATAAAGCC
1 GGGGTTGGAGTATCCCCGATTAAAG-GAAATTGGTGTTTTGAAAATAAAACT
* * * ** * **
188393 GGGGTTAGAGTATCCCCTCGGAGGTAACGG-GGTTGGAGTATCCCCGATGAAAT--AAC-
1 GGGGTTGGAGTAT-CCC-C-GA-TTAAAGGAAATTGGTGT-T--TTGA--AAATAAAACT
* * * *
188449 GAGGTTGGAGTATCCTCGATTGAA--AAATTGGTGTTTTTGGAAATAAAA-T
1 GGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTG-TTTTGAAAATAAAACT
*
188498 CGGAGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACT
1 -GGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACT
*
188550 GAGGTTGGAGTATCCCCGATTA
1 GGGGTTGGAGTATCCCCGATTA
188572 TGAGCAATTG
Statistics
Matches: 303, Mismatches: 54, Indels: 56
0.73 0.13 0.14
Matches are distributed among these distances:
47 4 0.01
49 5 0.02
50 21 0.07
51 166 0.55
52 46 0.15
53 31 0.10
54 5 0.02
55 5 0.02
56 13 0.04
57 3 0.01
59 4 0.01
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACT
Found at i:189573 original size:43 final size:43
Alignment explanation
Indices: 189523--189622 Score: 173
Period size: 43 Copynumber: 2.3 Consensus size: 43
189513 TCGCTGGAGG
*
189523 TGCTGTTGTGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCTGC
1 TGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCTGC
* *
189566 TGTTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCTGC
1 TGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCTGC
189609 TGCTGTTGCGTGCT
1 TGCTGTTGCGTGCT
189623 AGAACTGTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.06, C:0.20, G:0.39, T:0.35
Consensus pattern (43 bp):
TGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCTGC
Found at i:189644 original size:43 final size:43
Alignment explanation
Indices: 189523--189649 Score: 123
Period size: 43 Copynumber: 3.0 Consensus size: 43
189513 TCGCTGGAGG
* * * *
189523 TGCTGTTGTGTGCTGGAGCTGCAGTCG-CTGCTGGAGTTGCTGC
1 TGCTGTTGCGTGCTAGAACTGCAGCCGTC-GCTGGAGTTGCTGC
* * * * *
189566 TGTTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCTGC
1 TGCTGTTGCGTGCTAGAACTGCAGCCGTCGCTGGAGTTGCTGC
* *
189609 TGCTGTTGCGTGCTAGAACTGTC-GCCGTCGTTGGAGCTGCT
1 TGCTGTTGCGTGCTAGAACTG-CAGCCGTCGCTGGAGTTGCT
189650 TTTGCGTGTT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
43 71 0.99
44 1 0.01
ACGTcount: A:0.08, C:0.21, G:0.38, T:0.33
Consensus pattern (43 bp):
TGCTGTTGCGTGCTAGAACTGCAGCCGTCGCTGGAGTTGCTGC
Found at i:190117 original size:26 final size:26
Alignment explanation
Indices: 189964--190114 Score: 259
Period size: 26 Copynumber: 5.8 Consensus size: 26
189954 TCCAATTGCA
*
189964 ATTTT-TATTTCCTTTCCGATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
*
189989 ATTTTTTATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
190015 ATTTTCTATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
*
190041 ATTTTTTATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
*
190067 ATTTTCTATTTCCTTTCCCATGTTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
190093 ATTTTCTATTTCCTTTCCCATG
1 ATTTTCTATTTCCTTTCCCATG
190115 TTGTAAGTTT
Statistics
Matches: 120, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 5 0.04
26 115 0.96
ACGTcount: A:0.12, C:0.27, G:0.08, T:0.53
Consensus pattern (26 bp):
ATTTTCTATTTCCTTTCCCATGCTGC
Found at i:190156 original size:4 final size:4
Alignment explanation
Indices: 190149--190191 Score: 61
Period size: 4 Copynumber: 10.5 Consensus size: 4
190139 TTTTTTTTTA
190149 ATTT ATTT ATTTT ATTT ATTTT ATTT ATTT ATTT ATTT -TTT AT
1 ATTT ATTT A-TTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT AT
190192 GCATGAATTG
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 3 0.08
4 25 0.69
5 8 0.22
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:190162 original size:9 final size:9
Alignment explanation
Indices: 190140--190187 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
190130 TTTGCAGGTT
*
190140 TTTTTTTTA
1 TTTTATTTA
*
190149 ATTTATTTA
1 TTTTATTTA
190158 TTTTATTTA
1 TTTTATTTA
190167 TTTTATTTA
1 TTTTATTTA
190176 -TTTATTTA
1 TTTTATTTA
190184 TTTT
1 TTTT
190188 TTATGCATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
8 8 0.23
9 27 0.77
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTATTTA
Found at i:190167 original size:13 final size:13
Alignment explanation
Indices: 190144--190187 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
190134 CAGGTTTTTT
190144 TTTTAATTTATTTA
1 TTTT-ATTTATTTA
190158 TTTTATTTATTT-
1 TTTTATTTATTTA
190170 TATTTATTTATTTA
1 T-TTTATTTATTTA
190184 TTTT
1 TTTT
190188 TTATGCATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 1 0.04
13 22 0.79
14 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:190257 original size:6 final size:6
Alignment explanation
Indices: 190223--190249 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
190213 ATTATTATTT
190223 TTTGAA TTTGAA TTTGAA TTTGAA TTT
1 TTTGAA TTTGAA TTTGAA TTTGAA TTT
190250 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTGAA
Found at i:190964 original size:55 final size:55
Alignment explanation
Indices: 190881--191411 Score: 652
Period size: 55 Copynumber: 9.4 Consensus size: 55
190871 ATAAAGTGTA
* *
190881 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * * *
190936 TCCTGCTCTTTGAGAACTTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
190991 TCCTGCTCTTTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
191047 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGTG
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* *
191107 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
191163 TCCTGCTCTTTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
191219 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
191274 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTCTAAAAGGAAAAGGTG
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCT-T----TG-AAAGGCG
* * * *
191335 TCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTCGTGTGGGTTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
191390 TCCTGCTCTTTGAGGACTAAAA
1 TCCTGCTCTTTGAGGACTAAAA
191412 GGGTGAAAGG
Statistics
Matches: 418, Mismatches: 41, Indels: 35
0.85 0.08 0.07
Matches are distributed among these distances:
54 27 0.06
55 169 0.40
56 124 0.30
57 1 0.00
59 1 0.00
60 26 0.06
61 42 0.10
62 28 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:191161 original size:172 final size:166
Alignment explanation
Indices: 190881--191413 Score: 746
Period size: 172 Copynumber: 3.1 Consensus size: 166
190871 ATAAAGTGTA
* * *
190881 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
190946 TGAGAACTTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
191011 AAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
131 AAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
* *
191047 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCT
** *
191111 GCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
60 GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
191176 GGACTAAAAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
124 GGACTAAAAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
* *
191219 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* *
191284 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTCTAAAAGGAAAAGGTGTCCTGCTCTTTGAG
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG--CA----TCCTGCTCTTTGAG
* ** * * *
191349 GACTAGAAAA-TGCCACCAACTCGTGTGGGTTTTAAAAGGCA
125 GACTAAAAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
191390 TCCTGCTCTTTGAGGACTAAAAGG
1 TCCTGCTCTTTGAGGACTAAAAGG
191414 GTGAAAGGAG
Statistics
Matches: 327, Mismatches: 26, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
165 25 0.08
166 50 0.15
167 23 0.07
168 1 0.00
170 1 0.00
171 71 0.22
172 129 0.39
173 27 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (166 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
AAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCG
Found at i:191175 original size:227 final size:227
Alignment explanation
