Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1546936
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 8 of 13
Found at i:1096702 original size:15 final size:15
Alignment explanation
Indices: 1096682--1096712 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1096672 TAAAAATGTC
*
1096682 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1096697 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1096712 C
1 C
1096713 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1098805 original size:20 final size:21
Alignment explanation
Indices: 1098726--1098804 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
1098716 AATGTCCAAA
*
1098726 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
1098746 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
1098771 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
1098791 TTGTATCGATACAT
1 ATGTATCGATACAT
1098805 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:1098809 original size:13 final size:13
Alignment explanation
Indices: 1098791--1098829 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1098781 ACATTTTTCT
1098791 TTGTATCGATACA
1 TTGTATCGATACA
1098804 TTGTATCGATACA
1 TTGTATCGATACA
*
1098817 CTGTATCGATACA
1 TTGTATCGATACA
1098830 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1101292 original size:20 final size:20
Alignment explanation
Indices: 1101269--1101341 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1101259 ACAATTCAAA
1101269 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1101289 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1101310 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1101330 GTATCGATACAT
1 GTATCGATACAT
1101342 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1101313 original size:21 final size:21
Alignment explanation
Indices: 1101287--1101362 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1101277 ACATGTTGCA
1101287 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1101308 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
1101328 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
1101349 ATGTATCGATACAT
1 ATGTATCGATACAT
1101363 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1101320 original size:41 final size:41
Alignment explanation
Indices: 1101269--1101362 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1101259 ACAATTCAAA
*
1101269 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1101310 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1101351 GTATCGATACAT
1 GTATCGATACAT
1101363 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:1101419 original size:13 final size:13
Alignment explanation
Indices: 1101401--1101426 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1101391 TACAGCAAGT
1101401 ATGTATCGATACA
1 ATGTATCGATACA
1101414 ATGTATCGATACA
1 ATGTATCGATACA
1101427 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1102348 original size:88 final size:89
Alignment explanation
Indices: 1102183--1103062 Score: 555
Period size: 88 Copynumber: 10.1 Consensus size: 89
1102173 ACTCCTATCC
* * * * **
1102183 ACGTATGGTTACCACCCTGGTCAAATCTACCTCTCTCTTA-TCTAACGTATGGTTACTACTTTGA
1 ACGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCTTAGTCTGACGTATGGTTACCACCCTG-
* * *
1102247 G-CAAATTCTTTTCATTTCGATTTG
65 GTCAGATTCTTTTCATTCCAATTTG
* * * *
1102271 ACGTATAGTTACCATCTTGGTCAAAACTGCCTCTCTCTTACT-TGACGTATGGTTACCA-CCTAG
1 ACGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCTTAGTCTGACGTATGGTTACCACCCT-G
* * *
1102334 GTCAGATTCATTTCATTCCTA-TTC
65 GTCAGATTCTTTTCATTCCAATTTG
* * * * *
1102358 ACGTATTGTTACCA-CTTGG-CCAAATTCACCTCTTTCCTA-TCTGACGTATGGTTACCACCCTG
1 ACGTATGGTTACCACCTTGGTCAAAACT-ACCTCTCTCTTAGTCTGACGTATGGTTACCACCCTG
*
1102420 GTCAGATTTTTTTCATTCCAATTTG
65 GTCAGATTCTTTTCATTCCAATTTG
** * * * * * * * * *
1102445 ACACATGGTTGCCACCTTGGT-TAAA-TATCTCTCTCTTTGTCTAATGTATGGCTACTACCCTAG
1 ACGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCTTAGTCTGACGTATGGTTACCACCCTGG
*
1102508 TCAGATTCTTTTCATTCTAATTTG
66 TCAGATTCTTTTCATTCCAATTTG
* * * * * * * * * *
1102532 ATGTATGGTTACTACCCTGGTTAAATCTACCTCTTTCTT-GTCTGATGTATGGTTGCTACCGTGG
1 ACGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCTTAGTCTGACGTATGGTTACCACCCTGG
* * * *
1102596 TCAAATTCATTTCATTTCGATTTG
66 TCAGATTCTTTTCATTCCAATTTG
* * * * * *
1102620 ACGTATGGTTACTATCTTGGTGAAATA-TATCTTTCTCTT-GTCTGATGTATGGTTACCACCCTG
1 ACGTATGGTTACCACCTTGGTCAAA-ACTACCTCTCTCTTAGTCTGACGTATGGTTACCACCCTG
* *
1102683 GTCAGATACTTTTCATTCCTATTTG
65 GTCAGATTCTTTTCATTCCAATTTG
* * * * * * *
1102708 ATGTATGGTTACTAGCC-TAGTC-AAATTCACCTC-CTTCTT-GTCTAACCTATGGTTAACACCC
1 ACGTATGGTTACCA-CCTTGGTCAAAACT-ACCTCTC-TCTTAGTCTGACGTATGGTTACCACCC
* * *
1102769 TGGTCAGATTCTTTTCATCCCGATGTG
63 TGGTCAGATTCTTTTCATTCCAATTTG
** * * * * *** * * *
1102796 ACACATGATTACCACCCTAGT-TAAA-TTTGTCTCTCTTCTGTCTAACGTATGGTTACCACGCTG
1 ACGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCTT-AGTCTGACGTATGGTTACCACCCTG
**
1102859 GTCAGATTCTTTTCATTCTGATTTG
65 GTCAGATTCTTTTCATTCCAATTTG
* * * * * **
1102884 ATC-TATGGTTACCACCCTGGTCAAATCTACCTCT-TTTCTA-TCTGACGTATGGTTTCTACCAA
1 A-CGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCT-TAGTCTGACGTATGGTTACCACCCT
* *
1102946 GGTTA-A----ATTCATT----TTTG
64 GGTCAGATTCTTTTCATTCCAATTTG
* * * * * * *
1102963 ACATATGGTTACTATCTTGGTGAAATCTACCTCTCTCTT-GTTTGACGTATGGTTACCACCCTAG
1 ACGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCTTAGTCTGACGTATGGTTACCACCCTGG
*
1103027 TCAGATTCTTTTCATTCCTATTTG
66 TCAGATTCTTTTCATTCCAATTTG
* *
1103051 ATGTATAGTTAC
1 ACGTATGGTTAC
1103063 TACCCTAGTT
Statistics
Matches: 616, Mismatches: 138, Indels: 76
0.74 0.17 0.09
Matches are distributed among these distances:
78 1 0.00
79 53 0.09
80 3 0.00
83 6 0.01
84 6 0.01
85 6 0.01
86 64 0.10
87 98 0.16
88 357 0.58
89 17 0.03
90 5 0.01
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (89 bp):
ACGTATGGTTACCACCTTGGTCAAAACTACCTCTCTCTTAGTCTGACGTATGGTTACCACCCTGG
TCAGATTCTTTTCATTCCAATTTG
Found at i:1102370 original size:43 final size:43
Alignment explanation
Indices: 1102315--1102438 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 43
1102305 CTCTTACTTG
1102315 ACGTATGGTTACCACCTAGGTCAGATTCATTTCATTCCTAT-TC
1 ACGTATGGTTACCACCT-GGTCAGATTCATTTCATTCCTATCTC
* * * * ** * *
1102358 ACGTATTGTTACCACTTGGCCAAATTCACCTCTTTCCTATCTG
1 ACGTATGGTTACCACCTGGTCAGATTCATTTCATTCCTATCTC
**
1102401 ACGTATGGTTACCACCCTGGTCAGATTTTTTTCATTCC
1 ACGTATGGTTACCA-CCTGGTCAGATTCATTTCATTCC
1102439 AATTTGACAC
Statistics
Matches: 62, Mismatches: 17, Indels: 3
0.76 0.21 0.04
Matches are distributed among these distances:
42 18 0.29
43 29 0.47
44 15 0.24
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (43 bp):
ACGTATGGTTACCACCTGGTCAGATTCATTTCATTCCTATCTC
Found at i:1102709 original size:176 final size:176
Alignment explanation
Indices: 1102185--1103068 Score: 815
Period size: 176 Copynumber: 5.1 Consensus size: 176
1102175 TCCTATCCAC
* * **
1102185 GTATGGTTACCACCCTGGTCAAATCTACCTCTCTCTTATCTAACGTATGGTTACTACTTTGAG-C
1 GTATGGTTACCACCCTGGTCAAATCTACCTCTTTCTTATCTGACGTATGGTTACTACCCTG-GTC
* * * ** *
1102249 AAATTCTTTTCATTTCGATTTGACGTATAGTTACCATCTTGGTCAAA-ACTGCCTCTCTCTT-AC
65 AAATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTGAAATA-TATCTCTCTCTTGTC
* * *
1102312 TTGACGTATGGTTACCA-CCTAGGTCAGATTCATTTCATTCCTA-TTCAC
129 -TGACGTATGGTTACCACCCT-GGTCAGATTCTTTTCATTCCTATTTGAT
* * * * *
1102360 GTATTGTTACCA-CTTGGCCAAAT-TCACCTCTTTCCTATCTGACGTATGGTTACCACCCTGGTC
1 GTATGGTTACCACCCTGGTCAAATCT-ACCTCTTTCTTATCTGACGTATGGTTACTACCCTGGTC
* * * * * * * * *
1102423 AGATTTTTTTCATTCCAATTTGACACATGGTTGCCACCTTGGTTAAATATCTCTCTCT-TTGTCT
65 AAATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTGAAATATATCTCTCTCTTGTCT
* * * * *
1102487 AATGTATGGCTACTACCCTAGTCAGATTCTTTTCATT-CTAATTTGAT
130 GACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCT-ATTTGAT
* * * * * *
1102534 GTATGGTTACTACCCTGGTTAAATCTACCTCTTTCTTGTCTGATGTATGGTTGCTACCGTGGTCA
1 GTATGGTTACCACCCTGGTCAAATCTACCTCTTTCTTATCTGACGTATGGTTACTACCCTGGTCA
* * * *
1102599 AATTCATTTCATTTCGATTTGACGTATGGTTACTATCTTGGTGAAATATATCTTTCTCTTGTCTG
66 AATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTGAAATATATCTCTCTCTTGTCTG
* *
1102664 ATGTATGGTTACCACCCTGGTCAGATACTTTTCATTCCTATTTGAT
131 ACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGAT
* * * * * * *
1102710 GTATGGTTACTAGCCTAGTCAAAT-TCACCTCCTTCTTGTCTAACCTATGGTTAAC-ACCCTGGT
1 GTATGGTTACCACCCTGGTCAAATCT-ACCTCTTTCTTATCTGACGTATGGTT-ACTACCCTGGT
* ** * * * * * * * * *
1102773 CAGATTCTTTTCATCCCGATGTGACACATGATTACCACCCTAGTTAAATTTGTCTCTCT-TCTGT
64 CAAATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTGAAATATATCTCTCTCT-TGT
* *
1102837 CTAACGTATGGTTACCACGCTGGTCAGATTCTTTTCATT-CTGATTTGAT
128 CTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCT-ATTTGAT
* * ** *
1102886 CTATGGTTACCACCCTGGTCAAATCTACCTCTTT-TCTATCTGACGTATGGTTTCTACCAAGGTT
1 GTATGGTTACCACCCTGGTCAAATCTACCTCTTTCT-TATCTGACGTATGGTTACTACCCTGGTC
* * * *
1102950 AAA-----TTCA-TT---TTTGACATATGGTTACTATCTTGGTGAAATCTACCTCTCTCTTGTTT
65 AAATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTGAAATATATCTCTCTCTTGTCT
*
1103006 GACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTTGAT
130 GACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGAT
* *
1103053 GTATAGTTACTACCCT
1 GTATGGTTACCACCCT
1103069 AGTTAGATTC
Statistics
Matches: 568, Mismatches: 121, Indels: 48
0.77 0.16 0.07
Matches are distributed among these distances:
167 87 0.15
168 3 0.01
171 4 0.01
172 2 0.00
173 33 0.06
174 100 0.18
175 103 0.18
176 232 0.41
177 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (176 bp):
GTATGGTTACCACCCTGGTCAAATCTACCTCTTTCTTATCTGACGTATGGTTACTACCCTGGTCA
AATTCTTTTCATTTCGATTTGACATATGGTTACCATCTTGGTGAAATATATCTCTCTCTTGTCTG
ACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGAT
Found at i:1102935 original size:44 final size:43
Alignment explanation
Indices: 1102183--1103428 Score: 160
Period size: 44 Copynumber: 28.6 Consensus size: 43
1102173 ACTCCTATCC
* *
1102183 ACGTATGGTTACCACCCTGGTCAAATCTACCTC-TCTCTTATCTA
1 ACGTATGGTTACCACCCTGGTCAAATCT-CCTCTTTTC-TATCTG
* ** ** * * *
1102227 ACGTATGGTTACTACTTTGAG-CAAATTCTTTTCATTTCGATTTG
1 ACGTATGGTTACCACCCTG-GTCAAA-TCTCCTCTTTTCTATCTG
* * * * *
1102271 ACGTATAGTTACCATCTTGGTCAAAACTGCCTC-TCTCT-TACTTG
1 ACGTATGGTTACCACCCTGGTCAAATCT-CCTCTTTTCTAT-C-TG
* * *
1102315 ACGTATGGTTACCA-CCTAGGTCAGAT-TCAT-TTCATTCCTAT-TC
1 ACGTATGGTTACCACCCT-GGTCAAATCTCCTCTT--TT-CTATCTG
* * * * *
1102358 ACGTATTGTTACCA-CTTGGCCAAATTCACCTCTTTCCTATCTG
1 ACGTATGGTTACCACCCTGGTCAAA-TCTCCTCTTTTCTATCTG
* * ** * * * *
1102401 ACGTATGGTTACCACCCTGGTCAGATTTTTTTCATTCCAATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTCCTCTTTTCTATCTG
** * * * * * * *
1102445 ACACATGGTTGCCACCTTGGTTAAATATCTCTCTCTT-TGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCTC-CTCTTTTCTATCTG
* * * * * * *
1102488 ATGTATGGCTACTACCCTAGTCAGAT-T-CTTTTCATTCTAATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTCCTCTT--TTCT-ATCTG
* * * *
1102532 ATGTATGGTTACTACCCTGGTTAAATCTACCTC-TTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCT-CCTCTTTTC-TATCTG
* * * * * * * *
1102576 ATGTATGGTTGCTACCGTGGTCAAAT-TCATTTCATTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTC--CTCTTTTCTATCTG
* * * * * * *
1102620 ACGTATGGTTACTATCTTGGTGAAATAT-ATCTTTCTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTCCTCTTT-TC-TATCTG
* * ** * * *
1102664 ATGTATGGTTACCACCCTGGTCAGATACTTTTCATTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCAAAT-CTCCTCTTTTCTATCTG
* * * * * * * *
1102708 ATGTATGGTTACTAGCCTAGTCAAATTCACCTC-CTTCTTGTCTA
1 ACGTATGGTTACCACCCTGGTCAAA-TCTCCTCTTTTC-TATCTG
* * * ** * ** * *
1102752 ACCTATGGTTAACACCCTGGTCAGATTCTTTTCATCCCGATGTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTCCTCTTTTCTATCTG
** * * * * * * * *
1102796 ACACATGATTACCACCCTAGTTAAATTTGTCTCTCTTCTGTCTA
1 ACGTATGGTTACCACCCTGGTCAAATCT-CCTCTTTTCTATCTG
* * * *
1102840 ACGTATGGTTACCACGCTGGTCAGAT-T-CTTTTCATTCTGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTCCTCTT--TTCT-ATCTG
1102884 ATC-TATGGTTACCACCCTGGTCAAATCTACCTCTTTTCTATCTG
1 A-CGTATGGTTACCACCCTGGTCAAATCT-CCTCTTTTCTATCTG
* * ** * *
1102928 ACGTATGGTTTCTACCAAGGTTAAA--T--TC-ATT-T-T-TG
1 ACGTATGGTTACCACCCTGGTCAAATCTCCTCTTTTCTATCTG
* * * * * *
1102963 ACATATGGTTACTATCTTGGTGAAATCTACCTCTCTCTTGT-T-TG
1 ACGTATGGTTACCACCCTGGTCAAATCT-CCTCT-T-TTCTATCTG
* * ** * * *
1103007 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTTG
1 ACGTATGGTTACCACCCTGGTCA-AATCTCCTCTTTTCTATCTG
* * * * * * * *
1103051 ATGTATAGTTACTACCCTAGTTAGAT-T-CTTTTCGTTCTAATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTCCTCTT--TTCT-ATCTG
* * * *
1103095 ACGTGTGGTTGCCA-CCTGGATCAAATCTTCCTC-TCTCTAGTCTA
1 ACGTATGGTTACCACCCTGG-TCAAATC-TCCTCTTTTCTA-TCTG
* * * *
1103139 ACCTATGGTTACCACCCTCGTCAAAT-TCAT-TTCATTCTGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATCTCCTCTT--TTCT-ATCTG
* * * * * *
1103183 ATGTATAGG-TACCGCCCTAGTCAAATCT-ATCTATCATCTATCTA
1 ACGTAT-GGTTACCACCCTGGTCAAATCTCCTCT-T-TTCTATCTG
* * ** * * *
1103227 ATGTATGGTTACCACCCTGG-CTAGAGTCTTTTCATTTCGATTTG
1 ACGTATGGTTACCACCCTGGTC-A-AATCTCCTCTTTTCTATCTG
** * * * *
1103271 ACAAATGGTTACCACCCTAGTCAAA-CTCTTCTCTTCCGTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAATCTCCTCT-TTTC-TATCTG
* * ** * * *
1103315 GCGTATGGTTACGACCCTGGTCAAATTCTTTTCATTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCAAA-TCTCCTCTTTTCTATCTG
* * * *
1103359 ATGTATGGTTACCACCCTTGTCAAATCTACCT-TTCTCTTATCTA
1 ACGTATGGTTACCACCCTGGTCAAATCT-CCTCTTTTC-TATCTG
* *
1103403 ACGTATGGTTACTACCTTGGTCAAAT
1 ACGTATGGTTACCACCCTGGTCAAAT
1103429 TCTTTTCATT
Statistics
Matches: 830, Mismatches: 283, Indels: 178
0.64 0.22 0.14
Matches are distributed among these distances:
35 21 0.03
36 1 0.00
37 2 0.00
38 2 0.00
39 2 0.00
40 5 0.01
41 5 0.01
42 34 0.04
43 103 0.12
44 576 0.69
45 55 0.07
46 16 0.02
47 8 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (43 bp):
ACGTATGGTTACCACCCTGGTCAAATCTCCTCTTTTCTATCTG
Found at i:1103234 original size:88 final size:87
Alignment explanation
Indices: 1103135--1103722 Score: 426
Period size: 88 Copynumber: 6.7 Consensus size: 87
1103125 CTCTCTCTAG
* * * *
1103135 TCTAACCTATGGTTACCACCCTCGTCAAATTCATTTCA-TTCTGATTTGATGTATAGG-TACCGC
1 TCTAACGTATGGTTACCACCCTGGTCAAATTCTTTTCATTTC-GATTTGATGTAT-GGTTACCAC
1103198 CCTAGTCAAATCTATCTATCATC-TA
64 CCTAGTCAAATCTATCT-TC-TCGTA
* * * ***
1103223 TCTAATGTATGGTTACCACCCTGG-CTAGAGTCTTTTCATTTCGATTTGACAAATGGTTACCACC
1 TCTAACGTATGGTTACCACCCTGGTC-AAATTCTTTTCATTTCGATTTGATGTATGGTTACCACC
* *
1103287 CTAGTCAAACTCTTCTCTTC-CGTG
65 CTAGTCAAA-TC-TATCTTCTCGTA
** *
1103311 TCTGGCGTATGGTTACGACCCTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCACCC
1 TCTAACGTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCACCC
* * *
1103376 TTGTCAAATCTACCTTTCTCTTA
66 TAGTCAAATCTATC-TTCTCGTA
* * * * * ** * * *
1103399 TCTAACGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTGGAATTAACATATGGTTATCATCT
1 TCTAACGTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCACCC
* *
1103464 TGGTCAAATCT-GCTTCTC-TCA
66 TAGTCAAATCTATCTTCTCGT-A
* * * * * * **
1103485 TGTCTAACGTATGGTTACCACCGTGGTC-AGTTACTTTTTATTCCTATTTCACATATGGTTACCA
1 --TCTAACGTATGGTTACCACCCTGGTCAAATT-CTTTTCATTTCGATTTGATGTATGGTTACCA
* * * *
1103549 CCTTACTCGAAT-TCA-CTTTCTTCCTA
63 CCCTAGTCAAATCT-ATC-TTC-TCGTA
* * * * ** *
1103575 TCTAACATATGGTTACCACCCTGGTCAGATT-TTTT-ATTCCGATTTGATGTATTGTTATGACAC
1 TCTAACGTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCACCC
* *
1103638 TAGTCAAATCTACCTCTCTCCTA
66 TAGTCAAATCTATCT-TCTCGTA
* * * * * * *
1103661 TATGACGTATGGTTACTACCTTGGTCAAATTCATTTCATTTTGATTTGAAGTATGGTTACCA
1 TCTAACGTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCA
1103723 TCTTCGTCAA
Statistics
Matches: 394, Mismatches: 82, Indels: 48
0.75 0.16 0.09
Matches are distributed among these distances:
85 1 0.00
86 66 0.17
87 25 0.06
88 281 0.71
89 13 0.03
90 7 0.02
91 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (87 bp):
TCTAACGTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATGTATGGTTACCACCC
TAGTCAAATCTATCTTCTCGTA
Found at i:1103236 original size:132 final size:132
Alignment explanation
Indices: 1102985--1103242 Score: 281
Period size: 132 Copynumber: 2.0 Consensus size: 132
1102975 TATCTTGGTG
* * * * * *
1102985 AAATCTACCTCTCTCTTGTTTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTT
1 AAATCTACCTCTCTCTAGTCTAACCTATGGTTACCACCCTAGTCAAATTCATTTCATTCCTATTT
* * * * * * * * *
1103050 GATGTATAGTTACTACCCTAGTTAGATTCTTTTCGTTCTAATTTGACGTGTGGTTGCCACCTGGA
66 GATGTATAGGTACCACCCTAGTCAGAATCTTTTCGATCTAATCTAACGTATGGTTACCACCTGGA
1103115 TC
131 TC
* *
1103117 AAATCTTCCTCTCTCTAGTCTAACCTATGGTTACCACCCTCGTCAAATTCATTTCATT-CTGATT
1 AAATCTACCTCTCTCTAGTCTAACCTATGGTTACCACCCTAGTCAAATTCATTTCATTCCT-ATT
* *
1103181 TGATGTATAGGTACCGCCCTAGTCA-AATCTATCTATC-ATCT-ATCTAATGTATGGTTACCACC
65 TGATGTATAGGTACCACCCTAGTCAGAATCT-T-T-TCGATCTAATCTAACGTATGGTTACCACC
1103243 CTGGCTAGAG
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
131 6 0.06
132 91 0.88
133 4 0.04
134 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (132 bp):
AAATCTACCTCTCTCTAGTCTAACCTATGGTTACCACCCTAGTCAAATTCATTTCATTCCTATTT
GATGTATAGGTACCACCCTAGTCAGAATCTTTTCGATCTAATCTAACGTATGGTTACCACCTGGA
TC
Found at i:1103435 original size:176 final size:175
Alignment explanation
Indices: 1103100--1104115 Score: 584
Period size: 176 Copynumber: 5.9 Consensus size: 175
1103090 ATTTGACGTG
* * * * *
1103100 TGGTTGCCA-CCTGGATCAAA-TCTTC-CTCTCTCTAGTCTAACCTATGGTTACCACCCTCGTCA
1 TGGTTACCACCCTGG-TCAAACTCTTCTCT-TC-CTTGTCTGACGTATGGTTACCACCCTGGTCA
* * * * *
1103162 AATTCATTTCA-TTCTGATTTGATGTATAGG-TACCGCCCTAGTCAAATCTATCTATCATCTATC
63 AATTCTTTTCATTTC-GATTTGATGTAT-GGTTACCACCTTAGTCAAATCTACCTTTC-TCTATC
* * * * *
1103225 TAATGTATGGTTACCACCCTGG-CTAGAGTCTTTTCATTTCGATTTGACAAA
125 TAACGTATGGTTACCACCCTGGTC-AAATTCTTTTCATTTCGATTTGATATA
* * * *
1103276 TGGTTACCACCCTAGTCAAACTCTTCTCTTCCGTGTCTGGCGTATGGTTACGACCCTGGTCAAAT
1 TGGTTACCACCCTGGTCAAACTCTTCTCTTCCTTGTCTGACGTATGGTTACCACCCTGGTCAAAT
1103341 TCTTTTCATTTCGATTTGATGTATGGTTACCACCCTT-GTCAAATCTACCTTTCTCTTATCTAAC
66 TCTTTTCATTTCGATTTGATGTATGGTTACCA-CCTTAGTCAAATCTACCTTTCTC-TATCTAAC
* * * * * *
1103405 GTATGGTTACTACCTTGGTCAAATTCTTTTCATTTGGAATTAACATA
129 GTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATATA
* * * * * *
1103452 TGGTTATCATCTTGGTCAAATCTGCTTCTC-T-CATGTCTAACGTATGGTTACCACCGTGGTC-A
1 TGGTTACCACCCTGGTCAAA-CT-CTTCTCTTCCTTGTCTGACGTATGGTTACCACCCTGGTCAA
* * * * * ** * *
1103514 GTTACTTTTTATTCCTATTTCACATATGGTTACCACCTTACTCGAAT-T-CACTTTCTTCCTATC
64 ATT-CTTTTCATTTCGATTTGATGTATGGTTACCACCTTAGTCAAATCTAC-CTTTC-T-CTATC
* * * *
1103577 TAACATATGGTTACCACCCTGGTCAGATT-TTTT-ATTCCGATTTGATGTA
125 TAACGTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATATA
* ** * * * * * * *
1103626 TTGTTATGACACTAGTCAAA-TCTACCTCTCTCC-TATATGACGTATGGTTACTACCTTGGTCAA
1 TGGTTACCACCCTGGTCAAACTCT-TCTCT-TCCTTGTCTGACGTATGGTTACCACCCTGGTCAA
* * * * * *
1103689 ATTCATTTCATTTTGATTTGAAGTATGGTTACCATCTTCGTCAAATCCACC--TC-CT-T-T---
64 ATTCTTTTCATTTCGATTTGATGTATGGTTACCACCTTAGTCAAATCTACCTTTCTCTATCTAAC
* * * * * **
1103746 -T-T-GTT--TA--GTGTGTTAGATTCTTTTCATTCCGATTTGATGCA
129 GTATGGTTACCACCCTG-GTCAAATTCTTTTCATTTCGATTTGATATA
* * *
1103787 TGGTTACCACCCTGGTCAAA-T-TTGC-CTCTCTCTTGTCT-AGCGTATAGTTACCACCCTAGTT
1 TGGTTACCACCCTGGTCAAACTCTT-CTCT-TC-CTTGTCTGA-CGTATGGTTACCACCCTGGTC
* * * ** * * * *
1103848 AGATTCTTTTCATTTTGATTCGACATATGCTTACCACCTTGGTCAAATTTGCCTTTCTCCTATC-
62 AAATTCTTTTCATTTCGATTTGATGTATGGTTACCACCTTAGTCAAATCTACCTTTCT-CTATCT
* *
1103912 AGACATATGGTTACCACCCTGAT-AAGATTCTTTTCAATTT-GATTTGATATA
126 A-ACGTATGGTTACCACCCTGGTCAA-ATTCTTTTC-ATTTCGATTTGATATA
* * * * ** * * *
1103963 TGGTTACCACCCTGGTCAAACTC-TCATATTTCTTGTCTGACGAATGCTTACGTCCATGGCCAGA
1 TGGTTACCACCCTGGTCAAACTCTTC-TCTTCCTTGTCTGACGTATGGTTACCACCCTGGTCAAA
* * * * * * * *
1104027 TTCTTTCCA-TTCTAATTTGTTGCATGGTTACCACCCTGGTCAAATCTACCCCTTTC-CTGTCTG
65 TTCTTTTCATTTC-GATTTGATGTATGGTTACCACCTTAGTCAAATCTA--CCTTTCTCTATCTA
*
1104090 ACGTATGGCTACCACCCTGGTCAAAT
127 ACGTATGGTTACCACCCTGGTCAAAT
1104116 CAACCTCTCT
Statistics
Matches: 642, Mismatches: 140, Indels: 116
0.71 0.16 0.13
Matches are distributed among these distances:
158 2 0.00
159 12 0.02
160 9 0.01
161 92 0.14
162 3 0.00
163 3 0.00
164 1 0.00
165 2 0.00
166 1 0.00
168 1 0.00
169 1 0.00
170 2 0.00
171 3 0.00
172 5 0.01
173 5 0.01
174 80 0.12
175 30 0.05
176 342 0.53
177 33 0.05
178 15 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (175 bp):
TGGTTACCACCCTGGTCAAACTCTTCTCTTCCTTGTCTGACGTATGGTTACCACCCTGGTCAAAT
TCTTTTCATTTCGATTTGATGTATGGTTACCACCTTAGTCAAATCTACCTTTCTCTATCTAACGT
ATGGTTACCACCCTGGTCAAATTCTTTTCATTTCGATTTGATATA
Found at i:1103454 original size:44 final size:43
Alignment explanation
Indices: 1103316--1103472 Score: 126
Period size: 44 Copynumber: 3.6 Consensus size: 43
1103306 CCGTGTCTGG
* * * *
1103316 CGTATGGTTACGACCCTGGTCAAATTCTTTTCATTTCGATTTGA
1 CGTATGGTTACTACCTTGGTCAAATTCTTTTCATTT-GAATTAA
* * *
1103360 TGTATGGTTACCACCCTT-GTCAAATCTACCTTTC-TCTT--ATCTAA
1 CGTATGGTTACTA-CCTTGGTCAAAT-T-CTTTTCAT-TTGAAT-TAA
1103404 CGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTGGAATTAA
1 CGTATGGTTACTACCTTGGTCAAATTCTTTTCATTT-GAATTAA
* *
1103448 CATATGGTTA-TCATCTTGGTCAAAT
1 CGTATGGTTACT-ACCTTGGTCAAAT
1103473 CTGCTTCTCT
Statistics
Matches: 91, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
42 7 0.08
43 8 0.09
44 62 0.68
45 7 0.08
46 7 0.08
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (43 bp):
CGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTGAATTAA
Found at i:1103512 original size:44 final size:42
Alignment explanation
Indices: 1103361--1103513 Score: 125
Period size: 44 Copynumber: 3.5 Consensus size: 42
1103351 TCGATTTGAT
* *
1103361 GTATGGTTACCACCCTT-GTCAAATCTACCTTTCTCTTATCTAAC
1 GTATGGTTACCA-CCTTGGTCAAATCT--CTTTCTCATGTCTAAC
*
1103405 GTATGGTTACTACCTTGGTCAAAT-TCTTT-TCATTTGGAAT-TAAC
1 GTATGGTTACCACCTTGGTCAAATCTCTTTCTCA--T-G--TCTAAC
* * *
1103449 ATATGGTTATCATCTTGGTCAAATCTGCTTCTCTCATGTCTAAC
1 GTATGGTTACCACCTTGGTCAAATCT-CTT-TCTCATGTCTAAC
*
1103493 GTATGGTTACCACCGTGGTCA
1 GTATGGTTACCACCTTGGTCA
1103514 GTTACTTTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
40 2 0.02
41 4 0.05
42 1 0.01
43 6 0.07
44 63 0.72
45 3 0.03
46 4 0.05
47 1 0.01
48 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (42 bp):
GTATGGTTACCACCTTGGTCAAATCTCTTTCTCATGTCTAAC
Found at i:1103542 original size:44 final size:44
Alignment explanation
Indices: 1103489--1103619 Score: 117
Period size: 44 Copynumber: 3.0 Consensus size: 44
1103479 CTCTCATGTC
* *
1103489 TAACGTATGGTTACCACCGTGGTCAGTTACTTTTTATTCCTATT
1 TAACATATGGTTACCACCCTGGTCAGTTACTTTTTATTCCTATT
* * ** * * *
1103533 TCACATATGGTTACCACCTTACTCGAATTCAC--TTTCTTCCTATC
1 TAACATATGGTTACCACCCTGGTC-AGTT-ACTTTTTATTCCTATT
* *
1103577 TAACATATGGTTACCACCCTGGTCAG--ATTTTTTATTCCGATT
1 TAACATATGGTTACCACCCTGGTCAGTTACTTTTTATTCCTATT
