Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1546936
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 9 of 13
Found at i:1140241 original size:63 final size:63
Alignment explanation
Indices: 1139967--1140264 Score: 341
Period size: 63 Copynumber: 4.6 Consensus size: 63
1139957 CTCCGTGGCA
* *
1139967 CTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCT
1 CTCTTCAAAGCCCACAACTCCGTGGCA-C----TCTTTTTAAAGCCCACAACTCTGTGGCAC-CT
*
1140032 TTTT
60 TCTT
*
1140036 CTCTTTTCAAAGCCCACGACTCCGTGGCACTC--TTTAAAGCCCACAACTCTGTGGCACCTTCTT
1 CTC--TTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACCTTCTT
* *
1140099 CTTTTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACCTT
1 CTCTTCAAAGCCCACAACTCCGTGGCA-C-TC-T-TTTT-AAAGCCCACAACTCTGTGGCACCTT
1140164 CTT
61 CTT
* * *
1140167 CTTTTCAAAGCCCACGACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT
1 CTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCAC-CTTCTT
* * *
1140231 C-CTCCTAAGCCCACAACTCTGTGGCACTCTTTTT
1 CTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1140265 CCTTCTAAGC
Statistics
Matches: 205, Mismatches: 14, Indels: 26
0.84 0.06 0.11
Matches are distributed among these distances:
61 22 0.11
62 1 0.00
63 59 0.29
64 34 0.17
65 1 0.00
66 4 0.02
67 4 0.02
68 53 0.26
69 3 0.01
70 1 0.00
71 23 0.11
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (63 bp):
CTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACCTTCTT
Found at i:1140324 original size:27 final size:27
Alignment explanation
Indices: 1140264--1140317 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
1140254 GCACTCTTTT
*
1140264 TCCTTCTAAGCCCACAACTCCGTGGCA
1 TCCTTTTAAGCCCACAACTCCGTGGCA
*
1140291 TCCTTTTAAGCCCATAACTCCGTGGCA
1 TCCTTTTAAGCCCACAACTCCGTGGCA
1140318 CTTTTTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.37, G:0.15, T:0.26
Consensus pattern (27 bp):
TCCTTTTAAGCCCACAACTCCGTGGCA
Found at i:1140380 original size:36 final size:34
Alignment explanation
Indices: 1140293--1140427 Score: 155
Period size: 35 Copynumber: 3.9 Consensus size: 34
1140283 CCGTGGCATC
1140293 CTTTTAAGCCCATAACTCCGTGGCACTTTTTTCAT
1 CTTTTAAGCCCATAACTCCGTGGCACTTTTTT-AT
* * *
1140328 C-TTTGAGTCCATAACTCCGTGGCACCTTTTTTTT
1 CTTTTAAGCCCATAACTCCGTGGCA-CTTTTTTAT
* **
1140362 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAGCCCATAACTCCGTGGCACT-TTTTTAT
*
1140398 CTTTTAAGTCCATAACTCCGTGGCATCTTT
1 CTTTTAAGCCCATAACTCCGTGGCA-CTTT
1140428 CTCCCTTCCT
Statistics
Matches: 85, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
34 23 0.27
35 33 0.39
36 29 0.34
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.39
Consensus pattern (34 bp):
CTTTTAAGCCCATAACTCCGTGGCACTTTTTTAT
Found at i:1140433 original size:34 final size:34
Alignment explanation
Indices: 1140292--1140434 Score: 153
Period size: 36 Copynumber: 4.1 Consensus size: 34
1140282 TCCGTGGCAT
*
1140292 CCTTTTAAGCCCATAACTCCGTGGCA-CTTTTTT
1 CCTTTTAAGCCCATAACTCCGTGGCATCTTTTTC
* * * * *
1140325 CATCTTTGAGTCCATAACTCCGTGGCACCTTTTTTT
1 CCT-TTTAAGCCCATAACTCCGTGGCATC-TTTTTC
* *
1140361 TCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 CCTTTT-AAGCCCATAACTCCGTGGCA-TCTTTTTC
* *
1140397 CCTTTTAAGTCCATAACTCCGTGGCATCTTTCTC
1 CCTTTTAAGCCCATAACTCCGTGGCATCTTTTTC
1140431 CCTT
1 CCTT
1140435 CCTAAAGCCC
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
33 2 0.02
34 32 0.35
35 22 0.24
36 34 0.37
37 1 0.01
ACGTcount: A:0.17, C:0.31, G:0.12, T:0.39
Consensus pattern (34 bp):
CCTTTTAAGCCCATAACTCCGTGGCATCTTTTTC
Found at i:1140441 original size:71 final size:70
Alignment explanation
Indices: 1140298--1140447 Score: 187
Period size: 71 Copynumber: 2.1 Consensus size: 70
1140288 GCATCCTTTT
* * * **
1140298 AAGCCCATAACTCCGTGGCACTTTTTTCATCTTTGAGTCCATAACTCCGTGGCACCTTTTTTTTC
1 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCATAACTCCGTGGCACCTTTTCTCCC
*
1140363 TTTTA
66 TTCTA
* *
1140368 AAGCCCACAACTCCGTGGCACTCTTTTTC-CCTTTTAAGTCCATAACTCCGTGGCATC-TTTCTC
1 AAGCCCACAACTCCGTGGCACT-TTTTTCATC-TTTAAGTCCATAACTCCGTGGCACCTTTTCTC
1140431 CCTTCCTA
64 CCTT-CTA
1140439 AAGCCCACA
1 AAGCCCACA
1140448 CAAGTCGGTG
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
70 29 0.42
71 40 0.58
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (70 bp):
AAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCATAACTCCGTGGCACCTTTTCTCCC
TTCTA
Found at i:1140475 original size:33 final size:35
Alignment explanation
Indices: 1140432--1140501 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
1140422 ATCTTTCTCC
1140432 CTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
1140466 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
1140500 CT
1 CT
1140502 AAGCCCAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 24 0.69
34 11 0.31
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (35 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:1140571 original size:49 final size:49
Alignment explanation
Indices: 1140518--1141117 Score: 773
Period size: 49 Copynumber: 12.3 Consensus size: 49
1140508 AATATCGCTA
* *
1140518 GCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTAGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* * * * *
1140567 GCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* *
1140616 GCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTAGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* * * * *
1140665 GCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* *
1140714 GCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTAGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* * * * *
1140763 GCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* *
1140812 GCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTAGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* * * * *
1140861 GCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* * *
1140910 GCCTTGAATCAACATATTGGCATCATCATCTTTAAGTCCAATGTAGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* * *
1140959 GCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATGTAGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* *
1141008 GCCTTGAATCAACACATTGG---CA-C--CTTTAAGTCCAATATAGCTG
1 GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
* *
1141051 GCCTTGAATCAGCATATTGGCA-CATTTTCCATCTTTAAGTTCAATGTAGCTG
1 GCCTTGAATCAGCACATTGGCACCA---T-CATCTTTAAGTCCAATGTAGCTG
1141103 GCCTTGAATCAGCAC
1 GCCTTGAATCAGCAC
1141118 GTTGACATCC
Statistics
Matches: 470, Mismatches: 72, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
43 37 0.08
45 3 0.01
46 1 0.00
49 396 0.84
50 1 0.00
52 32 0.07
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (49 bp):
GCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATGTAGCTG
Found at i:1140675 original size:98 final size:98
Alignment explanation
Indices: 1140496--1141116 Score: 1020
Period size: 98 Copynumber: 6.4 Consensus size: 98
1140486 CGGTGGCAAC
* *
1140496 CCTTCTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATG
1140561 TAGCTGGCCTTGACTCAGCACATTGGCACCTTCA
65 TAGCTGGCCTTGACTCAGCACATTGGCACCTTCA
1140595 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1140660 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
1140693 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1140758 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
*
1140791 CCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1140856 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
*
1140889 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1140954 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
* * * * *
1140987 CCTTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGG---CA-C--CTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
* * *
1141046 AGCTGGCCTTGAATCAGCATATTGGCACATTTTCCA
66 AGCTGGCCTTGACTCAGCACATTGGCAC--CTT-CA
* * * *
1141082 TCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
1141117 CGTTGACATC
Statistics
Matches: 504, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
92 40 0.08
94 3 0.01
95 36 0.07
98 421 0.84
99 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (98 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
Found at i:1141055 original size:22 final size:22
Alignment explanation
Indices: 1140987--1141055 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
1140977 GGCACCTTCA
*
1140987 CCTTTAAGTCCAATGTAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
* * * *
1141009 CCTTGAA-T-CAACACA-TTGG
1 CCTTTAAGTCCAATATAGCTGG
1141028 CACCTTTAAGTCCAATATAGCTGG
1 --CCTTTAAGTCCAATATAGCTGG
1141052 CCTT
1 CCTT
1141056 GAATCAGCAT
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.21
22 11 0.33
23 5 0.15
24 3 0.09
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (22 bp):
CCTTTAAGTCCAATATAGCTGG
Found at i:1141101 original size:52 final size:54
Alignment explanation
Indices: 1141031--1141179 Score: 176
Period size: 52 Copynumber: 2.8 Consensus size: 54
1141021 ACATTGGCAC
1141031 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
1141083 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * *
1141138 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1141180 TCTTTATCAC
Statistics
Matches: 78, Mismatches: 16, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
52 37 0.47
54 6 0.08
55 35 0.45
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.34
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
Found at i:1141298 original size:49 final size:49
Alignment explanation
Indices: 1141196--1141299 Score: 136
Period size: 49 Copynumber: 2.1 Consensus size: 49
1141186 TCACTCTTCT
* * * * *
1141196 CATCATCATTTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGG
1 CATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGA
* * *
1141245 CATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGA
1 CATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGA
1141294 CATCTT
1 CATCTT
1141300 TTTTCTCATC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (49 bp):
CATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGA
Found at i:1141320 original size:171 final size:171
Alignment explanation
Indices: 1141031--1141425 Score: 691
Period size: 171 Copynumber: 2.3 Consensus size: 171
1141021 ACATTGGCAC
* *
1141031 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
*
1141096 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTCAAGCCCAATATCGTTGGCC
1141161 ATGAATCAACATATTGGCATCTTTATCACTCTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTCTTCTCATCATCAT
*
1141205 TTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
*
1141270 GCTGGCCTTGAATCAGCACGTTGACATCTTTTTTCTCATCTTCAAGCCCAATATCGTTGGCCATG
66 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTCAAGCCCAATATCGTTGGCCATG
* *
1141335 AATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAT
131 AATCAACATATTGGCATCTTTATCACTCTTCTCATCATCAT
*
1141376 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
1141426 ATCTCTAAAA
Statistics
Matches: 212, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
171 169 0.80
172 5 0.02
174 38 0.18
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (171 bp):
CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTCAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTCTTCTCATCATCAT
Found at i:1142182 original size:33 final size:33
Alignment explanation
Indices: 1142145--1142211 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1142135 TTCAACGATT
1142145 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1142178 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1142211 T
1 T
1142212 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1142183 original size:13 final size:13
Alignment explanation
Indices: 1142165--1142189 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1142155 CATAAAATGT
1142165 TGTATCGATACAA
1 TGTATCGATACAA
1142178 TGTATCGATACA
1 TGTATCGATACA
1142190 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1142272 original size:13 final size:13
Alignment explanation
Indices: 1142254--1142278 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1142244 ATTACTCACA
1142254 TGTATCGATACAT
1 TGTATCGATACAT
1142267 TGTATCGATACA
1 TGTATCGATACA
1142279 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1142415 original size:52 final size:52
Alignment explanation
Indices: 1142287--1142407 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1142277 CACTGATCTT
*
1142287 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1142339 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1142391 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1142408 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1151503 original size:21 final size:21
Alignment explanation
Indices: 1151479--1151519 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1151469 CTAAGTAAAA
1151479 ATATGTATT-GTATCAATACAT
1 ATAT-TATTGGTATCAATACAT
1151500 ATATTATTGGTATCAATACA
1 ATATTATTGGTATCAATACA
1151520 CAAGGTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (21 bp):
ATATTATTGGTATCAATACAT
Found at i:1151679 original size:53 final size:53
Alignment explanation
Indices: 1151599--1151734 Score: 254
Period size: 53 Copynumber: 2.6 Consensus size: 53
1151589 AGATTGCATA
*
1151599 GTATCGATACATACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
1151652 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1151705 GTATCGATACACACAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
1151735 TTGGCAGTAG
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 81 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:1152062 original size:18 final size:18
Alignment explanation
Indices: 1152049--1152087 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
1152039 GATATATCAT
1152049 CAATTTAGCCTATAAATA
1 CAATTTAGCCTATAAATA
1152067 CAATTTAGCCTATAAATA
1 CAATTTAGCCTATAAATA
1152085 CAA
1 CAA
1152088 CATATCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.31
Consensus pattern (18 bp):
CAATTTAGCCTATAAATA
Found at i:1152383 original size:34 final size:35
Alignment explanation
Indices: 1152320--1152386 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1152310 CTAAGTGATT
1152320 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
1152356 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
1152387 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:1153505 original size:21 final size:21
Alignment explanation
Indices: 1153479--1153520 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1153469 AATCAACCAT
* *
1153479 TCAAGATGATGATGAAGATGA
1 TCAAGAGGATGATGAAAATGA
*
1153500 TCAAGAGGTTGATGAAAATGA
1 TCAAGAGGATGATGAAAATGA
1153521 AGAAATGGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.24
Consensus pattern (21 bp):
TCAAGAGGATGATGAAAATGA
Found at i:1156380 original size:48 final size:48
Alignment explanation
Indices: 1156325--1156417 Score: 186
Period size: 48 Copynumber: 1.9 Consensus size: 48
1156315 AAGGGGAGAA
1156325 ATTATTGGTATAAATTTGGTTTTATCAACTTAGCTTATGAACCAACGT
1 ATTATTGGTATAAATTTGGTTTTATCAACTTAGCTTATGAACCAACGT
1156373 ATTATTGGTATAAATTTGGTTTTATCAACTTAGCTTATGAACCAA
1 ATTATTGGTATAAATTTGGTTTTATCAACTTAGCTTATGAACCAA
1156418 AAAGGGGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (48 bp):
ATTATTGGTATAAATTTGGTTTTATCAACTTAGCTTATGAACCAACGT
Found at i:1156960 original size:56 final size:57
Alignment explanation
Indices: 1156898--1157013 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 57
1156888 TCAAATTATA
1156898 GGTTACGATCTTTGATGAAACGGAGAGTATGATGGATCAAC-GACCTTGTGATAATT
1 GGTTACGATCTTTGATGAAACGGAGAGTATGATGGATCAACTGACCTTGTGATAATT
1156954 GGTTACGATCTTTGATGAAACGGAGAGTATGATGGATCAACTGACCTTGTGATAATT
1 GGTTACGATCTTTGATGAAACGGAGAGTATGATGGATCAACTGACCTTGTGATAATT
1157011 GGT
1 GGT
1157014 AAGATCATAA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 41 0.69
57 18 0.31
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (57 bp):
GGTTACGATCTTTGATGAAACGGAGAGTATGATGGATCAACTGACCTTGTGATAATT
Found at i:1157431 original size:20 final size:19
Alignment explanation
Indices: 1157406--1157475 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
1157396 ACCCTGAAAA
1157406 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
1157426 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
*
1157445 AGTATCGATACACA-CAATAT
1 -GTATCGATACACATTAA-AT
1157465 GTATCGATACA
1 GTATCGATACA
1157476 GGACATTGGC
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
19 15 0.37
20 26 0.63
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:1157522 original size:19 final size:19
Alignment explanation
Indices: 1157498--1157581 Score: 54
Period size: 19 Copynumber: 4.6 Consensus size: 19
1157488 TATCCAAATT
1157498 TGTATCGATACACATAATA
1 TGTATCGATACACATAATA
* ** *
1157517 TGTATCAATACAGGTCAT-
1 TGTATCGATACACATAATA
*
1157535 TGGTA--G-TAGC-CA-AATT
1 T-GTATCGATA-CACATAATA
*
1157551 TGTATCGATACACACAATA
1 TGTATCGATACACATAATA
1157570 TGTATCGATACA
1 TGTATCGATACA
1157582 TTGGCAGTAG
Statistics
Matches: 48, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
15 5 0.10
16 3 0.06
17 3 0.06
18 5 0.10
19 32 0.67
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (19 bp):
TGTATCGATACACATAATA
Found at i:1157528 original size:53 final size:53
Alignment explanation
Indices: 1157446--1157581 Score: 227
Period size: 53 Copynumber: 2.6 Consensus size: 53
1157436 AGATTGCATA
*
1157446 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTATCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
* * * *
1157499 GTATCGATACACATAATATGTATCAATACAGGTCATTGGTAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1157552 GTATCGATACACACAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
1157582 TTGGCAGTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 76 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:1171162 original size:28 final size:28
Alignment explanation
Indices: 1171123--1171689 Score: 614
Period size: 28 Copynumber: 19.9 Consensus size: 28
1171113 TTTCTTCATG
* * *
1171123 GCCCATAAGTTAGTGGCACTCTTTTAAA
1 GCCCACAAGTCAGTGGCACTCTTTCAAA
* * *
1171151 GCTCACCAGTTAGTGGCA-TCCTTTCAAA
1 GCCCACAAGTCAGTGGCACT-CTTTCAAA
* *
1171179 GCCCACAAGTCAGTAGCACCCTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTCAAA
*
1171207 GCCCACAAGTCAGTGGCA-TCCTTTTAAA
1 GCCCACAAGTCAGTGGCACT-CTTTCAAA
* * *
1171235 GCCCACGAGTCAGTGCCA-TCCTTTCGAA
1 GCCCACAAGTCAGTGGCACT-CTTTCAAA
*
1171263 GCCCACGAGTCAGTGGCAC-CATTTCAAA
1 GCCCACAAGTCAGTGGCACTC-TTTCAAA
*
1171291 GCCCACAAGTTAGTGGCAC-CTTTTCAAA
1 GCCCACAAGTCAGTGGCACTC-TTTCAAA
1171319 GCCCACAAGTCAGTGGCA-TCCTTTCAAA
1 GCCCACAAGTCAGTGGCACT-CTTTCAAA
1171347 GCCCACAAGTCAGTGGCA-TCCTTTCAAA
1 GCCCACAAGTCAGTGGCACT-CTTTCAAA
*
1171375 GCCCACGAGTCAGTGGCAACTCTTTTCAAA
1 GCCCACAAGTCAGTGGC-ACTC-TTTCAAA
* *
1171405 GCCCATAAGTTAGTGGCA-TCCTTTCAAA
1 GCCCACAAGTCAGTGGCACT-CTTTCAAA
1171433 GCCCACAAGTCAGTGGCAC-CTTTTCAAA
1 GCCCACAAGTCAGTGGCACTC-TTTCAAA
*
1171461 GCCCACAAGTCAGTGGCACTATTTTCAAA
1 GCCCACAAGTCAGTGGCACT-CTTTCAAA
*
1171490 GCCCACAAGTCAGTGGCACCCTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTCAAA
* *
1171518 GCCCATAAGTTAGTGGCACTCTTTTCAAA
1 GCCCACAAGTCAGTGGCACTC-TTTCAAA
*
1171547 GCCCACAAGTCAGTGGCACCCTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTCAAA
*
1171575 GCCCACAAGTCAGTGGCACTCTTTTCAGA
1 GCCCACAAGTCAGTGGCACTC-TTTCAAA
* *
1171604 TCCCACAAGCCAGTGGCGACTCTTTTCAAA
1 GCCCACAAGTCAGTGGC-ACTC-TTTCAAA
* *
1171634 GCCCTCACAAGTCGGTGACAACTCTTTTCAAA
1 G-CC-CACAAGTCAGTGGC-ACTC-TTTCAAA
* *
1171666 GCCAGACAAGTTAGTGGCAC-CTTT
1 GCC-CACAAGTCAGTGGCACTCTTT
1171690 TTTAAAAAAA
Statistics
Matches: 467, Mismatches: 52, Indels: 40
0.84 0.09 0.07
Matches are distributed among these distances:
27 3 0.01
28 313 0.67
29 78 0.17
30 35 0.07
31 14 0.03
32 24 0.05
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
GCCCACAAGTCAGTGGCACTCTTTCAAA
Found at i:1171265 original size:84 final size:85
Alignment explanation
Indices: 1171123--1171689 Score: 714
Period size: 84 Copynumber: 6.6 Consensus size: 85
1171113 TTTCTTCATG
* * * * *
1171123 GCCCATAAGTTAGTGGCACTCTTTT-AAAGCTCACCAGTTAGTGGCATCCTTTCAAAGCCCACAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAA
*
1171187 GTCAGTAGCACCCTTTCAAA
66 GTCAGTGGCACCCTTTCAAA
* * * *
1171207 GCCCACAAGTCAGTGGCA-TCCTTTT-AAAGCCCACGAGTCAGTGCCATCCTTTCGAAGCCCACG
1 GCCCACAAGTCAGTGGCACT-CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACA
*
1171270 AGTCAGTGGCACCATTTCAAA
65 AGTCAGTGGCACCCTTTCAAA
*
1171291 GCCCACAAGTTAGTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAA
*
1171355 GTCAGTGGCATCCTTTCAAA
66 GTCAGTGGCACCCTTTCAAA
* * *
1171375 GCCCACGAGTCAGTGGCAACTCTTTTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAAGCCCACA
1 GCCCACAAGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACA
*
1171440 AGTCAGTGGCACCTTTTCAAA
65 AGTCAGTGGCACCCTTTCAAA
* * *
1171461 GCCCACAAGTCAGTGGCACTATTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAA
* *
1171526 GTTAGTGGCACTCTTTTCAAA
66 GTCAGTGGCAC-CCTTTCAAA
* * * *
1171547 GCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAGATCCCACA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACA
* *
1171611 AGCCAGTGGCGACTCTTTTCAAA
65 AGTCAGTGGC-AC-CCTTTCAAA
* * * *
1171634 GCCCTCACAAGTCGGTGACAACTCTTTTCAAAGCCAGACAAGTTAGTGGCA-CCTTT
1 G-CC-CACAAGTCAGTGGC-ACTCTTTTCAAAGCC-CACAAGTCAGTGGCATCCTTT
1171690 TTTAAAAAAA
Statistics
Matches: 425, Mismatches: 45, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
83 6 0.01
84 157 0.37
85 80 0.19
86 125 0.29
87 13 0.03
88 2 0.00
89 12 0.03
90 6 0.01
91 11 0.03
92 13 0.03
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (85 bp):
GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAA
GTCAGTGGCACCCTTTCAAA
Found at i:1171503 original size:57 final size:57
Alignment explanation
Indices: 1171123--1171690 Score: 695
Period size: 56 Copynumber: 9.9 Consensus size: 57
1171113 TTTCTTCATG
* * * * *
1171123 GCCCATAAGTTAGTGGCACTCTTTT-AAAGCTCACCAGTTAGTGGCATCC-TTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAA
* *
1171179 GCCCACAAGTCAGTAGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTT-AAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAA
* * * * * *