Indices: 190881--191413 Score: 847
Period size: 227 Copynumber: 2.4 Consensus size: 227
190871 ATAAAGTGTA
* *
190881 TCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCT
1 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCT
* * *
190945 TTGAGAACTTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTA
66 TTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT-
* *
191010 AAAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCC
130 AAAAAGTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCC
* *
191074 ACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGTG
195 ACCAACTTGTGTGGGCTCTAAAAGGAAAAGGTG
* *
191107 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCT
** * * *
191172 TTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
66 TTGAGGACT-AAAAGGTGCCACCAACTCATGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
* * *
191237 GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCC
130 AAAAAGTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCC
191302 ACCAACTTGTGTGGGCTCTAAAAGGAAAAGGTG
195 ACCAACTTGTGTGGGCTCTAAAAGGAAAAGGTG
*
191335 TCCTGCTCTTTGAGGACTAG-AAAATGCCACCAACTCGTGTGGGTTTTAAAAGGCATCCTGCTCT
1 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCT
191399 TTGAGGACTAAAAGG
66 TTGAGGACTAAAAGG
191414 GTGAAAGGAG
Statistics
Matches: 280, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
226 23 0.08
227 149 0.53
228 108 0.39
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (227 bp):
TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCT
TTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTA
AAAAGTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCA
CCAACTTGTGTGGGCTCTAAAAGGAAAAGGTG
Found at i:191297 original size:26 final size:26
Alignment explanation
Indices: 191210--191297 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
191200 ATGTGGGCTT
*
191210 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGCGTCCTACTCTTTGAGGAC
* * * *
191236 TGAAAGGTG-CC-ACCAACTTGTGTGGGC
1 TGAAAGGCGTCCTA-C-TCTT-TGAGGAC
191263 TTTGAAAGGCGTCCTACTCTTTGAGGAC
1 --TGAAAGGCGTCCTACTCTTTGAGGAC
191291 TGAAAGG
1 TGAAAGG
191298 TGCCACCAAC
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
25 3 0.07
26 18 0.39
27 5 0.11
28 5 0.11
29 11 0.24
30 3 0.07
31 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (26 bp):
TGAAAGGCGTCCTACTCTTTGAGGAC
Found at i:191494 original size:95 final size:95
Alignment explanation
Indices: 191334--191544 Score: 352
Period size: 95 Copynumber: 2.2 Consensus size: 95
191324 AGGAAAAGGT
*
191334 GTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTAAAAGGCATCCTGCTCT
1 GTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTAAAAGGCATCCTACTCT
191399 TTGAGGACTAAAAGGGTGAAAGGAGAGAGC
66 TTGAGGACTAAAAGGGTGAAAGGAGAGAGC
* * * *
191429 GTCCTGCTTTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGTTTTGAAAGGCGTCCTACTC
1 GTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTCGTGTGGGTTTTAAAAGGCATCCTACTC
*
191493 TTTGGGGACTAAAAGGGTGAAAGGAGAGAGC
65 TTTGAGGACTAAAAGGGTGAAAGGAGAGAGC
191524 GTCCTGCTCTTTGAGGACTAG
1 GTCCTGCTCTTTGAGGACTAG
191545 GAAAGTAGAA
Statistics
Matches: 107, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
94 5 0.05
95 101 0.94
96 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (95 bp):
GTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTAAAAGGCATCCTACTCT
TTGAGGACTAAAAGGGTGAAAGGAGAGAGC
Found at i:198524 original size:10 final size:10
Alignment explanation
Indices: 198509--198535 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
198499 ATGTATCAAG
198509 CAAAAACAAA
1 CAAAAACAAA
198519 CAAAAACAAA
1 CAAAAACAAA
198529 CAAAAAC
1 CAAAAAC
198536 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:202754 original size:13 final size:13
Alignment explanation
Indices: 202736--202760 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
202726 CAAAGATCAG
202736 TGTATCGATACAA
1 TGTATCGATACAA
202749 TGTATCGATACA
1 TGTATCGATACA
202761 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:202841 original size:13 final size:13
Alignment explanation
Indices: 202823--202847 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
202813 CAAAAAAACA
202823 TGTATCGATACAT
1 TGTATCGATACAT
202836 TGTATCGATACA
1 TGTATCGATACA
202848 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:202946 original size:21 final size:21
Alignment explanation
Indices: 202905--202946 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
202895 GTTGGGACCT
* *
202905 TGTATTGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
202926 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
202947 AAATGTAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:203607 original size:13 final size:13
Alignment explanation
Indices: 203589--203613 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
203579 CATAAAGTGT
203589 TGTATCGATACAA
1 TGTATCGATACAA
203602 TGTATCGATACA
1 TGTATCGATACA
203614 TGTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:203694 original size:13 final size:13
Alignment explanation
Indices: 203676--203700 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
203666 ATCACTTAAA
203676 TGTATCGATACAT
1 TGTATCGATACAT
203689 TGTATCGATACA
1 TGTATCGATACA
203701 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:214751 original size:79 final size:79
Alignment explanation
Indices: 214618--215159 Score: 872
Period size: 79 Copynumber: 6.9 Consensus size: 79
214608 AAAATAAAAT
* * *
214618 CGGGGTTAGAGTATCCTCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTA-
214683 TCCC-TC-AGAAATAA
65 TCCCTTCGA-AAATAA
* *
214697 CAGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
214762 CCCTTCGGAAATAA
66 CCCTTCGAAAATAA
* * *
214776 CGGGGTTGGAGTTTCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
214841 CCCCTCGAAAATAA
66 CCCTTCGAAAATAA
* * * *
214855 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAAAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
214920 CCCTTCGAAAATAA
66 CCCTTCGAAAATAA
* * *
214934 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGAGATTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
214999 CCCTTCGAAAATAA
66 CCCTTCGAAAATAA
*
215013 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
215078 CCCTTCGGAAATAA
66 CCCTTCGAAAATAA
*
215092 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
215157 CCC
66 CCC
215160 CGATTAAAGG
Statistics
Matches: 426, Mismatches: 35, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
78 4 0.01
79 422 0.99
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCTTCGAAAATAA
Found at i:215398 original size:28 final size:28
Alignment explanation
Indices: 215342--215423 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
215332 GAAATAAAGC
*** **
215342 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
215370 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
215398 CGAGGTTGGAGTATCCTCGATTGAAA
1 CGGGGTTGGAGTATCCCCGA-TGAAA
215424 AATTGGTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 41 0.89
29 5 0.11
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:215531 original size:51 final size:50
Alignment explanation
Indices: 215092--215531 Score: 281
Period size: 51 Copynumber: 8.6 Consensus size: 50
215082 TCGGAAATAA
* * *
215092 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTT-AGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTA-GAGAAATTGGTGTTTTGA-AAATAAAAC
*
215143 CGGGGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTAGA-GAAATTGGTGTTTTGAAAATAAAAC
* *
215194 CAGGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTGTTTTG------AAAC
1 CGGGGTTGGAGTATCCCCGATTAGA-GAAA-TTGGTGTTTTGAAAATAAAAC
* * * *
215240 CGGGTTTAGAGTATCCCCGATTATG-GAAAGTTAGTGTTTT-AGAAATGAAAC
1 CGGGGTTGGAGTATCCCCGATTA-GAGAAA-TTGGTGTTTTGA-AAATAAAAC
* * *** * * *
215291 CGGGGTTGGAGTATCCCCCATTAAGAAAAATCAATATTTTGGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATT-AGAGAAATTGGTGTTTTGAAAATAAAAC