1103619 T
1 T
1103620 GATGTATTGT
Statistics
Matches: 66, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
40 1 0.02
42 10 0.15
43 1 0.02
44 49 0.74
45 3 0.05
46 2 0.03
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.41
Consensus pattern (44 bp):
TAACATATGGTTACCACCCTGGTCAGTTACTTTTTATTCCTATT
Found at i:1103925 original size:88 final size:87
Alignment explanation
Indices: 1103756--1103982 Score: 285
Period size: 88 Copynumber: 2.6 Consensus size: 87
1103746 TTGTTTAGTG
** ** *
1103756 TGTTAGATTCTTTTCATTCCGATTTGATGCATGGTTACCACCCTGGTCAAATTTGCCTCTCTCTT
1 TGTTAGATTCTTTTCATTTTGATTTGATATATGGTTACCACCCTGGTCAAATTTGCCTCTCTCCT
* *
1103821 GTCTAGCGTATAGTTACCACCC
66 ATCTAGCATATAGTTACCACCC
* * * * *
1103843 TAGTTAGATTCTTTTCATTTTGATTCGACATATGCTTACCACCTTGGTCAAATTTGCCTTTCTCC
1 T-GTTAGATTCTTTTCATTTTGATTTGATATATGGTTACCACCCTGGTCAAATTTGCCTCTCTCC
*
1103908 TATC-AGACATATGGTTACCACCC
65 TATCTAG-CATATAGTTACCACCC
* *
1103931 TGATAAGATTCTTTTCAATTTGATTTGATATATGGTTACCACCCTGGTCAAA
1 TG-TTAGATTCTTTTCATTTTGATTTGATATATGGTTACCACCCTGGTCAAA
1103983 CTCTCATATT
Statistics
Matches: 118, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
87 4 0.03
88 114 0.97
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (87 bp):
TGTTAGATTCTTTTCATTTTGATTTGATATATGGTTACCACCCTGGTCAAATTTGCCTCTCTCCT
ATCTAGCATATAGTTACCACCC
Found at i:1104129 original size:44 final size:44
Alignment explanation
Indices: 1104050--1104141 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
1104040 AATTTGTTGC
* * *
1104050 ATGGTTACCACCCTGGTCAAATCTACCCCTTTCCTGTCTGACGT
1 ATGGCTACCACCCTGGTCAAATCAACCCCTCTCCTGTCTGACGT
* * *
1104094 ATGGCTACCACCCTGGTCAAATCAACCTCTCTCCTGTGTGTCGT
1 ATGGCTACCACCCTGGTCAAATCAACCCCTCTCCTGTCTGACGT
1104138 ATGG
1 ATGG
1104142 TTACAACTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.30
Consensus pattern (44 bp):
ATGGCTACCACCCTGGTCAAATCAACCCCTCTCCTGTCTGACGT
Found at i:1104266 original size:89 final size:88
Alignment explanation
Indices: 1104094--1104284 Score: 203
Period size: 89 Copynumber: 2.2 Consensus size: 88
1104084 TGTCTGACGT
* *
1104094 ATGGCTACCACCCTGGTCAAATCAACCTCTCTCCTGTGTGTCGTATGGTTACAACTCAGGTTAGA
1 ATGGTTACCACCCTGGTCAAATCAACCTCTCTCCTGTGTGTCGTATGGTTACAACCCAGGTTAGA
**
1104159 TTCATTTCATTCCTATTTGATGC
66 TTCATTTCATTCCTATTTGACAC
* * * *
1104182 ATGGTTACGACCCTGGTCAAATTC-ACCTCCTTTTCTGTGTGAT-GTATGGTTACCACCCTA-GT
1 ATGGTTACCACCCTGGTCAAA-TCAACCT-CTCTCCTGTGTG-TCGTATGGTTACAACCC-AGGT
* *
1104244 CT-GATTCTTTTCATT-CTGATTTGGCAC
62 -TAGATTCATTTCATTCCT-ATTTGACAC
1104271 ATGGTTACCACCCT
1 ATGGTTACCACCCT
1104285 AATTAAATTT
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
88 25 0.29
89 58 0.67
90 3 0.03
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTCAAATCAACCTCTCTCCTGTGTGTCGTATGGTTACAACCCAGGTTAGA
TTCATTTCATTCCTATTTGACAC
Found at i:1105002 original size:44 final size:44
Alignment explanation
Indices: 1104561--1105363 Score: 143
Period size: 44 Copynumber: 18.3 Consensus size: 44
1104551 CTTGTCAAAC
* * * * * *
1104561 GTATGCTTACCTCCCTAGTTAAATTTTTTTCGTTATGATTTGA-
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCTGATTTGAT
* * ** * *
1104604 CTATGGTTACCACCCTAGTCAAA-TCTTCGTC-TCTCCAATCTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTT-TTCAT-TCTGATTTGAT
* * * * * * *
1104648 CTATGGTTACCACCTTGGTTAAATT-TATTTCATTGTAATTTGAC
1 GTATGGTTACCACCCTAGTCAAATTCT-TTTCATTCTGATTTGAT
* * * * *
1104692 GTATAGCTACCACCCTAGTCAAATTGAC-TGTC-TTC-CATCT-AGT
1 GTATGGTTACCACCCTAGTCAAATT--CTTTTCATTCTGATTTGA-T
* * * * * *
1104735 GTATGGTTACCATCCTGGTTAGATTCTTTTCATT-TCGAATTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCT-GATTTGAT
** * * * *
1104779 AAATGGGTACCACCCTGGCCAAA--CTTTTCTATTTTCTG-TCTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTC-A--TTCTGATTTGAT
* * * *
1104823 GGATGGTTACGACCATAGTCAAATTCTTTTTATAT-TGATTTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCAT-TCTGATTTGAT
* *** * * * *
1104867 G-ATGGTTACCACCCTGGTCAAA-TCTACCCCTCTCTTATCTGAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCAT-TCTGATTTGAT
* ** * * *** * ** * *
1104910 GTATGGTTACTACTATGGTTAAATTGGCTTC-TTTTTTTTCTAAC
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCTGATT-TGAT
*
1104954 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCTGATTTGAT
* * * * * * *
1104998 GTATGGTTACAACCCTAGTCTTATTTACCTTTC--TCTTG-TCTAAC
1 GTATGGTTACCACCCTAGTC-AAATT-CTTTTCATTC-TGATTTGAT
* * * * * * * *
1105042 GTATGGTTGCTACCTTGGTTAAACTCATTTCATT-TCGTTTTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCT-GATTTGAT
* * * * * * * * *
1105086 GTATGGTTACAATCTTTGTCAAATCTGCCTCTC-TCCT-ATCTGAC
1 GTATGGTTACCACCCTAGTCAAAT-T-CTTTTCATTCTGATTTGAT
* * * * *
1105130 GTATGGCTACCACCCTGGTCAGATTCTTTTTATTCTGATTCGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCTGATTTGAT
** * * * * **
1105174 GTATGGTTACCACTTTGGCCAAATCTGCCTTTC-TCCT-ATCAGAT
1 GTATGGTTACCACCCTAGTCAAAT-T-CTTTTCATTCTGATTTGAT
* * * * *
1105218 GTATGGTTGCCACCATAATCAGATTCTTTTCATT-TCGAATTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCT-GATTTGAT
* * *
1105262 ATATGGTTACCACCCTAGTCAAACTTTCTTATT--TCCTG-TCTGAT
1 GTATGGTTACCACCCTAGTCAAA--TTCTT-TTCATTCTGATTTGAT
* * ** * *
1105306 GAATGCTTACGTCCCTAGTCAGATT-TTTTCCATTCCGATTTGAT
1 GTATGGTTACCACCCTAGTCAAATTCTTTT-CATTCTGATTTGAT
*
1105350 GTAAGGTTACCACC
1 GTATGGTTACCACC
1105364 TTGGTTCAAT
Statistics
Matches: 521, Mismatches: 186, Indels: 105
0.64 0.23 0.13
Matches are distributed among these distances:
40 2 0.00
41 3 0.01
42 36 0.07
43 96 0.18
44 326 0.63
45 30 0.06
46 26 0.05
47 2 0.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.40
Consensus pattern (44 bp):
GTATGGTTACCACCCTAGTCAAATTCTTTTCATTCTGATTTGAT
Found at i:1105040 original size:88 final size:88
Alignment explanation
Indices: 1104948--1105447 Score: 330
Period size: 88 Copynumber: 5.7 Consensus size: 88
1104938 TTCTTTTTTT
1104948 TCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACAACCC
1 TCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACAACCC
** * * * *
1105013 TAGTCTTATTTACCTTTCTCTTG
66 TAGTCAAATCTGCCTTTCTCCTA
* * * * * * * * * *
1105036 TCTAACGTATGGTTGCTACCTTGGTTAAACTCATTTCATT-TCGTTTTGATGTATGGTTACAATC
1 TCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-GATTTGATGTATGGTTACAACC
* * *
1105100 TTTGTCAAATCTGCCTCTCTCCTA
65 CTAGTCAAATCTGCCTTTCTCCTA
* * * * * * **
1105124 TCTGACGTATGGCTACCACCCTGGTCAGATTCTTTTTATTCTGATTCGATGTATGGTTACCACTT
1 TCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACAACCC
* *
1105189 TGGCCAAATCTGCCTTTCTCCTA
66 TAGTCAAATCTGCCTTTCTCCTA
* * * * * * *
1105212 TC-AGATGTATGGTTGCCACCATAATCAGATTCTTTTCATT-TCGAATTGATATATGGTTACCAC
1 TCTA-ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-GATTTGATGTATGGTTACAAC
** * *
1105275 CCTAGTCAAA-CTTTCTTATTTCCTG
64 CCTAGTCAAATCTGCCTT-TCTCCTA
* * * * ** * * *
1105300 TCTGATGAATGCTTACGTCCCTAGTCAGATT-TTTTCCATTCCGATTTGATGTAAGGTTACCACC
1 TCTAACGTATGGTTACCACCCTAGTCAGATTCTTTT-CATTCTGATTTGATGTATGGTTACAACC
* * * *
1105364 TTGGTTC-AATCTGCCTCTCTCTTA
65 CTAG-TCAAATCTGCCTTTCTCCTA
* ** * * * * * *
1105388 TCTGACGTATGGTTATTACCTTGGTTAAATT-TATTTCATTTTGATTTGACGTATGGTTAC
1 TCTAACGTATGGTTACCACCCTAGTCAGATTCT-TTTCATTCTGATTTGATGTATGGTTAC
1105448 CAACTTGGTC
Statistics
Matches: 311, Mismatches: 90, Indels: 22
0.74 0.21 0.05
Matches are distributed among these distances:
87 11 0.04
88 290 0.93
89 10 0.03
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (88 bp):
TCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACAACCC
TAGTCAAATCTGCCTTTCTCCTA
Found at i:1105061 original size:132 final size:131
Alignment explanation
Indices: 1104825--1105064 Score: 313
Period size: 132 Copynumber: 1.8 Consensus size: 131
1104815 TGTCTGATGG
* * * *
1104825 ATGGTTACGACCATAGTCAAATTCTTTTTATATTGATTTGATGATGGTTACCACCCTGGTCAAAT
1 ATGGTTACCACCATAGTCAAATTCTTTTCATATTGATTTGATGATGGTTACAACCCTAGTCAAAT
*
1104890 CTACCCCTCTCTTATCTGACGTATGGTTACTACTATGGTTAAATTGGCTTCTTTTTTTTCTAACG
66 CTACCCCTCTCTTATCTAACGTATGGTTACTACTATGGTTAAATTGGCTTCTTTTTTTTCTAACG
1104955 T
131 T
* * **
1104956 ATGGTTACCACCCTAGTCAGATTCTTTTCAT-TCTGATTTGATGTATGGTTACAACCCTAGTCTT
1 ATGGTTACCACCATAGTCAAATTCTTTTCATAT-TGATTTGATG-ATGGTTACAACCCTAGTCAA
* ** * *
1105020 ATTTACCTTTCTCTTGTCTAACGTATGGTTGCTACCT-TGGTTAAA
64 ATCTACCCCTCTCTTATCTAACGTATGGTTACTA-CTATGGTTAAA
1105065 CTCATTTCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
130 1 0.01
131 37 0.40
132 52 0.57
133 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.42
Consensus pattern (131 bp):
ATGGTTACCACCATAGTCAAATTCTTTTCATATTGATTTGATGATGGTTACAACCCTAGTCAAAT
CTACCCCTCTCTTATCTAACGTATGGTTACTACTATGGTTAAATTGGCTTCTTTTTTTTCTAACG
T
Found at i:1105090 original size:132 final size:131
Alignment explanation
Indices: 1104817--1105095 Score: 294
Period size: 132 Copynumber: 2.1 Consensus size: 131
1104807 CTATTTTCTG
* * * *
1104817 TCTGATGGATGGTTACGACCATAGTCAAATTCTTTTTATATTGATTTGATGATGGTTACCACCCT
1 TCTGATGTATGGTTACCACCATAGTCAAATTCTTTTCATATTGATTTGATGATGGTTACAACCCT
* * * ** **
1104882 GGTCAAATCTACCCCTCTCTTATCTGACGTATGGTTACTACTATGGTTAAATTGGCTTCTTTTTT
66 AGTCAAATCTACCCCTCTCTTATCTAACGTATGGTTACTACTATGGTTAAACTCACTTCTTTCGT
1104947 T
131 T
* * * *
1104948 TCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCAT-TCTGATTTGATGTATGGTTACAACC
1 TCTGATGTATGGTTACCACCATAGTCAAATTCTTTTCATAT-TGATTTGATG-ATGGTTACAACC
** * ** * * *
1105012 CTAGTCTTATTTACCTTTCTCTTGTCTAACGTATGGTTGCTACCT-TGGTTAAACTCATTTCATT
64 CTAGTCAAATCTACCCCTCTCTTATCTAACGTATGGTTACTA-CTATGGTTAAACTCACTTC-TT
1105076 TCGTT
127 TCGTT
1105081 T-TGATGTATGGTTAC
1 TCTGATGTATGGTTAC
1105096 AATCTTTGTC
Statistics
Matches: 119, Mismatches: 25, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
130 1 0.01
131 42 0.35
132 68 0.57
133 8 0.07
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.43
Consensus pattern (131 bp):
TCTGATGTATGGTTACCACCATAGTCAAATTCTTTTCATATTGATTTGATGATGGTTACAACCCT
AGTCAAATCTACCCCTCTCTTATCTAACGTATGGTTACTACTATGGTTAAACTCACTTCTTTCGT
T
Found at i:1105482 original size:176 final size:176
Alignment explanation
Indices: 1104956--1105482 Score: 490
Period size: 176 Copynumber: 3.0 Consensus size: 176
1104946 TTTCTAACGT
* * * * **
1104956 ATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACAACCCTAGTCTTA
1 ATGGCTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACCACCTTGGTCAAA
* * * * * * *
1105021 TTTACCTTTCTCTTGTCTAACGTATGGTTGCTACCTTGGTTAAACTCATTTCATTTCGTTTTGAT
66 TCTGCCTTTCTCTTATCTGACGTATGGTTGCTACCTTGGTTAAATTTATTTCATTTCGATTTGAT
* * * * *
1105086 GTATGGTTA-CAATCTTTGTCAAATCTGCCTCTCTCCTATCTGACGT
131 GTATGGTTACCAA-CTTAGTCAAATCTACCTCTTTCCTATCTGATGA
* * * * *
1105132 ATGGCTACCACCCTGGTCAGATTCTTTTTATTCTGATTCGATGTATGGTTACCACTTTGGCCAAA
1 ATGGCTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACCACCTTGGTCAAA
* * * * * ** * * *
1105197 TCTGCCTTTCTCCTATCAGATGTATGGTTGCCACCATAATCAGATTCT-TTTCATTTCGAATTGA
66 TCTGCCTTTCTCTTATCTGACGTATGGTTGCTACCTTGGTTAAATT-TATTTCATTTCGATTTGA
* * * * * * *
1105261 TATATGGTTACCACCCTAGTCAAA-CTTTCTTATTTCCTGTCTGATGA
130 TGTATGGTTACCAACTTAGTCAAATC-TACCTCTTTCCTATCTGATGA
** * *
1105308 AT-GCTTACGTCCCTAGTCAGATT-TTTTCCATTCCGATTTGATGTAAGGTTACCACCTTGGTTC
1 ATGGC-TACCACCCTAGTCAGATTCTTTT-CATTCTGATTTGATGTATGGTTACCACCTTGG-TC
* ** *
1105371 -AATCTGCCTCTCTCTTATCTGACGTATGGTTATTACCTTGGTTAAATTTATTTCATTTTGATTT
63 AAATCTGCCTTTCTCTTATCTGACGTATGGTTGCTACCTTGGTTAAATTTATTTCATTTCGATTT
* * * *
1105435 GACGTATGGTTACCAACTTGGTCAAATCCACCTCTTTCCTTTCTGATG
128 GATGTATGGTTACCAACTTAGTCAAATCTACCTCTTTCCTATCTGATG
1105483 TGTTTGGTTC
Statistics
Matches: 271, Mismatches: 72, Indels: 16
0.75 0.20 0.04
Matches are distributed among these distances:
175 8 0.03
176 259 0.96
177 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.42
Consensus pattern (176 bp):
ATGGCTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGATGTATGGTTACCACCTTGGTCAAA
TCTGCCTTTCTCTTATCTGACGTATGGTTGCTACCTTGGTTAAATTTATTTCATTTCGATTTGAT
GTATGGTTACCAACTTAGTCAAATCTACCTCTTTCCTATCTGATGA
Found at i:1105911 original size:44 final size:45
Alignment explanation
Indices: 1105863--1106018 Score: 151
Period size: 44 Copynumber: 3.5 Consensus size: 45
1105853 CCTATCTAAC
*
1105863 GTATGGTTACCAGCCAAGTCAGATTCTTTACATTCCT-ATTTGAT
1 GTATGGTTACCACCCAAGTCAGATTCTTTACATTCCTGATTTGAT
* * * ** * *
1105907 GTATGGTTCCCACCCTAGTCAAATTC-ACATCCTTCCTGA-CTGAT
1 GTATGGTTACCACCCAAGTCAGATTCTTTA-CATTCCTGATTTGAT
* * * *
1105951 GTATGGTTTCCACCCAAGTCAGATTCTTTTCATT-CTGATTTAAC
1 GTATGGTTACCACCCAAGTCAGATTCTTTACATTCCTGATTTGAT
1105995 GTATGGTTACCACCCTAA-TCAGAT
1 GTATGGTTACCACCC-AAGTCAGAT
1106019 CTACTTTTCT
Statistics
Matches: 88, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
43 5 0.06
44 80 0.91
45 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (45 bp):
GTATGGTTACCACCCAAGTCAGATTCTTTACATTCCTGATTTGAT
Found at i:1106122 original size:81 final size:81
Alignment explanation
Indices: 1105986--1106139 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 81
1105976 CTTTTCATTC
* * * * * *
1105986 TGATTTAACGTATGGTTACCACCCTAATCAGATCTACTTTTCTCGTATCTAACATATGGTTACTA
1 TGATTTAACGTATAGTTACCACCCTAATCAAATCCACTTTACTCCTATCTAACATATGGTTACAA
1106051 CCCTGGTCAGTTATTT
66 CCCTGGTCAGTTATTT
* * * *
1106067 TGATTTGACGTATAGTTACCACCCTAGA-CAAATCCGCTTTACTCCTATTTGACATATGGTTACA
1 TGATTTAACGTATAGTTACCACCCTA-ATCAAATCCACTTTACTCCTATCTAACATATGGTTACA
1106131 ACCCTGGTC
65 ACCCTGGTC
1106140 GAATTCTTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (81 bp):
TGATTTAACGTATAGTTACCACCCTAATCAAATCCACTTTACTCCTATCTAACATATGGTTACAA
CCCTGGTCAGTTATTT
Found at i:1106228 original size:44 final size:42
Alignment explanation
Indices: 1106118--1106230 Score: 104
Period size: 44 Copynumber: 2.6 Consensus size: 42
1106108 CTCCTATTTG
* * *
1106118 ACATATGGTTACAACCCTGGTCGAATTCTTTTCATTTTGATTTA
1 ACATATGGTTACCACCCTGGTC-AA-ACTTTTCATTTTGATCTA
* * *
1106162 ACATATGGTAACCA-CTTCGGTCAAACTTTCCTCTTTCTTG-TCTA
1 ACATATGGTTACCACCCT-GGTCAAACTTT--TCATT-TTGATCTA
1106206 ACATATGGTTACCACCCTGGTCAAA
1 ACATATGGTTACCACCCTGGTCAAA
1106231 TAATTTTTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
42 4 0.07
43 4 0.07
44 43 0.77
45 5 0.09
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (42 bp):
ACATATGGTTACCACCCTGGTCAAACTTTTCATTTTGATCTA
Found at i:1106416 original size:44 final size:44
Alignment explanation
Indices: 1106303--1106697 Score: 156
Period size: 44 Copynumber: 9.0 Consensus size: 44
1106293 AGGTGTTAGA
*
1106303 TTCTTTTCATT-TCGATTTGATGCATGGTTACCACCCTGGTCAA-
1 TTCTTTTCATTCT-GATTTGATGTATGGTTACCACCCTGGTCAAG
* * * *** *
1106346 AT-TTGTCTATGTCTTATCAAACGTATGGTTACCACCCTGGTCAAG
1 TTCTTTTC-AT-TCTGATTTGATGTATGGTTACCACCCTGGTCAAG
* *
1106391 TTCTTTTCATTCTGATTTGATGTATGGTTACCACCTTGGTCAAA
1 TTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAG
* ** ** ** ***
1106435 TAT-TACTCTC-CCCT-ATCGGACCTATGGTTACCACCCCAATC-AG
1 T-TCT--TTTCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAG
* ** *
1106478 ATTCTTTTTATTCTGATTTGATGTACAGTCACCACCCTGGTCAA-
1 -TTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAG
* * * * *
1106522 ATCTGTCTCTC-TTCT-ATCTGATGCAAGGTTACCACCCTGGT-TAG
1 TTCT-T-T-TCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAG
*** * *
1106566 ATTCTTTTCATT-TCGATTTGACAAATGGTTACCACCTTGGTCAAA
1 -TTCTTTTCATTCT-GATTTGATGTATGGTTACCACCCTGGTCAAG
* ** * * *
1106611 CTCTCCTCCTTCTTG-TTTGACGTATGGTTACCACCCTTGTCAAAG
1 TTCTTTTCATTC-TGATTTGATGTATGGTTACCACCCTGGTC-AAG
* *
1106656 -TCGTTTCATT-TCGA-TTGAATGTATGGTTACCACCCTAGTCAA
1 TTCTTTTCATTCT-GATTTG-ATGTATGGTTACCACCCTGGTCAA
1106698 ATCTACCTCT
Statistics
Matches: 249, Mismatches: 75, Indels: 56
0.66 0.20 0.15
Matches are distributed among these distances:
42 10 0.04
43 20 0.08
44 190 0.76
45 20 0.08
46 9 0.04
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (44 bp):
TTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAG
Found at i:1106461 original size:88 final size:86
Alignment explanation
Indices: 1106300--1107481 Score: 420
Period size: 88 Copynumber: 13.6 Consensus size: 86
1106290 CTAAGGTGTT
* * * *
1106300 AGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGGTCAAATTTGTCTATGTCTTATCA
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAA-TT-TCTCTCTCCTATCA
* *
1106365 AACGTATGGTTACCACCCTGGTC
64 GACCTATGGTTACCACCCTGGTC
* *
1106388 A-AGTTCTTTTCA-TTCTGATTTGATGTATGGTTACCACCTTGGTCAAATATTACTCTCCCCTAT
1 AGA-TTCTTTTCATTTC-GATTTGATGTATGGTTACCACCCTGGTCAAAT-TT-CTCTCTCCTAT
* ***
1106451 CGGACCTATGGTTACCACCCCAATC
62 CAGACCTATGGTTACCACCCTGGTC
* ** * *
1106476 AGATTCTTTTTA-TTCTGATTTGATGTACAGTCACCACCCTGGTCAAATCTGTCTCTCTTCTATC
1 AGATTCTTTTCATTTC-GATTTGATGTATGGTTACCACCCTGGTCAAAT-T-TCTCTCTCCTATC
* * * *
1106540 TGATGC-AAGGTTACCACCCTGGTT
63 AGA-CCTATGGTTACCACCCTGGTC
*** * * * * *
1106564 AGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCTTGGTCAAA-CTCTCCTCCTTCTTGTT
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATTTCT-CT-C-TCCTATC
* * *
1106628 TGACGTATGGTTACCACCCTTGTC
63 AGACCTATGGTTACCACCCTGGTC
* * * * * *
1106652 AAAGTCGTTTCATTTCGA-TTGAATGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTC
1 AGATTCTTTTCATTTCGATTTG-ATGTATGGTTACCACCCTGGTCAAAT-T-TCTCTCTCCTATC
* * **
1106716 TA-ATGC-ATGGTTACTACGTTGGTC
63 -AGA-CCTATGGTTACCACCCTGGTC
* ** * * * * * * * **
1106740 AAATTCATTTTTTTTTGGAATTAATTTATGGTTACCATCTTGGTCAAATATGTCTCTCTCATGCC
1 AGATTC-TTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAAT-T-TCTCTCTCCTATC
* * *
1106805 TG-CCGTATGGTCACCACCCTGCTC
63 AGACC-TATGGTTACCACCCTGGTC
* * * * * *
1106829 AGATTC-TTTCATTCCTATTTGGTGTATGGTTACCACCCTGGTCAAATCTATCTCTTTCCTAACT
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAAT-T-TCTCTCTCCTATCA
* * *
1106893 GACGTATGGTTACTACCTTGGTC
64 GACCTATGGTTACCACCCTGGTC
* ** * * * ** * * * *
1106916 AAATTCAATTCATTTAGAATTAACATATGGTTACCA-TCTCGGTCAATTTTGCCTCTCTCTTGTC
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCT-GGTCAAATTT--CTCTCTCCTATC
** *
1106980 TA-ATGTCTGGTTACCACCCTGGTC
63 -AGACCTATGGTTACCACCCTGGTC
* ** * * * * * **
1107004 CGATTCTTTTCATCCCTATTTGACGTATGGTTACCACCCTCGTCAAATTCACTTCTTTCCTATTT
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATT-TC-TCTCTCCTATCA
* * * *
1107069 GACATATAGTTGCCACCCTAGTC
64 GACCTATGGTTACCACCCTGGTC
* * * * * * * * * *
1107092 AGATTTTTTTCATTCCGATTTCATGTAAGATTACCACCCTGGTAAAATCTACCTCTCTCTTGTCT
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAAT-T-TCTCTCTCCTATCA
* * * * *
1107157 GACGTACGGTTACTACCTTGGTT
64 GACCTATGGTTACCACCCTGGTC
* * * * * * * * * * *
1107180 AAATTCATTACATTTTGACTTGACGTATGGTTATCATCTTGGTCAAA-TCCAC-CTCCT-T----
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATTTCTCTCTCCTATCAGA
** * *
1107238 -CT-T-GTT-TGA-TCTGCT-
66 CCTATGGTTACCACCCTGGTC
* * * * * * *
1107253 AGATTCTTTTCA-TTCTGATTTGATGCAAGGTTCCCACCTTTGTCAAATTTATCCCTCCCCTATC
1 AGATTCTTTTCATTTC-GATTTGATGTATGGTTACCACCCTGGTCAAA-TT-TCTCTCTCCTATC
* * * * *
1107317 TGGCGTATGCTTACCACCCTGTTC
63 AGACCTATGGTTACCACCCTGGTC
* ** * * * * *
1107341 AAATTCTTTTCA-TTCTGATTTGACATATGGTTAGCACCATGGCCAAATTTGCCTTTCTCTTATC
1 AGATTCTTTTCATTTC-GATTTGATGTATGGTTACCACCCTGGTCAAATTT--CTCTCTCCTATC
* * * *
1107405 AAACGTATGGTGACCACCCTGATC
63 AGACCTATGGTTACCACCCTGGTC
* * * * * * *
1107429 AAATTATTTTCCTTTCAATTTGATATATGGTTACCACACTAGTCAAACTTTCT
1 AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAA-TTTCT
1107482 ATTTCCAGTC
Statistics
Matches: 786, Mismatches: 254, Indels: 109
0.68 0.22 0.09
Matches are distributed among these distances:
72 2 0.00
73 32 0.04
74 3 0.00
75 2 0.00
76 5 0.01
77 4 0.01
78 2 0.00
83 2 0.00
84 5 0.01
85 8 0.01
86 6 0.01
87 85 0.11
88 548 0.70
89 76 0.10
90 4 0.01
91 2 0.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (86 bp):
AGATTCTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATTTCTCTCTCCTATCAGA
CCTATGGTTACCACCCTGGTC
Found at i:1107035 original size:44 final size:44
Alignment explanation
Indices: 1106808--1107134 Score: 164
Period size: 44 Copynumber: 7.5 Consensus size: 44
1106798 TCATGCCTGC
* * *
1106808 CGTATGGTCACCACCCTGCTCAGATTC-TTTCATTCCTATTTGG
1 CGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGA
* * * * **
1106851 TGTATGGTTACCACCCTGGTCA-AATCTATCTCTTTCCTAACTGA
1 CGTATGGTTACCACCCTGGTCAGATTCT-TTTCATTCCTATTTGA
* * * ** *** * *
1106895 CGTATGGTTACTACCTTGGTCAAATTCAATTCATTTAGAATTAA
1 CGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGA
* * * * *
1106939 CATATGGTTACCA-TCTCGGTCA-A-T-TTTGCCTCTCTCT-TGTCTAA
1 CGTATGGTTACCACCCT-GGTCAGATTCTTTTCAT-TC-CTAT-T-TGA
* * * *
1106983 TGTCTGGTTACCACCCTGGTCCGATTCTTTTCATCCCTATTTGA
1 CGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGA
* * ** *
1107027 CGTATGGTTACCACCCTCGTCAAATTCACTTCTTTCCTATTTGA
1 CGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGA
* * * * * * *
1107071 CATATAGTTGCCACCCTAGTCAGATTTTTTTCATTCCGATTTCA
1 CGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGA
* * *
1107115 TGTAAGATTACCACCCTGGT
1 CGTATGGTTACCACCCTGGT
1107135 AAAATCTACC
Statistics
Matches: 201, Mismatches: 70, Indels: 25
0.68 0.24 0.08
Matches are distributed among these distances:
41 3 0.01
42 5 0.02
43 22 0.11
44 154 0.77
45 9 0.04
46 3 0.01
47 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (44 bp):
CGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGA
Found at i:1107624 original size:44 final size:44
Alignment explanation
Indices: 1107540--1108879 Score: 249
Period size: 44 Copynumber: 30.4 Consensus size: 44
1107530 CTAATTTGAT
* * * * *
1107540 GTATGGTTACCACCCTAGTCAATTCTA-CAGCTCACTTGTCTGAC
1 GTATGGTTACCACCCTGGTCAAATCTATC-TCTCTCCTGTCTGAC
* *
1107584 GTATGGTTACCACCCTTGTCAAATCTATCTCTCTCCTGTCTGAA
1 GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* * ** * * * * *
1107628 GTATGGTTGCTACTTTGATCAAATTCT-TTTCAT-TTC-GATTTAAC
1 GTATGGTTACCACCCTGGTCAAA-TCTATCTC-TCTCCTG-TCTGAC
* * ** *
1107672 GTATGGTTACCATCTTGGTCAAATCTGCCTCTCTCTTGTCTGAC
1 GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* * * * * * *
1107716 GTATGGTTACCACCCGGGTCAAATTCTTTTTAT-TCCTATTTGAT
1 GTATGGTTACCACCCTGGTCAAA-TCTATCTCTCTCCTGTCTGAC
* * * * *
1107760 GCATGGTTACCACCCTAGTCAAAT-TCACCT-TATTTCTGTCTGAC
1 GTATGGTTACCACCCTGGTCAAATCT-ATCTCT-CTCCTGTCTGAC
* * ** *
1107804 GTATGGTTACCACCCTGGTCTGATTCT-T-T-TCATTTTGATTTGAC
1 GTATGGTTACCACCCTGGTC-AAATCTATCTCTC-TCCTG-TCTGAC
** *
1107848 AAATGGTTACCACCCTGGTCAAACTCT-TCTCTTTCCTGTCTGAC
1 GTATGGTTACCACCCTGGTCAAA-TCTATCTCTCTCCTGTCTGAC
* * * * * * * * * *
1107892 GTAAGGTTACGACCCAGGTCAGATTCTTTTTGT-TTC-GATTTGAT
1 GTATGGTTACCACCCTGGTCA-AATCTATCTCTCTCCTG-TCTGAC
* * **
1107936 GTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCCAAC
1 GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* * * * ** *
1107980 GTATGGTTACTACCTTGGTCAAATTCT-T-T-TCATTCGGAATTATC
1 GTATGGTTACCACCCTGGTCAAA-TCTATCTCTC-TCCTGTCTGA-C
* *** * * *
1108024 GCATGGTTACCATGTTGGTCAAATCTACCTCTCTCATGTCTAAC
1 GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* * * * * * *
1108068 ATATGGTTACCACTC-GGTCAGATTCT-TTTCAT-TCCTATTTAAC
1 GTATGGTTACCACCCTGGTCA-AATCTATCTC-TCTCCTGTCTGAC
* * * * * *
1108111 ATATAGTTACCACCCTGGTCGAAT-TCA-CTTTCTTCTTATCTGAC