1171235 GCCCACGAGTCAGTGCCA-TCCTTTCGAAGCCCACGAGTCAGTGGCACCATTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAA
*
1171291 GCCCACAAGTTAGTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAA
* *
1171347 GCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACGAGTCAGTGGCAACTCTTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC-AC-CTTTTCAAA
* * *
1171405 GCCCATAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAA
* *
1171461 GCCCACAAGTCAGTGGCACTATTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAA
* * *
1171518 GCCCATAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAA
* * *
1171575 GCCCACAAGTCAGTGGCACTCTTTTCAGATCCCACAAGCCAGTGGCGACTCTTTTCAAA
1 GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC-AC-CTTTTCAAA
* * * *
1171634 GCCCTCACAAGTCGGTGACAACTCTTTTCAAAGCCAGACAAGTTAGTGGCACCTTTT
1 G-CC-CACAAGTCAGTGGC-ACTCTTTTCAAAGCC-CACAAGTCAGTGGCACCTTTT
1171691 TTAAAAAAAA
Statistics
Matches: 449, Mismatches: 46, Indels: 29
0.86 0.09 0.06
Matches are distributed among these distances:
55 9 0.02
56 196 0.44
57 139 0.31
58 51 0.11
59 9 0.02
60 2 0.00
61 17 0.04
62 15 0.03
63 11 0.02
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (57 bp):
GCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAA
Found at i:1175019 original size:44 final size:44
Alignment explanation
Indices: 1174796--1175030 Score: 144
Period size: 44 Copynumber: 5.4 Consensus size: 44
1174786 TGTTGCAACA
* * **
1174796 ATGGTTTCCACCCTGCTTAAATTTGTCTCTCTTCTG-TCAACGT
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTTTGACGT
* * *
1174839 ATGGTTACCACCATGGTTGAATTAT-TCTC-ATTCTGATTTGACAG-
1 ATGGTTACCACCCTGGTTAAATT-TGTCTCTCTTCTG-TTTGAC-GT
* * * * * *
1174883 AGGGTTACCACCCTGGTCAAATTT-ACTTTTCTCCTATTTGACGT
1 ATGGTTACCACCCTGGTTAAATTTGTC-TCTCTTCTGTTTGACGT
* * * * * * **
1174927 ACGGTAACAACCCTAGTTAGAATCTTGTC-ATC--CAGATTTGACAC
1 ATGGTTACCACCCTGGTTA-AAT-TTGTCTCTCTTCTG-TTTGACGT
* *
1174971 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTCTAACGT
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTTTGACGT
1175015 ATGGTTACCACCCTGG
1 ATGGTTACCACCCTGG
1175031 ACAGATTCAT
Statistics
Matches: 141, Mismatches: 37, Indels: 27
0.69 0.18 0.13
Matches are distributed among these distances:
42 10 0.07
43 32 0.23
44 85 0.60
45 11 0.08
46 2 0.01
47 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (44 bp):
ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTTTGACGT
Found at i:1175053 original size:88 final size:88
Alignment explanation
Indices: 1174796--1175725 Score: 291
Period size: 88 Copynumber: 10.8 Consensus size: 88
1174786 TGTTGCAACA
* * * *
1174796 ATGGTTTCCACCCTGCTTAAATTTGTCTCTCTTCTGTC-AACGTATGGTTACCACCATGGTTGAA
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTCTAACGTATGGTTACCACCCTGGTAG-A
*
1174860 TT-ATTCTCATTCTGATTTGACAG
65 TTCATTCTCATTCTGATTTGACAC
* * * * * * * * * * * *
1174883 AGGGTTACCACCCTGGTCAAATTT-ACTTTTCTCCTATTTGACGTACGGTAACAACCCTAGTTAG
1 ATGGTTACCACCCTGGTTAAATTTGTC-TCTCTTCTGTCTAACGTATGGTTACCACCCT-GGTAG
* * * *
1174947 AATC-TTGTCATCCAGATTTGACAC
64 ATTCATTCTCATTCTGATTTGACAC
*
1174971 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTCTAACGTATGGTTACCACCCTGGACAGA
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTCTAACGTATGGTTACCACCCTGG-TAGA
* * *
1175036 TTCATTCT-ATTTTGATTTAACAT
65 TTCATTCTCATTCTGATTTGACAC
* * ** * * * * * * *
1175059 ATGTTTACCACTCTCATCAAA-CTCTC-CTCTTTCTTGTCTGACATATGGTTACCATCATGGTCA
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTC-TTC-TGTCTAACGTATGGTTACCACCCTGGT-A
* * * *
1175122 GATTC-TTTTCATTCCGATTTGATAT
63 GATTCATTCTCATTCTGATTTGACAC
* * * **** * **
1175147 ATGGTGACCACCCTTGTCAAATCCACCTC-CTTCTTGTCTAACG--T-GTTA-GATTCT--T---
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTC-TGTCTAACGTATGGTTACCACCCTGGTAGA
1175202 TTCATT-TCAATT-TGA--TG---C
65 TTCATTCTC-ATTCTGATTTGACAC
* * *
1175220 ATGGTTACCACCATGGTCAAATTTGTCTCTC-TCTTGTTTAACGTATGGTTACCACCCTGGTCAG
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTC-TGTCTAACGTATGGTTACCACCCTGGT-AG
* * **
1175284 ATAC-TTTTCATTCTGATTTGACGT
64 ATTCATTCTCATTCTGATTTGACAC
* * * * * * * * *
1175308 ATGGTTACCACCTTGGTCAAGTCTT-TCTCTCTCCTATCTGACCTAGGGTTACCATCCTGGTCAG
1 ATGGTTACCACCCTGGTTAAAT-TTGTCTCTCTTCTGTCTAACGTATGGTTACCACCCTGGT-AG
* ** * ***
1175372 ATTC-TTTTTGTTCTTG-TTCGATGT
64 ATTCATTCTCATTC-TGATTTGACAC
* * * * * * * * * *
1175396 ATGGTTACAACCTTGGTCATATCTGTCTCACTTCTATCTGATGTATGGTTACCA-CCTTGTCAGA
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTCTAACGTATGGTTACCACCCTGGT-AGA
* * ** *
1175460 TT-TTTTTCATTCCCAATTGACAC
65 TTCATTCTCATTCTGATTTGACAC
** * * * *
1175483 ATGGTTACCACCCTAGCCT-AA-TTGTCACTTTTCTGTCTAACGTATGGTTACCACCATGGTGAA
1 ATGGTTACCACCCT-GGTTAAATTTGTCTCTCTTCTGTCTAACGTATGGTTACCACCCTGGT-AG
* * * *
1175546 ATTC-TTTTCGTTTTGATTT-AGCAT
64 ATTCATTCTCATTCTGATTTGA-CAC
* * * * * * * ** * * *
1175570 ATGGTTACCACCCTGGTCAAATCT-ACTTTTCTCCTATCTGATATATGGTTACAACCCTAGTCGG
1 ATGGTTACCACCCTGGTTAAATTTGTC-TCTCTTCTGTCTAACGTATGGTTACCACCCTGGT-AG
* * * * *
1175634 ATAC-TTTTCATTTTGATTTAACAT
64 ATTCATTCTCATTCTGATTTGACAC
* * * * * * *
1175658 ATGGTTACCACCCTAGTTAAA-CTCTCCCTTTTTTTGTCTAACATATGGTTACCACCCTGGTCAG
1 ATGGTTACCACCCTGGTTAAATTTGTCTC-TCTTCTGTCTAACGTATGGTTACCACCCTGGT-AG
1175722 ATTC
64 ATTC
1175726 TTTTTATTTC
Statistics
Matches: 616, Mismatches: 178, Indels: 97
0.69 0.20 0.11
Matches are distributed among these distances:
73 33 0.05
74 1 0.00
75 1 0.00
76 6 0.01
77 3 0.00
78 7 0.01
79 6 0.01
82 6 0.01
83 7 0.01
84 3 0.00
85 6 0.01
86 32 0.05
87 111 0.18
88 377 0.61
89 16 0.03
90 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTTAAATTTGTCTCTCTTCTGTCTAACGTATGGTTACCACCCTGGTAGAT
TCATTCTCATTCTGATTTGACAC
Found at i:1175308 original size:44 final size:44
Alignment explanation
Indices: 1175260--1175671 Score: 170
Period size: 44 Copynumber: 9.4 Consensus size: 44
1175250 CTCTTGTTTA
1175260 ACGTATGGTTACCACCCTGGTCAGATACTTTTCATTCTGATTTG
1 ACGTATGGTTACCACCCTGGTCAGATACTTTTCATTCTGATTTG
* *
1175304 ACGTATGGTTACCACCTTGGTCA-AGT-CTTTCTC-TCTCCT-ATCTG
1 ACGTATGGTTACCACCCTGGTCAGA-TACTTT-TCAT-T-CTGATTTG
* * * * ** *
1175348 ACCTAGGGTTACCATCCTGGTCAGATTCTTTTTGTTCTTG-TTCG
1 ACGTATGGTTACCACCCTGGTCAGATACTTTTCATTC-TGATTTG
* * * * * *
1175392 ATGTATGGTTACAACCTTGGTCATAT-CTGTCTCACTTCT-ATCTG
1 ACGTATGGTTACCACCCTGGTCAGATACT-TTTCA-TTCTGATTTG
* * ** ** *
1175436 ATGTATGGTTACCA-CCTTGTCAGATTTTTTTCATTCCCAATTG
1 ACGTATGGTTACCACCCTGGTCAGATACTTTTCATTCTGATTTG
** * * * * * *
1175479 ACACATGGTTACCACCCTAG-C--CTAATTGTCACTTTTCTG-TCTA
1 ACGTATGGTTACCACCCTGGTCAGATACTTTTCA---TTCTGATTTG
* * * * * *
1175522 ACGTATGGTTACCACCATGGTGAAATTCTTTTCGTTTTGATTT-
1 ACGTATGGTTACCACCCTGGTCAGATACTTTTCATTCTGATTTG
* * * *
1175565 AGCATATGGTTACCACCCTGGTCAAATCTACTTTTC-TCCT-ATCTG
1 A-CGTATGGTTACCACCCTGGTCAGA--TACTTTTCATTCTGATTTG
** * * * * *
1175610 ATATATGGTTACAACCCTAGTCGGATACTTTTCATTTTGATTTA
1 ACGTATGGTTACCACCCTGGTCAGATACTTTTCATTCTGATTTG
*
1175654 ACATATGGTTACCACCCT
1 ACGTATGGTTACCACCCT
1175672 AGTTAAACTC
Statistics
Matches: 267, Mismatches: 73, Indels: 56
0.67 0.18 0.14
Matches are distributed among these distances:
41 6 0.02
42 11 0.04
43 60 0.22
44 164 0.61
45 14 0.05
46 12 0.04
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.40
Consensus pattern (44 bp):
ACGTATGGTTACCACCCTGGTCAGATACTTTTCATTCTGATTTG
Found at i:1175672 original size:44 final size:44
Alignment explanation
Indices: 1175520--1175720 Score: 144
Period size: 44 Copynumber: 4.6 Consensus size: 44
1175510 CTTTTCTGTC
* * * * *
1175520 TAACGTATGGTTACCACCATGGTGAAA-TTCTTTTCGTTTTGATT
1 TAACATATGGTTACCACCCTAGTCAAACTACTTTTC-TTTTGATT
* * ** *
1175564 TAGCATATGGTTACCACCCTGGTCAAATCTACTTTTCTCCT-ATC
1 TAACATATGGTTACCACCCTAGTCAAA-CTACTTTTCTTTTGATT
* * * **
1175608 TGATATATGGTTACAACCCTAGTCGGA-TACTTTTCATTTTGATT
1 TAACATATGGTTACCACCCTAGTCAAACTACTTTTC-TTTTGATT
* *
1175652 TAACATATGGTTACCACCCTAGTTAAACT-CTCCCTTT-TTTTG-TC
1 TAACATATGGTTACCACCCTAGTCAAACTACT---TTTCTTTTGATT
*
1175696 TAACATATGGTTACCACCCTGGTCA
1 TAACATATGGTTACCACCCTAGTCA
1175721 GATTCTTTTT
Statistics
Matches: 122, Mismatches: 27, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
42 8 0.07
43 2 0.02
44 94 0.77
45 8 0.07
46 7 0.06
47 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (44 bp):
TAACATATGGTTACCACCCTAGTCAAACTACTTTTCTTTTGATT
Found at i:1175748 original size:44 final size:44
Alignment explanation
Indices: 1175263--1175750 Score: 142
Period size: 44 Copynumber: 11.1 Consensus size: 44
1175253 TTGTTTAACG
* * *
1175263 TATGGTTACCACCCTGGTCAGATACTTTTCA-TTCTGATTTGACG
1 TATGGTTACCACCCTGGTCAGATTCTTTTTATTTC-GATTTGACA
* * * * * * * *
1175307 TATGGTTACCACCTTGGTCA-AGTCTTTCTCTCTCCTATCTGACC
1 TATGGTTACCACCCTGGTCAGATTCTTTTTAT-TTCGATTTGACA
* * * * * **
1175351 TAGGGTTACCATCCTGGTCAGATTCTTTTTGTTCTTG-TTCGATG
1 TATGGTTACCACCCTGGTCAGATTCTTTTTATT-TCGATTTGACA
* * * * * * * * **
1175395 TATGGTTACAACCTTGGTCATA-TCTGTCTCACTTCTATCTGATG
1 TATGGTTACCACCCTGGTCAGATTCT-TTTTATTTCGATTTGACA
* * * *
1175439 TATGGTTACCA-CCTTGTCAGATT-TTTTTCATTCCCAATTGACA
1 TATGGTTACCACCCTGGTCAGATTCTTTTT-ATTTCGATTTGACA
* * * * *** * * *
1175482 CATGGTTACCACCCTAGCCTA-ATTGTCACT-TTTCTG-TCTAACG
1 TATGGTTACCACCCTGGTC-AGATTCTTTTTATTTC-GATTTGACA
* * * ** *
1175525 TATGGTTACCACCATGGTGAAATTCTTTTCGTTTTGATTT-AGCA
1 TATGGTTACCACCCTGGTCAGATTCTTTTTATTTCGATTTGA-CA
* * * * * *
1175569 TATGGTTACCACCCTGGTCA-AATCTACTTTT-CTCCTATCTGATA
1 TATGGTTACCACCCTGGTCAGATTCT--TTTTATTTCGATTTGACA
* * * * * * *
1175613 TATGGTTACAACCCTAGTCGGATACTTTTCATTTTGATTTAACA
1 TATGGTTACCACCCTGGTCAGATTCTTTTTATTTCGATTTGACA
* * * * * *
1175657 TATGGTTACCACCCTAGTTAAACTCTCCCTTTT-TTT-G-TCTAACA
1 TATGGTTACCACCCTGGTCAGA-T-T-CTTTTTATTTCGATTTGACA
*
1175701 TATGGTTACCACCCTGGTCAGATTCTTTTTATTTCGATTTGATA
1 TATGGTTACCACCCTGGTCAGATTCTTTTTATTTCGATTTGACA
1175745 TATGGT
1 TATGGT
1175751 GAGCAACCTG
Statistics
Matches: 305, Mismatches: 112, Indels: 54
0.65 0.24 0.11
Matches are distributed among these distances:
41 5 0.02
42 7 0.02
43 69 0.23
44 195 0.64
45 22 0.07
46 3 0.01
47 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (44 bp):
TATGGTTACCACCCTGGTCAGATTCTTTTTATTTCGATTTGACA
Found at i:1175887 original size:44 final size:44
Alignment explanation
Indices: 1175819--1176051 Score: 281
Period size: 44 Copynumber: 5.3 Consensus size: 44
1175809 TATTTAATGC
* * *
1175819 ATGGATACCACCCTAGTCAAATTTGTCTCTCTCTTGTCTAACGT
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTCTTGTCTAACGT
*
1175863 ATGGTTACCACCCTGGTTAAATTTGTCTCCCTCTTGTCTAACGT
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTCTTGTCTAACGT
*
1175907 ATGGTTACCACCCTGGTTAAATTTGTCTCCCTCTTGTCTAACGT
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTCTTGTCTAACGT
* * * * * **
1175951 ATGGTTACCACCCTGGTCAGATTTGTTTCAT-TC-CGTTTAGACAC
1 ATGGTTACCACCCTGGTTAAATTTGTCTC-TCTCTTGTCTA-ACGT
* * * *
1175995 ATGGTTACCACCCTGGTTAAATTTGTGTCTTTTTTGTCCAACGT
1 ATGGTTACCACCCTGGTTAAATTTGTCTCTCTCTTGTCTAACGT
*
1176039 ATGGTTTCCACCC
1 ATGGTTACCACCC
1176052 GTGTCTAATT
Statistics
Matches: 163, Mismatches: 22, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
43 5 0.03
44 155 0.95
45 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.38