* *** * * ***** *
215342 CGGGGTTGGAGTATCCCCTCGGAGGTA-ACGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTAT-CCC-C-GA-TTAGA-GAAATTGGTGTTTTGAAAAT-AAA-AC
* * * * * *
215398 CGAGGTTGGAGTATCCTCGATT-GAAAAATTGGTATTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTAGAGAAATTGGT-GTTTTGAAAATAAAAC
* *
215448 CGGAGTTGGAGTATCCCCGATTAAAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTAGA-GAAATTGGTGTTTTGAAAATAAAAC
*
215499 CGGGGTTGGAGTATCCCCGATTATGAGCAATTG
1 CGGGGTTGGAGTATCCCCGATTA-GAGAAATTG
215532 AGAAGCTTAA
Statistics
Matches: 296, Mismatches: 67, Indels: 52
0.71 0.16 0.13
Matches are distributed among these distances:
45 13 0.04
46 24 0.08
50 21 0.07
51 173 0.58
52 34 0.11
53 4 0.01
54 8 0.03
55 6 0.02
56 13 0.04
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (50 bp):
CGGGGTTGGAGTATCCCCGATTAGAGAAATTGGTGTTTTGAAAATAAAAC
Found at i:216528 original size:43 final size:43
Alignment explanation
Indices: 216470--216555 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
216460 TCTCGTTGGA
216470 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
*
216513 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
216556 AGAGTTGCTG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.07, C:0.22, G:0.40, T:0.31
Consensus pattern (43 bp):
GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
Found at i:217072 original size:26 final size:26
Alignment explanation
Indices: 216922--217075 Score: 283
Period size: 26 Copynumber: 6.0 Consensus size: 26
216912 TCCAATTGCA
216922 ATTTT-TATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
*
216947 ATTTTTTATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
216973 ATTTTCTATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
*
216999 ATTTTTTATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
217025 ATTTTCTATTTCCTTTCCCATGCTGC
1 ATTTTCTATTTCCTTTCCCATGCTGC
217051 ATTTTCTATTTCCTTTCCCATGCTG
1 ATTTTCTATTTCCTTTCCCATGCTG
217076 TAAGTTTTCA
Statistics
Matches: 125, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 5 0.04
26 120 0.96
ACGTcount: A:0.12, C:0.29, G:0.08, T:0.52
Consensus pattern (26 bp):
ATTTTCTATTTCCTTTCCCATGCTGC
Found at i:217114 original size:4 final size:4
Alignment explanation
Indices: 217107--217140 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
217097 TTTTTTTTTA
217107 ATTT ATTTT ATTT ATTT ATTTT ATTT ATTT ATTT
1 ATTT A-TTT ATTT ATTT A-TTT ATTT ATTT ATTT
217141 TATGCATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:217121 original size:9 final size:9
Alignment explanation
Indices: 217102--217143 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
217092 CAGGTTTTTT
217102 TTTTAATTTA
1 TTTT-ATTTA
217112 TTTTATTTA
1 TTTTATTTA
217121 -TTTATTT-
1 TTTTATTTA
217128 TATTTATTTA
1 T-TTTATTTA
217138 TTTTAT
1 TTTTAT
217144 GCATGAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.24
9 17 0.59
10 5 0.17
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTATTTA
Found at i:217123 original size:13 final size:13
Alignment explanation
Indices: 217107--217143 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
217097 TTTTTTTTTA
217107 ATTTATTTTATTT
1 ATTTATTTTATTT
217120 ATTTATTTTATTT
1 ATTTATTTTATTT
217133 ATTTATTTTAT
1 ATTTATTTTAT
217144 GCATGAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTATTTTATTT
Found at i:220417 original size:132 final size:131
Alignment explanation
Indices: 220176--220586 Score: 394
Period size: 130 Copynumber: 3.2 Consensus size: 131
220166 GATTATTGAT
** * * *
220176 AACAAGGTTAAAGTATCCCCAATTGAGAAAAATCGATATTTTAGAAATAAAACCAGGGTTGGAGT
1 AACAAGGTTGGAGTATCCCCAATGGTGGAAAATCGATATTTTAGAAATAAAACCAGGGTTGGAGT
* * * * * * * *
220241 A-CCCTTTAGGAATAATGGGGTTGGAGTAT-CCCTAAGATAAAAAAAAACTTAATGTTTT-GAAA
66 ATCCCTTCAGAAATAATAGGGTTGGAGTATCCCCGATGGT-GAAAAAAA-TCAATGTTTTAGAAA
220303 GTGAA
129 -T-AA
* *
220308 AACAAGGTTGGAGTATCCCCAATGGTGGAAAA-CGGATATTTTAGAGATAAAACCAGAGTTGGAG
1 AACAAGGTTGGAGTATCCCCAATGGTGGAAAATC-GATATTTTAGAAATAAAACCAGGGTTGGAG
*
220372 TATCCC-TCAGAAATAATAGGGTTGGAGTATCCCCGATGGTG--AAAAATCGATGTTTTAGAAAT
65 TATCCCTTCAGAAATAATAGGGTTGGAGTATCCCCGATGGTGAAAAAAATCAATGTTTTAGAAAT
220434 AA
130 AA
* * * * * **
220436 AATCAGGGTTGGAGTATCCCCAATGGTAGAAAATC-AGTGTATTAGACATAAAATTAGGGTTGGA
1 AA-CAAGGTTGGAGTATCCCCAATGGTGGAAAATCGA-TATTTTAGAAATAAAACCAGGGTTGGA
* * * *
220500 GTATCCCTTCAAAAATAA-CGAGGTTGGAGTATCCCCGATGGTG--AAAAATTAGTGTTTTAGAA
64 GTATCCCTTCAGAAATAATAG-GGTTGGAGTATCCCCGATGGTGAAAAAAATCAATGTTTTAGAA
220562 ATAA
128 ATAA
** *
220566 AACCGGGGTTAGAGTATCCCC
1 AA-CAAGGTTGGAGTATCCCC
220587 TCGAAAATAA
Statistics
Matches: 238, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
128 5 0.02
129 66 0.28
130 79 0.33
131 1 0.00
132 78 0.33
133 9 0.04
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.26
Consensus pattern (131 bp):
AACAAGGTTGGAGTATCCCCAATGGTGGAAAATCGATATTTTAGAAATAAAACCAGGGTTGGAGT
ATCCCTTCAGAAATAATAGGGTTGGAGTATCCCCGATGGTGAAAAAAATCAATGTTTTAGAAATA
A
Found at i:220453 original size:51 final size:51
Alignment explanation
Indices: 220389--220506 Score: 168
Period size: 51 Copynumber: 2.3 Consensus size: 51
220379 CAGAAATAAT
* *
220389 AGGGTTGGAGTATCCCCGATGGT-GAAAAATC-GATGTTTTAGAAATAAAATC
1 AGGGTTGGAGTATCCCCAATGGTAG-AAAATCAG-TGTATTAGAAATAAAATC
* *
220440 AGGGTTGGAGTATCCCCAATGGTAGAAAATCAGTGTATTAGACATAAAATT
1 AGGGTTGGAGTATCCCCAATGGTAGAAAATCAGTGTATTAGAAATAAAATC
220491 AGGGTTGGAGTATCCC
1 AGGGTTGGAGTATCCC
220507 TTCAAAAATA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
51 59 0.97
52 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (51 bp):
AGGGTTGGAGTATCCCCAATGGTAGAAAATCAGTGTATTAGAAATAAAATC
Found at i:220533 original size:79 final size:79
Alignment explanation
Indices: 220439--220610 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 79
220429 GAAATAAAAT
* ** *
220439 CAGGGTTGGAGTATCCCCAATGGT-AGAAAATCAGTGTATTAGACATAAAATTAGGGTTGGAGTA
1 CAGGGTTGGAGTATCCCCAATGGTGA-AAAATCAGTGTATTAGAAATAAAACCAGGGTTAGAGTA
*
220503 TCCCTTCAAAAATAA
65 TCCCCTCAAAAATAA
* * * *
220518 C-GAGGTTGGAGTATCCCCGATGGTGAAAAATTAGTGTTTTAGAAATAAAACCGGGGTTAGAGTA
1 CAG-GGTTGGAGTATCCCCAATGGTGAAAAATCAGTGTATTAGAAATAAAACCAGGGTTAGAGTA
*
220582 TCCCCTCGAAAATAA
65 TCCCCTCAAAAATAA
220597 CAGGGTTGGAGTAT
1 CAGGGTTGGAGTAT
220611 TCCCTCGAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 77 0.96
80 2 0.03
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (79 bp):
CAGGGTTGGAGTATCCCCAATGGTGAAAAATCAGTGTATTAGAAATAAAACCAGGGTTAGAGTAT
CCCCTCAAAAATAA
Found at i:220608 original size:28 final size:28
Alignment explanation
Indices: 220571--220642 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
220561 AATAAAACCG
*
220571 GGGTTAGAGTATCCCCTCGAAAATAACA
1 GGGTTGGAGTATCCCCTCGAAAATAACA
* *
220599 GGGTTGGAGTATTCCCTCGAAAATAATA
1 GGGTTGGAGTATCCCCTCGAAAATAACA
*
220627 GCGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
220643 GACGGTGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCTCGAAAATAACA
Found at i:220681 original size:107 final size:108
Alignment explanation
Indices: 220491--220717 Score: 309
Period size: 107 Copynumber: 2.1 Consensus size: 108
220481 ACATAAAATT
*
220491 AGGGTTGGAGTA-TCCCTTCAAAAATAACGAGGTTGGAGTATCCCCGATGGTGAAAAATTAGTGT
1 AGGGTTGGAGTATTCCCTTCAAAAATAACGAGGTTGGAGTATCCCCGACGGTGAAAAATTAGTGT
*
220555 TTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAAC
66 TTTAGAAATAAAACCGGGGTTAGAATATCCCCTCGAAAATAAC
* *
220598 AGGGTTGGAGTATTCCC-TCGAAAATAA-TAGCGTTGGAGTATCCCCGACGGTGAAAAATTTA-T
1 AGGGTTGGAGTATTCCCTTCAAAAATAACGAG-GTTGGAGTATCCCCGACGGTGAAAAA-TTAGT
** * * * *
220660 GTTTTAGAAATAAAATTGGGGTTGGAATGTCCTCTGGAAAATAAC
64 GTTTTAGAAATAAAACCGGGGTTAGAATATCCCCTCGAAAATAAC
*
220705 GGGGTTGGAGTAT
1 AGGGTTGGAGTAT
220718 CCCCGTTGAT
Statistics
Matches: 106, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
106 2 0.02
107 97 0.92
108 7 0.07
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (108 bp):