1 GTATGGTTACCACCCTGGTCAAATCT-ATCTCTC-TCCTGTCTGAC
* * * * * * * *
1108155 CTATGATTGCCACCCTCGTCAATTTCT-TTTCAT-TCC-GATTTGAT
1 GTATGGTTACCACCCTGGTCAA-ATCTATCTC-TCTCCTG-TCTGAC
* * * * * *
1108199 GTGTGGTAACCACCCTAGTCAAATCTACCTCTTTCCTGTCTAAC
1 GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* * * * *
1108243 GTATGGTTACTACCTTGGTCAAAT-TCAT-TTTATTCTGAT-TGCAC
1 GTATGGTTACCACCCTGGTCAAATCT-ATCTCTCTCCTG-TCTG-AC
* * * * **
1108287 ATATGGTTAACACCTTGGTCAAA-CT-TGCATTTCTCCAAT-TAGAC
1 GTATGGTTACCACCCTGGTCAAATCTAT-C-TCTCTCCTGTCT-GAC
* * ** * *
1108331 GTACGGTTACCACCCTGATCAAATTCT-T-T-TCATTTTGATTTGAT
1 GTATGGTTACCACCCTGGTCAAA-TCTATCTCTC-TCCTG-TCTGAC
* * * * * *
1108375 ATATGGTTACCATCCTGGTCAAACTCT-CCTATTTCCTATCTGAC
1 GTATGGTTACCACCCTGGTCAAA-TCTATCTCTCTCCTGTCTGAC
* * * * *
1108419 GAATGCTTA-CATCCCTAGGTCATATTCTTTC-CAT-TCC-GATTTG-C
1 GTATGGTTACCA-CCCT-GGTCA-AATCTATCTC-TCTCCTG-TCTGAC
* * * * * *
1108463 TGTGTGGTTACCACCTTGGTCAAATCTACCTTTCTCCTATTTGAC
1 -GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
** * * * * * *
1108508 GTATGGTTACCACTTTAGTCCAATCAACCTATCTCTTGTCTGAC
1 GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* * * * * *
1108552 GTATGGTTACCACTCGGGT-AAGATTCT-TTTCAT-TTCTATTTGAC
1 GTATGGTTACCACCCTGGTCAA-A-TCTATCTC-TCTCCTGTCTGAC
* * *
1108596 GTATGGTTACCACCCTGGTCAAAT-TCACCTCTTTCCTGTCTGAT
1 GTATGGTTACCACCCTGGTCAAATCT-ATCTCTCTCCTGTCTGAC
* * * *
1108640 GTATGGTTACCACCCTGGTCAGATTCT-T-T-TCATTCTAATTTGAC
1 GTATGGTTACCACCCTGGTCA-AATCTATCTCTC-TCCT-GTCTGAC
** * * * * * *
1108684 ACAATGGTTACCACCCTTGTCAAATCTACCGCTCCCCTATTTGAC
1 -GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* ** * * * * *
1108729 ATATGGTTACCACTTTAGTCAAATCAATCGCTTTCTTGTCTGAC
1 GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
* * ** * * * *
1108773 GTATGGTTACCACTCGGGTCAGTTTCT-TTTCAT-TTCTATTTGAC
1 GTATGGTTACCACCCTGGTCA-AATCTATCTC-TCTCCTGTCTGAC
* * * * * *
1108817 GTATGGTTACCACCTTGGTTAAAT-TTTGCTCTTTCTTGTCTGAT
1 GTATGGTTACCACCCTGGTCAAATCTAT-CTCTCTCCTGTCTGAC
*
1108861 GTATGGTTACCACCTTGGT
1 GTATGGTTACCACCCTGGT
1108880 TAGATTCTAT
Statistics
Matches: 911, Mismatches: 294, Indels: 182
0.66 0.21 0.13
Matches are distributed among these distances:
42 12 0.01
43 92 0.10
44 685 0.75
45 102 0.11
46 18 0.02
47 2 0.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (44 bp):
GTATGGTTACCACCCTGGTCAAATCTATCTCTCTCCTGTCTGAC
Found at i:1107681 original size:88 final size:88
Alignment explanation
Indices: 1107580--1109692 Score: 719
Period size: 88 Copynumber: 24.2 Consensus size: 88
1107570 CTCACTTGTC
* * * * *
1107580 TGACGTATGGTTACCACCCTTGTCAAATCTATCTCTCTCCTGTCTGAAGTATGGTTGCTACTTTG
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTTG
*
1107645 ATCAAATTCTTTTCATTTCGATT
66 GTCAAATTCTTTTCATTTCGATT
* * * * * * * **
1107668 TAACGTATGGTTACCATCTTGGTCAAATCTGCCTCTCTCTTGTCTGACGTATGGTTACCACCCGG
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTTG
* * *
1107733 GTCAAATTCTTTTTATTCCTATT
66 GTCAAATTCTTTTCATTTCGATT
* * * * * *
1107756 TGATGCATGGTTACCACCCTAGTCAAAT-TCACCT-TATTTCTGTCTGACGTATGGTTACCACCC
1 TGACGTATGGTTACCACCCTAGTCAAATCT-ACCTCT-CTCCTGTCTGAAGTATGGTTACCACCT
** *
1107819 TGGTCTGATTCTTTTCATTTTGATT
64 TGGTCAAATTCTTTTCATTTCGATT
** * * * * * * **
1107844 TGACAAATGGTTACCACCCTGGTCAAACTCT-TCTCTTTCCTGTCTGACGTAAGGTTACGACCCA
1 TGACGTATGGTTACCACCCTAGTCAAA-TCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTT
* **
1107908 GGTCAGATTCTTTTTGTTTCGATT
65 GGTCAAATTCTTTTCATTTCGATT
* * *
1107932 TGATGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTC-CAACGTATGGTTACTACCTT
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAA-GTATGGTTACCACCTT
*
1107996 GGTCAAATTCTTTTCA-TTCGGAAT
65 GGTCAAATTCTTTTCATTTC-GATT
* *** * * *
1108020 T-ATCGCATGGTTACCATGTTGGTCAAATCTACCTCTCTCATGTCT-AACATATGGTTACCA-CT
1 TGA-CGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAA-GTATGGTTACCACCT
* * * *
1108082 CGGTCAGATTCTTTTCATTCCTATT
64 TGGTCAAATTCTTTTCATTTCGATT
* * * * * * * * ** * * *
1108107 TAACATATAGTTACCACCCTGGTCGAAT-T-CACTTTCTTCTTATCTGACCTATGATTGCCACCC
1 TGACGTATGGTTACCACCCTAGTCAAATCTAC-CTCTC-TCCTGTCTGAAGTATGGTTACCACCT
* * *
1108170 TCGTCAATTTCTTTTCATTCCGATT
64 TGGTCAAATTCTTTTCATTTCGATT
* * * * *
1108195 TGATGTGTGGTAACCACCCTAGTCAAATCTACCTCTTTCCTGTCT-AACGTATGGTTACTACCTT
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAA-GTATGGTTACCACCTT
1108259 GGTCAAATTCATTTT-A-TTCTGA-T
65 GGTCAAATTC-TTTTCATTTC-GATT
* * * * * * * ** * *
1108282 TGCACATATGGTTAACACCTTGGTCAAA-CTTGCATTTCTCCAAT-TAGACGTACGGTTACCACC
1 TG-ACGTATGGTTACCACCCTAGTCAAATC-TACCTCTCTCCTGTCT-GAAGTATGGTTACCACC
* * *
1108345 CTGATCAAATTCTTTTCATTTTGATT
63 TTGGTCAAATTCTTTTCATTTCGATT
** * * * * * * * *
1108371 TGATATATGGTTACCATCCTGGTCAAACTCT-CCTATTTCCTATCTGACGAATGCTTA-CATCCC
1 TGACGTATGGTTACCACCCTAGTCAAA-TCTACCTCTCTCCTGTCTGAAGTATGGTTACCA--CC
* * * *
1108434 TAGGTCATATTCTTTCCATTCCGATT
63 TTGGTCAAATTCTTTTCATTTCGATT
* * * * * * * *
1108460 TG-CTGTGTGGTTACCACCTTGGTCAAATCTACCTTTCTCCTATTTGACGTATGGTTACCACTTT
1 TGAC-GTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTT
* * * * * *
1108524 AGTCCAATCAACCTATC-TCTT-G-TC
65 GGTCAAAT--TCTTTTCAT-TTCGATT
* ** * * * * * *
1108548 TGACGTATGGTTACCACTCGGGT-AAGAT-T-CTTTTCATTTCTATTTGACGTATGGTTACCACC
1 TGACGTATGGTTACCACCCTAGTCAA-ATCTACCTCTC--TCCTGTCTGAAGTATGGTTACCACC
* *** *
1108610 CTGGTCAAATTCACCTC-TTTCCTG-TC
63 TTGGTCAAATTCTTTTCATTT-C-GATT
* * * * * * * * **
1108636 TGATGTATGGTTACCACCCTGGTCAGAT-T-CTTTTCATTCTAATTTGACACAATGGTTACCACC
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTC-TCCT-GTCTGA-AGTATGGTTACCA-C
** * ** *
1108699 CTT-GTCAAA-TC-TACCGCTCCCCTATT
62 CTTGGTCAAATTCTTTTC-AT-TTCGATT
* ** * * * * * * *
1108725 TGACATATGGTTACCACTTTAGTCAAATCAATCGCTTTCTTGTCTGACGTATGGTTACCA-CTCG
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCT-T
** *
1108789 GGTCAGTTTCTTTTCATTTCTATT
65 GGTCAAATTCTTTTCATTTCGATT
* * * * ** * * *
1108813 TGACGTATGGTTACCACCTTGGTTAAATTTTGCTCTTTCTTGTCTGATGTATGGTTACCACCTTG
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTTG
* * *
1108878 GTTAGATTCTATTCATTTC-ATTT
66 GTCAAATTCTTTTCATTTCGA-TT
** * * * * * * *
1108901 TGATATATAGTGACCACCCTAGTCAAATCCACCTCCCTCCTATCT-AA-TGT-GTTA-GA---T-
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTTG
** *
1108958 -TC-TTTTCGTTTTGATTT-GA--
66 GTCAAATTC-TTTTCATTTCGATT
* * * ** * * * *
1108977 -GAC--ATGGTTACAACCTTGGTCAAAT-T-TGTCTCTCTTGT-TTAACGTATGGTTGCCACCCT
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAA-GTATGGTTACCACCTT
* *
1109036 AGTCAGATTCTTTTCA-TTCTGATT
65 GGTCAAATTCTTTTCATTTC-GATT
* * * * *** * * *
1109060 TGACGTATGGTTACCACCGTGGTCAAATCTTCCTCTCTCCTATCTGACCAATGCTTACCACCCTA
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTTG
* * * *
1109125 GTCAGATTCATTTCATTTTGATC
66 GTCAAATTCTTTTCATTTCGATT
* * * * *
1109148 TAACGTATGGCTACCACCCTAGTCAAATTTGTCCATCT-T-CTATCT-AATGTATGGTTACCACC
1 TGACGTATGGTTACCACCCTAGTCAAATCT-ACC-TCTCTCCTGTCTGAA-GTATGGTTACCACC
* *
1109210 TTGGTCAAATTC-TTTCTGTTTCGACT
63 TTGGTCAAATTCTTTTC-ATTTCGATT
* ** * ** * * * *
1109236 TAACAAATGGTTACCACCCTAGTTAAACTCT-TTTCTTTCCTATTTGACA-TATGGTTACGACCT
1 TGACGTATGGTTACCACCCTAGTCAAA-TCTACCTCTCTCCTGTCTGA-AGTATGGTTACCACCT
* * *
1109299 TGGTCATATTGTTTTTATTTCGATT
64 TGGTCAAATTCTTTTCATTTCGATT
* * * * * *
1109324 TGATG-ATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCT-AACATATGGTTACAACCTT
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAA-GTATGGTTACCACCTT
* * * *
1109387 GGTCCAATTCATGTTC-TTTGGAAT
65 GGTCAAATTC-TTTTCATTTCGATT
* * * * * * * ** * * * *
1109411 TAACATATGGCTACCATCTTGGTCAAATTTGGCTCTCTCATGTCT-AACATATGGTTTCCACCCT
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAA-GTATGGTTACCACCTT
* * * * *
1109475 GATTAGATTCTTTTCATTCCTATT
65 GGTCAAATTCTTTTCATTTCGATT
* * * * * * * * * * *
1109499 TGATGTATGGTTACCATCTTGGTCAAATTTGCCTCTTTCATGTCT-AACGTAAGGTTTCCATCTT
1 TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAA-GTATGGTTACCACCTT
* * * *
1109563 GGTTAGATTCTTTTCATTCCTATT
65 GGTCAAATTCTTTTCATTTCGATT
* ** * * * *
1109587 TGACATATGGTTACCATGCTAGTCAAAT-T-CGCT-TCCATCGTATTTGACA-TATGGTTGCCAC
1 TGACGTATGGTTACCACCCTAGTCAAATCTAC-CTCT-C-TCCTGTCTGA-AGTATGGTTACCAC
* * *
1109648 CCTGGTCAGATTTTTTTCATTTCGATT
62 CTTGGTCAAATTCTTTTCATTTCGATT
*
1109675 TGATGTATGGTTACCACC
1 TGACGTATGGTTACCACC
1109693 TTGGTAAGAT
Statistics
Matches: 1513, Mismatches: 405, Indels: 214
0.71 0.19 0.10
Matches are distributed among these distances:
70 1 0.00
71 9 0.01
73 19 0.01
74 3 0.00
75 3 0.00
78 4 0.00
79 11 0.01
80 7 0.00
81 6 0.00
84 4 0.00
85 8 0.01
86 47 0.03
87 158 0.10
88 1061 0.70
89 150 0.10
90 21 0.01
91 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (88 bp):
TGACGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTCTGAAGTATGGTTACCACCTTG
GTCAAATTCTTTTCATTTCGATT
Found at i:1108694 original size:221 final size:220
Alignment explanation
Indices: 1108353--1108929 Score: 689
Period size: 221 Copynumber: 2.6 Consensus size: 220
1108343 CCCTGATCAA
** * * * *
1108353 ATTCTTTTCATTT-TGATTTGATATATGGTTACCATCCTGGTCAAACTCTCCTATTTCCTATCTG
1 ATTCTTTTCATTTCT-ATTTGACGTATGGTTACCACCCTGGTCAAATTCTCCTCTTTCCTGTCTG
* * * * * * ****
1108417 ACGAATGCTTA-CATCCCTAGGTCATATTCTTTCCATTCCGATTTGCTGTGTGGTTACCA-CCTT
65 ATGTATGGTTACCA-CCCT-GGTCAGATTCTTTTCATTCCAATTTGCACAATGGTTACCACCCTT
** * * *
1108480 GGTCAAATCTACCTTTCTCCTATTTGACGTATGGTTACCACTTTAGTCCAATCAA-C-CTATCTC
128 -GTCAAATCTACCGCTCCCCTATTTGACATATGGTTACCACTTTAGTCAAATCAATCGCT-T-TC
1108543 TTGTCTGACGTATGGTTACCACTCGGGTAAG
190 TTGTCTGACGTATGGTTACCACTCGGGTAAG
*
1108574 ATTCTTTTCATTTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCACCTCTTTCCTGTCTGA
1 ATTCTTTTCATTTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCTCCTCTTTCCTGTCTGA
*
1108639 TGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTAATTTGACACAATGGTTACCACCCTTGT
66 TGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCAATTTG-CACAATGGTTACCACCCTTGT
1108704 CAAATCTACCGCTCCCCTATTTGACATATGGTTACCACTTTAGTCAAATCAATCGCTTTCTTGTC
130 CAAATCTACCGCTCCCCTATTTGACATATGGTTACCACTTTAGTCAAATCAATCGCTTTCTTGTC
*
1108769 TGACGTATGGTTACCACTCGGGTCAG
195 TGACGTATGGTTACCACTCGGGTAAG
* * * * * *
1108795 TTTCTTTTCATTTCTATTTGACGTATGGTTACCACCTTGGTTAAATTTTGCTCTTTCTTGTCTGA
1 ATTCTTTTCATTTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCTCCTCTTTCCTGTCTGA
* * * * * * * * *
1108860 TGTATGGTTACCACCTTGGTTAGATTCTATTCATTTCATTTTG-ATATATAGTGACCACCCTAGT
66 TGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCAATTTGCACA-ATGGTTACCACCCTTGT
1108924 CAAATC
130 CAAATC
1108930 CACCTCCCTC
Statistics
Matches: 308, Mismatches: 41, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
219 2 0.01
220 42 0.14
221 253 0.82
222 9 0.03
223 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (220 bp):
ATTCTTTTCATTTCTATTTGACGTATGGTTACCACCCTGGTCAAATTCTCCTCTTTCCTGTCTGA
TGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCAATTTGCACAATGGTTACCACCCTTGTC
AAATCTACCGCTCCCCTATTTGACATATGGTTACCACTTTAGTCAAATCAATCGCTTTCTTGTCT
GACGTATGGTTACCACTCGGGTAAG
Found at i:1108740 original size:89 final size:88
Alignment explanation
Indices: 1108546--1108741 Score: 234
Period size: 89 Copynumber: 2.2 Consensus size: 88
1108536 CTATCTCTTG
* **
1108546 TCTGACGTATGGTTACCACTCGGGTAAGATTCTTTTCATTTCTATTTGACGTATGGTTACCACCC
1 TCTGACGTATGGTTACCACCCGGGTAAGATTCTTTTCATTTCTATTTGACCAATGGTTACCACCC
* ** *
1108611 TGGTCAAATTCACCTCTTTCCTG
66 TGGTCAAATTCACCGCTCCCCTA
* * *
1108634 TCTGATGTATGGTTACCACCCTGGTCAGATTCTTTTCA-TTCTAATTTGACACAATGGTTACCAC
1 TCTGACGTATGGTTACCACCCGGGTAAGATTCTTTTCATTTCT-ATTTGAC-CAATGGTTACCAC
*
1108698 CCTTGTCAAA-TCTACCGCTCCCCTA
64 CCTGGTCAAATTC-ACCGCTCCCCTA
* *
1108723 TTTGACATATGGTTACCAC
1 TCTGACGTATGGTTACCAC
1108742 TTTAGTCAAA
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
87 4 0.04
88 43 0.47
89 44 0.48
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (88 bp):
TCTGACGTATGGTTACCACCCGGGTAAGATTCTTTTCATTTCTATTTGACCAATGGTTACCACCC
TGGTCAAATTCACCGCTCCCCTA
Found at i:1108741 original size:133 final size:132
Alignment explanation
Indices: 1108587--1108830 Score: 330
Period size: 133 Copynumber: 1.8 Consensus size: 132
1108577 CTTTTCATTT
* * * *
1108587 CTATTTGACGTATGGTTACCACCCTGGTCAAATTC-ACCTCTTTCCTGTCTGATGTATGGTTACC
1 CTATTTGACATATGGTTACCACCCTAGTCAAA-TCAACCGCTTTCCTGTCTGACGTATGGTTACC
*
1108651 ACCCTGGTCAGATTCTTTTCA-TTCTAATTTGACACAATGGTTACCACCCTTGTCAAATCTACCG
65 ACCCGGGTCAGATTCTTTTCATTTCT-ATTTGAC-CAATGGTTACCACCCTTGTCAAATCTACCG
1108715 CTCCC
128 CTCCC
** * *
1108720 CTATTTGACATATGGTTACCACTTTAGTCAAATCAATCGCTTTCTTGTCTGACGTATGGTTACCA
1 CTATTTGACATATGGTTACCACCCTAGTCAAATCAACCGCTTTCCTGTCTGACGTATGGTTACCA
* * **
1108785 CTCGGGTCAGTTTCTTTTCATTTCTATTTGACGTATGGTTACCACC
66 CCCGGGTCAGATTCTTTTCATTTCTATTTGACCAATGGTTACCACC
1108831 TTGGTTAAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
132 14 0.15
133 78 0.81
134 4 0.04
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (132 bp):
CTATTTGACATATGGTTACCACCCTAGTCAAATCAACCGCTTTCCTGTCTGACGTATGGTTACCA
CCCGGGTCAGATTCTTTTCATTTCTATTTGACCAATGGTTACCACCCTTGTCAAATCTACCGCTC
CC
Found at i:1109067 original size:44 final size:44
Alignment explanation
Indices: 1109018--1110007 Score: 184
Period size: 44 Copynumber: 22.5 Consensus size: 44
1109008 CTCTTGTTTA
* *
1109018 ACGTATGGTTGCCACCCTAGTCAGATTCTTTTCATTCTGATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATCTG
* * * *
1109062 ACGTATGGTTACCACCGTGGTCA-AATCTTCCTCTC-TCCT-ATCTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTT--T-TCATTCTGATCTG
** * * * *
1109106 ACCAATGCTTACCACCCTAGTCAGATTCATTTCATTTTGATCTA
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATCTG
* * * * *
1109150 ACGTATGGCTACCACCCTAGTCAAATT-TGTCCATCTTCT-ATCTA
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCA--TTCTGATCTG
* * * * ** *
1109194 ATGTATGGTTACCACCTTGGTCAAATTCTTTCTGTTTC-GA-CTTA
1 ACGTATGGTTACCACCCTAGTCAGATTCTTT-TCATTCTGATC-TG
** * * * * *
1109238 ACAAATGGTTACCACCCTAGTTAAACTCTTTTCTTTCCT-ATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATT-CTGATCTG
* * * * * * * *
1109282 ACATATGGTTACGACCTTGGTCATATTGTTTTTATT-TCGATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-GATCTG
* * * * * * * *
1109326 ATG-ATGGTTACCACCTTGGTCAAATCTACCTCTC-TCCT-ATCTA
1 ACGTATGGTTACCACCCTAGTCAGAT-T-CTTTTCATTCTGATCTG
* * * * * *
1109369 ACATATGGTTACAACCTTGGTCCA-ATTCATGTTC-TT-TGGAAT-TA
1 ACGTATGGTTACCACCCTAGT-CAGATTC-TTTTCATTCT-G-ATCTG
* * * * * * ** *
1109413 ACATATGGCTACCATCTTGGTCAAATT-TGGCTC-TCTCATG-TCTA
1 ACGTATGGTTACCACCCTAGTCAGATTCT-TTTCAT-TC-TGATCTG
* * * *
1109457 ACATATGGTTTCCACCCT-GATTAGATTCTTTTCATTCCT-ATTTG
1 ACGTATGGTTACCACCCTAG-TCAGATTCTTTTCATT-CTGATCTG
* * * * * ** * *
1109501 ATGTATGGTTACCATCTTGGTCAAATT-TGCCTCTTTCATG-TCTA
1 ACGTATGGTTACCACCCTAGTCAGATTCT-TTTCATTC-TGATCTG
* * * * * * *
1109545 ACGTAAGGTTTCCATCTTGGTTAGATTCTTTTCATTCCT-ATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATT-CTGATCTG
* ** * * * *
1109589 ACATATGGTTACCATGCTAGTCAAATTCGCTTCCA-TC-GTATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTC-TTTTCATTCTG-ATCTG
* * * * *
1109633 ACATATGGTTGCCACCCTGGTCAGATTTTTTTCATT-TCGATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-GATCTG
* * * * * *
1109677 ATGTATGGTTACCACCTTGGTAAGATTTTTTTCATTCTGATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATCTG
* * * * * * *
1109721 ACGCATGGTTGCCACCGTAGCCA-AATC-TTACACTCCCCT-ATCTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCA-T--TCTGATCTG
* ** * *
1109765 ACCTATGGTTACCACCCCGGTCAGATTCTTTTAATTCTGATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATCTG
* * *
1109809 ATGTATGGTCACCACCCTAGTCA-AATCTGTCTCTC-TTCT-ATCTG
1 ACGTATGGTTACCACCCTAGTCAGATTCT-T-T-TCATTCTGATCTG
* ** *
1109853 ATGTATGGTTACCACCCCGGTCAGATTCTTTTCATT-TCGATTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-GATCTG
** * * * * ** * *
1109897 ACAAATGGTTACCACCTTGGTCAAACTCTCCTCTTTCCTG-TTTG
1 ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATT-CTGATCTG
* *
1109941 ACATATGGTTACCACCCTCA-TTAGATTCTTTTCATT-TCGAT-TGG
1 ACGTATGGTTACCACCCT-AGTCAGATTCTTTTCATTCT-GATCT-G
* *
1109985 ATGTATGGTTACCGCCCTAGTCA
1 ACGTATGGTTACCACCCTAGTCA
1110008 AATCTGCCTC
Statistics
Matches: 685, Mismatches: 190, Indels: 142
0.67 0.19 0.14
Matches are distributed among these distances:
42 14 0.02
43 74 0.11
44 540 0.79
45 49 0.07
46 8 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (44 bp):
ACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATCTG
Found at i:1109729 original size:132 final size:131
Alignment explanation
Indices: 1109551--1109824 Score: 288
Period size: 132 Copynumber: 2.1 Consensus size: 131
1109541 TCTAACGTAA
* * * * * *
1109551 GGTTTCCATCTTGGTTAGATTCTTTTCATTCCTATTTGACATATGGTTACCA-TGCTAGTCAAAT
1 GGTTACCACCTTGGTAAGATTCTTTTCATTCCTATTTGACACATGGTTACCACCG-TAGCCAAA-
* * * * * * *
1109615 TCGCTTCCA-T-CGTATTTGACATATGGTTGCCACCCTGGTCAGATTTTTTTCATT-TCGATTTG
64 T--CTTACACTCCCTATCTGACATATGGTTACCACCCCGGTCAGATTCTTTTAATTCT-GATTTG
1109677 ATGTAT
126 ATGTAT
* * *
1109683 GGTTACCACCTTGGTAAGATTTTTTTCATT-CTGATTTGACGCATGGTTGCCACCGTAGCCAAAT
1 GGTTACCACCTTGGTAAGATTCTTTTCATTCCT-ATTTGACACATGGTTACCACCGTAGCCAAAT
*
1109747 CTTACACTCCCCTATCTGACCTATGGTTACCACCCCGGTCAGATTCTTTTAATTCTGATTTGATG
65 CTTACACT-CCCTATCTGACATATGGTTACCACCCCGGTCAGATTCTTTTAATTCTGATTTGATG
1109812 TAT
129 TAT
*
1109815 GGTCACCACC
1 GGTTACCACC
1109825 CTAGTCAAAT
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
129 5 0.04
130 1 0.01
131 3 0.03
132 107 0.91
133 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.39
Consensus pattern (131 bp):
GGTTACCACCTTGGTAAGATTCTTTTCATTCCTATTTGACACATGGTTACCACCGTAGCCAAATC
TTACACTCCCTATCTGACATATGGTTACCACCCCGGTCAGATTCTTTTAATTCTGATTTGATGTA
T
Found at i:1109861 original size:132 final size:132
Alignment explanation
Indices: 1109631--1109868 Score: 286
Period size: 132 Copynumber: 1.8 Consensus size: 132
1109621 CCATCGTATT
* * * * * * *
1109631 TGACATATGGTTGCCACCCTGGTCAGATTTTTTTCATTTCGATTTGATGTATGGTTACCACCTTG
1 TGACATATGGTTACCACCCCGGTCAGATTCTTTTAATTTCGATTTGATGTATGGTCACCACCCTA
* * * *
1109696 GTAAGATTTTTTTCATTCTGATTTGACGCATGGTTGCCACCGTAGCCAAATCTTACACTCCCCTA
66 GTAAGATTTCTCTCATTCTGATCTGACGCATGGTTACCACCGTAGCCAAATCTTACACTCCCCTA
1109761 TC
131 TC
*
1109763 TGACCTATGGTTACCACCCCGGTCAGATTCTTTTAA-TTCTGATTTGATGTATGGTCACCACCCT
1 TGACATATGGTTACCACCCCGGTCAGATTCTTTTAATTTC-GATTTGATGTATGGTCACCACCCT
* *
1109827 AGTCAA-ATCTGTCTCTC-TTCT-ATCTGATGTATGGTTACCACC
65 AGT-AAGAT-T-TCTCTCATTCTGATCTGACGCATGGTTACCACC
1109869 CCGGTCAGAT
Statistics
Matches: 88, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
131 3 0.03
132 74 0.84
133 7 0.08
134 4 0.05
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (132 bp):
TGACATATGGTTACCACCCCGGTCAGATTCTTTTAATTTCGATTTGATGTATGGTCACCACCCTA
GTAAGATTTCTCTCATTCTGATCTGACGCATGGTTACCACCGTAGCCAAATCTTACACTCCCCTA
TC
Found at i:1109950 original size:176 final size:175
Alignment explanation
Indices: 1109679--1110466 Score: 680
Period size: 176 Copynumber: 4.5 Consensus size: 175
1109669 TCGATTTGAT
* * ** * * * *
1109679 GTATGGTTACCACCTTGGTAAGATTTTTTTCA-TTCTGATTTGACGCATGGTTGCCACCGTAGCC
1 GTATGGTTACCACCTTGGTCAGATTCTTTTCATTTC-GATTTGACATATGGTTACCACCTTGGTC
** * * * * * *
1109743 AAATCTTACACTCCCCTATCTGACCTATGGTTACCACCCCGGTCAGATTCTTTTAATT-CTGATT
65 AAATCTGCCTCTCTCATGTCT-ACATATGGTTACCACCCCGGTCAGATTCTTTTCATTCCT-ATT
* * *
1109807 TGATGTATGGTCACCACCCTAGTCAAATCTGTCTCTCTTCTATCTGAT
128 GGATGTATGGTTACCACCCTAGTCAAATCTGTCTCTCTTCTATCTGAC
** *
1109855 GTATGGTTACCACCCCGGTCAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCTTGGTCA
1 GTATGGTTACCACCTTGGTCAGATTCTTTTCATTTCGATTTGACATATGGTTACCACCTTGGTCA
* * * * * * *
1109920 AACTCT-CCTCTTTCCTGTTTGACATATGGTTACCACCCTC-ATTAGATTCTTTTCATTTCGATT
66 AA-TCTGCCTCTCTCATGTCT-ACATATGGTTACCACCC-CGGTCAGATTCTTTTCATTCCTATT
* * *
1109983 GGATGTATGGTTACCGCCCTAGTCAAATCTGCCTCTC-TCTTGTCTGAC
128 GGATGTATGGTTACCACCCTAGTCAAATCTGTCTCTCTTC-TATCTGAC
* * * * * * * * * *
1110031 GCATGATTACTACCTTGGTCAAATTCATTTT-TTTTGGAATTAACGTATGGTTACCATCTTGGTC
1 GTATGGTTACCACCTTGGTCAGATTC-TTTTCATTTCGATTTGACATATGGTTACCACCTTGGTC
* * * * *
1110095 AAATCTGCCTCTCTCATGTCTACCGTATGGTTACCACCCTGCTTAGATTC-TTTCATTCCTATTT
65 AAATCTGCCTCTCTCATGTCTA-CATATGGTTACCACCCCGGTCAGATTCTTTTCATTCCTATTG
* * *
1110159 GATATATGGTTACCACCCTAGTCAAATCTATCTCTCTCCTATCTGAC
129 GATGTATGGTTACCACCCTAGTCAAATCTGTCTCTCTTCTATCTGAC
* * * * *
1110206 GTATGGTTACCATCTTGGTCAAATTCATTTT-ATTTGGAATTAACATATGGTTACCACCTTGG-C
1 GTATGGTTACCACCTTGGTCAGATTC-TTTTCATTTCGATTTGACATATGGTTACCACCTTGGTC
* * * **
1110269 GAAATTTGCCCCTCTCATGTCTA-ATGCCTGGTTACCACCCTAGTCAGATTCTTTTCATTCCTAT
65 -AAATCTGCCTCTCTCATGTCTACAT--ATGGTTACCACCCCGGTCAGATTCTTTTCATTCCTAT
* * ** * *
1110333 TGGACGTATGGTTAGCACCCTAGTCAAAT-TCACTTTCTTTCTGTCTGAC
127 TGGATGTATGGTTACCACCCTAGTCAAATCTGTCTCTC-TTCTATCTGAC
* * * * ** * * *
1110382 ATATGGTTGCCACCTTGGTCAGATTTTTTTCATTCCGATTTGATGTACGATTACCACCCTGGTCA
1 GTATGGTTACCACCTTGGTCAGATTCTTTTCATTTCGATTTGACATATGGTTACCACCTTGGTCA
* *
1110447 AATCTACCTCTCTCTTGTCT
66 AATCTGCCTCTCTCATGTCT
1110467 GACGTACAGT
Statistics
Matches: 499, Mismatches: 96, Indels: 34
0.79 0.15 0.05
Matches are distributed among these distances:
173 1 0.00
174 1 0.00
175 160 0.32
176 324 0.65
177 13 0.03
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (175 bp):
GTATGGTTACCACCTTGGTCAGATTCTTTTCATTTCGATTTGACATATGGTTACCACCTTGGTCA
AATCTGCCTCTCTCATGTCTACATATGGTTACCACCCCGGTCAGATTCTTTTCATTCCTATTGGA
TGTATGGTTACCACCCTAGTCAAATCTGTCTCTCTTCTATCTGAC
Found at i:1110227 original size:44 final size:43
Alignment explanation
Indices: 1108980--1110229 Score: 159
Period size: 44 Copynumber: 28.5 Consensus size: 43
1108970 GATTTGAGAC
* * * * * * *
1108980 ATGGTTACAACCTTGGTCAAAT-TTGTCTCTCTTGTTTAACGT
1 ATGGTTACCACCCTGGTCAAATCTTCTCTCTCCTATCTGACGT
* * * * *
1109022 ATGGTTGCCACCCTAGTCAGATTCTT-T-TCATTCTGATTTGACGT
1 ATGGTTACCACCCTGGTCA-AATCTTCTCTC-TCCT-ATCTGACGT
* **
1109066 ATGGTTACCACCGTGGTCAAATCTTCCTCTCTCCTATCTGACCA
1 ATGGTTACCACCCTGGTCAAATCTT-CTCTCTCCTATCTGACGT
* * * * *
1109110 ATGCTTACCACCCTAGTCAGATTCATT-TCAT-T-TTGATCTAACGT
1 ATGGTTACCACCCTGGTCA-AATC-TTCTC-TCTCCT-ATCTGACGT
* * * * * *
1109154 ATGGCTACCACCCTAGTCAAAT-TTGTCCATCTTCTATCTAATGT
1 ATGGTTACCACCCTGGTCAAATCTTCT-C-TCTCCTATCTGACGT
* * * * * **
1109198 ATGGTTACCACCTTGGTCAAATTCTT-TCTGTTTCGA-CTTAACAA
1 ATGGTTACCACCCTGGTCAAA-TCTTCTCT-CTCCTATC-TGACGT
* * * * * *
1109242 ATGGTTACCACCCTAGTTAAACTCTTTTCTTTCCTATTTGACAT
1 ATGGTTACCACCCTGGTCAAA-TCTTCTCTCTCCTATCTGACGT
* * * * * * * * * *
1109286 ATGGTTACGACCTTGGTCATAT-TGTTTTTATTTCGATTTGATG-
1 ATGGTTACCACCCTGGTCAAATCT-TCTCT-CTCCTATCTGACGT
* * * *
1109329 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTAACAT
1 ATGGTTACCACCCTGGTCAAATCT-TCTCTCTCCTATCTGACGT
* * * * *** * *
1109373 ATGGTTACAACCTTGGTCCAATTCATGT-TCTTTGGAAT-TAACAT
1 ATGGTTACCACCCTGGT-CAAATC-T-TCTCTCTCCTATCTGACGT
* * * * * * *
1109417 ATGGCTACCATCTTGGTCAAAT-TTGGCTCTCTCATGTCTAACAT
1 ATGGTTACCACCCTGGTCAAATCTT--CTCTCTCCTATCTGACGT
* * * * * * *
1109461 ATGGTTTCCACCCTGATTAGATTCTTTTCAT-TCCTATTTGATGT