Consensus pattern (44 bp):
ATGGTTACCACCCTGGTTAAATTTGTCTCTCTCTTGTCTAACGT
Found at i:1176087 original size:88 final size:88
Alignment explanation
Indices: 1175819--1176096 Score: 262
Period size: 88 Copynumber: 3.2 Consensus size: 88
1175809 TATTTAATGC
* * * * * * *
1175819 ATGGATACCACCCTAGTCAAATTTGTCTCTCTCTTGTCTAACGTATGGTTACCACCCTGGTTAAA
1 ATGGTTACCACCCTGGTTAAATTTGTCTCCCTCTTGTCCAACGTATGGTTACCACCCTGGTCAGA
* ** * *
1175884 TTTGTCTCCCTCTTGTCTA-ACGT
66 TTTGTTTCATTC-AGTTTAGACGT
*
1175907 ATGGTTACCACCCTGGTTAAATTTGTCTCCCTCTTGTCTAACGTATGGTTACCACCCTGGTCAGA
1 ATGGTTACCACCCTGGTTAAATTTGTCTCCCTCTTGTCCAACGTATGGTTACCACCCTGGTCAGA
* **
1175972 TTTGTTTCATTCCGTTTAGACAC
66 TTTGTTTCATTCAGTTTAGACGT
* ** * *
1175995 ATGGTTACCACCCTGGTTAAATTTGTGTCTTTTTTGTCCAACGTATGGTTTCCACCC-GTGTCTA
1 ATGGTTACCACCCTGGTTAAATTTGTCTCCCTCTTGTCCAACGTATGGTTACCACCCTG-GTC-A
1176059 -ATTCT-TCTT-ATTCAGATTT-GACGT
64 GATT-TGT-TTCATTCAG-TTTAGACGT
*
1176083 ATGGTTACTACCCT
1 ATGGTTACCACCCT
1176097 AGTCAAATCT
Statistics
Matches: 161, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
87 5 0.03
88 149 0.93
89 7 0.04
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.39
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTTAAATTTGTCTCCCTCTTGTCCAACGTATGGTTACCACCCTGGTCAGA
TTTGTTTCATTCAGTTTAGACGT
Found at i:1176192 original size:44 final size:45
Alignment explanation
Indices: 1176082--1176194 Score: 115
Period size: 46 Copynumber: 2.5 Consensus size: 45
1176072 AGATTTGACG
* *
1176082 TATGGTTACTACCCTAGTCAAATCTACTTTTCTCCTATCTGATATA
1 TATGGTTACAACCCTAGTCAAATCTACTTTTCT-CTATCTGATACA
* * * *
1176128 TATGGTTACAACCTTGGTCAAACTCTCCTCTTTCT-TGTCT-A-ACA
1 TATGGTTACAACCCTAGTCAAA-TCTACT-TTTCTCTATCTGATACA
*
1176172 TATGGTTACCACCCTAGTCAAAT
1 TATGGTTACAACCCTAGTCAAAT
1176195 TTCTTTCATT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.02
44 21 0.38
45 1 0.02
46 23 0.41
47 5 0.09
48 5 0.09
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (45 bp):
TATGGTTACAACCCTAGTCAAATCTACTTTTCTCTATCTGATACA
Found at i:1176725 original size:44 final size:44
Alignment explanation
Indices: 1176658--1176942 Score: 163
Period size: 44 Copynumber: 6.5 Consensus size: 44
1176648 GATTTGATGC
* *
1176658 ATGGTTACCACCCCGGTCGAATTTGTTTCTCTCTTGTCTAACAT
1 ATGGTTACCACCCTGGTCAAATTTGTTTCTCTCTTGTCTAACAT
* * * * * ***
1176702 ATGGTTACCACCCTAGTTAAATTTATCTCCCTCTTGTCTAGTGT
1 ATGGTTACCACCCTGGTCAAATTTGTTTCTCTCTTGTCTAACAT
* * *
1176746 ATGGTTGCCACCCTGGTCAAATTTGTTTCAT-TC-TGTTTAGACAC
1 ATGGTTACCACCCTGGTCAAATTTGTTTC-TCTCTTGTCTA-ACAT
* * * * * **
1176790 ATGGCTACCACCCTGGTTAAATTCGTGTCTCT-TCTGTCCAATGT
1 ATGGTTACCACCCTGGTCAAATTTGTTTCTCTCT-TGTCTAACAT
* * * * *
1176834 ATGGTTACCACCC-GTGTCAAATTCT-TCTTAT-TC-GGATTTGACGT
1 ATGGTTACCACCCTG-GTCAAATT-TGT-TTCTCTCTTG-TCTAACAT
* * * * *
1176878 ATCGTTACCACCATGGTCAAATCTGTGTT-TCTCTTATCTAATAT
1 ATGGTTACCACCCTGGTCAAATTTGT-TTCTCTCTTGTCTAACAT
*
1176922 ATGGTTACAACCCTGGTCAAA
1 ATGGTTACCACCCTGGTCAAA
1176943 CTCTCCTCTT
Statistics
Matches: 173, Mismatches: 54, Indels: 28
0.68 0.21 0.11
Matches are distributed among these distances:
43 10 0.06
44 156 0.90
45 7 0.04
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (44 bp):
ATGGTTACCACCCTGGTCAAATTTGTTTCTCTCTTGTCTAACAT
Found at i:1176835 original size:88 final size:87
Alignment explanation
Indices: 1176658--1176856 Score: 217
Period size: 88 Copynumber: 2.3 Consensus size: 87
1176648 GATTTGATGC
* * *
1176658 ATGGTTACCACCCCGGTCGAATTTGTTTCTCTCTTGTCTAACATATGGTTACCACCCTAGTTAAA
1 ATGGTTACCA-CCCGGTCAAATTTGTTTCTCTCTTGTCTAACACATGGCTACCACCCTAGTTAAA
* *
1176723 TTTATCTCCCTCTTGTCTAGTGT
65 TTTATCTCCCTCTTGTCCAATGT
* * *
1176746 ATGGTTGCCACCCTGGTCAAATTTGTTTCAT-TC-TGTTTAGACACATGGCTACCACCCTGGTTA
1 ATGGTTACCACCC-GGTCAAATTTGTTTC-TCTCTTGTCTA-ACACATGGCTACCACCCTAGTTA
* *
1176809 AATTCGTGTCT-CTTC-TGTCCAATGT
63 AATT--TATCTCCCTCTTGTCCAATGT
1176834 ATGGTTACCACCCGTGTCAAATT
1 ATGGTTACCACCCG-GTCAAATT
1176857 CTTCTTATTC
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
87 9 0.10
88 77 0.82
89 4 0.04
90 4 0.04
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.38
Consensus pattern (87 bp):
ATGGTTACCACCCGGTCAAATTTGTTTCTCTCTTGTCTAACACATGGCTACCACCCTAGTTAAAT
TTATCTCCCTCTTGTCCAATGT
Found at i:1177133 original size:44 final size:44
Alignment explanation
Indices: 1177083--1177200 Score: 109
Period size: 44 Copynumber: 2.7 Consensus size: 44
1177073 TTTGACGCAT
1177083 GGTTACCACCCTAGTCAAATTTGTCTTTCT-C-ATCTGAAACGTAA
1 GGTTACCACCCTAGTCAAATTTGTCTTTCTCCAATCTGAAAC--AA
* * * * * *
1177127 GGTTACCACCTTGGTCATATTT-T-TTTCATTCCAATTTGACACAC
1 GGTTACCACCCTAGTCAAATTTGTCTTTC--TCCAATCTGAAACAA
*
1177171 GGTTACCACCCTAGTTAAATTTGTCTTTCT
1 GGTTACCACCCTAGTCAAATTTGTCTTTCT
1177201 TCTGTCTAAC
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
42 4 0.07
43 1 0.02
44 40 0.69
45 2 0.03
46 11 0.19
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (44 bp):
GGTTACCACCCTAGTCAAATTTGTCTTTCTCCAATCTGAAACAA
Found at i:1177212 original size:88 final size:88
Alignment explanation
Indices: 1177057--1177453 Score: 299
Period size: 88 Copynumber: 4.5 Consensus size: 88
1177047 AACGTGTTAG
*** *
1177057 ATTCTTTTCATTTTGATTTGACGCATGGTTACCACCCTAGTCAAATTTGTC-TT-TCTC-ATCTG
1 ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATCT-
*
1177119 AAACGTAAGGTTACCACCTTGGTCA
65 -AACGTATGGTTACCACCTTGGTCA
* * * *
1177144 TATTTTTTTCATTCCAATTTGACACACGGTTACCACCCTAGTTAAATTTGTCTTTCT-TCTGTCT
1 -ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATCT
*
1177208 AACGTATGGTTACCACCTTGGTTGA
65 AACGTATGGTTACCACCTTGG-TCA
* ** *** * * *
1177233 ATTCTTCTCATTCTGATTTGATGTAAGGTTACCACCCTGGTCAAATCTG-CTTT-TCTCTTATCT
1 ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTC-TATCT
* * * * * * *
1177296 GATGTATGGTAACAACCCTAGTTA
65 AACGTATGGTTACCACCTTGGTCA
* * * * *
1177320 GATTCTTTTCATT-CAGATTTGACACATGGTTACCACCTTGGTTAAATTCGTCTCTCT-TCTATC
1 -ATTCTTTTCATTCCA-ATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATC
* *
1177383 TAATGTATGGTTACCACCTCGAG-CA
64 TAACGTATGGTTACCACCTTG-GTCA
* *** * *
1177408 GATTCTTTCCATTTTTATTTAACATATGGTTACCACCCTAGTCAAA
1 -ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAA
1177454 CTCCCCTCTT
Statistics
Matches: 241, Mismatches: 56, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
86 1 0.00
87 8 0.03
88 215 0.89
89 12 0.05
90 5 0.02
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (88 bp):
ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATCTA
ACGTATGGTTACCACCTTGGTCA
Found at i:1177479 original size:88 final size:87
Alignment explanation
Indices: 1177387--1177558 Score: 197
Period size: 88 Copynumber: 2.0 Consensus size: 87
1177377 TCTATCTAAT
* **
1177387 GTATGGTTACCACCTCGAG-CAGATTCTTTCCATTTTTATTTAACATATGGTT-ACCACCCTAGT
1 GTATGGTTACCACCTAG-GTCAGATTCTTTCCATTTCGATTTAACATAT-GTTGACCA-CCTAGT
* *
1177450 CAAACTCC-CCTCTTTCTTGTCTGAA
63 CAAA-TCCACCTCCTTCCTGTCTGAA
* * * * *
1177475 GTATGGTTACCTCCTAGGTTAGATTCTTTTCATTTCGATTTGATATATGTTGACCACCTAGTCAA
1 GTATGGTTACCACCTAGGTCAGATTCTTTCCATTTCGATTTAACATATGTTGACCACCTAGTCAA
1177540 ATCCACCTCCTTCCTGTCT
66 ATCCACCTCCTTCCTGTCT
1177559 AACGTGTAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
86 3 0.04
87 26 0.37
88 42 0.59
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.39
Consensus pattern (87 bp):
GTATGGTTACCACCTAGGTCAGATTCTTTCCATTTCGATTTAACATATGTTGACCACCTAGTCAA
ATCCACCTCCTTCCTGTCTGAA
Found at i:1177533 original size:176 final size:172
Alignment explanation
Indices: 1177055--1177790 Score: 478
Period size: 176 Copynumber: 4.3 Consensus size: 172
1177045 CTAACGTGTT
* * ** *
1177055 AGATTCTTTTCATTTTGATTTGACGCATGGTTACCACCCTAGTCAAAT-TTGTCTTTCTCATCTG
1 AGATTCTTTCCATTTTGATTTGACGTATGGTTACCACCCTAGTCAAATCTCCTCTTTCTTATCTG
* * * * * * * * *
1177119 AAACGTAAGGTTACCACCTTGGTCATATTTTTTTCATTCCAATTTGACACACGGTTACCACCCTA
66 -AA-GTATGGTTACC-CCTAGGTTAGATTCTTTTCATTTCGATTTGACACA-TGTTACCACCTTA
* * * * *
1177184 GTTAAATTTGTCTTTCTTCTGTCTAACGTATGGTTACCACCTTGGT
127 GTTAAATTCGTCTCTCTTCTATCTAACGTATGGTTACCACCTCGGC
* * * * * * *
1177230 TGAATTC-TTCTCATTCTGATTTGATGTAAGGTTACCACCCTGGTCAAATCTGCTTTTCTCTTAT
1 AG-ATTCTTTC-CATTTTGATTTGACGTATGGTTACCACCCTAGTCAAATCTCCTCTT-TCTTAT
* *
1177294 CTGATGTATGGTAACAACCCTA-GTTAGATTCTTTTCA-TTCAGATTTGACACATGGTTACCACC
63 CTGAAGTATGGTTAC--CCCTAGGTTAGATTCTTTTCATTTC-GATTTGACACAT-GTTACCACC
* *
1177357 TTGGTTAAATTCGTCTCTCTTCTATCTAATGTATGGTTACCACCTCGAGC
124 TTAGTTAAATTCGTCTCTCTTCTATCTAACGTATGGTTACCACCTCG-GC
* * * * *
1177407 AGATTCTTTCCATTTTTATTTAACATATGGTTACCACCCTAGTCAAACTCCCCTCTTTCTTGTCT
1 AGATTCTTTCCATTTTGATTTGACGTATGGTTACCACCCTAGTCAAA-TCTCCTCTTTCTTATCT
* *
1177472 GAAGTATGGTTACCTCCTAGGTTAGATTCTTTTCATTTCGATTTGATATATGTTGACCACC-TAG
65 GAAGTATGGTTACC-CCTAGGTTAGATTCTTTTCATTTCGATTTGACACATGTT-ACCACCTTAG
* * ** *
1177536 TCAAATCCACCTC-CTTCCTGTCTAACG--T-G-T---A-------
128 TTAAATTCGTCTCTCTT-CTATCTAACGTATGGTTACCACCTCGGC
* * * * * * * **
1177567 AGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCT-GCCAATTTTATGTCTTTCTTATCT
1 AGATTCTTTCCATTTTGATTTGACGTATGGTTACCACCCTAGTCAAATCT-CCTCTTTCTTATCT
* * *
1177631 -AACGTAAGGTTACCACCCTA-GTCAGAGTT-TTTTCATTTCGATTTGACACATGTTACCACCCT
65 GAA-GTATGGTTA-C-CCCTAGGTTAGA-TTCTTTTCATTTCGATTTGACACATGTTACCACCTT
* * * ** * * * *
1177693 AGTTAAATTTGTGTCTCTTTTGCCTAACGTATGGCTATCACCCTAGTC
126 AGTTAAATTCGTCTCTCTTCTATCTAACGTATGGTTACCA-CCTCGGC
* * * * *
1177741 AAATTC-TTCTCATTCTGATTTTACGTAGGGTTACCACCCTGGTCAAATCT
1 AGATTCTTTC-CATTTTGATTTGACGTATGGTTACCACCCTAGTCAAATCT
1177791 ACTTTTGTCC
Statistics
Matches: 432, Mismatches: 89, Indels: 80
0.72 0.15 0.13
Matches are distributed among these distances:
158 9 0.02
159 69 0.16
160 43 0.10
161 2 0.00
162 1 0.00
163 1 0.00
166 1 0.00
168 1 0.00
171 1 0.00
172 1 0.00
173 3 0.01
174 33 0.08
175 37 0.09
176 199 0.46
177 22 0.05
178 9 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (172 bp):
AGATTCTTTCCATTTTGATTTGACGTATGGTTACCACCCTAGTCAAATCTCCTCTTTCTTATCTG
AAGTATGGTTACCCCTAGGTTAGATTCTTTTCATTTCGATTTGACACATGTTACCACCTTAGTTA
AATTCGTCTCTCTTCTATCTAACGTATGGTTACCACCTCGGC
Found at i:1177754 original size:87 final size:88
Alignment explanation
Indices: 1177569--1177781 Score: 211
Period size: 87 Copynumber: 2.4 Consensus size: 88
1177559 AACGTGTAAG
** * *
1177569 ATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAAC
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
*
1177634 GTAAGGTTACCACCCTAGTCAGA
66 GTAAGGCTACCACCCTAGTCAGA
* ** * *
1177657 GTT-TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTT-TTGCCTA
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTA
* *
1177719 ACGTATGGCTATCACCCTAGTCA-A
64 ACGTAAGGCTACCACCCTAGTCAGA
* * ** *
1177743 ATTCTTCTCA-TTCTGATTTTACGTAGGGTTACCACCCTG
1 ATTCTTTTCATTTC-GATTTGACACATGGTTACCACCCTG
1177782 GTCAAATCTA
Statistics
Matches: 102, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
86 17 0.17
87 70 0.69
88 15 0.15
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
GTAAGGCTACCACCCTAGTCAGA
Found at i:1178155 original size:88 final size:88
Alignment explanation
Indices: 1178015--1179166 Score: 577
Period size: 88 Copynumber: 13.1 Consensus size: 88