AGGGTTGGAGTATTCCCTTCAAAAATAACGAGGTTGGAGTATCCCCGACGGTGAAAAATTAGTGT
TTTAGAAATAAAACCGGGGTTAGAATATCCCCTCGAAAATAAC
Found at i:223135 original size:51 final size:51
Alignment explanation
Indices: 223051--223179 Score: 168
Period size: 51 Copynumber: 2.5 Consensus size: 51
223041 AAAAATGCCT
* * * ** *
223051 GAATGTATTGATATATTGAGAAATGTATTGATACATCTGGGTTAAAACCTA
1 GAATGTATTGATACAATGAAAAATGTACCGATACATCTGGGTTAAAACCCA
* *
223102 GAATATATTGATACAATGAAAAATGTACCGATACATTTGGGTTAAAACCCA
1 GAATGTATTGATACAATGAAAAATGTACCGATACATCTGGGTTAAAACCCA
**
223153 GAATGTATCAATACAATGAAAAATGTA
1 GAATGTATTGATACAATGAAAAATGTA
223180 TTGATACAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (51 bp):
GAATGTATTGATACAATGAAAAATGTACCGATACATCTGGGTTAAAACCCA
Found at i:223186 original size:51 final size:51
Alignment explanation
Indices: 223071--223187 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
223061 ATATATTGAG
* **
223071 AAATGTATTGATACATCTGGGTTAAAACCTAGAATATATTGATACAATGAA
1 AAATGTATTGATACATCTGGGTTAAAACCCAGAATATATCAATACAATGAA
** * *
223122 AAATGTACCGATACATTTGGGTTAAAACCCAGAATGTATCAATACAATGAA
1 AAATGTATTGATACATCTGGGTTAAAACCCAGAATATATCAATACAATGAA
223173 AAATGTATTGATACA
1 AAATGTATTGATACA
223188 AATAGTAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (51 bp):
AAATGTATTGATACATCTGGGTTAAAACCCAGAATATATCAATACAATGAA
Found at i:224720 original size:13 final size:13
Alignment explanation
Indices: 224702--224728 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
224692 ACATTATGCT
224702 TTGTATCGATACA
1 TTGTATCGATACA
224715 TTGTATCGATACA
1 TTGTATCGATACA
224728 T
1 T
224729 GAACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:224817 original size:13 final size:13
Alignment explanation
Indices: 224799--224823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
224789 CATGGGACAT
224799 TGTATCGATACAA
1 TGTATCGATACAA
224812 TGTATCGATACA
1 TGTATCGATACA
224824 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:224821 original size:33 final size:33
Alignment explanation
Indices: 224779--224843 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
224769 TACCACTGTT
224779 TGTATCGATACATG-GGACATTGTATCGATACAA
1 TGTATCGATACATGAGGA-ATTGTATCGATACAA
*
224812 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCGATACATGAGGAATTGTATCGATACA
224844 TTACTTCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATGAGGAATTGTATCGATACAA
Found at i:234100 original size:52 final size:52
Alignment explanation
Indices: 234022--234150 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
234012 CGAAATATGA
*
234022 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATGGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
234074 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
234126 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
234151 ATGTATCGAT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:234156 original size:13 final size:13
Alignment explanation
Indices: 234138--234163 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
234128 ATTTGCCTGC
234138 ATGTATCGATACA
1 ATGTATCGATACA
234151 ATGTATCGATACA
1 ATGTATCGATACA
234164 TTTGAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:234243 original size:32 final size:32
Alignment explanation
Indices: 234204--234301 Score: 142
Period size: 32 Copynumber: 3.0 Consensus size: 32
234194 AGTAGCTTAT
* *
234204 ATTGTATCGATACAAAACTTATCTATCTATAC
1 ATTGTATCGATACAAAACTTATGTATCGATAC
*
234236 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTATGTATCGATAC
* *
234268 ATTGTATCAATACAATACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAC-TTATGTATCGATAC
234301 A
1 A
234302 AATCGTTGAA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 45 0.75
33 15 0.25
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (32 bp):
ATTGTATCGATACAAAACTTATGTATCGATAC
Found at i:235101 original size:43 final size:43
Alignment explanation
Indices: 235040--235178 Score: 156
Period size: 43 Copynumber: 3.1 Consensus size: 43
235030 TAAAGATGGA
*
235040 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
235083 AAAGGTGCTAATGTGCTGATTCAAGGCCAGCTACT-TTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-TATTGGACTT
* *
235126 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAG-TGACATTAGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCT-ATATTGGACTT
235175 AAAG
1 AAAG
235179 ATAAATATGA
Statistics
Matches: 82, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
43 42 0.51
44 1 0.01
45 1 0.01
47 1 0.01
48 1 0.01
49 36 0.44
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:235156 original size:49 final size:49
Alignment explanation
Indices: 234996--235180 Score: 231
Period size: 49 Copynumber: 3.8 Consensus size: 49
234986 AAAATGATGT
*
234996 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* *
235048 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
235091 TAATGTGCTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
235140 CAATGTGCTGATTCAAGGCCAG-TGACATTAGACTTAAAGAT
1 CAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGAT
235181 AAATATGAGA
Statistics
Matches: 116, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
43 38 0.33
47 1 0.01
48 2 0.02
49 43 0.37
52 32 0.28
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:235335 original size:52 final size:51
Alignment explanation
Indices: 235191--235446 Score: 230
Period size: 49 Copynumber: 5.1 Consensus size: 51
235181 AAATATGAGA
* * * * * * * *
235191 AAAG-TGATAAAGATGCCAATATGTTGATTCACGACCAACGATATTGGGCTT
1 AAAGATGA-AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
235242 AAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATATTGAACTT
1 AAAGAT--G-AAAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
235297 AAAGATGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T
1 AAAGATG-AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
235348 -----T--AAAGGTGCCAATGTACTGATTCAAGGCCAGCTACT-TTGGACTT
1 AAAGATGAAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-TATTGGACTT
* * *
235392 AAAGATG--AAGGTGCCAATGTGCTGATTCAAGACCAGCGACATTGGACTT
1 AAAGATGAAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
235441 AAAGAT
1 AAAGAT
235447 AAAGATGAGA
Statistics
Matches: 172, Mismatches: 19, Indels: 30
0.78 0.09 0.14
Matches are distributed among these distances:
43 37 0.22
44 2 0.01
46 1 0.01
49 44 0.26
51 5 0.03
52 34 0.20
53 8 0.05
54 5 0.03
55 36 0.21
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (51 bp):
AAAGATGAAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:235368 original size:43 final size:43
Alignment explanation
Indices: 235306--235444 Score: 163
Period size: 43 Copynumber: 3.1 Consensus size: 43
235296 TAAAGATGAA
*
235306 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
235349 AAAGGTGCCAATGTACTGATTCAAGGCCAGCTACT-TTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-TATTGGACTT
* * *
235392 AAAGATGAAGGTGCCAATGTGCTGATTCAAGACCAGCGACATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
235441 AAAG
1 AAAG
235445 ATAAAGATGA
Statistics
Matches: 82, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
43 42 0.51
44 1 0.01
45 1 0.01
47 1 0.01
49 37 0.45
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:235380 original size:95 final size:93
Alignment explanation
Indices: 235253--235444 Score: 271
Period size: 92 Copynumber: 2.0 Consensus size: 93
235243 AAGATGAGAA
* *
235253 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTA-TATTGAACTTAAAGATGAAAAAGGTGCCAA
1 AAAGGATGCCAATGTACTGATTCAAGGCCAGCTACT-TTGAACTTAAAGATG---AAGGTGCCAA
* * *
235317 TATGCTGATTCAAGGCCAGCTATATTGGACTT
62 TATGCTGATTCAAGACCAGCGACATTGGACTT
* *
235349 AAAGG-TGCCAATGTACTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGCCAATGTG
1 AAAGGATGCCAATGTACTGATTCAAGGCCAGCTACTTTGAACTTAAAGATGAAGGTGCCAATATG
235413 CTGATTCAAGACCAGCGACATTGGACTT
66 CTGATTCAAGACCAGCGACATTGGACTT
235441 AAAG
1 AAAG
235445 ATAAAGATGA