1 ATGGTTACCACCCTGGTCA-AATCTTCTC-TCTCCTATCTGACGT
* * * * * *
1109505 ATGGTTACCATCTTGGTCAAAT-TTGCCTCTTTCATGTCTAACGT
1 ATGGTTACCACCCTGGTCAAATCTT--CTCTCTCCTATCTGACGT
* * * * * * * * *
1109549 AAGGTTTCCATCTTGGTTAGATTCTTTTCAT-TCCTATTTGACAT
1 ATGGTTACCACCCTGGTCA-AATCTTCTC-TCTCCTATCTGACGT
** * * * * *
1109593 ATGGTTACCATGCTAGTCAAATTCGCTTC-C-ATCGTATTTGACAT
1 ATGGTTACCACCCTGGTCAAA-T--CTTCTCTCTCCTATCTGACGT
* * * * * * * *
1109637 ATGGTTGCCACCCTGGTCAGAT-TTTTTTCATTTCGATTTGATGT
1 ATGGTTACCACCCTGGTCAAATCTTCTCTC--TCCTATCTGACGT
* * * * * *
1109681 ATGGTTACCACCTTGGT-AAGAT-TTTTTTCATTCTGATTTGACGC
1 ATGGTTACCACCCTGGTCAA-ATCTTCTCTC-TCCT-ATCTGACGT
* * * * * * *
1109725 ATGGTTGCCACCGTAGCCAAATCTTACACTCCCCTATCTGACCT
1 ATGGTTACCACCCTGGTCAAATCTT-CTCTCTCCTATCTGACGT
* * * * * *
1109769 ATGGTTACCACCCCGGTCAGATTCTT-T-TAATTCTGATTTGATGT
1 ATGGTTACCACCCTGGTCA-AATCTTCTCT-CTCCT-ATCTGACGT
* * * *
1109813 ATGGTCACCACCCTAGTCAAATCTGTCTCTCTTCTATCTGATGT
1 ATGGTTACCACCCTGGTCAAATCT-TCTCTCTCCTATCTGACGT
* * * * * * **
1109857 ATGGTTACCACCCCGGTCAGATTCTTTTCAT-TTCGATTTGACAA
1 ATGGTTACCACCCTGGTCA-AATCTTCTC-TCTCCTATCTGACGT
* * * * * *
1109901 ATGGTTACCACCTTGGTCAAACTCTCCTCTTTCCTGTTTGACAT
1 ATGGTTACCACCCTGGTCAAA-TCTTCTCTCTCCTATCTGACGT
** * * * * * *
1109945 ATGGTTACCACCCTCATTAGATTCTTTTCAT-TTCGAT-TGGATGT
1 ATGGTTACCACCCTGGTCA-AATCTTCTC-TCTCCTATCT-GACGT
* * * * * *
1109989 ATGGTTACCGCCCTAGTCAAATCTGCCTCTCTCTTGTCTGACGC
1 ATGGTTACCACCCTGGTCAAATCT-TCTCTCTCCTATCTGACGT
* * * * * * *** *
1110033 ATGATTACTACCTTGGTCAAATTCATTTTTTTTGGAAT-TAACGT
1 ATGGTTACCACCCTGGTCAAA-TC-TTCTCTCTCCTATCTGACGT
* * * * *
1110077 ATGGTTACCATCTTGGTCAAATCTGCCTCTCTCATGTCT-ACCGT
1 ATGGTTACCACCCTGGTCAAATCT-TCTCTCTCCTATCTGA-CGT
* * * * **
1110121 ATGGTTACCACCCTGCTTAGATTCTT-TCAT-TCCTATTTGATAT
1 ATGGTTACCACCCTGGTCA-AATCTTCTC-TCTCCTATCTGACGT
*
1110164 ATGGTTACCACCCTAGTCAAATCTATCTCTCTCCTATCTGACGT
1 ATGGTTACCACCCTGGTCAAATCT-TCTCTCTCCTATCTGACGT
* *
1110208 ATGGTTACCATCTTGGTCAAAT
1 ATGGTTACCACCCTGGTCAAAT
1110230 TCATTTTATT
Statistics
Matches: 854, Mismatches: 274, Indels: 158
0.66 0.21 0.12
Matches are distributed among these distances:
40 3 0.00
41 3 0.00
42 27 0.03
43 114 0.13
44 623 0.73
45 66 0.08
46 18 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (43 bp):
ATGGTTACCACCCTGGTCAAATCTTCTCTCTCCTATCTGACGT
Found at i:1110345 original size:44 final size:43
Alignment explanation
Indices: 1110297--1110446 Score: 122
Period size: 44 Copynumber: 3.4 Consensus size: 43
1110287 GTCTAATGCC
1110297 TGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTGGACGTA
1 TGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATT-GACGTA
* * * * * *
1110341 TGGTTAGCACCCTAGTCAAATTCACTTTC-TTTCTGTCTGACATA
1 TGGTTACCACCCTAGTCAGATTC-TTTTCATTCCTAT-TGACGTA
* * * * * *
1110385 TGGTTGCCACCTTGGTCAGATTTTTTTCATTCCGATTTGATGTA
1 TGGTTACCACCCTAGTCAGATTCTTTTCATTCCTA-TTGACGTA
* * *
1110429 CGATTACCACCCTGGTCA
1 TGGTTACCACCCTAGTCA
1110447 AATCTACCTC
Statistics
Matches: 80, Mismatches: 22, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
43 4 0.05
44 70 0.88
45 6 0.08
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.39
Consensus pattern (43 bp):
TGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTGACGTA
Found at i:1110362 original size:88 final size:88
Alignment explanation
Indices: 1109679--1110525 Score: 514
Period size: 88 Copynumber: 9.6 Consensus size: 88
1109669 TCGATTTGAT
* * * * * * *
1109679 GTATGGTTACCACCTTGGTAAGATTTTTTTCATT-CTGATTTGACGCATGGTTGCCACCGTAGCC
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCT-ATTTGACGTATGGTTACCACCCTAGTC
** * * * * *
1109743 AAATCTTACACTCCCCTATCTGAC
65 AAATCTGCCTCTCTCATGTCTAAC
* * * * *
1109767 CTATGGTTACCACCCCGGTCAGATTCTTTTAATT-CTGATTTGATGTATGGTCACCACCCTAGTC
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCT-ATTTGACGTATGGTTACCACCCTAGTC
* * * *
1109831 AAATCTGTCTCTCTTC-TATCTGAT
65 AAATCTGCCTCTC-TCATGTCTAAC
* * * ** * *
1109855 GTATGGTTACCACCCCGGTCAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCTTGGTCA
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTCA
* * * *
1109920 AACTCT-CCTCTTTCCTGTTTGAC
66 AA-TCTGCCTCTCTCATGTCTAAC
* ** * * * * * *
1109943 ATATGGTTACCACCCTCATTAGATTCTTTTCATTTCGATTGGATGTATGGTTACCGCCCTAGTCA
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTCA
* *
1110008 AATCTGCCTCTCTCTTGTCTGAC
66 AATCTGCCTCTCTCATGTCTAAC
* * * * * * *** * * * * *
1110031 GCATGATTACTACCTTGGTCAAATTCATTTT-TTTTGGAATTAACGTATGGTTACCATCTTGGTC
1 GTATGGTTACCACCCTGGTCAGATTC-TTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTC
*
1110095 AAATCTGCCTCTCTCATGTCTACC
65 AAATCTGCCTCTCTCATGTCTAAC
* * **
1110119 GTATGGTTACCACCCTGCTTAGATTC-TTTCATTCCTATTTGATATATGGTTACCACCCTAGTCA
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTCA
** * * *
1110183 AATCTATCTCTCTCCTATCTGAC
66 AATCTGCCTCTCTCATGTCTAAC
* * * *** * * * * *
1110206 GTATGGTTACCATCTTGGTCAAATTCATTTT-ATTTGGAATTAACATATGGTTACCA-CCTTGGC
1 GTATGGTTACCACCCTGGTCAGATTC-TTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTC
* * *
1110269 GAAATTTGCCCCTCTCATGTCTAAT
65 -AAATCTGCCTCTCTCATGTCTAAC
** * * *
1110294 GCCTGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTGGACGTATGGTTAGCACCCTAGTCA
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTCA
* *
1110359 AAT-T-CACTTTCTTTC-TGTCTGAC
66 AATCTGC-C--TCTCTCATGTCTAAC
* * * * * * * * *
1110382 ATATGGTTGCCACCTTGGTCAGATTTTTTTCATTCCGATTTGATGTACGATTACCACCCTGGTCA
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTCA
* * *
1110447 AATCTACCTCTCTCTTGTCTGAC
66 AATCTGCCTCTCTCATGTCTAAC
** * * * * *
1110470 GTACAGTTACTACCTTGGTCAAATTCATTTCATAT--TGACTTGACGTATGGTTACCA
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCAT-TCCT-ATTTGACGTATGGTTACCA
1110526 TCTTAAGCAA
Statistics
Matches: 578, Mismatches: 161, Indels: 40
0.74 0.21 0.05
Matches are distributed among these distances:
86 4 0.01
87 82 0.14
88 467 0.81
89 24 0.04
90 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.38
Consensus pattern (88 bp):
GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCTATTTGACGTATGGTTACCACCCTAGTCA
AATCTGCCTCTCTCATGTCTAAC
Found at i:1110727 original size:88 final size:87
Alignment explanation
Indices: 1110565--1110785 Score: 192
Period size: 88 Copynumber: 2.5 Consensus size: 87
1110555 GATGTGTTCT
* * *** * * ***
1110565 ATTCTTTTCATTCCGATTTGATGCATGGTTGCCACCCTAGTCAAATTTGCCCCTCTCCTATCTGG
1 ATTCTTTTCATTTCGATTCGACATATGGTTACCA-CCTGGTCAAATTTGCCCCTCTCCTATCAAA
* * * *
1110630 CGTATGGTTACTATCCTA-TTCAG
65 CGTACGGTTACCA-CCCAGATCAG
* ** *
1110653 ATTCTTTTCATTTTGATTCGACATATGGTTACCACCATGGTCAAATTTGCCTTTCTCTTATCAAA
1 ATTCTTTTCATTTCGATTCGACATATGGTTACCACC-TGGTCAAATTTGCCCCTCTCCTATCAAA
1110718 CGTACGGTTACCACCCAGATCAG
65 CGTACGGTTACCACCCAGATCAG
* * * **
1110741 ATTTTTTTCCTTTCGATTTGGTATATGGTTACCACGCTGGTCAAA
1 ATTCTTTTCATTTCGATTCGACATATGGTTACCAC-CTGGTCAAA
1110786 CTCTCCTATT
Statistics
Matches: 106, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
87 5 0.05
88 100 0.94
89 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (87 bp):
ATTCTTTTCATTTCGATTCGACATATGGTTACCACCTGGTCAAATTTGCCCCTCTCCTATCAAAC
GTACGGTTACCACCCAGATCAG
Found at i:1110962 original size:44 final size:44
Alignment explanation
Indices: 1110852--1110948 Score: 158
Period size: 44 Copynumber: 2.2 Consensus size: 44
1110842 CAATTTGATG
* *
1110852 TATGGTTACCACCCTAGTCAATTCTACCTCTCTCTTATCTCACA
1 TATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTCACA
* *
1110896 TATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATTTTACA
1 TATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTCACA
1110940 TATGGTTAC
1 TATGGTTAC
1110949 TACTTTGATC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.24, C:0.31, G:0.08, T:0.37
Consensus pattern (44 bp):
TATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTATCTCACA
Found at i:1111069 original size:44 final size:44
Alignment explanation
Indices: 1111021--1112685 Score: 184
Period size: 44 Copynumber: 37.6 Consensus size: 44
1111011 CTCTCTCTTG
1111021 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
* * * **** ** ***
1111065 TTTGACGTATGGTTTACTACCTTGGTCAAATTGACCTCCTTCGGG
1 TTTGACGTATGG-TTACCACCCTGGTCAGATTCTTTTTATTCCTA
* ** * *
1111110 TCTGACGTATAATTACCACCCTGGTCATATTCTTTTCT-TATCCGA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTT-TAT-TCCTA
** * * * * * *
1111155 TTTGACACATGGTTACCACCCTAGTTAAATT-TGCCTCTCTT-CTA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCT--TTTTATTCCTA
* * * * * *
1111199 GTCTAACGTATGGTTACCACCATCGTTAGATTTTTTTTCATT-CTGA
1 -TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTT-ATTCCT-A
* * * ** *
1111245 TTTTGATGTATGGTTACCGCCCTGGTCAAATCTACCGTTTCTT-CTA
1 -TTTGACGTATGGTTACCACCCTGGTCAGAT-T-CTTTTTATTCCTA
* * * * ** * * *
1111291 TCTGACGTATGGTTACTACCAAT-GTCAAATTCACTTCATTTCGA
1 TTTGACGTATGGTTACCACC-CTGGTCAGATTCTTTTTATTCCTA
* * * * * * *** * * *
1111335 TTTGACGTATGGTTACTATCTTCGTGA-AATCTGCCTCTCTCTTG
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTAT-TCCTA
* * * * * *
1111379 TCTAACGTATGGTTACCACACTAGTCAGATTCTTTTCATTCCAA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
** * ** *
1111423 TTTGACGTATACTTACCACCC-GATCAGATTCTTTTCGTT-TTGA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCT-A
* * * ** ** *
1111466 TTTGACATATGGTTGCCACCCTGGTTA-AAACTTCCT-CTCTCTAA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTC-CT-A
* * * *
1111510 TCTGACCTATGGTTACCACCCTTGTCAGATTCATTTTATT-CTGA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCT-A
* * * * * * *
1111554 TTTGATGTATAGCTATCACCCTGGTCAAATT-TGTCTA-TCATCTA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTC--CTA
* * * * * * *
1111598 TCTGATGTATGGTTACCACCCTAGTTAGATTCTTTTCATTTCGA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
** * * * * *
1111642 TTTGACAAATGGTTACCACCCTAGTCAAACTC-TTCTATTTCCTG
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA-TTCCTA
* * * * * * * *
1111686 TCTAATGTATGGTTACGACCCTGGTTAGATTAGATTCTTTTCATTTCGA
1 TTTGACGTATGGTTACCACCCT-G---G-TCAGATTCTTTTTATTCCTA
** * * * *
1111735 TTTGACAAATGGTTACCACCCTGGTCAAACTCTTCTCT-TTCCTG
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTT-TTTATTCCTA
* * * * * * * * *
1111779 TCTAACGTATGGCTACGACTCTAGTCAGATTGTTTTCATTCCAA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
* * ** * * * * *
1111823 TTTGATGTATGGCTACCACTTTGGTCA-AATCTACCTCTCTT-CTG
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCT--TTTTATTCCTA
* * * * * * ***
1111867 TGTAACGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTGGA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
* * * * * *** * * *
1111911 ATT-ATCGTATGGTTATCATCTTGGTCA-AATCTGCCTCTCTCATG
1 TTTGA-CGTATGGTTACCACCCTGGTCAGATTCTTTTTAT-TCCTA
* * * * *
1111955 TTTGACATATGGTTACCACCTTAGTCAGATTCTTTTCATTCCTG
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
* * * * *
1111999 TTTGACGCATGGTTATCACCCTAGTC-GAATTCATTTTCTT-CTA
1 TTTGACGTATGGTTACCACCCTGGTCAG-ATTCTTTTTATTCCTA
* * * * ** * * * *
1112042 GTCTAACCTACGGTCGCCACCCTCGCCAGATTTTTTTTATTCCGA
1 -TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
* * * * *** * *
1112087 TTTGATGTATGGTTACAACCTTGGTCA-AATCTACCTGTCTCCTG
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTAT-TCCTA
* * * * * * * *
1112131 TCTAACGTACGGTTACTACCTTGGTCAAATTCATTTCATT-CTAA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCT-A
* * * * * *
1112175 TTGGACATATGGTTACCACCTTGGTCAAATT-TACATTT-CTCCTA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCT--TTTTATTCCTA
* * * * * *
1112219 -CTAACGTATGGTTACCACCCTGATCAGATTCTTTTCATTTCGA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
** * * *
1112262 TTTGATATATGGTTACCACCCTGGTTA-A-ACTTTCCTATTTCCT-
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTT-TTA-TTCCTA
* * * ** * ** *
1112305 TTCTGATGAATGCTTACGTCCTTGGTCAGATTCTTTCCATTCCGA
1 TT-TGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
** * * * * *** *
1112350 TTTGTTGTGTGGTTGCCACCCTGTTCA-AATCTACCTCTCTCCTA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTAT-TCCTA
* * * ** **** * *
1112394 TCTGACGTATGGTTACAACCTTGGTCA-AACCAACCTCTCCCT-
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
* * * * * *
1112436 TGTCTGACGTATGGTTACCACTCGGGTTAGCTTCTTTTCATTTCTA
1 T-T-TGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
* * * ** * *
1112482 TTTGACATATGGTTTCCACCCTGGTCAAATTCACCTCT-TTCCTG
1 TTTGACGTATGGTTACCACCCTGGTCAGATTC-TTTTTATTCCTA
* * * * *
1112526 TCTGATGTATGGTTACCACCATGCTCAGATTCTTTTCATT-CTGA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCT-A
** ** * * *
1112570 TTTGACACATGGTTACCACAATGGTTAAATT-TGTCTTTCTT-CTA
1 TTTGACGTATGGTTACCACCCTGGTCAGATTCT-T-TTTATTCCTA
* * * * * *
1112614 TCTAACGTACGGTTACCACCCTAGGACAGATTCTTTTCATT-TTGA
1 TTTGACGTATGGTTACCACCCT-GGTCAGATTCTTTTTATTCCT-A
* *
1112659 TTTAACATATGGTTACCACCCTGGTCA
1 TTTGACGTATGGTTACCACCCTGGTCA
1112686 AACTCTTCTC
Statistics
Matches: 1081, Mismatches: 463, Indels: 154
0.64 0.27 0.09
Matches are distributed among these distances:
42 9 0.01
43 119 0.11
44 688 0.64
45 192 0.18
46 36 0.03
47 5 0.00
48 5 0.00
49 24 0.02
50 3 0.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (44 bp):
TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTA
Found at i:1111185 original size:89 final size:89
Alignment explanation
Indices: 1111023--1111247 Score: 204
Period size: 90 Copynumber: 2.5 Consensus size: 89
1111013 CTCTCTTGTT
** * ** * *
1111023 TGACGTATGGTTACCACCCTGGTCAGATTCTTTTTATTCCTATTTGACGTATGGTTTACTACCTT
1 TGACGTATAATTACCACCCTGGTCAGATTCTTTTTATTCCGATTTGACACATGGTTTACCACCCT
*
1111088 GGTCAAATTGACCTCCTTCGGGTC
66 AGTCAAATTGACCTCCTTCGGGTC
*
1111112 TGACGTATAATTACCACCCTGGTCATATTCTTTTCT-TATCCGATTTGACACATGG-TTACCACC
1 TGACGTATAATTACCACCCTGGTCAGATTCTTTT-TAT-TCCGATTTGACACATGGTTTACCACC
* **
1111175 CTAGTTAAATTTG-CCTCTCTTCTAGTC
64 CTAGTCAAA-TTGACCTC-CTTCGGGTC
* ** * * * * *
1111202 TAACGTATGGTTACCACCATCGTTAGATTTTTTTTCATTCTGATTT
1 TGACGTATAATTACCACCCTGGTCAGATTCTTTTT-ATTCCGATTT
1111248 TGATGTATGG
Statistics
Matches: 109, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
89 50 0.46
90 58 0.53
91 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (89 bp):
TGACGTATAATTACCACCCTGGTCAGATTCTTTTTATTCCGATTTGACACATGGTTTACCACCCT
AGTCAAATTGACCTCCTTCGGGTC
Found at i:1111751 original size:93 final size:93
Alignment explanation
Indices: 1111622--1111797 Score: 316
Period size: 93 Copynumber: 1.9 Consensus size: 93
1111612 ACCACCCTAG
1111622 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCTTCTATTTCCTGT
1 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCTTCTATTTCCTGT
* *
1111687 CTAATGTATGGTTACGACCCTGGTTAGA
66 CTAACGTATGGCTACGACCCTGGTTAGA
* *
1111715 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAACTCTTCTCTTTCCTGT
1 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCTTCTATTTCCTGT
1111780 CTAACGTATGGCTACGAC
66 CTAACGTATGGCTACGAC
1111798 TCTAGTCAGA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 79 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (93 bp):
TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCTTCTATTTCCTGT
CTAACGTATGGCTACGACCCTGGTTAGA
Found at i:1111756 original size:49 final size:49
Alignment explanation
Indices: 1111622--1111763 Score: 134
Period size: 49 Copynumber: 3.0 Consensus size: 49
1111612 ACCACCCTAG
*
1111622 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAA
1 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAA
* * * * * * * * * *
1111671 CT--CTTCTATTTCCTGTCTA-ATG---TATGGTTACGACCCTGGTTAGA
1 TTAGATTCT-TTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAA
1111715 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAA
1 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAA
1111764 CTCTTCTCTT
Statistics
Matches: 65, Mismatches: 21, Indels: 14
0.65 0.21 0.14
Matches are distributed among these distances:
44 18 0.28
45 8 0.12
46 6 0.09
47 6 0.09
48 8 0.12
49 19 0.29
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (49 bp):
TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAA
Found at i:1112416 original size:88 final size:87
Alignment explanation
Indices: 1111446--1112420 Score: 437
Period size: 88 Copynumber: 11.0 Consensus size: 87
1111436 TACCACCCGA
* ** * * * * * *
1111446 TCAGATTCTTTTCGTTTTGATTTGACATATGGTTGCCACCCTGGTTAAAACTTCCTCTCT-CTAA
1 TCAGATTC-TTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTATCTCCT-A
* * *
1111510 TCTGACCTATGGTTACCACCCTT-G
64 TCTAACGTATGGTTA-CAACCTTGG
* * * * * * * **
1111534 TCAGATTCATTTTATTCTGATTTGATGTATAGCTATCACCCTGGTCAAATTTGTCTATCAT-CTA
1 TCAGATTC-TTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTATC-TCCTA
* * * * *
1111598 TCTGATGTATGGTTACCACCCTAG
64 TCTAACGTATGGTTACAACCTTGG
* * * * * * * *
1111622 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCT-TCTATTTCCTG
1 TCAGATTC-TTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAA-TCTACCTATCTCCTA
* * *
1111686 TCTAATGTATGGTTACGACCCTGGTTAGA
64 TCTAACGTATGGTTAC-AACC---TT-GG
* * * * *
1111715 TTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAACTCTTCTCT-T-TCCT
1 TCAGATTC-TTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAA-TCTAC-CTATCTCCT
* * * *
1111778 GTCTAACGTATGGCTACGA-CTCTAG
63 ATCTAACGTATGGTTACAACCT-TGG
* * * * ** * * *
1111803 TCAGATTGTTTTCATTCCAATTTGATGTATGGCTACCACTTTGGTCAAATCTACCTCTCTTCTGT
1 TCAGATT-CTTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTATCTCCTAT
* *
1111868 GTAACGTATGGTTACTACCTTGG
65 CTAACGTATGGTTACAACCTTGG
* ** * * * * * * * * *
1111891 TCAAATTCTTTTCATTTGGAATT-ATCGTATGGTTATCATCTTGGTCAAATCTGCCTCTCTCATG
1 TCAGATTC-TTTCATTCCGATTTGAT-ATATGGTTACCACCCTGGTCAAATCTACCTATCTCCTA
* * * * *
1111955 TTTGACATATGGTTACCACCTTAG
64 TCTAACGTATGGTTACAACCTTGG
*** * * * * * *
1111979 TCAGATTCTTTTCATTCCTG-TTTGACGCATGGTTATCACCCTAGTCGAAT-T-CATTTTCTTCT
1 TCAGATTC-TTTCATTCC-GATTTGATATATGGTTACCACCCTGGTCAAATCTAC-CTATCTCCT
* * ** * * *
1112041 AGTCTAACCTACGGTCGCCACCCTCG
63 A-TCTAACGTATGGTTACAACCTTGG
* * * * * * * *
1112067 CCAGATTTTTTTTATTCCGATTTGATGTATGGTTACAACCTTGGTCAAATCTACCTGTCTCCTGT
1 TCAGA-TTCTTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTATCTCCTAT
* *
1112132 CTAACGTACGGTTACTACCTTGG
65 CTAACGTATGGTTACAACCTTGG
* ** * * * * * *
1112155 TCAAATTCATTTCATTCTAATTGGACATATGGTTACCACCTTGGTCAAATTTACATTTCTCCTA-
1 TCAGATTC-TTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTATCTCCTAT
* * *
1112219 CTAACGTATGGTTACCACCCTGA
65 CTAACGTATGGTTACAACCTTGG
* * * * *
1112242 TCAGATTCTTTTCATTTCGATTTGATATATGGTTACCACCCTGGTTAAA-CTTTCCTATTTCCTT
1 TCAGATTC-TTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAATC-TACCTATCTCCTA
* * * * **
1112306 TCTGATGAATGCTTACGTCCTTGG
64 TCTAACGTATGGTTACAACCTTGG
* * * * * *
1112330 TCAGATTCTTTCCATTCCGATTTGTTGTGTGGTTGCCACCCTGTTCAAATCTACCTCTCTCCTAT
1 TCAGATTCTTT-CATTCCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTATCTCCTAT
*
1112395 CTGACGTATGGTTACAACCTTGG
65 CTAACGTATGGTTACAACCTTGG
1112418 TCA
1 TCA
1112421 AACCAACCTC
Statistics
Matches: 672, Mismatches: 184, Indels: 62
0.73 0.20 0.07
Matches are distributed among these distances:
86 3 0.00
87 91 0.14
88 479 0.71
89 22 0.03
90 1 0.00
91 1 0.00
92 1 0.00
93 71 0.11
94 1 0.00
95 2 0.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (87 bp):
TCAGATTCTTTCATTCCGATTTGATATATGGTTACCACCCTGGTCAAATCTACCTATCTCCTATC
TAACGTATGGTTACAACCTTGG
Found at i:1112530 original size:88 final size:88
Alignment explanation
Indices: 1112436--1112722 Score: 278
Period size: 88 Copynumber: 3.2 Consensus size: 88
1112426 ACCTCTCCCT
* * * * *
1112436 TGTCTGACGTATGGTTACCACTC-GGGTTAGCTTCTTTTCATTTCT-ATTTGACATATGGTTTCC
1 TGTCTAACGTATGGTTACCAC-CAAGGTCAGATTCTTTTCATTTCTGATTTGACATATGGTTACC
*
1112499 ACCCTGGTCAAATTCACCTCTTTCC
65 ACCCTGGTCAAATTC-TCTCTTTCC
* * * * *
1112524 TGTCTGATGTATGGTTACCACCATGCTCAGATTCTTTTCA-TTCTGATTTGACACATGGTTACCA
1 TGTCTAACGTATGGTTACCACCAAGGTCAGATTCTTTTCATTTCTGATTTGACATATGGTTACCA
** * *
1112588 CAATGGTTAAATT-TGTCTTTCTTC
66 CCCTGGTCAAATTCTCTCTTTC--C
* * * * *
1112612 TATCTAACGTACGGTTACCACCCTAGGACAGATTCTTTTCATTT-TGATTTAACATATGGTTACC
1 TGTCTAACGTATGGTTACCA-CCAAGGTCAGATTCTTTTCATTTCTGATTTGACATATGGTTACC
*
1112676 ACCCTGGTCAAACTCTTCTCTTTCC
65 ACCCTGGTCAAATTC-TCTCTTTCC
* *
1112701 TGTCTAATGTATGATTACCACC
1 TGTCTAACGTATGGTTACCACC
1112723 TTGGTTAGAT
Statistics
Matches: 160, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
86 6 0.04
87 5 0.03
88 79 0.49
89 61 0.38
90 2 0.01
91 7 0.04
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (88 bp):
TGTCTAACGTATGGTTACCACCAAGGTCAGATTCTTTTCATTTCTGATTTGACATATGGTTACCA
CCCTGGTCAAATTCTCTCTTTCC
Found at i:1112707 original size:89 final size:87
Alignment explanation
Indices: 1112467--1112722 Score: 282
Period size: 89 Copynumber: 2.9 Consensus size: 87
1112457 TCGGGTTAGC
* ** *
1112467 TTCTTTTCATTTCT-ATTTGACATATGGTTTCCACCCTGGTCAAATTCACCTCTTTCCTGTCTGA
1 TTCTTTTCATTT-TGATTTGACATATGGTTACCACCCTGGTCAAA-TCTTCTCTTTCCTGTCTAA
*
1112531 TGTATGGTTACCACCATGCTCAGA
64 TGTATGGTTACCACCATGCACAGA
* * ** * * *
1112555 TTCTTTTCATTCTGATTTGACACATGGTTACCACAATGGTTAAAT-TTGTCTTTCTTCTATCTAA
1 TTCTTTTCATTTTGATTTGACATATGGTTACCACCCTGGTCAAATCTTCTCTTTC--CTGTCTAA
* * * *
1112619 CGTACGGTTACCACCCTAGGACAGA
64 TGTATGGTTACCACCAT-GCACAGA
*
1112644 TTCTTTTCATTTTGATTTAACATATGGTTACCACCCTGGTCAAACTCTTCTCTTTCCTGTCTAAT
1 TTCTTTTCATTTTGATTTGACATATGGTTACCACCCTGGTCAAA-TCTTCTCTTTCCTGTCTAAT
*
1112709 GTATGATTACCACC
65 GTATGGTTACCACC
1112723 TTGGTTAGAT
Statistics
Matches: 135, Mismatches: 27, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
86 6 0.04
87 2 0.01
88 56 0.41
89 62 0.46
90 1 0.01
91 8 0.06
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (87 bp):
TTCTTTTCATTTTGATTTGACATATGGTTACCACCCTGGTCAAATCTTCTCTTTCCTGTCTAATG
TATGGTTACCACCATGCACAGA
Found at i:1112794 original size:177 final size:177
Alignment explanation
Indices: 1112467--1112794 Score: 372
Period size: 177 Copynumber: 1.9 Consensus size: 177
1112457 TCGGGTTAGC
* * * *
1112467 TTCTTTTCATTTCTATTTGACATATGGTTTCCACCCTGGTCAAATTCACCTCTTTCCTGTCTGAT
1 TTCTTTTCATTTCTATTTAACATATGGTTACCACCCTGGTCAAACTCACCTCTTTCCTGTCTAAT
* * * * ** * * *
1112532 GTATGGTTACCACCATGCTCAGATTCTTTTCATTCTGATTTGACACATGGTTACCACAATGGTTA
66 GTATGATTACCACCATGCTCAGATTATATTAATTCCAATTTGACACATGGTAACCACAATAGTCA
*** * *
1112597 AATTTGTCTTTCTTCTATCTAACGTACGGTTACCACCCTAGGACAGA
131 AATTCCACCTCCTTCTATCTAACGTACGGTTACCACCCTAGGACAGA
**
1112644 TTCTTTTCATTT-TGATTTAACATATGGTTACCACCCTGGTCAAACTCTTCTCTTTCCTGTCTAA
1 TTCTTTTCATTTCT-ATTTAACATATGGTTACCACCCTGGTCAAACTCACCTCTTTCCTGTCTAA
* * * * * * **
1112708 TGTATGATTACCACCTTGGTTAGATTATATTAATTCCAATTTGATATATGGTAAGCACCCTAGTC
65 TGTATGATTACCACCATGCTCAGATTATATTAATTCCAATTTGACACATGGTAACCACAATAGTC
1112773 AAA-TCCACCTCCTTCCTATCTA
130 AAATTCCACCTCCTT-CTATCTA
1112795 GCATGTAAGA
Statistics
Matches: 121, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
176 7 0.06
177 114 0.94
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.40
Consensus pattern (177 bp):
TTCTTTTCATTTCTATTTAACATATGGTTACCACCCTGGTCAAACTCACCTCTTTCCTGTCTAAT