1178005 AATTTGATGC
* * * * * * * *
1178015 ATGGTTACCACCCCGGCCAAATTTATCTC-C-CTCTTATCTAACGTACGATTACCACCTTGGTCA
1 ATGGTTACCACCCTGGTCAAATCT-TC-CACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
*
1178078 GATTTTTTTCATTCTGATTTAACAT
64 GATTTTTTTCATTCTGATTTGACAT
* * *
1178103 ATGATTACCACCTTGGTCAAATCTTCCACTCTCCTATCTGACCTATGGTTACCACCC-GAGTCAG
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTG-GTCAG
* * **
1178167 ATTCTTTTT-ATTTTGATTCGATGT
65 ATT-TTTTTCATTCTGATTTGACAT
* * ** * * *
1178191 ATGGTTACCACCAC-GATCAAATCTATCC-TTCTTTTACCTGATGTATGGTTACCACCCTGGTTA
1 ATGGTTACCACC-CTGGTCAAATCT-TCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
** * * *
1178254 GGGTCTTTTCATTTTGA-TTGACAA
64 GATTTTTTTCATTCTGATTTGACAT
* * * * * * * ** *
1178278 ATGGTTACCACCCTAGTCAAACTCTTTC-TTTTCTTGTCTGACGTACGGTTACCACCCTCATCAT
1 ATGGTTACCACCCTGGTCAAA-TCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAG
* **
1178342 A-TTTTTTCATTCCGATTTGATGT
65 ATTTTTTTCATTCTGATTTGACAT
** * * * * * * * * * *
1178365 GGGGTTACCAACCTAGTCAAATCTACCTCTCTCCTCTTTGATGTATGGTTACTACCTTGGTCAAA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
** * ** *
1178430 TTCATTTCATT-TGGAATAAACGT
66 TTTTTTTCATTCT-GATTTGACAT
* * * * * * * * *
1178453 ATGGTTACCATCTTGGTCAAATCTACCTCTCTCATGTCTGACGTACGGTTACCACCCTGTTCAAA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* **
1178518 TTTTTTTCATTCCT-ATTTAATGT
66 TTTTTTTCATT-CTGATTTGACAT
* * * ***
1178541 ATAGCTACCACCCTGGTCAAA--TT-CACT-TCCTTTTTTTCTGACGTATGGTTACCACCCTTAC
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCC----TATCTGACGTATGGTTACCACCCTGGT
* *
1178602 CAGATTTTTTTCATTTTGATTTAACAT
62 CAGATTTTTTTCATTCTGATTTGACAT
** * * * * *
1178629 ATGAATACCACCCTGGTCAAATCTACCAC-CTTCTTATCTAATGTATGGTTATCACCCTGGTCAG
1 ATGGTTACCACCCTGGTCAAATCTTCCACTC-TCCTATCTGACGTATGGTTACCACCCTGGTCAG
** * *
1178693 ATACTTTTCATTCTAATTTGACGT
65 ATTTTTTTCATTCTGATTTGACAT
* ** * * * **
1178717 ATGGTTACGACGTTGGTTAAATCTTCCTCTCTCCTATCTAACACATGGTTACCACCCTGGTCAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* *
1178782 TTCTTTTCATTCTGGTTTGACAT
66 TTTTTTTCATTCTGATTTGACAT
* * * * ** *
1178805 ATGGTTTCCACCCTGGTCATATCTGTCTCACT-T-CTATCTTATGTACAGTTACCACCTTGGTCA
1 ATGGTTACCACCCTGGTCAAATCT-TC-CACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
** *
1178868 GATTTTTTTCATTCCCATTTGACAC
64 GATTTTTTTCATTCTGATTTGACAT
* * * * * ** * *
1178893 ATGGTTACCACCCTAGTCAAAT-TTGTCACCCTTCTATCTAACGTATGGTTACCACCCAAGTGAA
1 ATGGTTACCACCCTGGTCAAATCTT-CCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAG
* * * * * *
1178957 ATTCTTTGT-GTTTTCATGT-AGCGT
65 ATT-TTTTTCATTCTGATTTGA-CAT
** * *** * * * ** * * *
1178981 ATGGTTACCACCCTACTCAAATCTACTTTTCACCAATTTGATATATGGTTACAACCCTAGTAAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
** * *
1179046 TACTTTTCATTTTGATTTAACAT
66 TTTTTTTCATTCTGATTTGACAT
* * * * * *
1179069 ATGGTTACCACCCTGGTCAAA-C-TCTCATCTTTCTTGTCTAACGTATGGTTACCACCATGGACA
1 ATGGTTACCACCCTGGTCAAATCTTC-CA-CTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
* * *
1179132 GATTCTTTTCATTCTGATTTTATAT
64 GATTTTTTTCATTCTGATTTGACAT
*
1179157 ATGGTGACCA
1 ATGGTTACCA
1179167 TGCTCAAATC
Statistics
Matches: 789, Mismatches: 236, Indels: 78
0.72 0.21 0.07
Matches are distributed among these distances:
84 2 0.00
85 3 0.00
86 23 0.03
87 111 0.14
88 621 0.79
89 19 0.02
90 5 0.01
91 3 0.00
92 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
TTTTTTTCATTCTGATTTGACAT
Found at i:1178809 original size:44 final size:43
Alignment explanation
Indices: 1178499--1179166 Score: 181
Period size: 44 Copynumber: 15.2 Consensus size: 43
1178489 TCTGACGTAC
* * * * **
1178499 GGTTACCACCCTGTTCAAATTTTTTTCATTCCTATTTAATGTAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATT-CTATTTGACATAT
* * * ** * * * *
1178543 AGCTACCACCCTGGTCAAATTCACTTCCTTTTTTTCTGACGTAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTCTATT-TGACATAT
*** * * *
1178587 GGTTACCACCCTTACCAGATTTTTTTCATTTTGATTTAACATAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTCT-ATTTGACATAT
** * ** * * **
1178631 GAATACCACCCTGGTCA-AATC-TACCACCTTCTTATCTAATGTAT
1 GGTTACCACCCTGGTCAGATTCTTTTCA--TTC-TATTTGACATAT
* * *
1178675 GGTTATCACCCTGGTCAGATACTTTTCATTCTAATTTGACGTAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTCT-ATTTGACATAT
* ** * * * * * *
1178719 GGTTACGACGTTGGTTA-AATCTTCCTCTC-TCCTATCTAACACAT
1 GGTTACCACCCTGGTCAGATTCTT--T-TCATTCTATTTGACATAT
*
1178763 GGTTACCACCCTGGTCAGATTCTTTTCATTCTGGTTTGACATAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTCT-ATTTGACATAT
* * * ** *
1178807 GGTTTCCACCCTGGTCATA-TCTGTCTCACTTCTATCTT-ATGTAC
1 GGTTACCACCCTGGTCAGATTCT-TTTCA-TTCTAT-TTGACATAT
* * * * *
1178851 AGTTACCACCTTGGTCAGATTTTTTTCATTCCCATTTGACACAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATT-CTATTTGACATAT
* * * * * *
1178895 GGTTACCACCCTAGTCA-AAT-TTGTCACCCTTCTATCTAACGTAT
1 GGTTACCACCCTGGTCAGATTCTTTTCA---TTCTATTTGACATAT
** * * * * * *
1178939 GGTTACCACCCAAGTGAAATTCTTTGT-GTTTTCATGT-AGCGTAT
1 GGTTACCACCCTGGTCAGATTCTTT-TCATTCT-ATTTGA-CATAT
** * * * *
1178983 GGTTACCACCCTACTCAAATCTACTTTTCA-CCAATTTGATATAT
1 GGTTACCACCCTGGTCAGAT-T-CTTTTCATTCTATTTGACATAT
* * * * * *
1179027 GGTTACAACCCTAGTAAGATACTTTTCATTTTGATTTAACATAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTCT-ATTTGACATAT
* * ** * * *
1179071 GGTTACCACCCTGGTCAAACTCTCATCTTTCT-TGTCTAACGTAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTCTAT-T-TGACATAT
* * * *
1179115 GGTTACCACCATGGACAGATTCTTTTCATTCTGATTTTATATAT
1 GGTTACCACCCTGGTCAGATTCTTTTCATTCT-ATTTGACATAT
*
1179159 GGTGACCA
1 GGTTACCA
1179167 TGCTCAAATC
Statistics
Matches: 440, Mismatches: 146, Indels: 76
0.66 0.22 0.11
Matches are distributed among these distances:
42 18 0.04
43 28 0.06
44 351 0.80
45 30 0.07
46 12 0.03
47 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (43 bp):
GGTTACCACCCTGGTCAGATTCTTTTCATTCTATTTGACATAT
Found at i:1179290 original size:44 final size:44
Alignment explanation
Indices: 1179227--1179414 Score: 177
Period size: 44 Copynumber: 4.3 Consensus size: 44
1179217 GATTTGATGC
*
1179227 ATGGTTACCACCTAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* *
1179271 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * * * * *
1179315 ATGGTTACCAGCCTGGTCAGATTTGTTTCAT-TCCGTT-T-TGACAC
1 ATGGTTACCACCCAGGTCAAATTTGTCTC-TCT-C-TTGTCTAACAT
* * * * **
1179359 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCT-TGTCTAACAT
1179403 ATGGTTACCACC
1 ATGGTTACCACC
1179415 TGTGTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 2 0.02
44 109 0.93
45 2 0.02
46 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (44 bp):
ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
Found at i:1179443 original size:88 final size:88
Alignment explanation
Indices: 1179271--1179474 Score: 227
Period size: 88 Copynumber: 2.3 Consensus size: 88
1179261 TGTCTAACAT
* * * *
1179271 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACGTATGGTTACCAGCCTGGTCAGA
1 ATGGTTACCACCCTGGTCAAATTTGTGTCCCTCTTGTCCAACGTATGGTTACCAGCCTGGTCAAA
* *
1179336 TTTGTTTCATTCCGTTTTGACAC
66 TTTGTTTCATTCAGATTTGACAC
* * *
1179359 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGTATGGTTACCA-CCTGTGTCA
1 ATGGTTACCACCCTGGTCAAATTTGTGTCCCTCT-TGTCCAACGTATGGTTACCAGCCTG-GTCA
**
1179422 AATTCT-TCTT-ATTCAGATTTGACGT
64 AATT-TGT-TTCATTCAGATTTGACAC
* *
1179447 ATGGTTACCACCATGGTCAAATCTGTGT
1 ATGGTTACCACCCTGGTCAAATTTGTGT
1179475 TTCTCTTATC
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
87 5 0.05
88 90 0.92
89 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.38
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTCAAATTTGTGTCCCTCTTGTCCAACGTATGGTTACCAGCCTGGTCAAA
TTTGTTTCATTCAGATTTGACAC
Found at i:1179746 original size:422 final size:420
Alignment explanation
Indices: 1179063--1180140 Score: 1066
Period size: 422 Copynumber: 2.5 Consensus size: 420
1179053 CATTTTGATT
* *
1179063 TAACATATGGTTACCACCCTGGTCAAACTCTCATCTTTCTTGTCT-AACGTATGGTTACCACCAT
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAA-GTATGGTTACCTCCA-
* *
1179127 GGACAGATTCTTTTCA-TTCTGATTTTATATATGGTGACCA--TGCTCAAATCCACCTTCTTCCT
64 GGTCAGATTCTTTTCATTTC-GATTTTATATATGGTGACCACCTG-TCAAATCCACCTCCTTCCT
* * * *
1179189 GTCTAACGTGTCAGATTCTTTTCATTTTGATTTGATGCATGGTTACCA-CCTAGGTCAAATTTGT
127 GTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCT--GCCAAATTTAT
* * * * **
1179253 CTCTCTCTTGTCTAACATATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACGTATG
190 CTCTCTCTTATCTAACGTAAGGTTACCACCCAGGTCAAATTTGTCTCCATCTTGTCTAACACATG
* * * ** * * * *
1179318 GTTACCAGCCTGGTCAGATTTGT-T-TCATTCCGTTTTGACACATGGTTACCACCCTGGTTAAAT
255 GTTACCACCCTAGTCAAATTTGTGTCTC-TTCCG-CCTAACACATGGCTACCACCCTAGTCAAA-
* * * * *
1179381 TTGTGTCTC-TTCTG-TCCAATGTATGGTTACCA-CCTGTGTCAAATTCTTCTTAT-TCAGATTT
317 TTCT-TCTCATTCTGATCCAACGTAGGGTTACCACCCTG-GTCAAA-TCTACTTATGTCAGATCT
** *
1179442 GACGTATGGTTACCA-CCATGGTCAAATCTGTGTTTC-TCTT-ATC
379 GACGTATGG-TAAAAGCCATGGTCAAAT-TCT-TTTCGT-TTAATC
** * * *
1179485 TATTATATGGTTACAACCCTAGTCAAACTCCCCTCTTTCTTGTCTGAAGTATGGTTACCTCCTAG
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCC-AG
* * *
1179550 GTTAGATTCTTTTCATTTCGATTTGATATATGTTGACCACCTAGTCAAATCCACCTCCTTCCTGT
65 GTCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCT-GTCAAATCCACCTCCTTCCTGT
* *
1179615 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCT
129 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAAATTTATCTCT
* * * * * *
1179680 TTCTTATCTAACGTAAGGTTACCACCCTA-GTTAGAGTTT-T-TTCAT-TTCGATTTGACACAT-
194 CTCTTATCTAACGTAAGGTTACCACCC-AGGTCA-AATTTGTCTCCATCTT-G-TCTAACACATG
* * ** *
1179740 GTTACCACCCTAGTTAAATTTGTGTCTCTTCTGCCTAACGTATGGCTATCACCCTAGTCAAATTC
255 GTTACCACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTC
*** * ** *
1179805 TTCTCATTCTGATTTTACGTAGGGTTACCACCCTGGTCAAATCTACTTTTGTCCTATCTGGCGTA
320 TTCTCATTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTA
*** *
1179870 TGGTAAAAGCCATGGTTGGATTCTTTTCGTTTAAATT
385 TGGTAAAAGCCATGGTCAAATTCTTTTCGTTT-AATC
*
1179907 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGATGTATGGTTA-CTAACCA
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCT--CCA
* *
1179971 AGTCAGATT-TTCTTCATTCCG-TTTTATATATGGTGACCACCCTGGTCAAATCCACCTCCTTCC
64 GGTCAGATTCTT-TTCATTTCGATTTTATATATGGTGACCA-CCT-GTCAAATCCACCTCCTTCC
* * * *
1180034 TGTCTAACATGTTAGATTCTTTTAATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTAT
126 TGTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCA-CCCTGCCAAATTTAT
* * * **
1180099 CTCCCTCTTATCTAACGTACGATTACCACCTTGGTCAAATTT
190 CTCTCTCTTATCTAACGTAAGGTTACCACCCAGGTCAAATTT
1180141 TTTTCATTCT
Statistics
Matches: 540, Mismatches: 89, Indels: 54
0.79 0.13 0.08
Matches are distributed among these distances:
420 10 0.02
421 43 0.08
422 309 0.57
423 102 0.19
424 72 0.13
425 4 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (420 bp):
TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCCAGG
TCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCTGTCAAATCCACCTCCTTCCTGTCT
AACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAAATTTATCTCTCT
CTTATCTAACGTAAGGTTACCACCCAGGTCAAATTTGTCTCCATCTTGTCTAACACATGGTTACC
ACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTCTTCTCA
TTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTATGGTAA
AAGCCATGGTCAAATTCTTTTCGTTTAATC
Found at i:1179778 original size:87 final size:87
Alignment explanation
Indices: 1179631--1179797 Score: 203
Period size: 87 Copynumber: 1.9 Consensus size: 87
1179621 TGTAAGATTC
** * *
1179631 TTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAACGTAA
1 TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
*
1179696 GGTTACCACCCTAGTTAGAGTT
66 GGCTACCACCCTAGTTAGAGTT
** * *
1179718 TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTAACGT
1 TTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTAACGT
* *
1179781 ATGGCTATCACCCTAGT
64 AAGGCTACCACCCTAGT
1179798 CAAATTCTTC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
86 11 0.16
87 53 0.79
88 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (87 bp):
TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
GGCTACCACCCTAGTTAGAGTT
Found at i:1179812 original size:87 final size:88
Alignment explanation
Indices: 1179627--1179839 Score: 202
Period size: 87 Copynumber: 2.4 Consensus size: 88
1179617 AACGTGTAAG
** * *
1179627 ATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAAC
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
* *
1179692 GTAAGGTTACCACCCTAGTTAGA
66 GTAAGGCTACCACCCTAGTCAGA
* ** * *
1179715 GTT-TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTA
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTA
* *
1179777 ACGTATGGCTATCACCCTAGTCA-A
64 ACGTAAGGCTACCACCCTAGTCAGA
* * ** *
1179801 ATTCTTCTCA-TTCTGATTTTACGTAGGGTTACCACCCTG
1 ATTCTTTTCATTTC-GATTTGACACATGGTTACCACCCTG
1179840 GTCAAATCTA
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
86 17 0.17
87 68 0.67
88 16 0.16
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
GTAAGGCTACCACCCTAGTCAGA
Found at i:1180140 original size:44 final size:44
Alignment explanation
Indices: 1180090--1180182 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
1180080 CCACCCCGGC
* * *
1180090 CAAATTTATCTCCCTCTTATCTAACGTACGATTACCACCTTGGT
1 CAAATTTATCTCACTCTGATCTAACATACGATTACCACCTTGGT
* * * * *
1180134 CAAATTTTTTTCATTCTGATTTAACATATGATTACCACCTTGGT
1 CAAATTTATCTCACTCTGATCTAACATACGATTACCACCTTGGT
1180178 CAAAT
1 CAAAT
1180183 CTTCCACTCT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (44 bp):
CAAATTTATCTCACTCTGATCTAACATACGATTACCACCTTGGT
Found at i:1180213 original size:88 final size:88
Alignment explanation
Indices: 1180073--1181224 Score: 575
Period size: 88 Copynumber: 13.1 Consensus size: 88
1180063 GATTTGATGC
* * * * * * * *
1180073 ATGGTTACCACCCCGGCCAAATTTATCTC-C-CTCTTATCTAACGTACGATTACCACCTTGGTCA
1 ATGGTTACCACCCTGGTCAAATCT-TC-CACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
* *
1180136 AATTTTTTTCATTCTGATTTAACAT
64 GATTTTTTTCATTCTGATTTGACAT
* * * *
1180161 ATGATTACCACCTTGGTCAAATCTTCCACTCTCCTATCTGACCTATGGTTACCACCCTAGTCAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* * *
1180226 TTCTTTTT-ATTTTGATTCGATAT
66 TT-TTTTTCATTCTGATTTGACAT
* * ** * * *
1180249 ATGGTTACCACCAC-GATCAAATCTATCC-TTCTTTTACCTGATGTATGGTTACCACCCTGGTTA
1 ATGGTTACCACC-CTGGTCAAATCT-TCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
** * * *
1180312 GGGTCTTTTCATTTTGA-TTGACAA
64 GATTTTTTTCATTCTGATTTGACAT
* * * * * * * **
1180336 ATGGTTACCACCCTAGTCAAACTCTTTC-TTTTCTTGTCTGACGTACGGTTACCACCCTCATCAG
1 ATGGTTACCACCCTGGTCAAA-TCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAG
* **
1180400 A-TTTTTTCATTCCGATTTGATGT
65 ATTTTTTTCATTCTGATTTGACAT
** * * * * * * * * * *
1180423 GGGGTTACCAACCTAGTCAAATCTACCTCTCTCCTCTTTGATGTATGGTTACTACCTTGGTCAAA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
** * ** *
1180488 TTCATTTCATT-TGGAATAAACGT
66 TTTTTTTCATTCT-GATTTGACAT
* * * * * * * ** *
1180511 ATGGTTACCATCTTGGTCAAATCTACCTCTCTCATGTCTGACGTACGGTTACCACCCTATTCAAA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* **
1180576 TTTTTTTCATTCCT-ATTTAATGT
66 TTTTTTTCATT-CTGATTTGACAT
* * * ***
1180599 ATAGCTACCACCCTGGTCAAA--TT-CACT-TCCTTTTTTTCTGACGTATGGTTACCACCCTTAC
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCC----TATCTGACGTATGGTTACCACCCTGGT
* * * *
1180660 CATATTTTTTTCATTTTGATTTAACGT
62 CAGATTTTTTTCATTCTGATTTGACAT
** * * * * *
1180687 ATGAATACCACCCTGGTTAAATCTACCAC-CTTCTTATCTAACGTATGGTTATCACCCTGGTCAG
1 ATGGTTACCACCCTGGTCAAATCTTCCACTC-TCCTATCTGACGTATGGTTACCACCCTGGTCAG
** * *
1180751 ATACTTTTCATTCTAATTTGACGT
65 ATTTTTTTCATTCTGATTTGACAT
* * * * * **
1180775 ATGGTTACGACCTTGGTTAAATCTTCCTCTCTCCTATCTAACACATGGTTACCACCCTGGTCAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* *
1180840 TTCTTTTCATTCTGGTTTGACAT
66 TTTTTTTCATTCTGATTTGACAT
* * * * ** *
1180863 ATGGTTTCCACCCTGGTCATATCTGTCTCACT-T-CTATCTTATGTACAGTTACCACCTTGGTCA
1 ATGGTTACCACCCTGGTCAAATCT-TC-CACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
** *
1180926 GATTTTTTTCATTCCCATTTGACAC
64 GATTTTTTTCATTCTGATTTGACAT
* * * * * ** * *
1180951 ATGGTTACCACCCTAGTCAAAT-TTGTCACCCTTCTATCTAACGTATGGTTACCACCCAAGTGAA
1 ATGGTTACCACCCTGGTCAAATCTT-CCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAG
* * * * * *
1181015 ATTCTTTGT-GTTTTCATGT-AGCGT
65 ATT-TTTTTCATTCTGATTTGA-CAT
** * *** * * * ** * * *
1181039 ATGGTTACCACCCTACTCAAATCTACTTTTCACCAATTTGATATATGGTTACAACCCTAGTAAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
** * *
1181104 TACTTTTCATTTTGATTTAACAT
66 TTTTTTTCATTCTGATTTGACAT
* * * * * *
1181127 ATGGTTACCACCCTGGTCAAA-C-TCTCATCTTTCTTGTCTAACGTATGGTTACCACCATGGACA
1 ATGGTTACCACCCTGGTCAAATCTTC-CA-CTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
* * *
1181190 GATTCTTTTCATTCTGATTTTATAT
64 GATTTTTTTCATTCTGATTTGACAT
*
1181215 ATGGTGACCA
1 ATGGTTACCA
1181225 TGCTCAAATC
Statistics
Matches: 795, Mismatches: 232, Indels: 74
0.72 0.21 0.07
Matches are distributed among these distances:
84 2 0.00
85 3 0.00
86 23 0.03
87 112 0.14
88 627 0.79
89 18 0.02
90 5 0.01
91 3 0.00
92 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
TTTTTTTCATTCTGATTTGACAT
Found at i:1180252 original size:44 final size:44
Alignment explanation
Indices: 1180204--1180362 Score: 114
Period size: 44 Copynumber: 3.6 Consensus size: 44
1180194 CTATCTGACC
*
1180204 TATGGTTACCACCCTAGTCAGATTCTTTTTATTTTGATTCGATA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
* * * * *
1180248 TATGGTTACCACCACGA-TCA-AATCTATCCTTCTTTT-A-CCTGATG
1 TATGGTTACCACC-CTAGTCAGAATCT-T-TTTATTTTGATTC-GATA
* * ** * *
1180292 TATGGTTACCACCCTGGTTAGGGTCTTTTCATTTTGATT-GACA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
*
1180335 AATGGTTACCACCCTAGTCA-AACTCTTT
1 TATGGTTACCACCCTAGTCAGAA-TCTTT
1180363 CTTTTCTTGT
Statistics
Matches: 84, Mismatches: 22, Indels: 19
0.67 0.18 0.15
Matches are distributed among these distances:
43 35 0.42
44 38 0.45
45 11 0.13
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (44 bp):
TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
Found at i:1180775 original size:44 final size:42
Alignment explanation
Indices: 1180730--1180969 Score: 119
Period size: 44 Copynumber: 5.5 Consensus size: 42
1180720 TTATCTAACG
*
1180730 TATGGTTATCACCCTGGTCAGATACTTTTCATTCTAATTTGACG
1 TATGGTTATCACCCTGGTCAGAT-CTTTTCATTCT-ATTTGACA
* * * * * *
1180774 TATGGTTA-CGACCTTGGTTAAATCTTCCTCTC-TCCTATCTAACA
1 TATGGTTATC-ACCCTGGTCAGATCTT--T-TCATTCTATTTGACA
* * *
1180818 CATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGGTTTGACA
1 TATGGTTATCACCCTGGTCAGA-TCTTTTCATTCT-ATTTGACA
* * **
1180862 TATGGTT-TCCACCCTGGTCATATCTGTCTCACTTCTATCTT-ATG
1 TATGGTTAT-CACCCTGGTCAGATCT-TTTCA-TTCTAT-TTGACA
** * * * *
1180906 TACAGTTACCACCTTGGTCAGATTTTTTTCATTCCCATTTGACA
1 TATGGTTATCACCCTGGTCAGA-TCTTTTCATT-CTATTTGACA
* * *
1180950 CATGGTTACCACCCTAGTCA
1 TATGGTTATCACCCTGGTCA
1180970 AATTTGTCAC
Statistics
Matches: 143, Mismatches: 37, Indels: 32
0.67 0.17 0.15
Matches are distributed among these distances:
42 2 0.01
43 15 0.10
44 107 0.75
45 17 0.12
46 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (42 bp):
TATGGTTATCACCCTGGTCAGATCTTTTCATTCTATTTGACA
Found at i:1181348 original size:44 final size:44
Alignment explanation
Indices: 1181285--1181472 Score: 168
Period size: 44 Copynumber: 4.3 Consensus size: 44
1181275 GATTTGATGC
*
1181285 ATGGTTACCAGCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * *
1181329 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCCTGTCTAACGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * * * * *
1181373 ATGGTTACCAGCCTGGTCAGATTTGTTTCAT-TCCGTT-T-TGACAC
1 ATGGTTACCACCCAGGTCAAATTTGTCTC-TCT-C-TTGTCTAACAT
* * * * **
1181417 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCT-TGTCTAACAT
1181461 ATGGTTACCACC
1 ATGGTTACCACC
1181473 TGTGTCAAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 2 0.02
44 108 0.94
45 2 0.02
46 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (44 bp):
ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
Found at i:1181501 original size:88 final size:88
Alignment explanation
Indices: 1181285--1181532 Score: 236
Period size: 88 Copynumber: 2.8 Consensus size: 88
1181275 GATTTGATGC
* * * * * * *
1181285 ATGGTTACCAGCCAGGTCAAATTTGTCTC-TCTCTTG-TCTAACATATGGTTACCACCCAGGTCA
1 ATGGTTACCAGCCTGGTCAAATTTGTTTCAT-TC-AGATTTGACACATGGTTACCACCCTGGTCA
* *
1181348 AATTTGTCTCCCTCCTGTCTAACGT
64 AATTTGTGTCCCTCCTGTCCAACGT
* * * *
1181373 ATGGTTACCAGCCTGGTCAGATTTGTTTCATTCCGTTTTGACACATGGTTACCACCCTGGTTAAA
1 ATGGTTACCAGCCTGGTCAAATTTGTTTCATTCAGATTTGACACATGGTTACCACCCTGGTCAAA
* * *
1181438 TTTGTGTCTCTTCTGTCCAATGT
66 TTTGTGTCCCTCCTGTCCAACGT
** *
1181461 ATGGTTACCA-CCTGTGTCAAATTCT-TCTT-ATTCAGATTTGACGTATGGTTACCACCATGGTC
1 ATGGTTACCAGCCTG-GTCAAATT-TGT-TTCATTCAGATTTGACACATGGTTACCACCCTGGTC
*
1181523 AAATCTGTGT
63 AAATTTGTGT
1181533 TTCTCTTATC
Statistics
Matches: 133, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
87 5 0.04
88 124 0.93
89 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (88 bp):
ATGGTTACCAGCCTGGTCAAATTTGTTTCATTCAGATTTGACACATGGTTACCACCCTGGTCAAA
TTTGTGTCCCTCCTGTCCAACGT
Found at i:1181804 original size:422 final size:421
Alignment explanation
Indices: 1181121--1182207 Score: 1082
Period size: 422 Copynumber: 2.6 Consensus size: 421
1181111 CATTTTGATT
* *
1181121 TAACATATGGTTACCACCCTGGTCAAACTCTCATCTTTCTTGTCT-AACGTATGGTTACCACCAT
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAA-GTATGGTTACCTCCA-
* *
1181185 GGACAGATTCTTTTCA-TTCTGATTTTATATATGGTGACCA--TGCTCAAATCCACCTTCTTCCT
64 GGTCAGATTCTTTTCATTTC-GATTTTATATATGGTGACCACCTG-TCAAATCCACCTCCTTCCT
* * * * * * *
1181247 ATCTAACGTGTCAGATTCTTTTCATTTTGATTTGATGCATGGTTACCAGCCAGGTCAAATTTGTC
127 GTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATC
* * * * ** **
1181312 TCTCTCTTGTCTAACATATGGTTACCACCC-AGGTCA-AATTTGTCTCCCTCCTGTCTAACGTAT
192 TCTCTCTTATCTAACGTAAGGTTACCACCCTA-GTCAGAATTT-TTTCATTCCTGTCTAACACAT
* * * ** * * * *
1181375 GGTTACCAGCCTGGTCAGATTTGT-T-TCATTCCGTTTTGACACATGGTTACCACCCTGGTTAAA
255 GGTTACCACCCTAGTCAAATTTGTGTCTC-TTCCG-CCTAACACATGGCTACCACCCTAGTCAAA
* * * * *
1181438 TTTGTGTCTC-TTCTG-TCCAATGTATGGTTACCA-CCTGTGTCAAATTCTTCTTAT-TCAGATT