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
92 42 0.48
95 40 0.45
96 6 0.07
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (93 bp):
AAAGGATGCCAATGTACTGATTCAAGGCCAGCTACTTTGAACTTAAAGATGAAGGTGCCAATATG
CTGATTCAAGACCAGCGACATTGGACTT
Found at i:235401 original size:266 final size:265
Alignment explanation
Indices: 234882--235696 Score: 1339
Period size: 266 Copynumber: 3.1 Consensus size: 265
234872 CCACTGTACA
* * * * * * * *
234882 GATTCAAGGCCTGCAACACT-GAACTTAAAGATGATGAGGATGAAGAGTGATAAAAAGACCAATA
1 GATTCAAGGCCAGCGACATTAG-ACTTAAAGATAAAGATGA-GAAAAGTGATAAAATG-CCAATA
* * *
234946 CGTTGATTCACGGCCAATGATATTGGG-TTCAAAGATGAGAAAAATGATGTCAATGTGCTGATTC
63 TGTTGATTCACGGCCAACGATATTGGGCTT-AAAGATGAGAAAAAGGATGTCAATGTGCTGATTC
* *
235010 AAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA
127 AAGGCCAGCTATATTGAACTTAAAGATGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA
*
235075 TTGGACTTAAAGGTGCTAATGTGCTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGC
192 TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGC
235140 CAATGTGCT
257 CAATGTGCT
* *
235149 GATTCAAGGCCAGTGACATTAGACTTAAAGATAAATATGAGAAAAGTGATAAAGATGCCAATATG
1 GATTCAAGGCCAGCGACATTAGACTTAAAGATAAAGATGAGAAAAGTGATAAA-ATGCCAATATG
*
235214 TTGATTCACGACCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAG
65 TTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAG
235279 GCCAGCTATATTGAACTTAAAGATGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
130 GCCAGCTATATTGAACTTAAAGATGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
*
235344 GACTTAAAGGTGCCAATGTACTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGCCAA
195 GACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGCCAA
235409 TGTGCT
260 TGTGCT
* *
235415 GATTCAAGACCAGCGACATTGGACTTAAAGATAAAGATGAGAAAAGTGATAAATATGCCAATATG
1 GATTCAAGGCCAGCGACATTAGACTTAAAGATAAAGATGAGAAAAGTGATAAA-ATGCCAATATG
235480 TTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAG
65 TTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAG
235545 GCCAGCTATATTGAACTTAAAGATGGAAAAA-GTGCCAATATGCTGATTCAAGGCCAGCTATATT
130 GCCAGCTATATTGAACTTAAAGAT-GAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
*
235609 GGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
194 GGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGCCA
**
235674 ATACGCT
259 ATGTGCT
235681 GATTCAAGGCCAGCGA
1 GATTCAAGGCCAGCGA
235697 TATTGGGCTT
Statistics
Matches: 515, Mismatches: 29, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
266 474 0.92
267 40 0.08
268 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (265 bp):
GATTCAAGGCCAGCGACATTAGACTTAAAGATAAAGATGAGAAAAGTGATAAAATGCCAATATGT
TGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGG
CCAGCTATATTGAACTTAAAGATGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
ACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACTTTGGACTTAAAGATGAAGGTGCCAAT
GTGCT
Found at i:235422 original size:49 final size:49
Alignment explanation
Indices: 235262--235446 Score: 231
Period size: 49 Copynumber: 3.8 Consensus size: 49
235252 AAAAGGATGT
*
235262 CAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGAAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG---AAGGTGC
*
235314 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
235357 CAATGTACTGATTCAAGGCCAGCTACT-TTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTA-TATTGGACTTAAAGATGAAGGTGC
* * *
235406 CAATGTGCTGATTCAAGACCAGCGACATTGGACTTAAAGAT
1 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT
235447 AAAGATGAGA
Statistics
Matches: 117, Mismatches: 8, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
43 38 0.32
44 1 0.01
47 1 0.01
48 1 0.01
49 43 0.37
52 33 0.28
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
Found at i:235565 original size:55 final size:52
Alignment explanation
Indices: 235470--235707 Score: 239
Period size: 43 Copynumber: 4.8 Consensus size: 52
235460 GTGATAAATA
* * * * *
235470 TGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-GAAAAA-G
* * *
235524 ATGTCAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGGAAAAAG
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAAG
235577 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-----G
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAAG
* * *
235620 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAAG
* * *
235669 TGCCAATACGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
235708 GAAGGGTTGC
Statistics
Matches: 159, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
43 37 0.23
44 2 0.01
45 1 0.01
46 1 0.01
48 1 0.01
49 35 0.22
50 1 0.01
51 2 0.01
52 35 0.22
53 1 0.01
54 6 0.04
55 37 0.23
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (52 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAAG
Found at i:235719 original size:95 final size:94
Alignment explanation
Indices: 235519--235712 Score: 284
Period size: 95 Copynumber: 2.1 Consensus size: 94
235509 AAGATGAGAA
* *
235519 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGGAAAAAGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG-AAAAGTGCCAAT
* *
235584 ATGCTGATTCAAGGCCAGCTATATTGGACTT
64 ACGCTGATTCAAGGCCAGCGATATTGGACTT
* *
235615 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AAGGTGCCAATAC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGTGCCAATAC
*
235678 GCTGATTCAAGGCCAGCGATATTGGGCTT
66 GCTGATTCAAGGCCAGCGATATTGGACTT
235707 AGAAGG
1 A-AAGG
235713 GTTGCCACCG
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
92 39 0.43
93 4 0.04
94 1 0.01
95 41 0.46
96 5 0.06
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (94 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGTGCCAATAC
GCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:235749 original size:33 final size:33
Alignment explanation
Indices: 235707--236169 Score: 687
Period size: 33 Copynumber: 14.2 Consensus size: 33
235697 TATTGGGCTT
*
235707 AGAAGGGTTGCCACCGACTTGTGTGGGCGTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
235740 AGAATGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
235773 AG-AGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
235805 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
235838 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
235871 AGAAGGGTTACCACCAACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
235903 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
235935 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
235967 AGAAGGGTTGCCACCGACTTGAGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
236000 A-AGGAGGTTGCCACAGACTTGTGTGGGCTTT-G
1 AGAAG-GGTTGCCACCGACTTGTGTGGGCTTTAG
* * *
236032 AGAAGGGTTGTCACCGACTTGAGTAGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
236065 A-AGGAGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAG-GGTTGCCACCGACTTGTGTGGGCTTTAG
*
236098 AAGAA-GGTTGCCACCGACTTGTGTGGG-TTTTG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
236130 GGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
236163 AG-AGGGT
1 AGAAGGGT
236170 AAAAGAATGC
Statistics
Matches: 391, Mismatches: 27, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
31 3 0.01
32 184 0.47
33 201 0.51
34 2 0.01
35 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:235786 original size:65 final size:65
Alignment explanation
Indices: 235707--236169 Score: 681
Period size: 65 Copynumber: 7.1 Consensus size: 65
235697 TATTGGGCTT
* *
235707 AGAAGGGTTGCCACCGACTTGTGTGGGCGTTAGAGAATGGTTGCCACCAACTTGTGTGGGCTTTA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA-GGTTGCCACCGACTTGTGTGGGCTTTA
235772 G
65 G
235773 AG-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAGGTTGCCACCGACTTGTGTGGGCTTTA
235837 G
65 G
* *
235838 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTACCACCAACTTGTGTGGGCTTT-
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA-GGTTGCCACCGACTTGTGTGGGCTTTA