GTATGATTACCACCATGCTCAGATTATATTAATTCCAATTTGACACATGGTAACCACAATAGTCA
AATTCCACCTCCTTCTATCTAACGTACGGTTACCACCCTAGGACAGA
Found at i:1112934 original size:159 final size:161
Alignment explanation
Indices: 1112641--1112936 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 161
1112631 ACCCTAGGAC
* *
1112641 AGATTCTTTTCATTTTGATTTAACATATGGTTACCACCCTGGTCAAACTCTTCTCTTTCCTGTCT
1 AGATTCTTTTCATTTTGATTTAACACATGGTTACCACCCTGGTCAAACTCTTATCTTTCCTGTCT
** * * * *
1112706 AATGTATGATTACCACCTTGGTTAGATTATATTAATTCCAATTTGATATATGGTAAGCACCCTAG
66 AACATATGATTACCACCCTAGTTAAATTATATTAATTCCAATTTGATATATGGTAACCACCCTAG
1112771 TCAAATCCACCTCCTTCCTATCTAGCATGTA
131 TCAAATCCACCTCCTTCCTATCTAGCATGTA
* * * *
1112802 AGATTCTTTTCATTTT-AGTTTGATACATGGTTACCACCTTGGTCAAA-T-TTATCTTTCTTGTC
1 AGATTCTTTTCATTTTGA-TTTAACACATGGTTACCACCCTGGTCAAACTCTTATCTTTCCTGTC
* * * * * * *
1112864 TAACATTTGGTTACCACCCTAGTTAAATTCTTTTCAA-TCTAATTTGATGTATGGTTACCACCCT
65 TAACATATGATTACCACCCTAGTTAAATTATATT-AATTCCAATTTGATATATGGTAACCACCCT
1112928 -GATCAAATC
129 AG-TCAAATC
1112937 TTCCTTTCTC
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
158 1 0.01
159 67 0.59
160 4 0.04
161 41 0.36
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.41
Consensus pattern (161 bp):
AGATTCTTTTCATTTTGATTTAACACATGGTTACCACCCTGGTCAAACTCTTATCTTTCCTGTCT
AACATATGATTACCACCCTAGTTAAATTATATTAATTCCAATTTGATATATGGTAACCACCCTAG
TCAAATCCACCTCCTTCCTATCTAGCATGTA
Found at i:1113016 original size:247 final size:250
Alignment explanation
Indices: 1112552--1113018 Score: 522
Period size: 247 Copynumber: 1.9 Consensus size: 250
1112542 CACCATGCTC
* *
1112552 AGATTCTTTTCATTCTGATTTGACACATGGTTACCACAATGGTTAAATTTGTCTTTCTTCTATCT
1 AGATTCTTTTCATTCTGATTTGACACATGGTTACCACAATGGTCAAATTTATCTTTCTTCTATCT
* * * *
1112617 AACGTACGGTTACCACCCTAGGACAGATTCTTTTCATTTTGATTTAACATATGGTTACCACCCTG
66 AACATACGGTTACCACCCTAGGACAGATTCTTTTCAATCTAATTTAACATATGGTTACCACCCTG
* * * * * *
1112682 GTCAAACTCTTCTCTTTCCTGTCTAATGTATGATTACCACCTTGGTTAGATTATATTAATTCCAA
131 ATCAAACTCTTCTCTTTCCTATCGAATGTATGATTACCACCCTGGTCAGATCATATTAATTCCAA
* * *
1112747 TTTGATATATGGTAAGCACCCTAGTCAAATCCACCTCCTTCCTATCTAGCATGTA
196 TTTGACATATGCTAACCACCCTAGTCAAATCCACCTCCTTCCTATCTAGCATGTA
* * ** *
1112802 AGATTCTTTTCATT-TTAGTTTGATACATGGTTACCACCTTGGTCAAATTTATCTTTC-T-TGTC
1 AGATTCTTTTCATTCTGA-TTTGACACATGGTTACCACAATGGTCAAATTTATCTTTCTTCTATC
** * * **
1112864 TAACATTTGGTTACCACCCTAGTTA-A-ATTCTTTTCAATCTAATTTGATGTATGGTTACCACCC
65 TAACATACGGTTACCACCCTAG-GACAGATTCTTTTCAATCTAATTTAACATATGGTTACCACCC
* * *
1112927 TGATCAAA-TCTTC-CTTTCTCTAATCCGACT-TATGGTTACCACCCTGGTCAGAATCAT-TTTA
129 TGATCAAACTCTTCTCTTTC-CT-AT-CGAATGTATGATTACCACCCTGGTCAG-ATCATATTAA
**
1112988 TTCTGATTTGACATATAGCT-ACCACCCTAGT
190 TTCCAATTTGACATAT-GCTAACCACCCTAGT
1113019 TAATTCTGTC
Statistics
Matches: 179, Mismatches: 31, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
245 5 0.03
246 7 0.04
247 83 0.46
248 32 0.18
249 4 0.02
250 48 0.27
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (250 bp):
AGATTCTTTTCATTCTGATTTGACACATGGTTACCACAATGGTCAAATTTATCTTTCTTCTATCT
AACATACGGTTACCACCCTAGGACAGATTCTTTTCAATCTAATTTAACATATGGTTACCACCCTG
ATCAAACTCTTCTCTTTCCTATCGAATGTATGATTACCACCCTGGTCAGATCATATTAATTCCAA
TTTGACATATGCTAACCACCCTAGTCAAATCCACCTCCTTCCTATCTAGCATGTA
Found at i:1113248 original size:88 final size:89
Alignment explanation
Indices: 1112828--1113551 Score: 341
Period size: 88 Copynumber: 8.3 Consensus size: 89
1112818 AGTTTGATAC
* * * ** * *
1112828 ATGGTTACCACCTTGGTCAAATTTA--TCTTTCT-TGTCTAACATTTGGTTACCACCCTAGTTAA
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCTATATCTAACATACGGTTACCACCCTGGTCAA
* * ** *
1112890 ATTCTTTTCAATCTAATTTGATGT
66 ATTCTTTTTATTCCGATTTGACGT
* * * * ** * *
1112914 ATGGTTACCACCCTGATCAAATCTTCCTTTCTCTA-ATCCGACTTATGGTTACCACCCTGGTCAG
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCTATATCTAACATACGGTTACCACCCTGGTCA-
* * *
1112978 AA-TCATTTTATTCTGATTTGACAT
65 AATTCTTTTTATTCCGATTTGACGT
* * * * * * * * * ** * * * * *
1113002 ATAGCTACCACCCTAGTTAATTCT--GTCTATCATCTATCTAATGTATGGCTACAACCCCGATCA
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTC-TATATCTAACATACGGTTACCACCCTGGTCA
* * * **
1113065 GATTCTTTTCATTTCGATTTGACAA
65 AATTCTTTTTATTCCGATTTGACGT
* * * * * ** ** * *
1113090 ATGGTTACCACCTTGGTCAAA-CT-CTTCTTTTTCCTATCTATC-GCCTGGTTACGGCCCTAGTT
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCT-ATATCTAACATAC-GGTTACCACCCTGGTC
* * * *
1113152 AGACTCTTTTTAATCCGATTTGATGT
64 AAATTCTTTTTATTCCGATTTGACGT
* * * * *
1113178 ATGGTTACCACCCTGGTCAAATCTACCCCTCTCT-TATCTAACGTACGGTTACTACCTTGGTCAA
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCTATATCTAACATACGGTTACCACCCTGGTCAA
* ** * *
1113242 ATTCTTTTGATTTGGAATTAACGT
66 ATTCTTTTTATTCCGATTTGACGT
* * * ** *
1113266 ATGGTTACCATCTTGGTCAAATCTGCCTCTCT-TATATGTAATGTACGGTTACCACCCTGGTCAC
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCTATATCTAACATACGGTTACCACCCTGGTCAA
* * * *
1113330 ATT-TTTTCATCCCTATTTAACGT
66 ATTCTTTTTATTCCGATTTGACGT
* * * * * *
1113353 ATGGTTACCACCCTGGTCAAAT-TCACTTCTTTCCTGT-TC-GACATATGGTTACCACCCTGGTC
1 ATGGTTACCACCTTGGTCAAATCT-ACCTCTCT-CTATATCTAACATACGGTTACCACCCTGGTC
*
1113415 AAATT-TTTTTCATTCCGATTTGATGT
64 AAATTCTTTTT-ATTCCGATTTGACGT
* * * * * * * * **
1113441 AGGGTTACGAACTTGGTCAAATCTACCTCTCTC-CTGTCTAACATATGGTAACTACATTGGTCAA
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCTATATCTAACATACGGTTACCACCCTGGTCAA
* * **
1113505 ATTCATTTCATTTTGATTTGACGT
66 ATTCTTTTTATTCCGATTTGACGT
* *
1113529 ATGGTTGCCATCTTGGTCAAATC
1 ATGGTTACCACCTTGGTCAAATC
1113552 CATCTCCTTC
Statistics
Matches: 470, Mismatches: 146, Indels: 42
0.71 0.22 0.06
Matches are distributed among these distances:
86 27 0.06
87 75 0.16
88 352 0.75
89 11 0.02
90 5 0.01
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (89 bp):
ATGGTTACCACCTTGGTCAAATCTACCTCTCTCTATATCTAACATACGGTTACCACCCTGGTCAA
ATTCTTTTTATTCCGATTTGACGT
Found at i:1113447 original size:44 final size:44
Alignment explanation
Indices: 1113312--1113462 Score: 144
Period size: 44 Copynumber: 3.5 Consensus size: 44
1113302 TGTAATGTAC
* * * *
1113312 GGTTACCACCCTGGTCACA-TTTTTTCATCCCTATTTAACGTAT
1 GGTTACCACCCTGGTCAAATTTTTTTCATTCCGATTTGACGTAT
*** * * *
1113355 GGTTACCACCCTGGTCAAATTCACTTCTTTCCTG-TTCGACATAT
1 GGTTACCACCCTGGTCAAATTTTTTTCATTCC-GATTTGACGTAT
* *
1113399 GGTTACCACCCTGGTCAAATTTTTTTCATTCCGATTTGATGTAG
1 GGTTACCACCCTGGTCAAATTTTTTTCATTCCGATTTGACGTAT
* * *
1113443 GGTTACGAACTTGGTCAAAT
1 GGTTACCACCCTGGTCAAAT
1113463 CTACCTCTCT
Statistics
Matches: 84, Mismatches: 21, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
43 19 0.23
44 65 0.77
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (44 bp):
GGTTACCACCCTGGTCAAATTTTTTTCATTCCGATTTGACGTAT
Found at i:1114044 original size:159 final size:161
Alignment explanation
Indices: 1113752--1114047 Score: 373
Period size: 159 Copynumber: 1.9 Consensus size: 161
1113742 CACCCTGATC
* * * *
1113752 AGATTCTTTTTATTTCGATTTGATATATGGTTACCACCATGGTCCAACTCTCCTCCGTCTTGTTT
1 AGATTCTTTTCATTTCGATTTGATACATGGTTACCACCATGGTCCAAATCTCCTCCGTCTTGTCT
* ** *
1113817 GATGTATGGTTACAAACCTAGTTAGATTCTATTCATTCCAATTTGATATATGGTGACCACCCTAG
66 AACATATGGTTACAAACCTAGTTAAATTCTATTCATTCCAATTTGATATATGGTGACCACCCTAG
1113882 TCAAATCCACCACCTTCTTCTCTAACGTGTT
131 TCAAATCCACCACCTTCTTCTCTAACGTGTT
* * **
1113913 AGATTCTTTTCATTTTGATTTGATACATGGTTACCACCTTGGT-CAAAT-TTGTCTC-TCTTGTC
1 AGATTCTTTTCATTTCGATTTGATACATGGTTACCACCATGGTCCAAATCTCCTC-CGTCTTGTC
* * * ** * * * *
1113975 TAACATATGGTTACCACCCTAGTTAAATTCTTTTCATTCTGATTTGATGTATGGTTACTACCCTG
65 TAACATATGGTTACAAACCTAGTTAAATTCTATTCATTCCAATTTGATATATGGTGACCACCCTA
1114040 GTCAAATC
130 GTCAAATC
1114048 TTCCTCTCTC
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
159 69 0.61
160 5 0.04
161 39 0.35
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (161 bp):
AGATTCTTTTCATTTCGATTTGATACATGGTTACCACCATGGTCCAAATCTCCTCCGTCTTGTCT
AACATATGGTTACAAACCTAGTTAAATTCTATTCATTCCAATTTGATATATGGTGACCACCCTAG
TCAAATCCACCACCTTCTTCTCTAACGTGTT
Found at i:1114108 original size:88 final size:85
Alignment explanation
Indices: 1113913--1114320 Score: 303
Period size: 88 Copynumber: 4.7 Consensus size: 85
1113903 CTAACGTGTT
* * * * *** *
1113913 AGATTCTTTTCATTTTGATTTGATACATGGTTACCACCTTGGTCAAATTTGTCTCTCTTGTCTAA
1 AGATTCTTTTCATTCTGATTTGAT-GATGGTTACCACCCTGGTCAAATTTCTCTCTCCAATCCAA
*
1113978 CATATGGTTACCACCCTAGTT
65 CATATGGTTACCACCCTAGTC
* *
1113999 AAATTCTTTTCATTCTGATTTGATGTATGGTTACTACCCTGGTCAAATCTTCCTCTCTCCAATCC
1 AGATTCTTTTCATTCTGATTTGATG-ATGGTTACCACCCTGGTCAAAT-TT-CTCTCTCCAATCC
* ** *
1114064 AACCTATGGTTATGACCCTGGTC
63 AACATATGGTTACCACCCTAGTC
* * * * * * * **
1114087 AGATTCATTTCATTCTAATTTGACGATGGCTACCACCCTGGTCAAATTTATCTATCCTTTATCTG
1 AGATTCTTTTCATTCTGATTTGATGATGGTTACCACCCTGGTCAAATTTCTCTCTCC--AATCCA
** * * *
1114152 ATGTATGGTTACCACCTTGGTT
64 ACATATGGTTACCACCCTAGTC
* * ** * * **
1114174 AGATTCTTTCCATTTTGATTTGACAAATGGTTACCACCCTGCTCAAACTCTTCTCTCTCCTATTT
1 AGATTCTTTTCATTCTGATTTGA-TGATGGTTACCACCCTGGTCAAA-T-TTCTCTCTCCAATCC
* * * *
1114239 GACATATGGTTACGACCCTGGCC
63 AACATATGGTTACCACCCTAGTC
** * * *
1114262 AGATGGTTTTTATTCTGATTTGATGATGGTTACCACCTTGCTCAAATTTACCTCTCTCC
1 AGATTCTTTTCATTCTGATTTGATGATGGTTACCACCCTGGTCAAATTT--CTCTCTCC
1114321 TGTCTGACGT
Statistics
Matches: 255, Mismatches: 57, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
85 8 0.03
86 45 0.18
87 88 0.35
88 105 0.41
89 1 0.00
90 8 0.03
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (85 bp):
AGATTCTTTTCATTCTGATTTGATGATGGTTACCACCCTGGTCAAATTTCTCTCTCCAATCCAAC
ATATGGTTACCACCCTAGTC
Found at i:1114178 original size:87 final size:85
Alignment explanation
Indices: 1113913--1114384 Score: 372
Period size: 87 Copynumber: 5.4 Consensus size: 85
1113903 CTAACGTGTT
* * * * * *
1113913 AGATTCTTTTCATTTTGATTTGATAC-ATGGTTACCACCTTGGTCAAATTTGTCTCTCTTGTCTA
1 AGATTCTTTTCATTCTGATTTG--ACGATGGTTACCACCCTGGTCAAATTTATCTCTCCTATCTG
* *
1113977 ACATATGGTTACCACCCTAGTT
64 ACATATGGTTACCACCCTGGTC
* * * * * *
1113999 AAATTCTTTTCATTCTGATTTGATGTATGGTTACTACCCTGGTCAAATCTTCCTCTCTCCAATCC
1 AGATTCTTTTCATTCTGATTTGACG-ATGGTTACCACCCTGGTCAAAT-TT-ATCTCTCCTATCT
* * **
1114064 AACCTATGGTTATGACCCTGGTC
63 GACATATGGTTACCACCCTGGTC
* * * *
1114087 AGATTCATTTCATTCTAATTTGACGATGGCTACCACCCTGGTCAAATTTATCTATCCTTTATCTG
1 AGATTCTTTTCATTCTGATTTGACGATGGTTACCACCCTGGTCAAATTTATCTCTCC--TATCTG
** * *
1114152 ATGTATGGTTACCACCTTGGTT
64 ACATATGGTTACCACCCTGGTC
* * * * * *
1114174 AGATTCTTTCCATTTTGATTTGACAAATGGTTACCACCCTGCTCAAACTCTTCTCTCTCCTATTT
1 AGATTCTTTTCATTCTGATTTGAC-GATGGTTACCACCCTGGTCAAA-T-TTATCTCTCCTATCT
* *
1114239 GACATATGGTTACGACCCTGGCC
63 GACATATGGTTACCACCCTGGTC
** * * * * *
1114262 AGATGGTTTTTATTCTGATTTGATGATGGTTACCACCTTGCTCAAATTTACCTCTCTCCTGTCTG
1 AGATTCTTTTCATTCTGATTTGACGATGGTTACCACCCTGGTCAAATTTA--TCTCTCCTATCTG
* * *
1114327 ACGTATGGTTACTACCTTGGTC
64 ACATATGGTTACCACCCTGGTC
* * * *
1114349 AAATTCATTTCATT-TGGAATTAACGTATGGTTACCA
1 AGATTCTTTTCATTCT-GATTTGACG-ATGGTTACCA
1114385 TCTCGGTCAA
Statistics
Matches: 302, Mismatches: 71, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
84 1 0.00
85 8 0.03
86 44 0.15
87 125 0.41
88 115 0.38
89 1 0.00
90 8 0.03
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (85 bp):
AGATTCTTTTCATTCTGATTTGACGATGGTTACCACCCTGGTCAAATTTATCTCTCCTATCTGAC
ATATGGTTACCACCCTGGTC
Found at i:1114381 original size:175 final size:171
Alignment explanation
Indices: 1113913--1114407 Score: 490
Period size: 175 Copynumber: 2.8 Consensus size: 171
1113903 CTAACGTGTT
* * * * * *
1113913 AGATTCTTTTCATTTTGATTTGATACATGGTTACCACCTTGGTCAAATTTGTCTCTCTTGTCTAA
1 AGATGCTTTTCATTCTGATTTGAT-GATGGTTACCACCTTGGTCAAATTTATCTCTCCTGTCTGA
* * * * * *
1113978 CATATGGTTACCACCCTAGTTAAATTCTTTTCATTCTGATTTGATGTATGGTTACTACCCTGGTC
65 CGTATGGTTACCACCTTGGTTAAATTC-TTTCATT-TGATTTGACGTATGGTTACCACCCTGCTC
* * *
1114043 AAATCTTCCTCTCTCCAATCCAACCTATGGTTATGACCCTGGTC
128 AAATCTTCCTCTCTCCAATCCAACATATGGTTACGACCCTGGCC
* * * * * * * *
1114087 AGATTCATTTCATTCTAATTTGACGATGGCTACCACCCTGGTCAAATTTATCTATCCTTTATCTG
1 AGATGCTTTTCATTCTGATTTGATGATGGTTACCACCTTGGTCAAATTTATCTCTCC--TGTCTG
* * **
1114152 ATGTATGGTTACCACCTTGGTTAGATTCTTTCCATTTTGATTTGACAAATGGTTACCACCCTGCT
64 ACGTATGGTTACCACCTTGGTTAAATTCTTT-CA-TTTGATTTGACGTATGGTTACCACCCTGCT
* ***
1114217 CAAACTCTT-CTCTCTCCTATTTGACATATGGTTACGACCCTGGCC
127 CAAA-TCTTCCTCTCTCCAATCCAACATATGGTTACGACCCTGGCC
* * *
1114262 AGATGGTTTTTATTCTGATTTGATGATGGTTACCACCTTGCTCAAATTTACCTCTCTCCTGTCTG
1 AGATGCTTTTCATTCTGATTTGATGATGGTTACCACCTTGGTCAAATTTA--TCTCTCCTGTCTG
* * * * * *
1114327 ACGTATGGTTACTACCTTGGTCAAATTCATTTCATTTGGAATTAACGTATGGTTACCA-TCTCGG
64 ACGTATGGTTACCACCTTGGTTAAATTC-TTTCATTT-GATTTGACGTATGGTTACCACCCT-GC
*
1114391 TCAAATCTGCCTCTCTC
126 TCAAATCTTCCTCTCTC
1114408 ATGTGTAACG
Statistics
Matches: 259, Mismatches: 51, Indels: 21
0.78 0.15 0.06
Matches are distributed among these distances:
173 27 0.10
174 31 0.12
175 186 0.72
176 9 0.03
177 6 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (171 bp):
AGATGCTTTTCATTCTGATTTGATGATGGTTACCACCTTGGTCAAATTTATCTCTCCTGTCTGAC
GTATGGTTACCACCTTGGTTAAATTCTTTCATTTGATTTGACGTATGGTTACCACCCTGCTCAAA
TCTTCCTCTCTCCAATCCAACATATGGTTACGACCCTGGCC
Found at i:1114586 original size:44 final size:43
Alignment explanation
Indices: 1114327--1114617 Score: 157
Period size: 44 Copynumber: 6.6 Consensus size: 43
1114317 CTCCTGTCTG
* *
1114327 ACGTATGGTTACTACCTTGGTCAAATTCA-TTTCATTTGGAATTA
1 ACGTATGGTTACCACCTTGGTCAAATTCATTTTCATTTTG--TTA
* * * * *
1114371 ACGTATGGTTACCATCTCGGTCAAATCTGCCTCTCTCA-TGTG-TA
1 ACGTATGGTTACCACCTTGGTCAAAT-T-CAT-TTTCATTTTGTTA
* * * *
1114415 ACGTATGGTTACCACCCTAGTCAAATTCA-CTTC-TTTCCTGTTTG
1 ACGTATGGTTACCACCTTGGTCAAATTCATTTTCATTT--TG-TTA
* * * * * * *
1114459 ACATATAGTTACCACCCTAGTTAGATTC-TTTTCATTCTGATTA
1 ACGTATGGTTACCACCTTGGTCAAATTCATTTTCATTTTG-TTA
* * * * *
1114502 GATGTATGGTTGCCACCCTGGTCAAA-TCTACCTCTC-TTTTGTCTA
1 -ACGTATGGTTACCACCTTGGTCAAATTC-A-TTTTCATTTTGT-TA
* *
1114547 ACATATGGTTACCACCTTGGTCAAATTCATTTTCATTTTGATTTG
1 ACGTATGGTTACCACCTTGGTCAAATTCATTTTCATTTTG--TTA
*
1114592 ACGTATGGTTACCAACTTGGTCAAAT
1 ACGTATGGTTACCACCTTGGTCAAAT
1114618 CCACCTCTTT
Statistics
Matches: 184, Mismatches: 43, Indels: 39
0.69 0.16 0.15
Matches are distributed among these distances:
40 3 0.02
42 3 0.02
43 10 0.05
44 121 0.66
45 36 0.20
46 5 0.03
47 2 0.01
48 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (43 bp):
ACGTATGGTTACCACCTTGGTCAAATTCATTTTCATTTTGTTA
Found at i:1114613 original size:89 final size:88
Alignment explanation
Indices: 1114415--1114636 Score: 248
Period size: 88 Copynumber: 2.5 Consensus size: 88
1114405 CTCATGTGTA
* * * * * * *
1114415 ACGTATGGTTACCACCCTAGTCAAATTCACTTCTTTCCTGTTTGACATATAGTTACCACCCTAGT
1 ACGTATGGTTACCAACCTGGTCAAATCCACCTCTTTCTTGTCTAACATATAGTTACCACCCTAGT
* *
1114480 TAGATTCTTTTCATTCTGATTAG
66 CAAATTCTTTTCATTCTGATTAG
* * * * * * *
1114503 ATGTATGGTTGCCACCCTGGTCAAATCTACCTCTCTT-TTGTCTAACATATGGTTACCACCTTGG
1 ACGTATGGTTACCAACCTGGTCAAATCCACCTCT-TTCTTGTCTAACATATAGTTACCACCCTAG
* *
1114567 TCAAATTCATTTTCATTTTGATTTG
65 TCAAATTC-TTTTCATTCTGATTAG
*
1114592 ACGTATGGTTACCAACTTGGTCAAATCCACCTCTTTCTTGTCTAA
1 ACGTATGGTTACCAACCTGGTCAAATCCACCTCTTTCTTGTCTAA
1114637 TGTATTAGAT
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
88 57 0.52
89 53 0.48
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
ACGTATGGTTACCAACCTGGTCAAATCCACCTCTTTCTTGTCTAACATATAGTTACCACCCTAGT
CAAATTCTTTTCATTCTGATTAG
Found at i:1114811 original size:44 final size:44
Alignment explanation
Indices: 1114706--1114814 Score: 105
Period size: 44 Copynumber: 2.5 Consensus size: 44
1114696 ACTTTCCTGT
* * * * *
1114706 TAGACGTATGGTTACCACCCTGGTTAAATTCTTTTCATTCTGAT
1 TAGACGTATGGTTACCACCCTAGTCAAATTCCTTTCATCCTGAA
* * * *
1114750 TCGATGTATTGTCACCACCCTAGTCAAATCTGCCTTTC-TCCT-AA
1 TAGACGTATGGTTACCACCCTAGTCAAAT-T-CCTTTCATCCTGAA
1114794 TAGACGTATGGTTACCACCCT
1 TAGACGTATGGTTACCACCCT
1114815 GATCAGATTA
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
44 41 0.82
45 4 0.08
46 5 0.10
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.36
Consensus pattern (44 bp):
TAGACGTATGGTTACCACCCTAGTCAAATTCCTTTCATCCTGAA
Found at i:1115024 original size:44 final size:44
Alignment explanation
Indices: 1114932--1115127 Score: 139
Period size: 44 Copynumber: 4.5 Consensus size: 44
1114922 CGGTTTGATG
* * * *
1114932 TATGGTTACCACCATGGTCAAATCTACCTCTCTCCAGTCTAATC-
1 TATGGTTACCACCCTGGTCAAATCCACCTCTCTCCTGTCTGA-CA
* *
1114976 TATGGTTACCACCCTGGTCAAATCCACCTCTTTTCTGTCTGACA
1 TATGGTTACCACCCTGGTCAAATCCACCTCTCTCCTGTCTGACA
* * * *** * * **
1115020 TATGGTTACCACTC-GAGTCAGATTCTTTTCGT-TCCTATTTGATG
1 TATGGTTACCACCCTG-GTCAAATCCACCTC-TCTCCTGTCTGACA
* * * *
1115064 TATGGTTACCACCCTGGCCAAATTCACCT-TCTTCTTGTCTGATA
1 TATGGTTACCACCCTGGTCAAATCCACCTCTC-TCCTGTCTGACA
*
1115108 TACGGTTACCACCCTGGTCA
1 TATGGTTACCACCCTGGTCA
1115128 GATTCTTTTC
Statistics
Matches: 117, Mismatches: 29, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 112 0.96
45 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (44 bp):
TATGGTTACCACCCTGGTCAAATCCACCTCTCTCCTGTCTGACA
Found at i:1115074 original size:88 final size:87
Alignment explanation
Indices: 1114976--1115365 Score: 308
Period size: 88 Copynumber: 4.5 Consensus size: 87
1114966 CAGTCTAATC
* *
1114976 TATGGTTACCACCCTGGTCAAATCCACCTCTTTTCTGTCTGACATATGGTTACCACTC-GAGTCA
1 TATGGTTACCACCCTGGTCAAATCCACCTCTCTTCTGTCTGACATATGGTTACCACCCTG-GTCA
* **
1115040 GATTCTTTTCGTTCCTATTTGATG
65 GATTCTTTTCATT-CTATTTGACA
* * * *
1115064 TATGGTTACCACCCTGGCCAAATTCACCT-TCTTCTTGTCTGATATACGGTTACCACCCTGGTCA
1 TATGGTTACCACCCTGGTCAAATCCACCTCTCTTC-TGTCTGACATATGGTTACCACCCTGGTCA
**
1115128 GATTCTTTTCATTGGATTTGACA
65 GATTCTTTTCATTCTATTTGACA
* * * **** * * ** *
1115151 CATGGTTACCACCTTGGTTAAATTTGTCTCTCTTCTATCTAATGTATGGTTACCACTCTAGG-CA
1 TATGGTTACCACCCTGGTCAAATCCACCTCTCTTCTGTCTGACATATGGTTACCACCCT-GGTCA
* *
1115215 GATTCTTTTCATTTTGATTTAACA
65 GATTCTTTTCATTCT-ATTTGACA
* ** * * *
1115239 TACGGTTACCACCCTGGTCAAA-CTTTCCTC-ATTCTTGTTTGACGTATGGTTACCACCCTGGT-
1 TATGGTTACCACCCTGGTCAAATC-CACCTCTCTTC-TGTCTGACATATGGTTACCACCCTGGTC
* * * *
1115301 TGATTCTTTTCTTTCCAATTTGATA
64 AGATTCTTTTCATT-CTATTTGACA
* * *
1115326 TATGGTGACCACCCTAGCCAAATCCACCTC-CTTCCTGTCT
1 TATGGTTACCACCCTGGTCAAATCCACCTCTCTT-CTGTCT
1115366 AACGTGTTAG
Statistics
Matches: 238, Mismatches: 53, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
87 117 0.49
88 120 0.50
89 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (87 bp):
TATGGTTACCACCCTGGTCAAATCCACCTCTCTTCTGTCTGACATATGGTTACCACCCTGGTCAG
ATTCTTTTCATTCTATTTGACA
Found at i:1115491 original size:44 final size:44
Alignment explanation
Indices: 1115438--1115682 Score: 212
Period size: 44 Copynumber: 5.6 Consensus size: 44
1115428 CTCTCCAATC
*
1115438 TGACCTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATT
1 TGACATATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATT
* * *
1115482 TGACATATGGTTACCACCCTGGTCA-AATCTATCTATC-TT-TTATC
1 TGACATATGGTTACCACCCTGGTCAGATTCT-T-T-TCATTCTGATT
** * * * *
1115526 TGATGTATGGTTACCACCCTAGTTAGATTCGTTTCATT-TCGTTT
1 TGACATATGGTTACCACCCTGGTCAGATTCTTTTCATTCT-GATT
* * * ** *
1115570 TGACAAATGGTTACCACCCTGGTCAAACTCTTTTTTTTCCT-ATC
1 TGACATATGGTTACCACCCTGGTCAGATTCTTTTCATT-CTGATT
* * * *
1115614 TAACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGATT
1 TGACATATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATT
* *
1115658 TGATATATGGTGACCACCCTGGTCA
1 TGACATATGGTTACCACCCTGGTCA
1115683 AATCCACCAC
Statistics
Matches: 151, Mismatches: 41, Indels: 18
0.72 0.20 0.09
Matches are distributed among these distances:
42 2 0.01
43 10 0.07
44 130 0.86
45 6 0.04
46 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (44 bp):
TGACATATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATT
Found at i:1115527 original size:88 final size:86
Alignment explanation
Indices: 1115400--1115686 Score: 335
Period size: 88 Copynumber: 3.3 Consensus size: 86
1115390 AATTTAATGC
* * *** * *
1115400 ATGGTTACCACCTTGGTTAAATCTTCCTCTCTCCAATCTGACCTATGGTTACCACCCTGGTCAGA
1 ATGGTTACCACCCTGGTCAAATCTT-CT-TCTTTTATCTGACGTATGGTTACCACCCTGGTTAGA
1115465 TTCTTTTCATTCTGATTTGACAT
64 TTCTTTTCATTCTGATTTGACAT
* *
1115488 ATGGTTACCACCCTGGTCAAATCTATCTATCTTTTATCTGATGTATGGTTACCACCCTAGTTAGA
1 ATGGTTACCACCCTGGTCAAATCT-TCT-TCTTTTATCTGACGTATGGTTACCACCCTGGTTAGA
* * *
1115553 TTCGTTTCATT-TCGTTTTGACAA
64 TTCTTTTCATTCT-GATTTGACAT
* * *
1115576 ATGGTTACCACCCTGGTCAAACTCTT-TTTTTTCCTATCTAACGTATGGTTACCACCTTGGTTAG
1 ATGGTTACCACCCTGGTCAAA-TCTTCTTCTTT--TATCTGACGTATGGTTACCACCCTGGTTAG
*
1115640 ATTCTTTTCATTCTGATTTGATAT
63 ATTCTTTTCATTCTGATTTGACAT
*
1115664 ATGGTGACCACCCTGGTCAAATC
1 ATGGTTACCACCCTGGTCAAATC
1115687 CACCACATTC
Statistics
Matches: 170, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
86 4 0.02
87 4 0.02
88 157 0.92
89 5 0.03
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (86 bp):
ATGGTTACCACCCTGGTCAAATCTTCTTCTTTTATCTGACGTATGGTTACCACCCTGGTTAGATT
CTTTTCATTCTGATTTGACAT
Found at i:1115743 original size:249 final size:248
Alignment explanation
Indices: 1115462--1115934 Score: 565
Period size: 249 Copynumber: 1.9 Consensus size: 248
1115452 CACCCTGGTC
* *
1115462 AGATTCTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTATCTATCTTTTATCT
1 AGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTAGTCAAATCTATCTATCTTTTATCT
* ** * * *
1115527 GATGTATGGTTACCACCCTAGTTAGATTCGTTTCATT-TCGTTTTGACAAATGGTTACCACCCTG
66 AACATATGGTTACCACCCTAGTCAAATTCGTTTCATTCT-GATTTGACAAATGGTTACCACCCTG
* * * * * * * * *
1115591 GTCAAACTCTTTTTTTTCCTAT-CTAACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTG
130 GTCAAA-T-TTGTCTCTCCTATGCCAACGTATAGTTACAACCTTGGTCAAATTCTTCTCATTCTG
*
1115655 ATTTGA-TATATGGTGACCACCCTGGTCAAATCCACCACATTCCTATCTAACGTGTT
193 ATTTGACT-CATGGTGACCACCCTGGTCAAATCCACCACATTCCTATCTAACGTGTT
* * * * * *
1115711 AGATTCTTTTCATTTTGATTTGATACATGGTTACCACCCTAGTCAAATTTGTCTCTCTTTTTTCT
1 AGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTAGTCAAATCTATCTATCTTTTATCT
* ** * * *
1115776 AACATATGGTTACCACCCTGGTCAAATTTTTTTCATTCTGATTTGACATATGGTTAGCACCCTTG
66 AACATATGGTTACCACCCTAGTCAAATTCGTTTCATTCTGATTTGACAAATGGTTACCACCCTGG
* * * *
1115841 TTAAATTTGTCTCTCCTCTGCCAATGTATAGTTACAACCTTGGTCAAATTCTTCTCATTCTTATT
131 TCAAATTTGTCTCTCCTATGCCAACGTATAGTTACAACCTTGGTCAAATTCTTCTCATTCTGATT
* *
1115906 TGACTCATGGTTACCTCCCTGGTCAAATC
196 TGACTCATGGTGACCACCCTGGTCAAATC
1115935 TGCTTTTTTC
Statistics
Matches: 185, Mismatches: 36, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
247 9 0.05
248 62 0.34
249 113 0.61
250 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (248 bp):
AGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTAGTCAAATCTATCTATCTTTTATCT
AACATATGGTTACCACCCTAGTCAAATTCGTTTCATTCTGATTTGACAAATGGTTACCACCCTGG
TCAAATTTGTCTCTCCTATGCCAACGTATAGTTACAACCTTGGTCAAATTCTTCTCATTCTGATT
TGACTCATGGTGACCACCCTGGTCAAATCCACCACATTCCTATCTAACGTGTT
Found at i:1115800 original size:44 final size:46
Alignment explanation
Indices: 1115737--1115855 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 46