318 -TTCT-TCTCATTCTGATCCAACGTAGGGTTACCACCCTG-GTCAAA-TCTACTTATGTCAGATC
** *
1181499 TGACGTATGGTTACCA-CCATGGTCAAATCTGTGTTTC-TCTT-ATC
379 TGACGTATGG-TAAAAGCCATGGTCAAAT-TCT-TTTCGT-TTAATC
* * * *
1181543 TAATATATGGTTACAACCCTAGTCAAACTCCCCTCTTTCTTGTCTGAAGTATGGTTACCTCCTAG
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCC-AG
* * *
1181608 GTTAGATTCTTTTCATTTCGATTTGATATATGTTGACCACCTAGTCAAATCCACCTCCTTCCTGT
65 GTCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCT-GTCAAATCCACCTCCTTCCTGT
* * *
1181673 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCA-CCCTGCCAATTTTATGTC
129 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATCTC
* * * * * *
1181737 TTTCTTATCTAACGTAAGGTTACCACCCTAGTTAGAGTTTTTTCATTTC-GATTTGACACAT-GT
194 TCTCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTCCTG-TCTAACACATGGT
* * ** *
1181800 TACCACCCTAGTTAAATTTGTGTCTCTTCTGCCTAACGTATGGCTATCACCCTAGTCAAATTCTT
258 TACCACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTCTT
*** * ** *
1181865 CTCATTCTGATTTTACGTAGGGTTACCACCCTGGTCAAATCTACTTTTGTCCTATCTGGCGTATG
323 CTCATTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTATG
** *
1181930 GTAAAAGCCATGGTCGGATTCTTTTCGTTTAAATT
388 GTAAAAGCCATGGTCAAATTCTTTTCGTTT-AATC
*
1181965 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGACGTATGGTTA-CTAACCA
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCT--CCA
* *
1182029 AGTCAGATT-TTCTTCATTCCG-TTTTATATATGGTGACCACCCTGGTCAAATCCACCTCCTTCC
64 GGTCAGATTCTT-TTCATTTCGATTTTATATATGGTGACCA-CCT-GTCAAATCCACCTCCTTCC
* * *
1182092 TGTCTAACATGTTAGATTCTTTTAATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTAT
126 TGTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTAT
* * * * * * *
1182157 CTCCCTCTTATCTAATGTACGATTACCACCTTGGTCAGATTTTTTTCATTC
191 CTCTCTCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTC
1182208 TAATTTAACA
Statistics
Matches: 548, Mismatches: 93, Indels: 47
0.80 0.14 0.07
Matches are distributed among these distances:
420 10 0.02
421 41 0.07
422 305 0.56
423 120 0.22
424 71 0.13
425 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (421 bp):
TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCCAGG
TCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCTGTCAAATCCACCTCCTTCCTGTCT
AACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATCTCTC
TCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTCCTGTCTAACACATGGTTAC
CACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTCTTCTC
ATTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTATGGTA
AAAGCCATGGTCAAATTCTTTTCGTTTAATC
Found at i:1181836 original size:87 final size:87
Alignment explanation
Indices: 1181689--1181855 Score: 203
Period size: 87 Copynumber: 1.9 Consensus size: 87
1181679 TGTAAGATTC
** * *
1181689 TTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAACGTAA
1 TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
*
1181754 GGTTACCACCCTAGTTAGAGTT
66 GGCTACCACCCTAGTTAGAGTT
** * *
1181776 TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTAACGT
1 TTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTAACGT
* *
1181839 ATGGCTATCACCCTAGT
64 AAGGCTACCACCCTAGT
1181856 CAAATTCTTC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
86 11 0.16
87 53 0.79
88 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (87 bp):
TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
GGCTACCACCCTAGTTAGAGTT
Found at i:1181870 original size:87 final size:88
Alignment explanation
Indices: 1181685--1181897 Score: 202
Period size: 87 Copynumber: 2.4 Consensus size: 88
1181675 AACGTGTAAG
** * *
1181685 ATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAAC
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
* *
1181750 GTAAGGTTACCACCCTAGTTAGA
66 GTAAGGCTACCACCCTAGTCAGA
* ** * *
1181773 GTT-TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTA
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTA
* *
1181835 ACGTATGGCTATCACCCTAGTCA-A
64 ACGTAAGGCTACCACCCTAGTCAGA
* * ** *
1181859 ATTCTTCTCA-TTCTGATTTTACGTAGGGTTACCACCCTG
1 ATTCTTTTCATTTC-GATTTGACACATGGTTACCACCCTG
1181898 GTCAAATCTA
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
86 17 0.17
87 68 0.67
88 16 0.16
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
GTAAGGCTACCACCCTAGTCAGA
Found at i:1182257 original size:88 final size:88
Alignment explanation
Indices: 1182179--1183282 Score: 585
Period size: 88 Copynumber: 12.6 Consensus size: 88
1182169 TAATGTACGA
* * * * *
1182179 TTACCACCTTGGTCAGATTTTTTTCATTCTAATTTAACATATGATTACCACCTTGGTCAAATCTT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
*
1182244 CCACTCTCCTATCTGACCTATGG
66 CCACTCTCCTATCTGACGTATGG
* * * * *
1182267 TTACCACCCTAGTCAGATTCTTTTT-ATTTTGATTCGATATATGGTTACCACCAC-GATCAAATC
1 TTACCACCCTGGTCAGATT-TTTTTCATTCTGATTTGACATATGGTTACCACC-CTGGTCAAATC
* ** * *
1182330 TATCC-TTCTTTTACCTGATGTATGG
64 T-TCCACTCTCCTATCTGACGTATGG
* ** * * * *
1182355 TTACCACCCTGGTTAGGGTCTTTTCATTTTGA-TTGACAAATGGTTACCACCCTAGTCAAACTCT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAA-TCT
* * * * * *
1182419 TTC-TTTTCTTGTCTGACGTACGG
65 TCCACTCTCCTATCTGACGTATGG
** * ** ** * * *
1182442 TTACCACCCTCATCAGA-TTTTTTCATTCCGATTTGATGTGGGGTTACCAACCTAGTCAAATCTA
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * * *
1182506 CCTCTCTCCTCTTTGATGTATGG
66 CCACTCTCCTATCTGACGTATGG
* * * ** * ** * * *
1182529 TTACTACCTTGGTCAAATTCATTTCATT-TGGAATAAACGTATGGTTACCATCTTGGTCAAATCT
1 TTACCACCCTGGTCAGATTTTTTTCATTCT-GATTTGACATATGGTTACCACCCTGGTCAAATCT
* * * * *
1182593 ACCTCTCTCATGTCTGACGTACGG
65 TCCACTCTCCTATCTGACGTATGG
* * * ** * *
1182617 TTACCACCCTGTTCAAATTTTTTTCATTCCT-ATTTAATGTATAGCTACCACCCTGGTCAAA--T
1 TTACCACCCTGGTCAGATTTTTTTCATT-CTGATTTGACATATGGTTACCACCCTGGTCAAATCT
*
1182679 T-CACT-TCCTTTTTTTCTGACGTATGG
65 TCCACTCTCC----TATCTGACGTATGG
*** * * * * ** *
1182705 TTACCACCCTTACCATATTTTTTTCATTTTGATTTAACGTATGAATACCACCCTGGTCAAATCTA
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* *
1182770 CCAC-CTTCTTATCTAACGTATGG
66 CCACTC-TCCTATCTGACGTATGG
* ** * * * * *
1182793 TTATCACCCTGGTCAGATACTTTTCATTCTAATTTGACGTATGGTTACGACCTTGGTTAAATCTT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * **
1182858 CCTCTCTCCTATCTAACACATGG
66 CCACTCTCCTATCTGACGTATGG
* * *
1182881 TTACCACCCTGGTCAGATTCTTTTCATTCTGGTTTGACATATGGATT-CCACCCTGGTCATATCT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGG-TTACCACCCTGGTCAAATCT
* * **
1182945 GTCTCACT-T-CTATCTTATGTACAG
65 -TC-CACTCTCCTATCTGACGTATGG
* ** * *
1182969 TTACCACCTTGGTCAGATTTTTTTCATTCCCATTTGACACATGGTTACCACCCTAGTCAAAT-TT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * * *
1183033 GTCACCCTTCTATCTAACGTATGG
66 -CCACTCTCCTATCTGACGTATGG
** * * * * * * * * **
1183057 TTACCACCCAAGTGAAATTCTTTGT-GTTTTCATGT-AGCGTATGGTTACCACCCTACTCAAATC
1 TTACCACCCTGGTCAGATT-TTTTTCATTCTGATTTGA-CATATGGTTACCACCCTGGTCAAATC
* *** * * * **
1183120 TACTTTTCACCAATTTGATATATGG
64 TTCCACTCTCCTATCTGACGTATGG
* * * ** * *
1183145 TTACAACCCTAGTAAGATACTTTTCATTTTGATTTAACATATGGTTACCACCCTGGTCAAA-C-T
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * * *
1183208 CTCATCTTTCTTGTCTAACGTATGG
66 C-CA-CTCTCCTATCTGACGTATGG
* * * * * *
1183233 TTACCACCATGGACAGATTCTTTTCATTCTGATTTTATATATGGTGACCA
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCA
1183283 TGCTCAAATC
Statistics
Matches: 760, Mismatches: 219, Indels: 74
0.72 0.21 0.07
Matches are distributed among these distances:
84 2 0.00
85 3 0.00
86 22 0.03
87 111 0.15
88 592 0.78
89 20 0.03
90 5 0.01
91 3 0.00
92 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (88 bp):
TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
CCACTCTCCTATCTGACGTATGG
Found at i:1182310 original size:44 final size:44
Alignment explanation
Indices: 1182262--1182420 Score: 114
Period size: 44 Copynumber: 3.6 Consensus size: 44
1182252 CTATCTGACC
*
1182262 TATGGTTACCACCCTAGTCAGATTCTTTTTATTTTGATTCGATA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
* * * * *
1182306 TATGGTTACCACCACGA-TCA-AATCTATCCTTCTTTT-A-CCTGATG
1 TATGGTTACCACC-CTAGTCAGAATCT-T-TTTATTTTGATTC-GATA
* * ** * *
1182350 TATGGTTACCACCCTGGTTAGGGTCTTTTCATTTTGATT-GACA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
*
1182393 AATGGTTACCACCCTAGTCA-AACTCTTT
1 TATGGTTACCACCCTAGTCAGAA-TCTTT
1182421 CTTTTCTTGT
Statistics
Matches: 84, Mismatches: 22, Indels: 19
0.67 0.18 0.15
Matches are distributed among these distances:
43 35 0.42
44 38 0.45
45 11 0.13
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (44 bp):
TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
Found at i:1183406 original size:44 final size:44
Alignment explanation
Indices: 1183343--1183530 Score: 168
Period size: 44 Copynumber: 4.3 Consensus size: 44
1183333 GATTTGATGC
*
1183343 ATGGTTACCAGCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * *
1183387 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCCTGTCTAACGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * * * * *
1183431 ATGGTTACCAGCCTGGTCAGATTTGTTTCAT-TCCGTT-T-TGACAC
1 ATGGTTACCACCCAGGTCAAATTTGTCTC-TCT-C-TTGTCTAACAT
* * * * **
1183475 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCT-TGTCTAACAT
1183519 ATGGTTACCACC
1 ATGGTTACCACC
1183531 TGTGTCAAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 2 0.02
44 108 0.94
45 2 0.02
46 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (44 bp):
ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
Found at i:1183559 original size:88 final size:88
Alignment explanation
Indices: 1183343--1183590 Score: 236
Period size: 88 Copynumber: 2.8 Consensus size: 88
1183333 GATTTGATGC
* * * * * * *
1183343 ATGGTTACCAGCCAGGTCAAATTTGTCTC-TCTCTTG-TCTAACATATGGTTACCACCCAGGTCA
1 ATGGTTACCAGCCTGGTCAAATTTGTTTCAT-TC-AGATTTGACACATGGTTACCACCCTGGTCA
* *
1183406 AATTTGTCTCCCTCCTGTCTAACGT
64 AATTTGTGTCCCTCCTGTCCAACGT
* * * *
1183431 ATGGTTACCAGCCTGGTCAGATTTGTTTCATTCCGTTTTGACACATGGTTACCACCCTGGTTAAA
1 ATGGTTACCAGCCTGGTCAAATTTGTTTCATTCAGATTTGACACATGGTTACCACCCTGGTCAAA
* * *
1183496 TTTGTGTCTCTTCTGTCCAATGT
66 TTTGTGTCCCTCCTGTCCAACGT
** *
1183519 ATGGTTACCA-CCTGTGTCAAATTCT-TCTT-ATTCAGATTTGACGTATGGTTACCACCATGGTC
1 ATGGTTACCAGCCTG-GTCAAATT-TGT-TTCATTCAGATTTGACACATGGTTACCACCCTGGTC
*
1183581 AAATCTGTGT
63 AAATTTGTGT
1183591 TTCTCTTATC
Statistics
Matches: 133, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
87 5 0.04
88 124 0.93
89 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (88 bp):
ATGGTTACCAGCCTGGTCAAATTTGTTTCATTCAGATTTGACACATGGTTACCACCCTGGTCAAA
TTTGTGTCCCTCCTGTCCAACGT
Found at i:1183862 original size:422 final size:421
Alignment explanation
Indices: 1183179--1184265 Score: 1082
Period size: 422 Copynumber: 2.6 Consensus size: 421
1183169 CATTTTGATT
* *
1183179 TAACATATGGTTACCACCCTGGTCAAACTCTCATCTTTCTTGTCT-AACGTATGGTTACCACCAT
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAA-GTATGGTTACCTCCA-
* *
1183243 GGACAGATTCTTTTCA-TTCTGATTTTATATATGGTGACCA--TGCTCAAATCCACCTTCTTCCT
64 GGTCAGATTCTTTTCATTTC-GATTTTATATATGGTGACCACCTG-TCAAATCCACCTCCTTCCT
* * * * * * *
1183305 ATCTAACGTGTCAGATTCTTTTCATTTTGATTTGATGCATGGTTACCAGCCAGGTCAAATTTGTC