235902 G
65 G
235903 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTGTGTGGGCTTT-
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA-GGTTGCCACCGACTTGTGTGGGCTTTA
235966 G
65 G
* * *
235967 AGAAGGGTTGCCACCGACTTGAGTGGGCTTTAGAAGGAGGTTGCCACAGACTTGTGTGGGCTTT-
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAGGTTGCCACCGACTTGTGTGGGCTTTA
236031 G
65 G
* * * *
236032 AGAAGGGTTGTCACCGACTTGAGTAGGCTTTAGAAGGAGGTTGCCACCGACTTGTGTGGGCTTTA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAGGTTGCCACCGACTTGTGTGGGCTTTA
236097 G
65 G
* *
236098 AAGAA-GGTTGCCACCGACTTGTGTGGG-TTTTGGGAAGGGTTGCCACCGACTTGTGTGGGCTTT
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA-GGTTGCCACCGACTTGTGTGGGCTTT
236161 AG
64 AG
236163 AG-AGGGT
1 AGAAGGGT
236170 AAAAGAATGC
Statistics
Matches: 370, Mismatches: 18, Indels: 20
0.91 0.04 0.05
Matches are distributed among these distances:
63 1 0.00
64 68 0.18
65 214 0.58
66 83 0.22
67 4 0.01
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.27
Consensus pattern (65 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:235912 original size:98 final size:97
Alignment explanation
Indices: 235700--236169 Score: 711
Period size: 98 Copynumber: 4.8 Consensus size: 97
235690 CCAGCGATAT
* * *
235700 TGGGC-TTAGAAG-GGTTGCCACCGACTTGTGTGGGCGTTAGAGAATGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTGTGGGC-TTTGAGAAGGGTTGCCACCGACTTGTG
235763 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
65 TGGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
235795 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1 TGGGCTTTAGAAG-AGGTTGCCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTGT
* *
235860 GTGGGCTTTAGAGAAGGGTTACCACCAACTTGTG
64 GTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
235894 TGGGCTTTGAGAAG-GGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTT-AGAAGAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
*
235958 TGGGCTTT-GAGAAGGGTTGCCACCGACTTGAG
65 TGGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
* * *
235990 TGGGCTTTAGAAGGAGGTTGCCACAGACTTGTGTGGGCTTTGAGAAGGGTTGTCACCGACTTGAG
1 TGGGCTTTAGAA-GAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
* *
236055 TAGGCTTTAGA-AGGAGGTTGCCACCGACTTGTG
65 TGGGCTTTAGAGAAG-GGTTGCCACCGACTTGTG
* *
236088 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGTTTTGGGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAG-AGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
236153 TGGGCTTTAGAG-AGGGT
65 TGGGCTTTAGAGAAGGGT
236170 AAAAGAATGC
Statistics
Matches: 342, Mismatches: 21, Indels: 22
0.89 0.05 0.06
Matches are distributed among these distances:
95 9 0.03
96 37 0.11
97 94 0.27
98 171 0.50
99 26 0.08
100 5 0.01
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (97 bp):
TGGGCTTTAGAAGAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGT
GGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
Found at i:236207 original size:27 final size:27
Alignment explanation
Indices: 236169--236224 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
236159 TTAGAGAGGG
* *
236169 TAAAAGAATGCCACGGAGTTGTGGGCT
1 TAAAAGAATGCCACGAAGTTGTGGACT
*
236196 TAAAAGAGTGCCACGAAGTTGTGGACT
1 TAAAAGAATGCCACGAAGTTGTGGACT
236223 TA
1 TA
236225 GAAGGAACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.23
Consensus pattern (27 bp):
TAAAAGAATGCCACGAAGTTGTGGACT
Found at i:236406 original size:34 final size:33
Alignment explanation
Indices: 236197--236482 Score: 184
Period size: 34 Copynumber: 8.8 Consensus size: 33
236187 TTGTGGGCTT
* *
236197 AAAAGAGTGCCAC-GAAGTTGTGGACTTAGAAGGA
1 AAAAG-GTGCCACAG-AGTTGTGGACTTAAAAAGA
* * *
236231 ACAAGGTGCCACAGAGTTGTGGGCTTTAAAAGGGA
1 AAAAGGTGCCACAGAGTTGTGGAC-TTAAAA-AGA
* *
236266 AAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAG-
1 AAAAG-GTGCCACAGAGTTGTGGAC-TTAAAAAGA
* * **
236300 --AAGGTGCCACAGAGTCGCGGACTTTGAAAG-
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
* * * *
236330 -GAAGGTGCCACGGAGTCGTGGACTT-AAAAGG
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
** *
236361 AATGGGATGCCACAGAGTTGTGGCCTTTAAAAAGA
1 AAAAGG-TGCCACAGAGTTGTGGAC-TTAAAAAGA
* * *
236396 AAAAGGTGCCACGGAGTTGTGGACTTAGAAGGA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
* * *
236429 AAAAGAATGCCACGGAGTTGTGGGCTT-AAAAG-
1 AAAAG-GTGCCACAGAGTTGTGGACTTAAAAAGA
236461 ----GGTGCCACAGAGTTGTGGACTT
1 AAAAGGTGCCACAGAGTTGTGGACTT
236483 TGCAGAAAAG
Statistics
Matches: 207, Mismatches: 34, Indels: 29
0.77 0.13 0.11
Matches are distributed among these distances:
27 18 0.09
28 1 0.00
30 10 0.05
31 38 0.18
32 5 0.02
33 46 0.22
34 47 0.23
35 17 0.08
36 25 0.12
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.20
Consensus pattern (33 bp):
AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
Found at i:236458 original size:67 final size:68
Alignment explanation
Indices: 236197--236459 Score: 263
Period size: 67 Copynumber: 4.0 Consensus size: 68
236187 TTGTGGGCTT
* * *
236197 AAAAGAGTGCCACGAAGTTGTGGACTTAGAAGGAACAAGGTGCCACAGAGTTGTGGGCTTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTAAAA
*
236262 GGGA
66 -AGA
* * * * * * * * *
236266 AAAAGAGTGCCACAGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACAGAGTCGCGGACTTT-GAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTAAAA
236328 AG-
66 AGA
* * * *** *
236330 -GAAG-GTGCCACGGAGTCGTGGACTTAAAAGGAATGGGATGCCACAGAGTTGTGGCCTTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTAAAA
236393 AGA
66 AGA
*
236396 AAAAG-GTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAATGCCACGGAGTTGTGGGC-TTAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAG-ATGCCACAGAGTTGTGGGCTTTAAA
236459 A
65 A
236460 GGGTGCCACA
Statistics
Matches: 156, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
62 20 0.13
63 3 0.02
64 21 0.13
65 5 0.03
66 2 0.01
67 61 0.39
68 17 0.11
69 27 0.17
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (68 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTAAAA
AGA
Found at i:236461 original size:131 final size:129
Alignment explanation
Indices: 236170--236482 Score: 368
Period size: 131 Copynumber: 2.4 Consensus size: 129
236160 TAGAGAGGGT
* *
236170 AAAAGAATGCCACGGAGTTGTGGGCTTAAAAGA-GTGCCACGAAGTTGTGGACTTAGAAGGAACA
1 AAAAGAATGCCACGGAGTTGTGGGCTTAAAAGAGGTGCCACGGAGTTGTGGACTTAAAAGGAACA
* * * *
236234 AGGTGCCACAGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAA
66 AGGTGCCACAGAGTTGTGGCCTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGACTTAGAAA
* * * * * * * *
236298 AGAAG-GTGCCACAGAGTCGCGGACTTTGAAAGGAAGGTGCCACGGAGTCGTGGACTTAAAAGGA
1 AAAAGAATGCCACGGAGTTGTGGGC-TT-AAAAG-AGGTGCCACGGAGTTGTGGACTTAAAAGGA
** *
236362 A-TGGGATGCCACAGAGTTGTGGCCTTTAAAA-AGAAAAAG-GTGCCACGGAGTTGTGGACTTAG
63 ACAAGG-TGCCACAGAGTTGTGGCCTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGACTTAG
236424 AAGGA
127 AA--A
*
236429 AAAAGAATGCCACGGAGTTGTGGGCTTAAAAG-GGTGCCACAGAGTTGTGGACTT
1 AAAAGAATGCCACGGAGTTGTGGGCTTAAAAGAGGTGCCACGGAGTTGTGGACTT
236483 TGCAGAAAAG
Statistics
Matches: 151, Mismatches: 26, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
127 14 0.09
128 26 0.17
129 26 0.17
130 14 0.09
131 57 0.38
132 14 0.09
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.20
Consensus pattern (129 bp):
AAAAGAATGCCACGGAGTTGTGGGCTTAAAAGAGGTGCCACGGAGTTGTGGACTTAAAAGGAACA
AGGTGCCACAGAGTTGTGGCCTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGACTTAGAAA
Found at i:236467 original size:95 final size:90
Alignment explanation
Indices: 236265--236483 Score: 217
Period size: 95 Copynumber: 2.3 Consensus size: 90
236255 TTTAAAAGGG
* * * *
236265 AAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTCGCGGACTTTGAAAG
1 AAAAAGGGTGCCACAGAGTTGTGGACTTTAAAAAGAAGGTGCCACAGAGTCGCGGACTTAGAAAG
*
236330 GAAGGTGCCACGGAGTCGTGGACTT
66 GAAGATGCCACGGAGTCGTGGACTT
* * * *
236355 AAAAGGAATGGGATGCCACAGAGTTGTGGCCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