1115727 GATTTGATAC
*
1115737 ATGGTTACCACCCTAGTCAAATTTGTCTCTC-TT-T-TTTCTAACAT
1 ATGGTTACCACCCTAGTCAAATTTGTCTCTCATTCTGATT-TAACAT
* * *
1115781 ATGGTTACCACCCTGGTCAAATTT-T-TTTCATTCTGATTTGACAT
1 ATGGTTACCACCCTAGTCAAATTTGTCTCTCATTCTGATTTAACAT
* * *
1115825 ATGGTTAGCACCCTTGTTAAATTTGTCTCTC
1 ATGGTTACCACCCTAGTCAAATTTGTCTCTC
1115856 CTCTGCCAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
42 3 0.05
43 3 0.05
44 50 0.81
45 3 0.05
46 3 0.05
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.43
Consensus pattern (46 bp):
ATGGTTACCACCCTAGTCAAATTTGTCTCTCATTCTGATTTAACAT
Found at i:1115812 original size:161 final size:160
Alignment explanation
Indices: 1115547--1115838 Score: 383
Period size: 161 Copynumber: 1.8 Consensus size: 160
1115537 TACCACCCTA
* *
1115547 GTTAGATTCGTTTCATTTCGTTTTGACAAATGGTTACCACCCTGGTCAAACTCTTTTTTTTCCTA
1 GTTAGATTCGTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCTTTTTTTT-CTA
* * * * *
1115612 TCTAACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGATTTGATATATGGTGACCACCC
65 TCTAACATATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACATATGGTGACCACCC
1115677 TGGTCAAATCCACCACATTCCTATCTAACGT
130 TGGTCAAATCCACCACATTCCTATCTAACGT
* * * *
1115708 GTTAGATTCTTTTCATTTTGATTTGATACATGGTTACCACCCTAGTCAAA-T-TTGTCTCTCTTT
1 GTTAGATTCGTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCTT-T-T-T-TTT
* * * *
1115771 -TTTCTAACATATGGTTACCACCCTGGTCAAATTTTTTTCATTCTGATTTGACATATGGTTAGCA
62 CTATCTAACATATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACATATGGTGACCA
1115835 CCCT
127 CCCT
1115839 TGTTAAATTT
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
159 2 0.02
160 2 0.02
161 104 0.93
162 1 0.01
163 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (160 bp):
GTTAGATTCGTTTCATTTCGATTTGACAAATGGTTACCACCCTAGTCAAACTCTTTTTTTTCTAT
CTAACATATGGTTACCACCCTGGTCAAATTCTTTTCATTCTGATTTGACATATGGTGACCACCCT
GGTCAAATCCACCACATTCCTATCTAACGT
Found at i:1115901 original size:424 final size:417
Alignment explanation
Indices: 1115400--1116531 Score: 1283
Period size: 424 Copynumber: 2.7 Consensus size: 417
1115390 AATTTAATGC
* * *
1115400 ATGGTTACCACCTTGGTTAAATCTTCCTCTCT-CCAATCTGACCTATGGTTACCACCCTGGTCAG
1 ATGGTTACCACCCTGGTCAAATCTTCCT-TCTGCCAA-CTG--CTATAGTTACCACCCTGGTCAG
1115464 ATTCTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTATCTATCTTTTATCTGA
62 ATTC-TTTCATTCTGATTTGAC-TATGGTTACCACCCTGGTCAAATCT-TCTATCTTTTATCTGA
* * *
1115529 TGTATGGTTACCACCCTAGTTAGATTCGTTTCATTTCGTTTTGACAAATGGTTACCACCCTGGTC
124 TGTATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTC
** * *
1115594 AAACTCTTTTTTTTCCTATCTAACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGATTT
189 AAACTCTCCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGATTT
1115659 GATATATGGTGACCACCCTGGTCAAATCCACCACATTCCTA-TCTAACGTGTTAGATTCTTTTCA
254 GATATATGGTGACCACCCTGGTCAAATCCACC-CATTCCTAGTCTAACGTGTTAGATTCTTTTCA
* * *
1115723 TTT-TGATTTGATACATGGTTACCACCCTAG-TCAAATTTGTCTCTCTTTTTTCTAACATATGGT
318 TTTCT-ATTTGATACATGGTTACCA-CATAGATCAAATTTATCTCTC--TTGTCTAACATATGGT
* * * *
1115786 TACCACCCTGGTCAAATTTTTTTCATTCTGATTTGACA-T
379 TACCACCCTAGTCAAATTATTTCCATTCTAATTTGA-AGT
* * * * * * *
1115825 ATGGTTAGCACCCTTGTTAAATTTGTCTCTCCTCTGCCAA-TG-TATAGTTACAACCTTGGTCAA
1 ATGGTTACCACCCTGGTCAAATCT-TC-CT--TCTGCCAACTGCTATAGTTACCACCCTGGTCAG
* * * * *
1115888 ATTCTTCTCATTCTTATTTGACTCATGGTTACCTCCCTGGTCAAATCTGCT-TTTTTCCTATCTA
62 ATTCTT-TCATTCTGATTTGACT-ATGGTTACCACCCTGGTCAAATCTTCTATCTTT--TATCTG
* * * ** * *
1115952 ACGTAGGGTTACAACCCTGGTCGGATTCTTTTCATTTTGATTTAACAAATGGTTACCACCCTGGT
123 ATGTATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGT
* * * * * *
1116017 CTAACTCTCCTCTTTCTTGTTTGATGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGAAT
188 CAAACTCTCCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGATT
* * ** ** * *
1116082 TGATATATGGTGACCACCCTCGTCAAATTCACCTTTTTTTAGTCTAACGTGTTAGATTTTTTTCG
253 TGATATATGGTGACCACCCTGGTCAAATCCACCCATTCCTAGTCTAACGTGTTAGATTCTTTTCA
* * *
1116147 TTTCTATTTGATACATGGTTACCACATTGATCAAGTTTATCTCTCTTGTCTAACGTATGGTTACC
318 TTTCTATTTGATACATGGTTACCACATAGATCAAATTTATCTCTCTTGTCTAACATATGGTTACC
*
1116212 ACCCTAGTCAGATTATTTCCATTCTAATTTGAAGT
383 ACCCTAGTCAAATTATTTCCATTCTAATTTGAAGT
* * * * * *
1116247 ATGGTTACCACCCTGGTCAACTCTTCCTTTTTCCAATCTGACCTATGGTCACCACCCTAGTCAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCTTCTGCCAA-CTG--CTATAGTTACCACCCTGGTCAGA
* * *
1116312 TTCATTTCATTCTGATTTGACGTATAGTTACTACCTTGGTCAAATCTGTCTATCTTTTATCTGAT
63 TTC-TTTCATTCTGATTTGAC-TATGGTTACCACCCTGGTCAAATCT-TCTATCTTTTATCTGAT
* * **
1116377 GTATGGTTACCAACCTGGTTAGATTCTTTTCATTTCGATTTGGCAAATGGTTATGACCCTGGTCA
125 GTATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCA
* * * * * * *
1116442 AACACTCCTCTTTCCTATCTGACGTATGGTTACGACCCTAGTCAGATT-TTTTTATTCCGATTTG
190 AACTCTCCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGATTTG
*
1116506 ATATATGGTTACCACCCTGGTCAAAT
255 ATATATGGTGACCACCCTGGTCAAAT
1116532 ATACCTCTCT
Statistics
Matches: 587, Mismatches: 99, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
418 6 0.01
420 4 0.01
421 3 0.01
422 106 0.18
423 164 0.28
424 265 0.45
425 25 0.04
426 2 0.00
427 4 0.01
428 4 0.01
429 4 0.01
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (417 bp):
ATGGTTACCACCCTGGTCAAATCTTCCTTCTGCCAACTGCTATAGTTACCACCCTGGTCAGATTC
TTTCATTCTGATTTGACTATGGTTACCACCCTGGTCAAATCTTCTATCTTTTATCTGATGTATGG
TTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACAAATGGTTACCACCCTGGTCAAACTCT
CCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTTAGATTCTTTTCATTCTGATTTGATATAT
GGTGACCACCCTGGTCAAATCCACCCATTCCTAGTCTAACGTGTTAGATTCTTTTCATTTCTATT
TGATACATGGTTACCACATAGATCAAATTTATCTCTCTTGTCTAACATATGGTTACCACCCTAGT
CAAATTATTTCCATTCTAATTTGAAGT
Found at i:1115987 original size:88 final size:87
Alignment explanation
Indices: 1115713--1116017 Score: 273
Period size: 88 Copynumber: 3.5 Consensus size: 87
1115703 AACGTGTTAG
*
1115713 ATTCTTTTCATTTTGATTTGA-TACATGGTTACCACCCTAGTCAAATTTGTCTCTCTTTT--TTC
1 ATTCTTTTCATTTTGATTTGACT-CATGGTTACCACCCTGGTCAAATTTG-CT-T-TTTTCCTTC
* *
1115775 TAACATATGGTTACCACCCTGGTCAA
62 TAACGTATGGTTACAACCCTGGTCAA
* * * * * * * *
1115801 ATTTTTTTCATTCTGATTTGACAT-ATGGTTAGCACCCTTGTTAAATTTG--TCTCTCCTCTGCC
1 ATTCTTTTCATTTTGATTTGAC-TCATGGTTACCACCCTGGTCAAATTTGCTTTTTTCCT-T-CT
* * *
1115863 AATGTATAGTTACAACCTTGGTCAA
63 AACGTATGGTTACAACCCTGGTCAA
* * *
1115888 ATTCTTCTCATTCTT-ATTTGACTCATGGTTACCTCCCTGGTCAAATCTGCTTTTTTCCTATCTA
1 ATTCTTTTCATT-TTGATTTGACTCATGGTTACCACCCTGGTCAAATTTGCTTTTTTCCT-TCTA
* **
1115952 ACGTAGGGTTACAACCCTGGTCGG
64 ACGTATGGTTACAACCCTGGTCAA
* **
1115976 ATTCTTTTCATTTTGATTTAACAAATGGTTACCACCCTGGTC
1 ATTCTTTTCATTTTGATTTGACTCATGGTTACCACCCTGGTC
1116018 TAACTCTCCT
Statistics
Matches: 170, Mismatches: 36, Indels: 22
0.75 0.16 0.10
Matches are distributed among these distances:
83 2 0.01
84 1 0.01
85 1 0.01
86 2 0.01
87 60 0.35
88 96 0.56
89 7 0.04
90 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (87 bp):
ATTCTTTTCATTTTGATTTGACTCATGGTTACCACCCTGGTCAAATTTGCTTTTTTCCTTCTAAC
GTATGGTTACAACCCTGGTCAA
Found at i:1116311 original size:88 final size:88
Alignment explanation
Indices: 1116199--1117833 Score: 464
Period size: 88 Copynumber: 18.8 Consensus size: 88
1116189 CTCTTGTCTA
* *
1116199 ACGTATGGTTACCACCCTAGTCAGATTATTTCCATTCTAATTTGAAGTATGGTTACCACCCTGGT
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGATTTGAAGTATGGTTACCACCCTGGT
* *
1116264 CAACTCTTCCT-TTTTCCAATCTG
66 CAAATCTTCCTATTTT-CTATCTG
* * * * * *
1116287 ACCTATGGTCACCACCCTAGTCAGATTCA-TTTCATTCTGATTTGACGTATAGTTACTACCTTGG
1 ACGTATGGTTACCACCCTAGTCAGATT-ATTTTCATTCTGATTTGAAGTATGGTTACCACCCTGG
1116351 TCAAATCTGT-CTATCTTT-TATCTG
65 TCAAATCT-TCCTAT-TTTCTATCTG
* * * * * **
1116375 ATGTATGGTTACCAACCTGGTTAGATTCTTTTCATT-TCGATTTGGCAA--ATGGTTATGACCCT
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCT-GATTT-G-AAGTATGGTTACCACCCT
* * *
1116437 GGTCAAA-CACTCCTCTTTCCTATCTG
63 GGTCAAATC-TTCCTATTTTCTATCTG
* * *
1116463 ACGTATGGTTACGACCCTAGTCAGATT-TTTTTATTCCGATTTGATA-TATGGTTACCACCCTGG
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGATTTGA-AGTATGGTTACCACCCTGG
* * * * *
1116526 TCAAATATACCTCTCTTCTGTCTG
65 TCAAATCTTCCTATTTTCTATCTG
* * * * *
1116550 ACGTATGCTTACCACCCTGGTCAGATTGTTTTCATTCTGA-TTCAACGTATGGTTACCACCTTGG
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGATTTGAA-GTATGGTTACCACCCTGG
* *
1116614 TCAAAT-TTGCCT-TTCTCCTATCAG
65 TCAAATCTT-CCTATT-TTCTATCTG
* * * * * * * * * * * ** *
1116638 ACGTATGATTACCACCCTGGTGAAACTCTTCTCTTTCCTG-TTTGATGAATGCTTACGTCCTTGG
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATT-CTGATTTGAAGTATGGTTACCACCCTGG
* * * *
1116702 TCAAATTTTTTCC-ATTTCCGATTTG
65 TCAAA--TCTTCCTATTTTCTATCTG
* * * * * * * *
1116727 ATGTATGGTTACCACCCTAGTCAAATCTACCTCTC-TCCTG-TTTGACGTATGGTTAACACCCTA
1 ACGTATGGTTACCACCCTAGTCAGAT-TA-TTTTCATTCTGATTTGAAGTATGGTTACCACCCTG
** ** * *
1116790 GTCAAATCTAGCT-TTCCCATGTCTT
64 GTCAAATCTTCCTATTTTC-TATCTG
* * * * * *
1116815 ACATATGGTTACCACTC-AGGTTAGATTCTTTTCATTCCT-ATTTGACA-TATCGTTATCACCCT
1 ACGTATGGTTACCACCCTA-GTCAGATTATTTTCATT-CTGATTTGA-AGTATGGTTACCACCCT
* * * **
1116877 GGTCAAAT-TCACCTCTTTACCGTCTG
63 GGTCAAATCT-TCCTATTTTCTATCTG
* * * * * ** * *
1116903 ATGTATAGTTACCACCTTGGTCAGATTCTTTTCATTCTGATTT-AAACATGGTTACTACCCTAGT
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGATTTGAAGTATGGTTACCACCCTGGT
* * * * ** *
1116967 TAAAT-TTGTCTCTCTTCCCTCTA
66 CAAATCTT-CCTATTTTCTATCTG
* * * * * * * * * **
1116990 ATGTATGGTTACCACCTTGGGCAGATTCTTTTCATTTTCATTT-AACATATGGTTGCCTTCCTGG
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGATTTGAA-GTATGGTTACCACCCTGG
*
1117054 TCAAA-C-T-CTCATCTTTCTAGTTTG
65 TCAAATCTTCCT-AT-TTTCTA-TCTG
* * * * ** *
1117078 ATGTCA-GGTTACCACCCTGGTTAGATTCTTTTCATT-TCGATTTGATA-TATGGCGACCTCCCT
1 ACGT-ATGGTTACCACCCTAGTCAGATTATTTTCATTCT-GATTTGA-AGTATGGTTACCACCCT
* * * * * *
1117140 GGTCAAATCCAT-CTCTTTCCTGTTTA
63 GGTCAAAT-CTTCCTATTTTCTATCTG
* *** * * * * *
1117166 ACG--T-GTTA-GA---T--T-TTTTTCATTTTAATT-TG-----ACGCATGGTTACCATCTTGG
1 ACGTATGGTTACCACCCTAGTCAGATT-ATTTTCATTCTGATTTGAAGTATGGTTACCACCCTGG
* * *
1117215 TCAAAT-TTGTCTCTTTT-TAGTCTA
65 TCAAATCTT-CCTATTTTCTA-TCTG
* * * * *
1117239 ATGTATGGTT---A-CCTA-TCAAATTCTTTTGATTCTGACTTGAAGTATGGTTACCACCCTGGT
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGATTTGAAGTATGGTTACCACCCTGGT
* * * * * *
1117299 CAAATCTTCTTCTCTCCAATCTA
66 CAAATCTTCCTATTTTCTATCTG
* * * * * **
1117322 ACCTATGGTTACCACCTTGGTTAGATT-TATTTCATTCTGATTTGACGTACAGTTACCACCCTGG
1 ACGTATGGTTACCACCCTAGTCAGATTAT-TTTCATTCTGATTTGAAGTATGGTTACCACCCTGG
* * *
1117386 TTAAATCTGT-CTATCTTCTATCTA
65 TCAAATCT-TCCTATTTTCTATCTG
* * *
1117410 ATGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCT-ATTTGACA-AATGGTTACCACCCTG
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCA-TTCTGATTTGA-AGTATGGTTACCACCCTG
* * * *
1117473 ATC-AA-CCTCTTATTTTTCCTATTTG
64 GTCAAATCTTCCTA-TTTT-CTATCTG
* * * * * ** * * *
1117498 ACATATGGTTACGATCCTAGTCAGATTCTTTTTTATTCCAATTTGAGGAATGGTTACCACCCTAG
1 ACGTATGGTTACCACCCTAGTCAGATT-ATTTTCATTCTGATTTGAAGTATGGTTACCACCCTGG
* * * *
1117563 TCAAATCTACCTCTCTCCTATCTG
65 TCAAATCTTCCTATTTTCTATCTG
* * ** * * * * * *
1117587 ACGTATGGTTGCTACTATGGTCAAATTCA-TTTCATT-TCGAATT-AACATATGGTTACCATCTT
1 ACGTATGGTTACCACCCTAGTCAGATT-ATTTTCATTCT-GATTTGAA-GTATGGTTACCACCCT
* * * * *
1117649 GGTCAAATCTCCCT-CTCTCATGTCTA
63 GGTCAAATCTTCCTATTTTC-TATCTG
* * * *
1117675 ATGTATGGTTACCACCATGGTCAG-TTTTTTTCATTCCT-ATTT-AATGTATGGTTACCACCCTG
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATT-CTGATTTGAA-GTATGGTTACCACCCTG
* * *
1117737 GTCAAATTCAATTCC-A--TCCTGTCTA
64 GTCAAA-TC--TTCCTATTTTCTATCTG
** * * * * * *
1117762 ATATATGGTTACCACCCTGGTCAAATTCTTTTCATT-TCAGTTT-AATGTATGGTTACCTCCCAG
1 ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGA-TTTGAA-GTATGGTTACCACCCTG
1117825 GTCAAATCT
64 GTCAAATCT
1117834 ACTTGTTTTC
Statistics
Matches: 1156, Mismatches: 286, Indels: 213
0.70 0.17 0.13
Matches are distributed among these distances:
71 1 0.00
72 1 0.00
73 29 0.03
74 1 0.00
75 1 0.00
76 4 0.00
77 8 0.01
78 7 0.01
79 9 0.01
81 1 0.00
83 38 0.03
84 4 0.00
85 9 0.01
86 13 0.01
87 239 0.21
88 627 0.54
89 131 0.11
90 21 0.02
91 12 0.01
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
ACGTATGGTTACCACCCTAGTCAGATTATTTTCATTCTGATTTGAAGTATGGTTACCACCCTGGT
CAAATCTTCCTATTTTCTATCTG
Found at i:1116777 original size:44 final size:44
Alignment explanation
Indices: 1116509--1116829 Score: 172
Period size: 44 Copynumber: 7.3 Consensus size: 44
1116499 CGATTTGATA
* * *
1116509 TATGGTTACCACCCTGGTCAAATATACCTCTCTTCTGTCTGACG
1 TATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTTTGACG
* * ** * * **
1116553 TATGCTTACCACCCTGGTCAGAT-T-GTTTTCATTCTGATTCAACG
1 TATGGTTACCACCCTGGTCAAATCTACCTCTC-TCCTG-TTTGACG
* * * * * **
1116597 TATGGTTACCACCTTGGTCAAATTTGCCTTTCTCCTATCAGACG
1 TATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTTTGACG
* * * * *
1116641 TATGATTACCACCCTGGTGAAACTCT-TCTCTTTCCTGTTTGATG
1 TATGGTTACCACCCTGGTCAAA-TCTACCTCTCTCCTGTTTGACG
* * ** * * * *
1116685 AATGCTTACGTCCTTGGTCAAATTTTTTCCAT-T-TCC-GATTTGATG
1 TATGGTTACCACCCTGGTCAAA--TCTACC-TCTCTCCTG-TTTGACG
*
1116730 TATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTTTGACG
1 TATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTTTGACG
* * * * *
1116774 TATGGTTAACACCCTAGTCAAATCTAGCTTTC-CCATGTCTT-ACA
1 TATGGTTACCACCCTGGTCAAATCTACCTCTCTCC-TGT-TTGACG
1116818 TATGGTTACCAC
1 TATGGTTACCAC
1116830 TCAGGTTAGA
Statistics
Matches: 211, Mismatches: 52, Indels: 28
0.73 0.18 0.10
Matches are distributed among these distances:
42 4 0.02
43 13 0.06
44 150 0.71
45 37 0.18
46 6 0.03
47 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.37
Consensus pattern (44 bp):
TATGGTTACCACCCTGGTCAAATCTACCTCTCTCCTGTTTGACG
Found at i:1116923 original size:221 final size:214
Alignment explanation
Indices: 1116378--1116971 Score: 538
Period size: 221 Copynumber: 2.7 Consensus size: 214
1116368 TTATCTGATG
* * * * *
1116378 TATGGTTACCAACCTGGTTAGATTCTTTTCATTTCGATTTGGCAAATGGTTATGACCCTGGTCAA
1 TATGGTTACC-ACCTGGTTAGATTCTTTTCATTCCTATTTGACATAT-GTTATCACCCTGGTCAA
* * * * * *
1116443 ACACTCCTCTTTCCTATCTGACGTATGGTTACGACCCTAGTCAGATTTTTT-TATTCCGATTTGA
64 ACTCTCCTCTTTCCTGTCTGATGTAT-GTTACGACCTTGGTCAGATTTTTTCCATTCCGATTTGA
* * * *
1116507 TATATGGTTACCACCCTGGTCAAATATACCTCTCTTCTGTCTGACGTATGCTTACCACCCTGGTC
128 TATATGGTTACCACCCTAGTCAAATATACCTCTCTCCTGTCTGACGTATGCTTAACACCCTAGTC
* * *
1116572 AGATTGTTTTCATTCTGATTCAACG
193 AAATTGTTTCCATTC--ATT-AACA
* * * ** * * *
1116597 TATGGTTACCACCTTGGTCAAATTTGCCTTTC--TCCTATCAGACGTATGATTACCACCCTGGTG
1 TATGGTTACCACC-TGGTTAGA-TT-CTTTTCATTCCTATTTGACATATG-TTATCACCCTGGTC
* * * * *
1116660 AAACTCTTCTCTTTCCTGTTTGATGAATGCTTACGTCCTTGGTCAAATTTTTTCCATTTCCGATT
62 AAACTCTCCTCTTTCCTGTCTGATGTATG-TTACGACCTTGGTCAGATTTTTTCCA-TTCCGATT
* * * *
1116725 TGATGTATGGTTACCACCCTAGTCAAATCTACCTCTCTCCTGTTTGACGTATGGTTAACACCCTA
125 TGATATATGGTTACCACCCTAGTCAAATATACCTCTCTCCTGTCTGACGTATGCTTAACACCCTA
1116790 GTCAAATCTAGCTTTCCCATGTC-TT-ACA
190 GTCAAAT-T-G-TTT-CCAT-TCATTAACA
*
1116818 TATGGTTACCACTCAGGTTAGATTCTTTTCATTCCTATTTGACATATCGTTATCACCCTGGTCAA
1 TATGGTTACCAC-CTGGTTAGATTCTTTTCATTCCTATTTGACATAT-GTTATCACCCTGGTCAA
* * * *
1116883 ATTCACCTCTTTACC-GTCTGATGTATAGTTACCACCTTGGTCAGATTCTTTT-CATTCTGATTT
64 ACTCTCCTCTTT-CCTGTCTGATGTAT-GTTACGACCTTGGTCAGATT-TTTTCCATTCCGATTT
* * * *
1116946 -AAACATGGTTACTACCCTAGTTAAAT
126 GATATATGGTTACCACCCTAGTCAAAT
1116972 TTGTCTCTCT
Statistics
Matches: 298, Mismatches: 58, Indels: 38
0.76 0.15 0.10
Matches are distributed among these distances:
218 5 0.02
219 102 0.34
220 13 0.04
221 157 0.53
222 10 0.03
223 3 0.01
224 3 0.01
225 3 0.01
226 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (214 bp):
TATGGTTACCACCTGGTTAGATTCTTTTCATTCCTATTTGACATATGTTATCACCCTGGTCAAAC
TCTCCTCTTTCCTGTCTGATGTATGTTACGACCTTGGTCAGATTTTTTCCATTCCGATTTGATAT
ATGGTTACCACCCTAGTCAAATATACCTCTCTCCTGTCTGACGTATGCTTAACACCCTAGTCAAA
TTGTTTCCATTCATTAACA
Found at i:1117732 original size:43 final size:44
Alignment explanation
Indices: 1117280--1117831 Score: 171
Period size: 44 Copynumber: 12.5 Consensus size: 44
1117270 CTGACTTGAA
* * * *
1117280 GTATGGTTACCACCCTGGTCAAATCT-TCTTC-TCTCCAATCTAAC
1 GTATGGTTACCACCCTGGTCAAAT-TATTTTCAT-TCCTATTTAAT
* * * * * *
1117324 CTATGGTTACCACCTTGGTTAGATT-TATTTCATT-CTGATTTGAC
1 GTATGGTTACCACCCTGGTCAAATTAT-TTTCATTCCT-ATTTAAT
** * * * *
1117368 GTACAGTTACCACCCTGGTTAAATCTGTCTATC-TT-CTATCTAAT
1 GTATGGTTACCACCCTGGTCAAAT-TAT-TTTCATTCCTATTTAAT
* * * * * *
1117412 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCTATTTGAC
1 GTATGGTTACCACCCTGGTCAAATTATTTTCATTCCTATTTAAT
** * ** * * * *
1117456 AAATGGTTACCACCCTGATCAACCTCTTATT-TTTCCTATTTGAC
1 GTATGGTTACCACCCTGGTCAAATTATT-TTCATTCCTATTTAAT
* * * * * * * * * *
1117500 ATATGGTTACGATCCTAGTCAGATTCTTTTTTATTCCAATTTGAG
1 GTATGGTTACCACCCTGGTCAAATT-ATTTTCATTCCTATTTAAT
* * ** * * *
1117545 GAATGGTTACCACCCTAGTCAAATCTA-CCTC-TCTCCTATCTGAC
1 GTATGGTTACCACCCTGGTCAAAT-TATTTTCAT-TCCTATTTAAT
* * ** * * * *
1117589 GTATGGTTGCTACTATGGTCAAATTCA-TTTCATTTCGAATTAAC
1 GTATGGTTACCACCCTGGTCAAATT-ATTTTCATTCCTATTTAAT
* * * *** * * *
1117633 ATATGGTTACCATCTTGGTCAAATCT-CCCTC-TCTCATGTCTAAT
1 GTATGGTTACCACCCTGGTCAAAT-TATTTTCAT-TCCTATTTAAT
* * *
1117677 GTATGGTTACCACCATGGTC-AGTTTTTTTCATTCCTATTTAAT
1 GTATGGTTACCACCCTGGTCAAATTATTTTCATTCCTATTTAAT
* * * *
1117720 GTATGGTTACCACCCTGGTCAAATTCAATTCCA-TCCTGTCTAAT
1 GTATGGTTACCACCCTGGTCAAATT-ATTTTCATTCCTATTTAAT
* * *
1117764 ATATGGTTACCACCCTGGTCAAATTCTTTTCATTTC-AGTTTAAT
1 GTATGGTTACCACCCTGGTCAAATTATTTTCATTCCTA-TTTAAT
* *
1117808 GTATGGTTACCTCCCAGGTCAAAT
1 GTATGGTTACCACCCTGGTCAAAT
1117832 CTACTTGTTT
Statistics
Matches: 369, Mismatches: 116, Indels: 46
0.69 0.22 0.09
Matches are distributed among these distances:
42 4 0.01
43 45 0.12
44 270 0.73
45 45 0.12
46 5 0.01
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (44 bp):
GTATGGTTACCACCCTGGTCAAATTATTTTCATTCCTATTTAAT
Found at i:1118078 original size:44 final size:44
Alignment explanation
Indices: 1117972--1118081 Score: 166
Period size: 44 Copynumber: 2.5 Consensus size: 44
1117962 GATTTGATGC
*
1117972 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTAATGT
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTAACGT
** *
1118016 ATGGTTACCACCCAGGTCAAATCTACCTCTCTCCTGTCTAACGT
1 ATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTAACGT
**
1118060 ATGGTTAGTACCTTGGTCAAAT
1 ATGGTTACCACCTTGGTCAAAT
1118082 TCTTTTAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.34
Consensus pattern (44 bp):
ATGGTTACCACCTTGGTCAAATCTACCTCTCTCCTATCTAACGT
Found at i:1118381 original size:44 final size:45
Alignment explanation
Indices: 1118303--1118402 Score: 175
Period size: 44 Copynumber: 2.2 Consensus size: 45
1118293 TTCCGATTTG
1118303 ATGTATGGTTACCACCCTAGGTCAAATCTACCTCTCTCCTATCTA
1 ATGTATGGTTACCACCCTAGGTCAAATCTACCTCTCTCCTATCTA
*
1118348 ATGTATGGTTACCACCC-AGGTCAAATCTACCTCTCTCCTGTCTA
1 ATGTATGGTTACCACCCTAGGTCAAATCTACCTCTCTCCTATCTA
*
1118392 ACGTATGGTTA
1 ATGTATGGTTA
1118403 GTACCTTGGT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
44 36 0.68
45 17 0.32
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (45 bp):
ATGTATGGTTACCACCCTAGGTCAAATCTACCTCTCTCCTATCTA
Found at i:1118459 original size:44 final size:44
Alignment explanation
Indices: 1118392--1118637 Score: 111
Period size: 44 Copynumber: 5.6 Consensus size: 44
1118382 CTCCTGTCTA
** * *
1118392 ACGTATGGTTAGTACCTTGGTCAAATTCTTTTAATTCTGATTTG
1 ACGTATGGTTACCACCCTAGTCAAATTCTTTTAATTCTGATTTG
* * **
1118436 ACGTATGGTTACCACCCTAGTCAAATCTACTTTT-CTCCT-ATCCG
1 ACGTATGGTTACCACCCTAGTCAAAT-T-CTTTTAATTCTGATTTG
* * * * * ** * *
1118480 ACGTACGGTTACAATCCTAATCGAATTCTTTCCATTTTGATTTA
1 ACGTATGGTTACCACCCTAGTCAAATTCTTTTAATTCTGATTTG
* * * * * * * * *
1118524 ACATATGGTTACTAGCCTGGTCAAACTCCTCTATTTCT-TTTCTG
1 ACGTATGGTTACCACCCTAGTCAAATTCTTTTAATTCTGATT-TG
* * ** * **
1118568 ATGTATGGTTACCACCCTAGTTAGTTTTTTTTCTTTCTGATTTG
1 ACGTATGGTTACCACCCTAGTCAAATTCTTTTAATTCTGATTTG
** * *
1118612 ATATATAGTGACCACCCTAGTCAAAT
1 ACGTATGGTTACCACCCTAGTCAAAT
1118638 CCACCTCTTT
Statistics
Matches: 140, Mismatches: 56, Indels: 12
0.67 0.27 0.06
Matches are distributed among these distances:
42 4 0.03
43 5 0.04
44 120 0.86
45 6 0.04
46 5 0.04
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.41
Consensus pattern (44 bp):
ACGTATGGTTACCACCCTAGTCAAATTCTTTTAATTCTGATTTG
Found at i:1118817 original size:88 final size:88
Alignment explanation
Indices: 1118663--1118839 Score: 257
Period size: 88 Copynumber: 2.0 Consensus size: 88
1118653 CTAACGTGTT
* * * *
1118663 AGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCAGGTTAAAGTTGTCTCTCTCTTGTCT
1 AGATTCTTTTCATTTCGATTTGATGCATAGTTACCACCCAGGTCAAAGTTGTCTCTCTCCTATCT
*
1118728 AATGTATGGTTACCACCCTTGTC
66 AATGTATGGTTACCACCCTGGTC
* * *
1118751 AGATTCTTTTCA-TTCTGATTTGATGCATAGTTACCACCCTGGTCAAATTTGTTTCTCTCCTATC
1 AGATTCTTTTCATTTC-GATTTGATGCATAGTTACCACCCAGGTCAAAGTTGTCTCTCTCCTATC
*
1118815 TAATGTATTGTTACCACCCTGGTC
65 TAATGTATGGTTACCACCCTGGTC
1118839 A
1 A
1118840 AATTTGTCTC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 3 0.04
88 76 0.96
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.41
Consensus pattern (88 bp):
AGATTCTTTTCATTTCGATTTGATGCATAGTTACCACCCAGGTCAAAGTTGTCTCTCTCCTATCT
AATGTATGGTTACCACCCTGGTC
Found at i:1118828 original size:44 final size:44
Alignment explanation
Indices: 1118692--1118883 Score: 174
Period size: 44 Copynumber: 4.4 Consensus size: 44
1118682 TTGATGCATG
* * * * * *
1118692 GTTACCACCCAGGTTAAAGTTGTCTCTCTCTTGTCTAATGTATG
1 GTTACCACCCTGGTCAAATTTGTCTCTCTCCTATCTAATGTATT
* * * * * * *
1118736 GTTACCACCCTTGTCAGATTCT-T-T-TCATTCTGATTTGATGCATA
1 GTTACCACCCTGGTCAAATT-TGTCTCTC-TCCT-ATCTAATGTATT
*
1118780 GTTACCACCCTGGTCAAATTTGTTTCTCTCCTATCTAATGTATT
1 GTTACCACCCTGGTCAAATTTGTCTCTCTCCTATCTAATGTATT
* * *
1118824 GTTACCACCCTGGTCAAATTTGTCTCTCTCCTGTCTAACGTACT
1 GTTACCACCCTGGTCAAATTTGTCTCTCTCCTATCTAATGTATT
*
1118868 GTCACCACCCTGGTCA
1 GTTACCACCCTGGTCA
1118884 GATTATTTTT
Statistics
Matches: 118, Mismatches: 24, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
42 2 0.02
43 4 0.03
44 105 0.89
45 5 0.04
46 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.39
Consensus pattern (44 bp):
GTTACCACCCTGGTCAAATTTGTCTCTCTCCTATCTAATGTATT
Found at i:1118942 original size:132 final size:132
Alignment explanation
Indices: 1118692--1118945 Score: 316
Period size: 132 Copynumber: 1.9 Consensus size: 132
1118682 TTGATGCATG
* * * * * *
1118692 GTTACCACCCAGGTTAAAGTTGTCTCTCTCTTGTCTAATGTATGGTTACCACCCTTGTCAGATTC
1 GTTACCACCCAGGTCAAAGTTGTCTCTCTCCTGTCTAACGTATGGTCACCACCCTGGTCAGATTA
* *
1118757 TTTTCATTCTGATTTGATGCATAGTTACCACCCTGGTCAAATTTGTTTCTCTCCTATCTAATGTA
66 TTTTCATTCTGATTTGATGCATAGTTACCACCCTGGTCAAATCTGCTTCTCTCCTATCTAATGTA
1118822 TT
131 TT
* *
1118824 GTTACCACCCTGGTCAAATTTGTCTCTCTCCTGTCTAACGTACT-GTCACCACCCTGGTCAGATT
1 GTTACCACCCAGGTCAAAGTTGTCTCTCTCCTGTCTAACGTA-TGGTCACCACCCTGGTCAGATT
* * * * * *
1118888 ATTTTTATTCTGATTCT-ATGTATGGTTACCTCCTTGGTCACATCTGCCTT-TCTCCTAT
65 ATTTTCATTCTGATT-TGATGCATAGTTACCACCCTGGTCAAATCTG-CTTCTCTCCTAT
1118946 TAGACGTAAG
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
132 99 0.96
133 4 0.04
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (132 bp):
GTTACCACCCAGGTCAAAGTTGTCTCTCTCCTGTCTAACGTATGGTCACCACCCTGGTCAGATTA
TTTTCATTCTGATTTGATGCATAGTTACCACCCTGGTCAAATCTGCTTCTCTCCTATCTAATGTA
TT
Found at i:1119129 original size:44 final size:44
Alignment explanation
Indices: 1119081--1119270 Score: 141
Period size: 44 Copynumber: 4.3 Consensus size: 44
1119071 CATTTCGATT
* * *
1119081 TGATGTATGGTTACCACCCTGGTCAAATCTACCTCGCTCTTGTC
1 TGATGTATGGTTACCACCCTGGTCAAATCTACCTCACTCCTATC
** * ** *
1119125 TGATGTATGGTTACCACTGTGTTCAAATCTACCTTTCTCCTATT
1 TGATGTATGGTTACCACCCTGGTCAAATCTACCTCACTCCTATC
* * * * ** * *
1119169 TGACGTATGGTTACCACTCGGGTCAGATTCT-TTTCATTCCTATT
1 TGATGTATGGTTACCACCCTGGTCA-AATCTACCTCACTCCTATC
* * * * * *
1119213 TGACGAATGGTCACCACCCTGGTCAAAT-TCACCTCATTCTTGTC
1 TGATGTATGGTTACCACCCTGGTCAAATCT-ACCTCACTCCTATC
1119257 TGATGTATGGTTAC
1 TGATGTATGGTTAC
1119271 ATGCCCTAGT
Statistics
Matches: 112, Mismatches: 31, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 105 0.94
45 4 0.04
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.37
Consensus pattern (44 bp):
TGATGTATGGTTACCACCCTGGTCAAATCTACCTCACTCCTATC
Found at i:1119265 original size:88 final size:88
Alignment explanation
Indices: 1119173--1119526 Score: 304
Period size: 88 Copynumber: 4.0 Consensus size: 88
1119163 CCTATTTGAC
* ** *
1119173 GTATGGTTACCACTCGGGTCAGATTCTTTTCATTCCTATTTGACGA-ATGGTCACCACCCTGGTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTTGAC-ATATGGTTACCACCCTGGTC
*
1119237 AAATTCACCTCATTCTTGTCTGAT
65 AAATTCACCTCATTCTTGTCTAAT
* ** * *
1119261 GTATGGTTA-CATGCCCTAGTCCGATTCTTTTCATTCAGATTTGACACATGATTACCACCCTGGT
1 GTATGGTTACCA--CCCTAGTCAGATTCTTTTCATTCCTATTTGACATATGGTTACCACCCTGGT
* ***
1119325 TAAATTTGTCT-ATT-TCTGTCTAAT
64 CAAATTCACCTCATTCT-TGTCTAAT
* * * * *
1119349 GTATGGTTACCACCCTAGACAGATTCTTTCCATT-TTGATTTAACATATGGTTACCACCCTAGTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCT-ATTTGACATATGGTTACCACCCTGGTC
* * * * * *
1119413 AAACTCTCATCTTTCTTGTCTGAC
65 AAATTCACCTCATTCTTGTCTAAT
* * * * * * * * *
1119437 GTATGGTTACCACCCTGGTTAGATTCTTTTTATTCCAATTTGATATTTAGTGACCACCCTGTTCA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTTGACATATGGTTACCACCCTGGTCA
* *
1119502 AATCCACCTCCTTCTTGTCTAAT
66 AATTCACCTCATTCTTGTCTAAT
1119525 GT
1 GT
1119527 GCTAGATTCT
Statistics
Matches: 205, Mismatches: 52, Indels: 18
0.75 0.19 0.07
Matches are distributed among these distances:
87 49 0.24
88 105 0.51
89 51 0.25
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (88 bp):
GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCTATTTGACATATGGTTACCACCCTGGTCA
AATTCACCTCATTCTTGTCTAAT
Found at i:1119403 original size:87 final size:88
Alignment explanation
Indices: 1119249--1119452 Score: 225
Period size: 87 Copynumber: 2.3 Consensus size: 88
1119239 ATTCACCTCA
* * * *
1119249 TTCTTGTCTGATGTATGGTTA-CATGCCCTAGTCCGATTCTTTTCATTCAGATTTGACACATGAT
1 TTCTTGTCTGATGTATGGTTACCA--CCCTAGACAGATTCTTTCCATTCAGATTTAACACATGAT
* * * *
1119313 TACCACCCTGGTTAAATTTGTC-TAT
64 TACCACCCTAGTCAAA-CTCTCATAT
* ** * *
1119338 TTC-TGTCTAATGTATGGTTACCACCCTAGACAGATTCTTTCCATTTTGATTTAACATATGGTTA
1 TTCTTGTCTGATGTATGGTTACCACCCTAGACAGATTCTTTCCATTCAGATTTAACACATGATTA
*
1119402 CCACCCTAGTCAAACTCTCATCT
66 CCACCCTAGTCAAACTCTCATAT
*
1119425 TTCTTGTCTGACGTATGGTTACCACCCT
1 TTCTTGTCTGATGTATGGTTACCACCCT
1119453 GGTTAGATTC
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
86 3 0.03
87 50 0.52
88 38 0.40
89 5 0.05
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
TTCTTGTCTGATGTATGGTTACCACCCTAGACAGATTCTTTCCATTCAGATTTAACACATGATTA
CCACCCTAGTCAAACTCTCATAT
Found at i:1119743 original size:248 final size:248
Alignment explanation
Indices: 1119283--1119752 Score: 579
Period size: 248 Copynumber: 1.9 Consensus size: 248
1119273 GCCCTAGTCC
* * * * *
1119283 GATTCTTTTCATTCAGATTTGACACATGATTACCACCCTGGTTAAATTTGTCTATTTCTGTCTAA
1 GATTCTTTTCATTCAGATTTGACACATGATTACCACCATAGTCAAATTTGTCTATCTCTATCTAA
* * *
1119348 TGTATGGTTACCACCCTAGACAGATTCTTTCCATTTTGATTTAACATATGGTTACCACCCTAGTC
66 TGTATCGTTACCACCCTAGACAGATTCTTTCCATTCTAATTTAACATATGGTTACCACCCTAGTC
* * *
1119413 AAACTCTCATCTTTCTTGTCTGACGTATGGTTACCACCCTGGTTAGATTCTTTTTATTCCAATTT
131 AAACTCTCATCTTTCTTCTCTGACCTATGGTTACCACCCTGGTTAGATTCTTTTCATTCCAATTT
* * *
1119478 GATATTTAGTGACCACCCTGTTCAAATCCACCTCCTTCTTGTCTAATGTGCTA
196 GACATATAGTGACCACCCTGATCAAATCCACCTCCTTCTTGTCTAATGTGCTA
* * *
1119531 GATTCTTTTCATTTC-GATTTGATACATGGTTACCACCATAGTCAAATTTGTCTCTCTCTTATCT
1 GATTCTTTTCA-TTCAGATTTGACACATGATTACCACCATAGTCAAATTTGTCTATCTC-TATCT
* * * * * * * *
1119595 ATTGTATCGTTACCATCCTAGTCATATTCTTTTCATTCTAATTTGACGTATGGTTACC-CCCTGG
64 AATGTATCGTTACCACCCTAGACAGATTCTTTCCATTCTAATTTAACATATGGTTACCACCCTAG
* * * **
1119659 TCAAA-TCTTCCTCTTTCTTACT-TGACCTATGGTTTCCACCTTGGTTAGATTCTTTTCATTCTG
129 TCAAACTC-TCATCTTTCTT-CTCTGACCTATGGTTACCACCCTGGTTAGATTCTTTTCATTCCA
* * *
1119722 ATTTGACGTATGGTTACCACCCTGATCAAAT
192 ATTTGACATATAGTGACCACCCTGATCAAAT
1119753 TTGTCTCTCT
Statistics
Matches: 185, Mismatches: 33, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
247 2 0.01
248 127 0.69
249 56 0.30
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.42
Consensus pattern (248 bp):
GATTCTTTTCATTCAGATTTGACACATGATTACCACCATAGTCAAATTTGTCTATCTCTATCTAA
TGTATCGTTACCACCCTAGACAGATTCTTTCCATTCTAATTTAACATATGGTTACCACCCTAGTC
AAACTCTCATCTTTCTTCTCTGACCTATGGTTACCACCCTGGTTAGATTCTTTTCATTCCAATTT
GACATATAGTGACCACCCTGATCAAATCCACCTCCTTCTTGTCTAATGTGCTA
Found at i:1119813 original size:88 final size:89
Alignment explanation
Indices: 1119530--1119881 Score: 307
Period size: 88 Copynumber: 4.0 Consensus size: 89
1119520 CTAATGTGCT
* *
1119530 AGATTCTTTTCATT-TCGATTTGATACATGGTTACCACCAT-AGTCAAATTTGTCTCTC-TCTTA
1 AGATTCTTTTCATTCT-GATTTGACACATGGTTACCACCCTGA-TCAAATTTGTCTCTCTTCTTA
* * * *
1119592 TCT-ATTGTATCGTTACCATCCTAGTC
64 TCTGA-TGCATGGTTACCACCCTGGTC
* * ** * *
1119618 ATATTCTTTTCATTCTAATTTGACGTATGGTTACC-CCCTGGTCAAATCT-TC-CTCTTTCTTA-
1 AGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTGATCAAATTTGTCTCTC-TTCTTAT
* * * *
1119679 CTTGA-CCTATGGTTTCCACCTTGGTT
65 C-TGATGC-ATGGTTACCACCCTGGTC
** *
1119705 AGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTGATCAAATTTGTCTCTCTTC-TATG
1 AGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTGATCAAATTTGTCTCTCTTCTTATC
*
1119769 TGATGCATGATTACCACCCTGGTC
66 TGATGCATGGTTACCACCCTGGTC
* * *
1119793 AGATTTTTTTCATT-TCGATTTGACACATGATTACCACCCTTG-TCAAATTTATCTCTCTTC-TA
1 AGATTCTTTTCATTCT-GATTTGACACATGGTTACCACCC-TGATCAAATTTGTCTCTCTTCTTA
* * *
1119855 TCTAACGTATGGTTACCACCCTGGTC
64 TCTGATGCATGGTTACCACCCTGGTC
1119881 A
1 A
1119882 AATCTACTTT
Statistics
Matches: 214, Mismatches: 36, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
85 3 0.01
86 3 0.01
87 62 0.29
88 134 0.63
89 9 0.04
90 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (89 bp):
AGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTGATCAAATTTGTCTCTCTTCTTATC
TGATGCATGGTTACCACCCTGGTC
Found at i:1119945 original size:132 final size:130
Alignment explanation
Indices: 1119779--1120023 Score: 305
Period size: 132 Copynumber: 1.9 Consensus size: 130
1119769 TGATGCATGA
* * * * * **
1119779 TTACCACCCTGGTCAGATTTTTTTCATTTCGATTTGACACATGATTACCACCCTTGTCAAATTTA
1 TTACAACCCTAGTCAGATTCTTTTCATTTCGATTTAACACATGATTACCACCCTGGTC-AAGCTA
*
1119844 T-CTCTCTTC-TATCTAACGTATGGTTACCACCCTGGTCAAATCTACTTTTCTCCTATCTAACAT
65 TCCTCT-TTCTTATCAAACGTATGGTTACCACCCTGGTCAAAT-T-CTTTTCTCCTATCTAACAT
1119907 ATTG
127 ATTG
* * * * *
1119911 TTACAACCCTAGTCGGATTCTTTTCATTTTGATTTAACATATGGTTACCACCCTGGTCAAGCTCT
1 TTACAACCCTAGTCAGATTCTTTTCATTTCGATTTAACACATGATTACCACCCTGGTCAAGCTAT
* *
1119976 CCTCTTTCTTATCAAACGTATGGTTTCCACCTTGGTCAAATTCTTTTC
66 CCTCTTTCTTATCAAACGTATGGTTACCACCCTGGTCAAATTCTTTTC
1120024 ATTCTGGTTT
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
130 6 0.06
131 8 0.08
132 82 0.85
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.40
Consensus pattern (130 bp):
TTACAACCCTAGTCAGATTCTTTTCATTTCGATTTAACACATGATTACCACCCTGGTCAAGCTAT
CCTCTTTCTTATCAAACGTATGGTTACCACCCTGGTCAAATTCTTTTCTCCTATCTAACATATTG
Found at i:1119957 original size:88 final size:89
Alignment explanation
Indices: 1119857--1120319 Score: 309
Period size: 88 Copynumber: 5.3 Consensus size: 89
1119847 CTCTTCTATC
* * *
1119857 TAACGTATGGTTACCACCCTGGTCAAATCTACT-TTTCTCCTATCTAACATATTGTTACAACCCT
1 TAACATATGGTTACCACCCTGGTCAAATCTACTCTTTCTCCTATCTAACGTATGGTTACAACCCT
** *
1119921 AGTCGGATTCTTTTCATTTTGATT
66 AGTCAAATTCTTTTCATTCTGATT
* * * * * *
1119945 TAACATATGGTTACCACCCTGGTCAAGCTCTCCTCTTTCT--TATCAAACGTATGGTTTCCACCT
1 TAACATATGGTTACCACCCTGGTCAA-ATCTACTCTTTCTCCTATCTAACGTATGGTTACAACCC
* *
1120008 TGGTCAAATTCTTTTCATTCTGGTT
65 TAGTCAAATTCTTTTCATTCTGATT
* * * ** * * * * * *
1120033 TGATATATGGTGACCACCCTGGTCAAAT-TTGTCTCTCTCTTGTCTAATGTATGGTTACCAGCCT
1 TAACATATGGTTACCACCCTGGTCAAATCTACTCTTTCTCCTATCTAACGTATGGTTACAACCCT
* * *
1120097 GGTCAGATTTTTTTCATT-TGGATT
66 AGTCAAATTCTTTTCATTCT-GATT
* * * ** * * * * ** *
1120121 TGACACATGGTTACCACCCTGGTGAAAT-TTGTGTCTCTTCTATCTAATGCGTGGTTAC--CACT
1 TAACATATGGTTACCACCCTGGTCAAATCTACTCTTTCTCCTATCTAACGTATGGTTACAACCCT
1120183 AGTGTCAAATTCTTCTT-ATTCTGATT
66 A--GTCAAATTCTT-TTCATTCTGATT
* * * * * *
1120209 TTACGTATGGTTACCACCCTGTTCAAATCTA-TTTTTCTCCTATCTGACGTATGGTTACAACCTT
1 TAACATATGGTTACCACCCTGGTCAAATCTACTCTTTCTCCTATCTAACGTATGGTTACAACCCT
* * ** * *
1120273 GGTCAAACTCTCATCTTTCTTG-TC
66 AGTCAAATTCTTTTCATTC-TGATT
* *
1120297 TGACGTATGGTTACCACCCTGGT
1 TAACATATGGTTACCACCCTGGT
1120320 TAGATTTTTT
Statistics
Matches: 293, Mismatches: 68, Indels: 28
0.75 0.17 0.07
Matches are distributed among these distances:
86 9 0.03
87 3 0.01
88 263 0.90
89 11 0.04
90 7 0.02
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (89 bp):
TAACATATGGTTACCACCCTGGTCAAATCTACTCTTTCTCCTATCTAACGTATGGTTACAACCCT
AGTCAAATTCTTTTCATTCTGATT
Found at i:1120059 original size:44 final size:43
Alignment explanation
Indices: 1119603--1120150 Score: 139
Period size: 44 Copynumber: 12.5 Consensus size: 43
1119593 CTATTGTATC
* * * ** **
1119603 GTTACCATCCTAGTCATATTCTTTTCATTCTAATTTGACGTATG
1 GTTACCACCCTGGTCAAATT-TTTTCATTCTGGTTTGATATATG
** * *** **
1119647 GTTACC-CCCTGGTCAAATCTTCCTCTTTCTTACTTGACCTATG
1 GTTACCACCCTGGTCAAAT-TTTTTCATTCTGGTTTGATATATG
* * * * * **
1119690 GTTTCCACCTTGGTTAGATTCTTTTCATTCTGATTTGACGTATG
1 GTTACCACCCTGGTCAAATT-TTTTCATTCTGGTTTGATATATG
* * * **
1119734 GTTACCACCCTGATCAAATTTGTCTCTC-TTCT-ATGTGATGCATG
1 GTTACCACCCTGGTCAAATTT-T-T-TCATTCTGGTTTGATATATG
* * * * *
1119778 ATTACCACCCTGGTCAGATTTTTTTCATT-TCGATTTGACACATG
1 GTTACCACCCTGGTCA-AATTTTTTCATTCT-GGTTTGATATATG
* * * * * **
1119822 ATTACCACCCTTGTCAAATTTATCTCTC-TTCT-ATCTAACGTATG
1 GTTACCACCCTGGTCAAATTT-T-T-TCATTCTGGTTTGATATATG
* * * * * *
1119866 GTTACCACCCTGGTCAAATCTACTTTTC-TCCT-ATCTAACATATT
1 GTTACCACCCTGGTCAAAT-T--TTTTCATTCTGGTTTGATATATG
* * ** * * * *
1119910 GTTACAACCCTAGTCGGATTCTTTTCATTTTGATTTAACATATG
1 GTTACCACCCTGGTCAAATT-TTTTCATTCTGGTTTGATATATG
* * ** * * * *
1119954 GTTACCACCCTGGTCAAGCTCTCCTCTTTCT--TATCAAACGTATG
1 GTTACCACCCTGGTCAA-ATTTTTTCATTCTGGTTTGATA--TATG
* *
1119998 GTTTCCACCTTGGTCAAATTCTTTTCATTCTGGTTTGATATATG
1 GTTACCACCCTGGTCAAATT-TTTTCATTCTGGTTTGATATATG
* * * * * *
1120042 GTGACCACCCTGGTCAAATTTGTCTC-TCTCTTGTCTAATGTATG
1 GTTACCACCCTGGTCAAATTT-TTTCAT-TCTGGTTTGATATATG
* * * *
1120086 GTTACCAGCCTGGTCAGATTTTTTTCATT-TGGATTTGACACATG
1 GTTACCACCCTGGTCA-AATTTTTTCATTCTGG-TTTGATATATG
*
1120130 GTTACCACCCTGGTGAAATTT
1 GTTACCACCCTGGTCAAATTT
1120151 GTGTCTCTTC
Statistics
Matches: 378, Mismatches: 96, Indels: 61
0.71 0.18 0.11
Matches are distributed among these distances:
42 13 0.03
43 52 0.14
44 282 0.75
45 20 0.05
46 10 0.03
47 1 0.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (43 bp):
GTTACCACCCTGGTCAAATTTTTTCATTCTGGTTTGATATATG
Found at i:1120259 original size:44 final size:44
Alignment explanation
Indices: 1120211--1120319 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
1120201 TTCTGATTTT
* *
1120211 ACGTATGGTTACCACCCTGTTCAAA-TCT-ATTTTTCTCCTATCTG
1 ACGTATGGTTACCACCCTGGTCAAACTCTCATCTTTCT--TATCTG
* * *
1120255 ACGTATGGTTACAACCTTGGTCAAACTCTCATCTTTCTTGTCTG
1 ACGTATGGTTACCACCCTGGTCAAACTCTCATCTTTCTTATCTG
1120299 ACGTATGGTTACCACCCTGGT
1 ACGTATGGTTACCACCCTGGT
1120320 TAGATTTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 46 0.82
45 3 0.05
46 7 0.12
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.38
Consensus pattern (44 bp):
ACGTATGGTTACCACCCTGGTCAAACTCTCATCTTTCTTATCTG
Found at i:1120263 original size:176 final size:176
Alignment explanation
Indices: 1119859--1120270 Score: 436
Period size: 176 Copynumber: 2.3 Consensus size: 176
1119849 CTTCTATCTA
* * *
1119859 ACGTATGGTTACCACCCTGGTCAAATCTACTTTTCTCCTATCTAACATATTGTTACAACCCTAGT
1 ACGTATGGTTACCACCCTGGTCAAATCTATTTTTCTCCTATCTAACGTATGGTTACAACCCTAGT
* * * *
1119924 CGGATTCTTTTCATTTTGATTTAACATATGGTTACCACCCTGGTCAAGCTCTCCTCTTTCTTATC
66 CAGATTCTTTTCATTTGGATTTAACACATGGTTACCACCCTGGTAAAGCTCTCCTCTTTCTTATC
* * * *
1119989 AAACGTATGGTTTCCACCTTGGTCAAATTCTTTTCATTCTGGTTTG
131 AAACGCATGGTTACCACCTAGGTCAAATTCTTTTCATTCTGATTTG
** * * * * * * * * * * *
1120035 ATATATGGTGACCACCCTGGTCAAATTTGTCTCTCTCTTGTCTAATGTATGGTTACCAGCCTGGT
1 ACGTATGGTTACCACCCTGGTCAAATCTATTTTTCTCCTATCTAACGTATGGTTACAACCCTAGT
* * ** * *
1120100 CAGATTTTTTTCATTTGGATTTGACACATGGTTACCACCCTGGTGAAATTTGT-GTCTCTTC-TA
66 CAGATTCTTTTCATTTGGATTTAACACATGGTTACCACCCTGGT-AAAGCTCTCCTCT-TTCTTA
* * * *
1120163 TCTAATGCGTGGTTACCA-CTAGTGTCAAATTCTTCTT-ATTCTGATTTT
129 TCAAACGCATGGTTACCACCTAG-GTCAAATTCTT-TTCATTCTGATTTG
* *
1120211 ACGTATGGTTACCACCCTGTTCAAATCTATTTTTCTCCTATCTGACGTATGGTTACAACC
1 ACGTATGGTTACCACCCTGGTCAAATCTATTTTTCTCCTATCTAACGTATGGTTACAACC
1120271 TTGGTCAAAC
Statistics
Matches: 184, Mismatches: 48, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
175 3 0.02
176 172 0.93
177 9 0.05
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (176 bp):
ACGTATGGTTACCACCCTGGTCAAATCTATTTTTCTCCTATCTAACGTATGGTTACAACCCTAGT
CAGATTCTTTTCATTTGGATTTAACACATGGTTACCACCCTGGTAAAGCTCTCCTCTTTCTTATC
AAACGCATGGTTACCACCTAGGTCAAATTCTTTTCATTCTGATTTG
Found at i:1120264 original size:308 final size:305
Alignment explanation
Indices: 1119611--1120367 Score: 839
Period size: 308 Copynumber: 2.5 Consensus size: 305
1119601 TCGTTACCAT
* * * * *
1119611 CCTAGTCATATTCTTTTCATTCTAATTTGACGTATGGTTACC-CCCTGGTCAAATCTTCCTCTTT
1 CCTAGTCAAATTCTTTTCATCCTGATCTGACGTATGGTTACCACCCTGGTCAACTC-TCCTCTTT
* ** *
1119675 CTTA-CTTGACCTATGGTTTCCACCTTGGTTAGATTCTTTTCATTCTGATTTGACGTATGGTTAC
65 CTTATC-TGACGTATGGTTTCCACCTTGGTTAGATTCTTTTCATTCTGATTTGATATATGGTGAC
* *
1119739 CACCCTGATCAAATTTGTCTCTCTTCTATGTGATGCATGATTACCACCCTGGTCAGATTTTTTTC
129 CACCCTGGTCAAATTTGTCTCTCTTCTATGTAATGCATGATTACCACCCTGGTCAGATTTTTTTC
* *
1119804 ATTTCGATTTGACACATGATTACCACCCTTGTCAAATTTATCTCTCTTCTATCTAACGTATGGTT
194 ATTTCGATTTGACACATGATTACCACCCTGGTCAAATTTATCTCTCTTCTATCTAACGCATGGTT
* *
1119869 ACCACCCTGGTCAAATCTACTTTTCTCCTATCTAACATATTGTTACAAC
259 ACCA-CCTGGTCAAATCTACTTTTCT-CGATCTAACATATGGTTACAAC
** ** * * *
1119918 CCTAGTCGGATTCTTTTCATTTTGATTTAACATATGGTTACCACCCTGGTCAAGCTCTCCTCTTT
1 CCTAGTCAAATTCTTTTCATCCTGATCTGACGTATGGTTACCACCCTGGTCAA-CTCTCCTCTTT
** * * *
1119983 CTTATCAAACGTATGGTTTCCACCTTGGTCAAATTCTTTTCATTCTGGTTTGATATATGGTGACC
65 CTTATCTGACGTATGGTTTCCACCTTGGTTAGATTCTTTTCATTCTGATTTGATATATGGTGACC
* * *
1120048 ACCCTGGTCAAATTTGTCTCTC-TCT-TGTCTAATGTATGGTTACCAGCCTGGTCAGATTTTTTT
130 ACCCTGGTCAAATTTGTCTCTCTTCTATG--TAATGCATGATTACCACCCTGGTCAGATTTTTTT
* * * * * * *
1120111 CATTTGGATTTGACACATGGTTACCACCCTGGTGAAATTTGTGTCTCTTCTATCTAATGCGTGGT
193 CATTTCGATTTGACACATGATTACCACCCTGGTCAAATTTATCTCTCTTCTATCTAACGCATGGT
* * * * *
1120176 TACCA-CTAGTGTCAAATTCTTCTTATTCT-GATTTTACGTATGGTTACCAC
258 TACCACCT-G-GTCAAA-TCTACTT-TTCTCGATCTAACATATGGTTACAAC
* * * *
1120226 CCT-GTTCAAATCTATTTTTC-TCCT-ATCTGACGTATGGTTACAACCTTGGTCAAACTCTCATC
1 CCTAG-TCAAAT-T-CTTTTCATCCTGATCTGACGTATGGTTACCACCCTGGTC-AACTCTCCTC
* * * * * *
1120288 TTTCTTGTCTGACGTATGGTTACCACCCTGGTTAGATTTTTTTGATTCTGATTTGATATACGGTG
62 TTTCTTATCTGACGTATGGTTTCCACCTTGGTTAGATTCTTTTCATTCTGATTTGATATATGGTG
*
1120353 ACCACCCTAGTCAAA
127 ACCACCCTGGTCAAA
1120368 CCCACCACCT
Statistics
Matches: 377, Mismatches: 60, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
306 4 0.01
307 41 0.11
308 309 0.82
309 14 0.04
310 9 0.02
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (305 bp):
CCTAGTCAAATTCTTTTCATCCTGATCTGACGTATGGTTACCACCCTGGTCAACTCTCCTCTTTC
TTATCTGACGTATGGTTTCCACCTTGGTTAGATTCTTTTCATTCTGATTTGATATATGGTGACCA
CCCTGGTCAAATTTGTCTCTCTTCTATGTAATGCATGATTACCACCCTGGTCAGATTTTTTTCAT
TTCGATTTGACACATGATTACCACCCTGGTCAAATTTATCTCTCTTCTATCTAACGCATGGTTAC
CACCTGGTCAAATCTACTTTTCTCGATCTAACATATGGTTACAAC
Found at i:1121312 original size:176 final size:176
Alignment explanation
Indices: 1120975--1121426 Score: 407
Period size: 176 Copynumber: 2.6 Consensus size: 176
1120965 GATTTGGCGT
* * * *
1120975 ACCTAGTCAAA-TCTTCTTCTCTCCTATCTAACCTATGGTTA-CACCCTAGTCAGATTCTTTTCA
1 ACCTAGTCAAACTC-TCATCTTTCTTGTCTAACCTATGGTTACCACCCTAGTCAGATTCTTTTCA
* * * * * * *
1121038 TTCTGATTTGACATATGGTTAGCACCCTGGTCAAATCTGTCTCTCTTCTATCTGATGTACGGTTA
65 TTCTGATTTAACACATGGTTACCACCCTAGTCAAATCTCTCTCTCTCCTATCTGACGTACGGTTA
* ** * *
1121103 CCAACTTGGTCAGATTTTTTTCATTTCGATTTAAGACATGGTTACCA
130 CCAACCTGGTCAGATGCTTTTCATTTCGATTTAACACATAGTTACCA
** * * * * *
1121150 ATTTAGTCAAATTTGTCAT-TCTT-TTGTCTAACGTATGGTTACCACCCTAGTCAAATTCTTTTT
1 ACCTAGTCAAA-CTCTCATCT-TTCTTGTCTAACCTATGGTTACCACCCTAGTCAGATTCTTTTC
* * ** * *
1121213 GTTCTGATTTAACGCATGGTTACCACCCTAGTTTAATCTACTTTC-CTCCTATCTGACGTATGGT
64 ATTCTGATTTAACACATGGTTACCACCCTAGTCAAATCT-CTCTCTCTCCTATCTGACGTACGGT
** *
1121277 TA-CAACCCTGGTTGGATGCTTTTCACTTT-GATTTAACATATAGTTACCA
128 TACCAA-CCTGGTCAGATGCTTTTCA-TTTCGATTTAACACATAGTTACCA
* * * *
1121326 CCCTAGTCAAACTCTCATCTTTCTTGTCTAACTTATGGTTACCACCCTGGTCAGTTTCTTTTCAT
1 ACCTAGTCAAACTCTCATCTTTCTTGTCTAACCTATGGTTACCACCCTAGTCAGATTCTTTTCAT
* * * * **
1121391 T-TCGATTCAATATATGGTGACCACCCCGGTCAAATC
66 TCT-GATTTAACACATGGTTACCACCCTAGTCAAATC
1121427 CACCTCCTTC
Statistics
Matches: 216, Mismatches: 51, Indels: 19
0.76 0.18 0.07
Matches are distributed among these distances:
175 36 0.17
176 173 0.80
177 7 0.03
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (176 bp):
ACCTAGTCAAACTCTCATCTTTCTTGTCTAACCTATGGTTACCACCCTAGTCAGATTCTTTTCAT
TCTGATTTAACACATGGTTACCACCCTAGTCAAATCTCTCTCTCTCCTATCTGACGTACGGTTAC
CAACCTGGTCAGATGCTTTTCATTTCGATTTAACACATAGTTACCA
Found at i:1121387 original size:88 final size:89
Alignment explanation
Indices: 1120976--1121447 Score: 351
Period size: 88 Copynumber: 5.4 Consensus size: 89
1120966 ATTTGGCGTA
* * * *
1120976 CCTAGTCAAATCT-TCTTCTC-TCCTATCTAACCTATGGTTA-CACCCTAGTCAGATTCTTTTCA
1 CCTAGTCAAATCTCTCATCTCTTCTTATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCA
* *
1121038 TTCTGATTTGACATATGGTTAGCAC
66 TT-TGATTTAACATATGGTTACCAC
* * * * * * * *
1121063 CCTGGTCAAATCTGTC-TCTCTTC-TATCTGATGTACGGTTACCAACTTGGTCAGATTTTTTTCA
1 CCTAGTCAAATCTCTCATCTCTTCTTATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCA
* * *
1121126 TTTCGATTTAAGACATGGTTACCAA
66 TTT-GATTTAACATATGGTTACCAC
** * * * * * **
1121151 TTTAGTCAAATTTGTCAT-TCTT-TTGTCTAACGTATGGTTACCACCCTAGTCAAATTCTTTTTG
1 CCTAGTCAAATCTCTCATCTCTTCTTATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCA
**
1121214 TTCTGATTTAACGCATGGTTACCAC
66 TT-TGATTTAACATATGGTTACCAC
** * * * * ** *
1121239 CCTAGTTTAATCTACT--T-TCCTCCTATCTGACGTATGGTTACAACCCTGGTTGGATGCTTTTC
1 CCTAGTCAAATCT-CTCATCTCTTCTTATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTC
*
1121301 ACTTTGATTTAACATATAGTTACCAC
65 A-TTTGATTTAACATATGGTTACCAC
* * *
1121327 CCTAGTCAAA-CTCTCATCT-TTCTTGTCTAACTTATGGTTACCACCCTGGTCAGTTTCTTTTCA
1 CCTAGTCAAATCTCTCATCTCTTCTTATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCA
* * *
1121390 TTTCGATTCAATATATGGTGACCAC
66 TTT-GATTTAACATATGGTTACCAC
** * * *
1121415 CCCGGTCAAATC-CACCTC-CTTCCTATCTAACGT
1 CCTAGTCAAATCTCTCATCTCTTCTTATCTAACGT
1121448 GTTAGATTCT
Statistics
Matches: 293, Mismatches: 76, Indels: 31
0.73 0.19 0.08
Matches are distributed among these distances:
86 2 0.01
87 39 0.13
88 245 0.84
89 7 0.02
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.39
Consensus pattern (89 bp):
CCTAGTCAAATCTCTCATCTCTTCTTATCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCA
TTTGATTTAACATATGGTTACCAC
Found at i:1121540 original size:44 final size:44
Alignment explanation
Indices: 1121477--1121582 Score: 149
Period size: 44 Copynumber: 2.4 Consensus size: 44
1121467 GATTTGATGC
* * * **
1121477 ATGGTTAGCACCATAGTCAAATTTACCTCTCTCTTGTCTAACGT
1 ATGGTTACCACCCTGGTCAAATTTACCTCTCTCTTCCCTAACGT
**
1121521 ATGGTTACCACCCTGGTCAAATTTGTCTCTCTCTTCCCTAACGT
1 ATGGTTACCACCCTGGTCAAATTTACCTCTCTCTTCCCTAACGT
1121565 ATGGTTACCACCCTGGTC
1 ATGGTTACCACCCTGGTC
1121583 TGATTTTTTC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (44 bp):
ATGGTTACCACCCTGGTCAAATTTACCTCTCTCTTCCCTAACGT
Found at i:1121692 original size:88 final size:88
Alignment explanation
Indices: 1121523--1121761 Score: 200
Period size: 88 Copynumber: 2.7 Consensus size: 88
1121513 TCTAACGTAT
* * ** * * **
1121523 GGTTACCACCCTGGTCAAATTTGTC-TCTCTCTTCCCTAACGTATGGTTACCACCCTGGTCTGAT
1 GGTTACCACCCTAGTCAAATTTG-CGTCTCTCCTATCTAACGTATGGTTACAACCCTAGTCAAAT
* * *
1121587 T--TTTTCCATT-TCGATTTGACACAT
65 TCCTCTT--ATTCT-AATTTGACACAA
** * * * * *
1121611 GGTTACCACTGTGGTTAAGTTTGCGTCTCTTCTATCTAACGTATGGTTACCACCCGT-GTCAAAT
1 GGTTACCACCCTAGTCAAATTTGCGTCTCTCCTATCTAACGTATGGTTACAACCC-TAGTCAAAT
*
1121675 TCCTCTTATTCTAATTTGACATAA
65 TCCTCTTATTCTAATTTGACACAA
* * *
1121699 GGTTACCACCCTAGTCAAATTTGCTTTTCTCCTATCTGACGTATGGTTACAACCCTAGTCAAA
1 GGTTACCACCCTAGTCAAATTTGCGTCTCTCCTATCTAACGTATGGTTACAACCCTAGTCAAA
1121762 CTCTCCTTTT
Statistics
Matches: 121, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
87 2 0.02
88 114 0.94
89 2 0.02
90 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (88 bp):
GGTTACCACCCTAGTCAAATTTGCGTCTCTCCTATCTAACGTATGGTTACAACCCTAGTCAAATT
CCTCTTATTCTAATTTGACACAA
Found at i:1121747 original size:44 final size:44
Alignment explanation
Indices: 1121477--1121761 Score: 143
Period size: 44 Copynumber: 6.5 Consensus size: 44
1121467 GATTTGATGC
* * * * * *
1121477 ATGGTTAGCACCATAGTCAAATTTACCTCTCTCTTGTCTAACGT
1 ATGGTTACCACCCTAGTCAAATTTGCTTCTCTCCTATCTAACGT
* * **
1121521 ATGGTTACCACCCTGGTCAAATTTG-TCTCTCTCTTCCCTAACGT
1 ATGGTTACCACCCTAGTCAAATTTGCT-TCTCTCCTATCTAACGT
* ** * * * * * **
1121565 ATGGTTACCACCCTGGTCTGATTT-TTTC-CATTTCGATTTGACAC
1 ATGGTTACCACCCTAGTCAAATTTGCTTCTC--TCCTATCTAACGT
** * * * * *
1121609 ATGGTTACCACTGTGGTTAAGTTTGCGTCTCTTCTATCTAACGT
1 ATGGTTACCACCCTAGTCAAATTTGCTTCTCTCCTATCTAACGT
* * * *
1121653 ATGGTTACCACCCGT-GTCAAATTCCT-CTTAT-T-CTAATTTGACAT