1 -AAA--AA-GGG-TGCCACAGAGTTGTGGACTTTAAAAAG---AAGGTGCCACAGAGTCGCGGAC
* *
236420 TTAG-AAGGAAAAAGAATGCCACGGAGTTGTGGGCTT
58 TTAGAAAGG---AAG-ATGCCACGGAGTCGTGGACTT
236456 -AAAAGGGTGCCACAGAGTTGTGGACTTT
1 AAAAAGGGTGCCACAGAGTTGTGGACTTT
236484 GCAGAAAAGG
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
91 3 0.03
93 2 0.02
94 2 0.02
95 45 0.42
96 3 0.03
97 6 0.06
98 22 0.21
99 2 0.02
100 3 0.03
101 18 0.17
ACGTcount: A:0.32, C:0.15, G:0.33, T:0.20
Consensus pattern (90 bp):
AAAAAGGGTGCCACAGAGTTGTGGACTTTAAAAAGAAGGTGCCACAGAGTCGCGGACTTAGAAAG
GAAGATGCCACGGAGTCGTGGACTT
Found at i:236499 original size:32 final size:32
Alignment explanation
Indices: 236216--236707 Score: 283
Period size: 32 Copynumber: 15.5 Consensus size: 32
236206 CCACGAAGTT
* *
236216 GTGGACTTAGAAGGAACAAGG-TGCCACAGAGTT
1 GTGGACTTTGAA-GAA-AAGGATGCCACAGAGTC
* * * *
236249 GTGGGCTTTAAAAGGGAAAAAGAGTGCCACAGAGTT
1 GTGGACTTT-GAA--GAAAAGGA-TGCCACAGAGTC
*
236285 GTGGGCTTTGAA-AAGAAGG-TGCCACAGAGTC
1 GTGGACTTTGAAGAA-AAGGATGCCACAGAGTC
* * *
236316 GCGGACTTTGAA-AGGAAGG-TGCCACGGAGTC
1 GTGGACTTTGAAGA-AAAGGATGCCACAGAGTC
** ** *
236347 GTGGACTTAAAAGGAATGGGATGCCACAGAGTT
1 GTGGACTTTGAA-GAAAAGGATGCCACAGAGTC
* * * *
236380 GTGGCCTTTAAAAAGAAAAAGG-TGCCACGGAGTT
1 GTGGACTTT--GAAG-AAAAGGATGCCACAGAGTC
* * * *
236414 GTGGACTTAGAAGGAAAAAGAATGCCACGGAGTT
1 GTGGACTTTGAA-G-AAAAGGATGCCACAGAGTC
* * *
236448 GTGGGC-TT----AAAAGGGTGCCACAGAGTT
1 GTGGACTTTGAAGAAAAGGATGCCACAGAGTC
*
236475 GTGGACTTTGCAGAAAAGGATGCCACTA-AGTC
1 GTGGACTTTGAAGAAAAGGATGCCAC-AGAGTC
* ** *
236507 ATGGACTTTG-AGACAAAATATGCCACTGAGTC
1 GTGGACTTTGAAGA-AAAGGATGCCACAGAGTC
**
236539 GTGGACTTTGAAGAAAAGGATGCCATTGAGTC
1 GTGGACTTTGAAGAAAAGGATGCCACAGAGTC
*
236571 GTGGACTTTG-AGACAAA--ATGCCACTGAGTC
1 GTGGACTTTGAAGA-AAAGGATGCCACAGAGTC
*
236601 GTGGACTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTGAAGAAAAGGATGCCACAGAGTC
236633 GTGGACTTTG-AGACAAA--ATGCCACTA-AGTC
1 GTGGACTTTGAAGA-AAAGGATGCCAC-AGAGTC
* * * * *
236663 ATGGGCGTTG-AGAAGA-GATTGCCACTGAGTC
1 GTGGACTTTGAAGAAAAGGA-TGCCACAGAGTC
236694 GTGGACTTT-AAGAA
1 GTGGACTTTGAAGAA
236708 GGTATTTGAC
Statistics
Matches: 372, Mismatches: 54, Indels: 68
0.75 0.11 0.14
Matches are distributed among these distances:
27 21 0.06
28 2 0.01
29 2 0.01
30 47 0.13
31 78 0.21
32 107 0.29
33 40 0.11
34 41 0.11
35 13 0.03
36 21 0.06
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.21
Consensus pattern (32 bp):
GTGGACTTTGAAGAAAAGGATGCCACAGAGTC
Found at i:236608 original size:126 final size:123
Alignment explanation
Indices: 236463--236702 Score: 338
Period size: 126 Copynumber: 1.9 Consensus size: 123
236453 CTTAAAAGGG
* *
236463 TGCCACAGAGTTGTGGACTTTGCAGAAAAGGATGCCACTAAGTCATGGACTTTGAGACAAAATAT
1 TGCCACAGAGTCGTGGACTTTGAAGAAAAGGATGCCACTAAGTCATGGACTTTGAGAC-AAA-AT
* * * *
236528 GCCACTGAGTCGTGGACTTTGAAGAAAAGGA-TGCCATTGAGTCGTGGACTTTGAGACAAAA
64 GCCACTAAGTCATGGACGTTG-AGAAAA-GATTGCCACTGAGTCGTGGACTTTGAGACAAAA
* * *
236589 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAATGC
1 TGCCACAGAGTCGTGGACTTTGAAGAAAAGGATGCCACTAAGTCATGGACTTTGAGACAAAATGC
* *
236654 CACTAAGTCATGGGCGTTGAGAAGAGATTGCCACTGAGTCGTGGACTTT
66 CACTAAGTCATGGACGTTGAGAAAAGATTGCCACTGAGTCGTGGACTTT
236703 AAGAAGGTAT
Statistics
Matches: 102, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
122 2 0.02
123 25 0.25
124 19 0.19
125 3 0.03
126 53 0.52
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (123 bp):
TGCCACAGAGTCGTGGACTTTGAAGAAAAGGATGCCACTAAGTCATGGACTTTGAGACAAAATGC
CACTAAGTCATGGACGTTGAGAAAAGATTGCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:236619 original size:62 final size:62
Alignment explanation
Indices: 236463--236702 Score: 340
Period size: 62 Copynumber: 3.9 Consensus size: 62
236453 CTTAAAAGGG
* * * * *
236463 TGCCACAGAGTTGTGGACTTTGCAGAAAAGGATGCCACTAAGTCATGGACTTTGAGACAAAATA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAC-AAA-A
*
236527 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCATTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
236589 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* * * * *
236651 TGCCACTAAGTCATGGGCGTTG-AGAAGA-GATTGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGA-TGCCACTGAGTCGTGGACTTT
236703 AAGAAGGTAT
Statistics
Matches: 163, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
60 2 0.01
61 26 0.16
62 80 0.49
63 3 0.02
64 52 0.32
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (62 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:237674 original size:14 final size:13
Alignment explanation
Indices: 237655--237689 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
237645 TTTTTCCTTT
237655 TTTTTTTTGTTTG
1 TTTTTTTTGTTTG
*
237668 TTGTTTTTTTTTTG
1 TT-TTTTTTGTTTG
237682 TTTTTTTT
1 TTTTTTTT
237690 TTGTGAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (13 bp):
TTTTTTTTGTTTG
Found at i:237674 original size:25 final size:25
Alignment explanation
Indices: 237646--237693 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
237636 GAAAAGGGTT
237646 TTTTCCTTTTT-TTTTTTGTTTGTTG
1 TTTT-CTTTTTGTTTTTTGTTTGTTG
* *
237671 TTTTTTTTTTGTTTTTTTTTTGT
1 TTTTCTTTTTGTTTTTTGTTTGT
237694 GAAGATTAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.00, C:0.04, G:0.10, T:0.85
Consensus pattern (25 bp):
TTTTCTTTTTGTTTTTTGTTTGTTG
Found at i:237684 original size:11 final size:11
Alignment explanation
Indices: 237652--237693 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
237642 GGTTTTTTCC
237652 TTTTTTTT-TT
1 TTTTTTTTGTT
* *
237662 TGTTTGTTGTT
1 TTTTTTTTGTT
237673 TTTTTTTTGTT
1 TTTTTTTTGTT
237684 TTTTTTTTGT
1 TTTTTTTTGT
237694 GAAGATTAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 6 0.22
11 21 0.78
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:238052 original size:12 final size:12
Alignment explanation
Indices: 238020--238064 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
238010 CTTTTTTCTG
238020 TGTTGTTTTTTT
1 TGTTGTTTTTTT
**
238032 T-TT-AATTTTT
1 TGTTGTTTTTTT
238042 T-TTGTTTTTTT
1 TGTTGTTTTTTT
238053 TGTTGTTTTTTT
1 TGTTGTTTTTTT
238065 ATCACTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
10 8 0.30
11 8 0.30
12 11 0.41
ACGTcount: A:0.04, C:0.00, G:0.11, T:0.84
Consensus pattern (12 bp):
TGTTGTTTTTTT
Found at i:238074 original size:33 final size:35
Alignment explanation
Indices: 238011--238076 Score: 91
Period size: 33 Copynumber: 1.9 Consensus size: 35
238001 CCTTTGCATC
* *
238011 TTTTTTCTGTGTTGTTTTTTTTTTAATTTTTTTTG
1 TTTTTTCTGTGTTGTTTTTTTATCAATTTTTTTTG
*
238046 TTTTTT-T-TGTTGTTTTTTTATCACTTTTTTT
1 TTTTTTCTGTGTTGTTTTTTTATCAATTTTTTT
238077 AAGGGAACTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 21 0.75
34 1 0.04
35 6 0.21
ACGTcount: A:0.06, C:0.05, G:0.09, T:0.80
Consensus pattern (35 bp):
TTTTTTCTGTGTTGTTTTTTTATCAATTTTTTTTG
Found at i:245089 original size:52 final size:52
Alignment explanation
Indices: 244941--245069 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
244931 CGAAATATGA
*
244941 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
244993 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
245045 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
245070 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:245096 original size:13 final size:13
Alignment explanation
Indices: 245078--245102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
245068 CAAAGATCAG
245078 TGTATCGATACAA
1 TGTATCGATACAA
245091 TGTATCGATACA
1 TGTATCGATACA
245103 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:245182 original size:13 final size:13
Alignment explanation
Indices: 245164--245252 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
245154 ACAAAACTTA
245164 TGTATCGATACAT
1 TGTATCGATACAT
245177 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
245195 ATGTATCGATACAT
1 -TGTATCGATACAT
*
245209 TGTATCAATACAACACTT
1 TGTATCGAT---ACA--T