1 ATGGTTACCACCC-TAGTCAAATT--TGCTTCTCTCCT-ATCTAACGT
* * *
1121697 AAGGTTACCACCCTAGTCAAATTTGCTTTTCTCCTATCTGACGT
1 ATGGTTACCACCCTAGTCAAATTTGCTTCTCTCCTATCTAACGT
*
1121741 ATGGTTACAACCCTAGTCAAA
1 ATGGTTACCACCCTAGTCAAA
1121762 CTCTCCTTTT
Statistics
Matches: 181, Mismatches: 46, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
42 2 0.01
43 9 0.05
44 160 0.88
45 8 0.04
46 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (44 bp):
ATGGTTACCACCCTAGTCAAATTTGCTTCTCTCCTATCTAACGT
Found at i:1121791 original size:44 final size:44
Alignment explanation
Indices: 1121693--1121792 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 44
1121683 TTCTAATTTG
* * * *
1121693 ACATAAGGTTACCACCCTAGTCAAATTTGCTTTTCTCCTATCTG
1 ACATAAGGTTACAACCCTAGTCAAATCTCCTTTTCTCCTATCTA
* * * *
1121737 ACGTATGGTTACAACCCTAGTCAAACTCTCCTTTT-TCTTGTCTA
1 ACATAAGGTTACAACCCTAGTCAAA-TCTCCTTTTCTCCTATCTA
*
1121781 ACATACGGTTAC
1 ACATAAGGTTAC
1121793 CACCTTGGTC
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
44 38 0.84
45 7 0.16
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (44 bp):
ACATAAGGTTACAACCCTAGTCAAATCTCCTTTTCTCCTATCTA
Found at i:1122209 original size:88 final size:88
Alignment explanation
Indices: 1121961--1122209 Score: 227
Period size: 88 Copynumber: 2.8 Consensus size: 88
1121951 TACCACCTTG
*
1121961 GTCAAATTTTTTTCATTCCA-A-TTGACACATGCTTACCACCCTGGTTAAATTTGT-TACTCTTC
1 GTCAAATTTTTTTCATT-CAGATTTGACACATGGTTACCACCCTGGTTAAATTTGTCT-CTCTTC
* ** * * * *
1122023 TTTCTAATGTATAGTTACCACCATG
64 TATCTAACATAAAGTAACAACCATA
** ** * * ** * * * * *
1122048 GTTGAATTCATCTCATTCTGATTTGACGTAGGGTTACCACCCTGGTCAAATCTG-CTTTTCTCCT
1 GTCAAATTTTTTTCATTCAGATTTGACACATGGTTACCACCCTGGTTAAATTTGTC-TCTCTTCT
*
1122112 ATCTGACATAAAGTAACAACCATA
65 ATCTAACATAAAGTAACAACCATA
* *
1122136 GTCAAATTTTTTTCATTCAGATTTGACACATGGTTACCACCCTAGTTAAATTTGTCTCTCTTCTG
1 GTCAAATTTTTTTCATTCAGATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTA
1122201 TCTAACATA
66 TCTAACATA
1122210 TGGTTACCAC
Statistics
Matches: 119, Mismatches: 38, Indels: 9
0.72 0.23 0.05
Matches are distributed among these distances:
86 1 0.01
87 13 0.11
88 103 0.87
89 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (88 bp):
GTCAAATTTTTTTCATTCAGATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTA
TCTAACATAAAGTAACAACCATA
Found at i:1122557 original size:44 final size:43
Alignment explanation
Indices: 1122415--1122646 Score: 134
Period size: 44 Copynumber: 5.3 Consensus size: 43
1122405 TATGATGCAA
*
1122415 GGTTACCACCCTGGTCAAATTTG-TCTCTCTCTTATCTAATATAT
1 GGTTACCACCCTGGTCAAATTTGTTCTCT-TC-TATCTAACATAT
* * * *
1122459 GGTTACCACCCTGGTCAAATGTT-TTC-CATTCCAATTTGACACAT
1 GGTTACCACCCTGGTCAAAT-TTGTTCTC-TT-CTATCTAACATAT
* * *
1122503 GGTTGA-CACCCTAGTTAAATTTGTGTCTCTTCTGTCTAACATAT
1 GGTT-ACCACCCTGGTCAAATTTGT-TCTCTTCTATCTAACATAT
* * * * * ** *
1122547 GGTTACCACCCCGGTCAAA-TTCTTCTCATTCGGATTTGATGTAG
1 GGTTACCACCCTGGTCAAATTTGTTCTC-TTC-TATCTAACATAT
* * * * *
1122591 GGTTACCACCCTGGTCAAA-GTCTCCTCTTTCTTGTCTGACATAT
1 GGTTACCACCCTGGTCAAATTTGTTCTC-TTC-TATCTAACATAT
1122635 GGTTACCACCCT
1 GGTTACCACCCT
1122647 AGTTAGATTT
Statistics
Matches: 143, Mismatches: 34, Indels: 22
0.72 0.17 0.11
Matches are distributed among these distances:
42 4 0.03
43 9 0.06
44 118 0.83
45 11 0.08
46 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.37
Consensus pattern (43 bp):
GGTTACCACCCTGGTCAAATTTGTTCTCTTCTATCTAACATAT
Found at i:1122601 original size:88 final size:89
Alignment explanation
Indices: 1122415--1122645 Score: 251
Period size: 88 Copynumber: 2.6 Consensus size: 89
1122405 TATGATGCAA
* * *
1122415 GGTTACCACCCTGGTCAAATTTGTCTCTC-TCTTATCTAATATATGGTTACCACCCTGGTCAAAT
1 GGTTACCACCCTGGTCAAATTTGTCTCTCTTCTTGTCTAACATATGGTTACCACCCCGGTCAAAT
* *
1122479 GTTTTCCATTCCAATTTGACACAT
66 GTCTTCCATTCCAATTTGACACAG
* * *
1122503 GGTTGA-CACCCTAGTTAAATTTGTGTCTCTTC-TGTCTAACATATGGTTACCACCCCGGTCAAA
1 GGTT-ACCACCCTGGTCAAATTTGTCTCTCTTCTTGTCTAACATATGGTTACCACCCCGGTCAAA
** ***
1122566 T-TCTTCTCATTCGGATTTGATGTAG
65 TGTCTTC-CATTCCAATTTGACACAG
*
1122591 GGTTACCACCCTGGTCAAA---GTCTCCTCTTTCTTGTCTGACATATGGTTACCACCC
1 GGTTACCACCCTGGTCAAATTTGTCT-CTC-TTCTTGTCTAACATATGGTTACCACCC
1122646 TAGTTAGATT
Statistics
Matches: 119, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 8 0.07
88 102 0.86
89 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (89 bp):
GGTTACCACCCTGGTCAAATTTGTCTCTCTTCTTGTCTAACATATGGTTACCACCCCGGTCAAAT
GTCTTCCATTCCAATTTGACACAG
Found at i:1122690 original size:88 final size:88
Alignment explanation
Indices: 1122535--1122697 Score: 191
Period size: 88 Copynumber: 1.9 Consensus size: 88
1122525 GTGTCTCTTC
* * *
1122535 TGTCTAACATATGGTTACCACCCCGGTCAAATTCTTCTCATTCGGATTTGATGTAGGGTTACCAC
1 TGTCTAACATATGGTTACCACCCCAGTCAAATTCTTCTCATTCGGATTTGATATAGGGTGACCAC
*
1122600 CCTGGTCAAAGTCTCCTCTTTCT
66 CCTAGTCAAAGTCTCCTCTTTCT
* * * * * * ** * **
1122623 TGTCTGACATATGGTTACCACCCTAGTTAGATTTTTTTCATTTTGATTTGATATATGGTGAGTAC
1 TGTCTAACATATGGTTACCACCCCAGTCAAATTCTTCTCATTCGGATTTGATATAGGGTGACCAC
1122688 CCTAGTCAAA
66 CCTAGTCAAA
1122698 TCCCACCTCC
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
88 60 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (88 bp):
TGTCTAACATATGGTTACCACCCCAGTCAAATTCTTCTCATTCGGATTTGATATAGGGTGACCAC
CCTAGTCAAAGTCTCCTCTTTCT
Found at i:1123025 original size:88 final size:88
Alignment explanation
Indices: 1122784--1123094 Score: 272
Period size: 88 Copynumber: 3.5 Consensus size: 88
1122774 TATCTCTCTC
* * * *
1122784 TCTCTTATCTAACAT-TAGGTTACCACCCTAGTTAGATTTTTTTCATTTCGATTTGACACATGGT
1 TCTCTTATCTAACATAT-GGTTACCACCCTAGTCAGATTCTTTTCATTTTGATTTGACATATGGT
* *
1122848 TACCACCCTAGTT-AAATTTG--TC
65 TACCACCCT-GTTCAAATCTGCTTT
* * * * * * * * ** *
1122870 TCTCTTATGTCTAACGTATCGTTATCAACCTGGTCAAATTCTTCTAATTTTGATTTGATGTAAGG
1 TCTCTTA--TCTAACATATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATTTGACATATGG
1122935 TTACCACCCTGTTCAAATCTGCTTT
64 TTACCACCCTGTTCAAATCTGCTTT
* * *
1122960 TCTCCTATCTAACATATGGTAACCACCCTAGTCAGATTCTTTTCATTTTGATTTAACATATGGTT
1 TCTCTTATCTAACATATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATTTGACATATGGTT
* * * *
1123025 ACCACCTTGGTCAAACTCTCCTCT
66 ACCACCCTGTTCAAA-TCTGCTTT
* * * * * *
1123049 T-TCTTGTCTGACATATGGTTTCCACCTTGGTCAGATTTTTTTCATT
1 TCTCTTATCTAACATATGGTTACCACCCTAGTCAGATTCTTTTCATT
1123095 CCAATTTGAT
Statistics
Matches: 175, Mismatches: 43, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
86 7 0.04
87 3 0.02
88 150 0.86
89 8 0.05
90 7 0.04
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (88 bp):
TCTCTTATCTAACATATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATTTGACATATGGTT
ACCACCCTGTTCAAATCTGCTTT
Found at i:1123308 original size:88 final size:88
Alignment explanation
Indices: 1123154--1123418 Score: 227
Period size: 88 Copynumber: 3.0 Consensus size: 88
1123144 CTAACGTGTT
* ** * * **
1123154 AGATTATTTTCATTTCGATTTGATGCATGGTTACCACCCTGGTCAAGTTTGTCTCTCTCTTGTCT
1 AGATTATTTTCATTTCGAGTTGACACATGGTTACCACCCTAGTCAAATTTGTCTCTCTCTCATCT
*
1123219 AACCTATGGTTACCACCCTAGTC
66 AACATATGGTTACCACCCTAGTC
* * *
1123242 AGATTTTTTTCATTTCGAGTTGACACATGGTTACCACCCTAGTTAAATTTGTGTCTCT-TCCATC
1 AGATTATTTTCATTTCGAGTTGACACATGGTTACCACCCTAGTCAAATTTGTCTCTCTCT-CATC
1123306 TAACATATGGTTACCACCCGT-GTC
65 TAACATATGGTTACCACCC-TAGTC
* * * * ** * * *
1123330 AAATTCTTCTT-A-TTCTGATTTGGCGTATGGTTACCACCCTGGTCAAACTTG-CT-TTTCTCCT
1 AGATTATT-TTCATTTC-GAGTTGACACATGGTTACCACCCTAGTCAAATTTGTCTCTCTCT-C-
* * *
1123391 ATCTGACATATAGTTACAACCCTAGTC
62 ATCTAACATATGGTTACCACCCTAGTC
1123418 A
1 A
1123419 AACTCTCTTC
Statistics
Matches: 145, Mismatches: 25, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
86 2 0.01
87 9 0.06
88 131 0.90
89 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (88 bp):
AGATTATTTTCATTTCGAGTTGACACATGGTTACCACCCTAGTCAAATTTGTCTCTCTCTCATCT
AACATATGGTTACCACCCTAGTC
Found at i:1123316 original size:44 final size:44
Alignment explanation
Indices: 1123180--1123420 Score: 129
Period size: 44 Copynumber: 5.5 Consensus size: 44
1123170 GATTTGATGC
* * ** *
1123180 ATGGTTACCACCCTGGTCAAGTTTGTCTCTC-TCTTGTCTAACCT
1 ATGGTTACCACCCTAGTCAAATTTGTCTCTCTTC-CATCTAACAT
* * * * * *
1123224 ATGGTTACCACCCTAGTCAGATTTTTTTCAT-TTCGAGT-TGACAC
1 ATGGTTACCACCCTAGTCAAATTTGTCTC-TCTTCCA-TCTAACAT
* *
1123268 ATGGTTACCACCCTAGTTAAATTTGTGTCTCTTCCATCTAACAT
1 ATGGTTACCACCCTAGTCAAATTTGTCTCTCTTCCATCTAACAT
* * * ** *
1123312 ATGGTTACCACCCGT-GTCAAATTCT-TCT-TATTCTGATTTGGCGT
1 ATGGTTACCACCC-TAGTCAAATT-TGTCTCTCTTC-CATCTAACAT
* * * *
1123356 ATGGTTACCACCCTGGTCAAACTTG-CT-TTTCTCCTATCTGACAT
1 ATGGTTACCACCCTAGTCAAATTTGTCTCTCT-TCC-ATCTAACAT
* *
1123400 ATAGTTACAACCCTAGTCAAA
1 ATGGTTACCACCCTAGTCAAA
1123421 CTCTCTTCTT
Statistics
Matches: 151, Mismatches: 34, Indels: 24
0.72 0.16 0.11
Matches are distributed among these distances:
43 12 0.08
44 133 0.88
45 6 0.04
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (44 bp):
ATGGTTACCACCCTAGTCAAATTTGTCTCTCTTCCATCTAACAT
Found at i:1123422 original size:44 final size:44
Alignment explanation
Indices: 1123262--1123457 Score: 127
Period size: 44 Copynumber: 4.5 Consensus size: 44
1123252 CATTTCGAGT
* * * * *
1123262 TGACACATGGTTACCACCCTAGTTAAA-TTTGTGTCTCTTCC-ATC
1 TGACATATAGTTACCACCCTAGTCAAACTCTCT-TCT-TTCCTATC
* * * *
1123306 TAACATATGGTTACCACCCGT-GTCAAA-T-TCTTCTTATTCTGATT
1 TGACATATAGTTACCACCC-TAGTCAAACTCTCTTCTT-TCCT-ATC
* * * *
1123350 TGGCGTATGGTTACCACCCTGGTCAAACT-TGCTT-TTCTCCTATC
1 TGACATATAGTTACCACCCTAGTCAAACTCT-CTTCTT-TCCTATC
* * *
1123394 TGACATATAGTTACAACCCTAGTCAAACTCTCTTCTTTCTTGTC
1 TGACATATAGTTACCACCCTAGTCAAACTCTCTTCTTTCCTATC
*
1123438 TGACATATGGTTACCACCCT
1 TGACATATAGTTACCACCCT
1123458 GGTTAGATTT
Statistics
Matches: 122, Mismatches: 21, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 3 0.02
44 99 0.81
45 11 0.09
46 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.37
Consensus pattern (44 bp):
TGACATATAGTTACCACCCTAGTCAAACTCTCTTCTTTCCTATC
Found at i:1124111 original size:20 final size:20
Alignment explanation
Indices: 1124083--1124159 Score: 100
Period size: 20 Copynumber: 3.9 Consensus size: 20
1124073 AAGTACCCAG
* *
1124083 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTCTTCA
* * * *
1124103 ATATATCGATACATGCATGA
1 ATGTATCGATACATTCTTCA
1124123 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
1124143 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
1124160 ATCTTTTTAC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:1131328 original size:33 final size:33
Alignment explanation
Indices: 1131291--1131357 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1131281 TTCAACGATT
1131291 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1131324 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1131357 T
1 T
1131358 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1131329 original size:13 final size:13
Alignment explanation
Indices: 1131311--1131335 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1131301 CATAAAATGT
1131311 TGTATCGATACAA
1 TGTATCGATACAA
1131324 TGTATCGATACA
1 TGTATCGATACA
1131336 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1131418 original size:13 final size:13
Alignment explanation
Indices: 1131400--1131424 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1131390 ATTACTCACA
1131400 TGTATCGATACAT
1 TGTATCGATACAT
1131413 TGTATCGATACA
1 TGTATCGATACA
1131425 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1131561 original size:52 final size:52
Alignment explanation
Indices: 1131433--1131553 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1131423 CACTGATCTT
*
1131433 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1131485 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1131537 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1131554 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1138807 original size:9 final size:9
Alignment explanation
Indices: 1138784--1138826 Score: 59
Period size: 9 Copynumber: 4.6 Consensus size: 9
1138774 TAATCTTCAC
1138784 AAAAAAAGATG
1 AAAAAAA-A-G
*
1138795 AAAAAAAAA
1 AAAAAAAAG
1138804 AAAAAAAAG
1 AAAAAAAAG
1138813 AAAAAAAAG
1 AAAAAAAAG
1138822 AAAAA
1 AAAAA
1138827 CCCCTTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 22 0.73
10 1 0.03
11 7 0.23
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:1139843 original size:61 final size:62
Alignment explanation
Indices: 1139768--1140388 Score: 410
Period size: 61 Copynumber: 9.8 Consensus size: 62
1139758 TTTTTAACGT
* * * *
1139768 CCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAATTCCGTGGCACCTCATCTTTAAGT
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTC-TCTTTAAGC
* * *
1139829 CCACAACTCCGTGGCAC-----CCTTTTACAGCCCACAATTCCGTGGCACCTCATCTTTAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTC-TCTTTAAGC
* **
1139887 CCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTCCGTGGCA-CTCT-TCAAAG
1 CCACAACTCCGTGGCA--CTTTTT-TCTTTT-AAAGCCCACAACTCCGTGGCACCTCTCTTTAAG
1139950 C
62 C
* * *
1139951 CCACGACTCCGTGGCAC-----TC-TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAA
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACC----TCTCTTT-AA
1140010 GC
61 GC
* *
1140012 CCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTCCGTGGCA-CTCT-TTAAAG
1 CCACAACTCCGTGGCA--CTTTTT-TCTTTT-AAAGCCCACAACTCCGTGGCACCTCTCTTTAAG
1140075 C
62 C
* * * *
1140076 CCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAA
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACC-TC-TC-TTT--A
1140141 AGC
60 AGC
* * * * *
1140144 CCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCA-CTCTTTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACCTCTCTTT-AAGC
* ** * *
1140207 CCACAACTCTGTGGCACTCTTTTTCCTCCT-AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
1 CCACAACTCCGTGGCACT-TTTTT-CTTTTAAAGCCCACAACTCCGTGGCAC-C--TCT-CTT-T
1140271 AAGC
59 AAGC
* * * *
1140275 CCACAACTCCGTGGCA-----TCCTTTT-AAGCCCATAACTCCGTGGCACTTTTTTCATCTTTGA
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC----CTC-TCTTTAA
*
1140334 GT
61 GC
*
1140336 CCATAACTCCGTGGCACCTTTTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC
1 CCACAACTCCGTGGCA-C--TTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC
1140389 TCTTTTTCCC
Statistics
Matches: 454, Mismatches: 50, Indels: 103
0.75 0.08 0.17
Matches are distributed among these distances:
54 20 0.04
55 3 0.01
56 2 0.00
57 1 0.00
58 52 0.11
59 3 0.01
60 2 0.00
61 99 0.22
62 11 0.02
63 44 0.10
64 48 0.11
65 8 0.02
66 15 0.03
67 21 0.05
68 73 0.16
69 9 0.02
70 23 0.05
71 20 0.04
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (62 bp):
CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTCTCTTTAAGC
Found at i:1139935 original size:125 final size:125
Alignment explanation
Indices: 1139794--1140290 Score: 551
Period size: 125 Copynumber: 3.9 Consensus size: 125
1139784 TTTTTTCTTT
* * * * *
1139794 AAAGCCCACAATTCCGTGGCACCTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTACAGCCC
1 AAAGCCCACGACTCCGTGGCA-CTC-T-TTAAAGCCCACAACTCCGTGGCACCCTTTTAAAGCCC
* *
1139859 ACAATTCCGTGGCACC-TCATC-TTT-AAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
63 ACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
* * * *
1139919 AAAGCCCACGACTCCGTGGCACTCTTCAAAGCCCACGACTCCGTGGCACTC-TTCAAAGCCCACA
1 AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCCGTGGCACCCTTTTAAAGCCCACA
*
1139983 ACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
66 ACTCCGTGGCACCTTCTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
*
1140044 AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAG
1 AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCCGTGGCA-C--C--CTTTT-AAAG
* * *
1140109 CCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCAC-C-TTCT-TCTTT
60 CCCACAACTCCGTGGCACCTTCTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTT
1140171 TC
124 TC
* * *
1140173 AAAGCCCACGACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTCCTA
1 AAAGCCCACGACTCCGTGGCACTC--TTTAAAGCCCACAACTCCGTGGCAC-C-CTTT--T--AA
* * *
1140238 AGCCCACAACTCTGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCA
58 AGCCCACAACTCCGTGGCAC-CTTCTT-CTTTTAAAGCCCACAACTCCGTGGCA
1140291 TCCTTTTAAG
Statistics
Matches: 327, Mismatches: 26, Indels: 32
0.85 0.07 0.08
Matches are distributed among these distances:
121 23 0.07
122 24 0.07
123 1 0.00
124 6 0.02
125 100 0.31
126 1 0.00
128 4 0.01
129 33 0.10
130 6 0.02
131 71 0.22
132 54 0.17
133 4 0.01
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (125 bp):
AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCCGTGGCACCCTTTTAAAGCCCACA
ACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
Found at i:1139946 original size:27 final size:27
Alignment explanation
Indices: 1139916--1139994 Score: 149
Period size: 27 Copynumber: 2.9 Consensus size: 27
1139906 TTTTTCTCTT
1139916 TTCAAAGCCCACGACTCCGTGGCACTC
1 TTCAAAGCCCACGACTCCGTGGCACTC
1139943 TTCAAAGCCCACGACTCCGTGGCACTC
1 TTCAAAGCCCACGACTCCGTGGCACTC
*
1139970 TTCAAAGCCCACAACTCCGTGGCAC
1 TTCAAAGCCCACGACTCCGTGGCAC
1139995 CTTTTTCTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.24, C:0.41, G:0.18, T:0.18
Consensus pattern (27 bp):
TTCAAAGCCCACGACTCCGTGGCACTC
Found at i:1140016 original size:34 final size:33
Alignment explanation
Indices: 1139759--1140427 Score: 447
Period size: 34 Copynumber: 20.9 Consensus size: 33
1139749 TCAAATACCT
* * * * *
1139759 TTTTAACGTCCACGACTCAGTGGCA-TTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* **
1139791 -TTTAAAGCCCACAATTCCGTGGCACC-TCATC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
1139822 -TTT-AAGTCCACAACTCCGTGGCACC-----C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * **
1139848 TTTTACAGCCCACAATTCCGTGGCACC-TCATC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1139880 -TTT-AAGCCCACAACTCCGTGGCACTCTTTTTCTC
1 TTTTAAAGCCCACAACTCCGTGGCAC-C-TTTT-TC
*
1139914 TTTTCAAAGCCCACGACTCCGTGGCA-C----TC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
1139943 -TTCAAAGCCCACGACTCCGTGGCA-C----TC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
1139970 -TTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1140002 TGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTC
1 T-TTTAAAGCCCACAACTCCGTGGCAC-C-TTTT-TC
*
1140039 TTTTCAAAGCCCACGACTCCGTGGCA-C----TC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
1140068 -TTTAAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
1140100 TTTTCAAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
1140134 TTTTCAAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
1140168 TTTTCAAAGCCCACGACTCCGTGGCA-C--TCT-
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
*
1140198 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
** *
1140233 TCCT-AAGCCCACAACTCTGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* *
1140267 TTCT-AAGCCCACAACTCCGTGGCA-----TCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
1140294 TTTT-AAGCCCATAACTCCGTGGCACTTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * *
1140326 ATCTTT-GAGTCCATAACTCCGTGGCACCTTTTTTTTC
1 -T-TTTAAAGCCCACAACTCCGTGGCACC---TTTTTC
1140363 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--C
* * *
1140399 TTTT-AAGTCCATAACTCCGTGGCATCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT
1140428 CTCCCTTCCT
Statistics
Matches: 537, Mismatches: 48, Indels: 102
0.78 0.07 0.15
Matches are distributed among these distances:
26 1 0.00
27 92 0.17
28 27 0.05
29 23 0.04
30 43 0.08
31 31 0.06
32 7 0.01
33 8 0.01
34 196 0.36
35 29 0.05
36 31 0.06
37 49 0.09
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (33 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:1140061 original size:98 final size:96
Alignment explanation
Indices: 1139943--1140261 Score: 368
Period size: 98 Copynumber: 3.3 Consensus size: 96
1139933 CGTGGCACTC
*
1139943 TTCAAAGCCCACGACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
1 TTCAAAGCCCACAACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACC-TTTTCT-TTTA
*
1140008 AAGCCCACAACTCCGTGGCACTCTTTTTCTCTT
64 AAGCCCACAACTCTGTGGCACTCTTTTTCTCTT
* * *
1140041 TTCAAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCA
1 TTCAAAGCCCACAACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACCTT-TTCTTTT-A
*
1140106 AAGCCCACAACTCTGTGGCAC-C-TTCT-TCTT
64 AAGCCCACAACTCTGTGGCACTCTTTTTCTCTT
* * *
1140136 TTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCA-C-TCT-
1 TTCAAAGCCCACAACTCCGTGGCA----C-TC--TTCAAAGCCCACAACTCCGTGGCACCTTTTC
1140198 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC-C--
59 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCTCTT
* * *
1140233 TCCTAAGCCCACAACTCTGTGGCACTCTT
1 TTCAAAGCCCACAACTCCGTGGCACTCTT
1140262 TTTCCTTCTA
Statistics
Matches: 196, Mismatches: 13, Indels: 32
0.81 0.05 0.13
Matches are distributed among these distances:
90 2 0.01
92 2 0.01
93 1 0.01
95 26 0.13
96 3 0.02
97 50 0.26
98 81 0.41
99 6 0.03
100 3 0.02
101 1 0.01
102 21 0.11
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.30
Consensus pattern (96 bp):
TTCAAAGCCCACAACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTAAA
GCCCACAACTCTGTGGCACTCTTTTTCTCTT
Found at i:1140218 original size:97 final size:97
Alignment explanation
Indices: 1139943--1140395 Score: 395
Period size: 97 Copynumber: 4.7 Consensus size: 97
1139933 CGTGGCACTC
*
1139943 TTCAAAGCCCACGACTCCGTGGCA----C-TC-TTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTCAAAGCCCACAACTCCGTGGCA-C----TC
*
1140002 TGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTT
61 TTTTTAAAGCCCACAACTCCGTGGCACTC-TTTT-TCTT
* *
1140041 TTCAAAGCCCACGACTCCGTGGCA----C-TCTTT-AAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTCAAAGCCCACAACTCCGTGGCA-C-TC-T-
* *
1140100 TTTTCAAAGCCCACAACTCTGTGGCAC-CTTCTTCTT
62 TTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
1140136 TTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTCTTC-TTTCAAAGCCCACAACTCCGTGGCACTCTTTT
* *
1140201 TAAAGCCCACAACTCTGTGGCACTCTTTTTC-C
65 TAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* * * * * * *
1140233 TCCTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCA-TCCTTT
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTCTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
*
1140297 T-AAGCCCATAACTCCGTGGCACT-TTTTTCATCT
65 TAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-T
* * * * *
1140330 TT--GAGTCCATAACTCCGTGGCACCTTTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 TTCAAAGCCCACAACTCCGTGGCACC---TTCTTCTTTCAAAGCCCACAACTCCGTGGCACTCTT
1140393 TTT
63 TTT
1140396 CCCTTTTAAG
Statistics
Matches: 306, Mismatches: 29, Indels: 40
0.82 0.08 0.11
Matches are distributed among these distances:
94 7 0.02
95 66 0.22
96 10 0.03
97 100 0.33
98 92 0.30
99 4 0.01
100 4 0.01
101 4 0.01
102 19 0.06
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.32
Consensus pattern (97 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
AAAGCCCACAACTCCGTGGCACTCTTTTTCTT
Done.