245227 ATGTATCGATACAT
1 -TGTATCGATACAT
245241 TGTATCGATACA
1 TGTATCGATACA
245253 ATACTTTATG
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
13 29 0.47
14 2 0.03
16 12 0.19
18 2 0.03
19 17 0.27
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:245188 original size:32 final size:32
Alignment explanation
Indices: 245143--245272 Score: 215
Period size: 32 Copynumber: 4.0 Consensus size: 32
245133 AGTAGCTTAT
*
245143 ATTGTATCAATACAAAACTTATGTATCGATAC
1 ATTGTATCAATACAACACTTATGTATCGATAC
*
245175 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCAATACAACACTTATGTATCGATAC
245207 ATTGTATCAATACAACACTTATGTATCGATAC
1 ATTGTATCAATACAACACTTATGTATCGATAC
* *
245239 ATTGTATCGATACAATACTTTATGTATCGATAC
1 ATTGTATCAATACAACAC-TTATGTATCGATAC
245272 A
1 A
245273 AATCGTTGAA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
32 77 0.84
33 15 0.16
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (32 bp):
ATTGTATCAATACAACACTTATGTATCGATAC
Found at i:248174 original size:13 final size:13
Alignment explanation
Indices: 248156--248182 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
248146 ACATTATGCT
248156 TTGTATCGATACA
1 TTGTATCGATACA
248169 TTGTATCGATACA
1 TTGTATCGATACA
248182 T
1 T
248183 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:248212 original size:20 final size:20
Alignment explanation
Indices: 248163--248241 Score: 106
Period size: 20 Copynumber: 4.0 Consensus size: 20
248153 GCTTTGTATC
248163 GATACATTGTATCGATACAT-
1 GATA-ATTGTATCGATACATG
* *
248183 GTTCATTGTATCGATACATG
1 GATAATTGTATCGATACATG
248203 GATAATTGTATCGATACATG
1 GATAATTGTATCGATACATG
* *
248223 GACAATTGTATCAATACAT
1 GATAATTGTATCGATACAT
248242 AAAACTGGTA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
19 15 0.29
20 37 0.71
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (20 bp):
GATAATTGTATCGATACATG
Found at i:248222 original size:39 final size:41
Alignment explanation
Indices: 248163--248241 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 41
248153 GCTTTGTATC
** *
248163 GATACATTGTATCGATACATGTTC-ATTGTATCGATACATG
1 GATACATTGTATCGATACATGGACAATTGTATCAATACATG
248203 GATA-ATTGTATCGATACATGGACAATTGTATCAATACAT
1 GATACATTGTATCGATACATGGACAATTGTATCAATACAT
248242 AAAACTGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 17 0.49
40 18 0.51
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (41 bp):
GATACATTGTATCGATACATGGACAATTGTATCAATACATG
Found at i:248308 original size:13 final size:13
Alignment explanation
Indices: 248287--248316 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
248277 CGATACATGG
*
248287 TACATTGTATCGA
1 TACAATGTATCGA
248300 TACAATGTATCGA
1 TACAATGTATCGA
248313 TACA
1 TACA
248317 TGATGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
TACAATGTATCGA
Found at i:248309 original size:33 final size:33
Alignment explanation
Indices: 248272--248336 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
248262 TACCACTGTT
*
248272 TGTATCGATACATGGT-ACATTGTATCGATACAA
1 TGTATCGATACATGATGA-ATTGTATCGATACAA
248305 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCGATACATGATGAATTGTATCGATACA
248337 TTACTTCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATGATGAATTGTATCGATACAA
Found at i:248659 original size:29 final size:29
Alignment explanation
Indices: 248624--248681 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
248614 GTTTTTTTTC
248624 GAAAGCTCCTTTGTATTTGTTTTGAGCTT
1 GAAAGCTCCTTTGTATTTGTTTTGAGCTT
248653 GAAAGCTCCTTTGTATTTGTTTTGAGCTT
1 GAAAGCTCCTTTGTATTTGTTTTGAGCTT
248682 ACCTTTCCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (29 bp):
GAAAGCTCCTTTGTATTTGTTTTGAGCTT
Found at i:251263 original size:13 final size:13
Alignment explanation
Indices: 251245--251269 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
251235 CAAGGAAATG
251245 TATCGATACATTA
1 TATCGATACATTA
251258 TATCGATACATT
1 TATCGATACATT
251270 GATCTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:254864 original size:13 final size:13
Alignment explanation
Indices: 254846--254871 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
254836 CAATTTTTTG
254846 TGTATCGATACAT
1 TGTATCGATACAT
254859 TGTATCGATACAT
1 TGTATCGATACAT
254872 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:254883 original size:32 final size:33
Alignment explanation
Indices: 254826--254889 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
254816 TGCAAACCAA
**
254826 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
254859 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
254890 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:254994 original size:20 final size:20
Alignment explanation
Indices: 254942--254996 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
254932 CATCTTTTTC
*
254942 ATGTATCGATACATTGCAAT
1 ATGTATCGATACTTTGCAAT
254962 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACTTTGCAA-T
*
254982 GTGTATCGATACTTT
1 ATGTATCGATACTTT
254997 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAT
Found at i:255590 original size:39 final size:39
Alignment explanation
Indices: 255515--255595 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 39
255505 TTTTCTTTCT
255515 CCCTTAATTAAAGTAATTTTAACAAATTCGTACATTCTCC
1 CCCTTAATTAAAGTAATTTTAACAAATTCG-ACATTCTCC
* *
255555 CCCTTAA-TAAGGTAATTTTAGCAAATTTACG-CATTCTCC
1 CCCTTAATTAAAGTAATTTTAACAAA-TT-CGACATTCTCC
255594 CC
1 CC
255596 TTTTAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
39 26 0.70
40 9 0.24
41 2 0.05
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (39 bp):
CCCTTAATTAAAGTAATTTTAACAAATTCGACATTCTCC
Found at i:256995 original size:21 final size:20
Alignment explanation
Indices: 256966--257008 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
256956 GGCTAGTGTG
* *
256966 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
256987 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
257007 GG
1 GG
257009 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:257458 original size:13 final size:13
Alignment explanation
Indices: 257440--257478 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
257430 ATAATCCCCC
*
257440 TGTATCGATACAG
1 TGTATCGATACAA
257453 TGTATCGATACAA
1 TGTATCGATACAA
*
257466 TGTATCAATACAA
1 TGTATCGATACAA
257479 AGAAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:263611 original size:13 final size:13
Alignment explanation
Indices: 263593--263618 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
263583 CAATTTTTTG
263593 TGTATCGATACAT
1 TGTATCGATACAT
263606 TGTATCGATACAT
1 TGTATCGATACAT
263619 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:263630 original size:32 final size:33
Alignment explanation
Indices: 263573--263636 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
263563 TGCAAGCCAA
**
263573 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
263606 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
263637 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:263805 original size:20 final size:20
Alignment explanation
Indices: 263780--263831 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
263770 GTCAACCTTA
263780 ATGTATCGATACAAATACCT
1 ATGTATCGATACAAATACCT
263800 ATGTATCGATACAAATACCT
1 ATGTATCGATACAAATACCT
263820 ATGTATCGATAC
1 ATGTATCGATAC
263832 TTTGATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAAATACCT
Found at i:265117 original size:34 final size:32
Alignment explanation
Indices: 265077--265144 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
265067 AGGTCAGATC
265077 AAATGTTTAACTATGTTT-AAAAATTATATGCCCA
1 AAATGTTTAA-T-T-TTTGAAAAATTATATGCCCA
*
265111 AAATGTTTAATTTTTGAATAATTATATGCCCA
1 AAATGTTTAATTTTTGAAAAATTATATGCCCA
265143 AA
1 AA
265145 TGAGTCATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 3 0.09
32 18 0.56
33 1 0.03
34 10 0.31
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (32 bp):
AAATGTTTAATTTTTGAAAAATTATATGCCCA
Done.