127 GTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATC
* * * * ** **
1183370 TCTCTCTTGTCTAACATATGGTTACCACCC-AGGTCA-AATTTGTCTCCCTCCTGTCTAACGTAT
192 TCTCTCTTATCTAACGTAAGGTTACCACCCTA-GTCAGAATTT-TTTCATTCCTGTCTAACACAT
* * * ** * * * *
1183433 GGTTACCAGCCTGGTCAGATTTGT-T-TCATTCCGTTTTGACACATGGTTACCACCCTGGTTAAA
255 GGTTACCACCCTAGTCAAATTTGTGTCTC-TTCCG-CCTAACACATGGCTACCACCCTAGTCAAA
* * * * *
1183496 TTTGTGTCTC-TTCTG-TCCAATGTATGGTTACCA-CCTGTGTCAAATTCTTCTTAT-TCAGATT
318 -TTCT-TCTCATTCTGATCCAACGTAGGGTTACCACCCTG-GTCAAA-TCTACTTATGTCAGATC
** *
1183557 TGACGTATGGTTACCA-CCATGGTCAAATCTGTGTTTC-TCTT-ATC
379 TGACGTATGG-TAAAAGCCATGGTCAAAT-TCT-TTTCGT-TTAATC
* * * *
1183601 TAATATATGGTTACAACCCTAGTCAAACTCCCCTCTTTCTTGTCTGAAGTATGGTTACCTCCTAG
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCC-AG
* * *
1183666 GTTAGATTCTTTTCATTTCGATTTGATATATGTTGACCACCTAGTCAAATCCACCTCCTTCCTGT
65 GTCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCT-GTCAAATCCACCTCCTTCCTGT
* * *
1183731 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCA-CCCTGCCAATTTTATGTC
129 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATCTC
* * * * * *
1183795 TTTCTTATCTAACGTAAGGTTACCACCCTAGTTAGAGTTTTTTCATTTC-GATTTGACACAT-GT
194 TCTCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTCCTG-TCTAACACATGGT
* * ** *
1183858 TACCACCCTAGTTAAATTTGTGTCTCTTCTGCCTAACGTATGGCTATCACCCTAGTCAAATTCTT
258 TACCACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTCTT
*** * ** *
1183923 CTCATTCTGATTTTACGTAGGGTTACCACCCTGGTCAAATCTACTTTTGTCCTATCTGGCGTATG
323 CTCATTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTATG
** *
1183988 GTAAAAGCCATGGTCGGATTCTTTTCGTTTAAATT
388 GTAAAAGCCATGGTCAAATTCTTTTCGTTT-AATC
*
1184023 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGACGTATGGTTA-CTAACCA
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCT--CCA
* *
1184087 AGTCAGATT-TTCTTCATTCCG-TTTTATATATGGTGACCACCCTGGTCAAATCCACCTCCTTCC
64 GGTCAGATTCTT-TTCATTTCGATTTTATATATGGTGACCA-CCT-GTCAAATCCACCTCCTTCC
* * *
1184150 TGTCTAACATGTTAGATTCTTTTAATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTAT
126 TGTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTAT
* * * * * * *
1184215 CTCCCTCTTATCTAATGTACGATTACCACCTTGGTCAGATTTTTTTCATTC
191 CTCTCTCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTC
1184266 TAATTTAACA
Statistics
Matches: 548, Mismatches: 93, Indels: 47
0.80 0.14 0.07
Matches are distributed among these distances:
420 10 0.02
421 41 0.07
422 305 0.56
423 120 0.22
424 71 0.13
425 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (421 bp):
TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCCAGG
TCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCTGTCAAATCCACCTCCTTCCTGTCT
AACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATCTCTC
TCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTCCTGTCTAACACATGGTTAC
CACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTCTTCTC
ATTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTATGGTA
AAAGCCATGGTCAAATTCTTTTCGTTTAATC
Found at i:1183894 original size:87 final size:87
Alignment explanation
Indices: 1183747--1183913 Score: 203
Period size: 87 Copynumber: 1.9 Consensus size: 87
1183737 TGTAAGATTC
** * *
1183747 TTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAACGTAA
1 TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
*
1183812 GGTTACCACCCTAGTTAGAGTT
66 GGCTACCACCCTAGTTAGAGTT
** * *
1183834 TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTAACGT
1 TTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTAACGT
* *
1183897 ATGGCTATCACCCTAGT
64 AAGGCTACCACCCTAGT
1183914 CAAATTCTTC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
86 11 0.16
87 53 0.79
88 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (87 bp):
TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
GGCTACCACCCTAGTTAGAGTT
Found at i:1183928 original size:87 final size:88
Alignment explanation
Indices: 1183743--1183955 Score: 202
Period size: 87 Copynumber: 2.4 Consensus size: 88
1183733 AACGTGTAAG
** * *
1183743 ATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAAC
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
* *
1183808 GTAAGGTTACCACCCTAGTTAGA
66 GTAAGGCTACCACCCTAGTCAGA
* ** * *
1183831 GTT-TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTA
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTA
* *
1183893 ACGTATGGCTATCACCCTAGTCA-A
64 ACGTAAGGCTACCACCCTAGTCAGA
* * ** *
1183917 ATTCTTCTCA-TTCTGATTTTACGTAGGGTTACCACCCTG
1 ATTCTTTTCATTTC-GATTTGACACATGGTTACCACCCTG
1183956 GTCAAATCTA
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
86 17 0.17
87 68 0.67
88 16 0.16
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
GTAAGGCTACCACCCTAGTCAGA
Found at i:1184315 original size:88 final size:88
Alignment explanation
Indices: 1184237--1185340 Score: 592
Period size: 88 Copynumber: 12.6 Consensus size: 88
1184227 TAATGTACGA
* * * * *
1184237 TTACCACCTTGGTCAGATTTTTTTCATTCTAATTTAACATATGATTACCACCTTGGTCAAATCTT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
*
1184302 CCACTCTCCTATCTGACCTATGG
66 CCACTCTCCTATCTGACGTATGG
* * * * *
1184325 TTACCACCCTAGTCAGATTCTTTTT-ATTTTGATTCGATATATGGTTACCACCAC-GATCAAATC
1 TTACCACCCTGGTCAGATT-TTTTTCATTCTGATTTGACATATGGTTACCACC-CTGGTCAAATC
* ** * *
1184388 TATCC-TTCTTTTACCTGATGTATGG
64 T-TCCACTCTCCTATCTGACGTATGG
* ** * * * *
1184413 TTACCACCCTGGTTAGGGTCTTTTCATTTTGA-TTGACAAATGGTTACCACCCTAGTCAAACTCT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAA-TCT
* * * * * *
1184477 TTC-TTTTCTTGTCTGACGTACGG
65 TCCACTCTCCTATCTGACGTATGG
** * ** ** * * *
1184500 TTACCACCCTCATCAGA-TTTTTTCATTCCGATTTGATGTGGGGTTACCAACCTAGTCAAATCTA
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * * *
1184564 CCTCTCTCCTCTTTGATGTATGG
66 CCACTCTCCTATCTGACGTATGG
* * * ** * ** * * *
1184587 TTACTACCTTGGTCAAATTCATTTCATT-TGGAATAAACGTATGGTTACCATCTTGGTCAAATCT
1 TTACCACCCTGGTCAGATTTTTTTCATTCT-GATTTGACATATGGTTACCACCCTGGTCAAATCT
* * * * *
1184651 ACCTCTCTCATGTCTGACGTACGG
65 TCCACTCTCCTATCTGACGTATGG
* * * ** * *
1184675 TTACCACCCTGTTCAAATTTTTTTCATTCCT-ATTTAATGTATAGCTACCACCCTGGTCAAA--T
1 TTACCACCCTGGTCAGATTTTTTTCATT-CTGATTTGACATATGGTTACCACCCTGGTCAAATCT
*
1184737 T-CACT-TCCTTTTTTTCTGACGTATGG
65 TCCACTCTCC----TATCTGACGTATGG
*** * * * * ** *
1184763 TTACCACCCTTACCATATTTTTTTCATTTTGATTTAACGTATGAATACCACCCTGGTCAAATCTA
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* *
1184828 CCAC-CTTCTTATCTAACGTATGG
66 CCACTC-TCCTATCTGACGTATGG
* ** * * * * *
1184851 TTATCACCCTGGTCAGATACTTTTCATTCTAATTTGACGTATGGTTACGACCTTGGTTAAATCTT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * **
1184916 CCTCTCTCCTATCTAACACATGG
66 CCACTCTCCTATCTGACGTATGG
* * * *
1184939 TTACCACCCTGGTCAGATTCTTTTCATTCTGGTTTGACATATGGTTTCCACCCTGGTCATATCTG
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCT-
* * **
1185004 TCTCACT-T-CTATCTTATGTACAG
65 TC-CACTCTCCTATCTGACGTATGG
* ** * *
1185027 TTACCACCTTGGTCAGATTTTTTTCATTCCCATTTGACACATGGTTACCACCCTAGTCAAAT-TT
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * * *
1185091 GTCACCCTTCTATCTAACGTATGG
66 -CCACTCTCCTATCTGACGTATGG
** * * * * * * * * **
1185115 TTACCACCCAAGTGAAATTCTTTGT-GTTTTCATGT-AGCGTATGGTTACCACCCTACTCAAATC
1 TTACCACCCTGGTCAGATT-TTTTTCATTCTGATTTGA-CATATGGTTACCACCCTGGTCAAATC
* *** * * * **
1185178 TACTTTTCACCAATTTGATATATGG
64 TTCCACTCTCCTATCTGACGTATGG
* * * ** * *
1185203 TTACAACCCTAGTAAGATACTTTTCATTTTGATTTAACATATGGTTACCACCCTGGTCAAA-C-T
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
* * * *
1185266 CTCATCTTTCTTGTCTAACGTATGG
66 C-CA-CTCTCCTATCTGACGTATGG
* * * * * *
1185291 TTACCACCATGGACAGATTCTTTTCATTCTGATTTTATATATGGTGACCA
1 TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCA
1185341 TGCTCAAATC
Statistics
Matches: 760, Mismatches: 221, Indels: 70
0.72 0.21 0.07
Matches are distributed among these distances:
84 2 0.00
85 3 0.00
86 22 0.03
87 109 0.14
88 596 0.78
89 18 0.02
90 5 0.01
91 3 0.00
92 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (88 bp):
TTACCACCCTGGTCAGATTTTTTTCATTCTGATTTGACATATGGTTACCACCCTGGTCAAATCTT
CCACTCTCCTATCTGACGTATGG
Found at i:1184368 original size:44 final size:44
Alignment explanation
Indices: 1184320--1184478 Score: 114
Period size: 44 Copynumber: 3.6 Consensus size: 44
1184310 CTATCTGACC
*
1184320 TATGGTTACCACCCTAGTCAGATTCTTTTTATTTTGATTCGATA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
* * * * *
1184364 TATGGTTACCACCACGA-TCA-AATCTATCCTTCTTTT-A-CCTGATG
1 TATGGTTACCACC-CTAGTCAGAATCT-T-TTTATTTTGATTC-GATA
* * ** * *
1184408 TATGGTTACCACCCTGGTTAGGGTCTTTTCATTTTGATT-GACA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
*
1184451 AATGGTTACCACCCTAGTCA-AACTCTTT
1 TATGGTTACCACCCTAGTCAGAA-TCTTT
1184479 CTTTTCTTGT
Statistics
Matches: 84, Mismatches: 22, Indels: 19
0.67 0.18 0.15
Matches are distributed among these distances:
43 35 0.42
44 38 0.45
45 11 0.13
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (44 bp):
TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
Found at i:1184891 original size:44 final size:42
Alignment explanation
Indices: 1184846--1185085 Score: 119
Period size: 44 Copynumber: 5.5 Consensus size: 42
1184836 TTATCTAACG
*
1184846 TATGGTTATCACCCTGGTCAGATACTTTTCATTCTAATTTGACG
1 TATGGTTATCACCCTGGTCAGAT-CTTTTCATTCT-ATTTGACA
* * * * * *
1184890 TATGGTTA-CGACCTTGGTTAAATCTTCCTCTC-TCCTATCTAACA
1 TATGGTTATC-ACCCTGGTCAGATCTT--T-TCATTCTATTTGACA
* * *
1184934 CATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGGTTTGACA
1 TATGGTTATCACCCTGGTCAGA-TCTTTTCATTCT-ATTTGACA
* * **
1184978 TATGGTT-TCCACCCTGGTCATATCTGTCTCACTTCTATCTT-ATG
1 TATGGTTAT-CACCCTGGTCAGATCT-TTTCA-TTCTAT-TTGACA
** * * * *
1185022 TACAGTTACCACCTTGGTCAGATTTTTTTCATTCCCATTTGACA
1 TATGGTTATCACCCTGGTCAGA-TCTTTTCATT-CTATTTGACA
* * *
1185066 CATGGTTACCACCCTAGTCA
1 TATGGTTATCACCCTGGTCA
1185086 AATTTGTCAC
Statistics
Matches: 143, Mismatches: 37, Indels: 32
0.67 0.17 0.15
Matches are distributed among these distances:
42 2 0.01
43 15 0.10
44 107 0.75
45 17 0.12
46 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (42 bp):
TATGGTTATCACCCTGGTCAGATCTTTTCATTCTATTTGACA
Found at i:1185464 original size:44 final size:44
Alignment explanation
Indices: 1185401--1185588 Score: 168
Period size: 44 Copynumber: 4.3 Consensus size: 44
1185391 GATTTGATGC
*
1185401 ATGGTTACCAGCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * *
1185445 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCCTGTCTAACGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * * * * *
1185489 ATGGTTACCAGCCTGGTCAGATTTGTTTCAT-TCCGTT-T-TGACAC
1 ATGGTTACCACCCAGGTCAAATTTGTCTC-TCT-C-TTGTCTAACAT
* * * * **
1185533 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCT-TGTCTAACAT
1185577 ATGGTTACCACC
1 ATGGTTACCACC
1185589 TGTGTCAAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 2 0.02
44 108 0.94
45 2 0.02
46 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (44 bp):
ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
Found at i:1185617 original size:88 final size:88
Alignment explanation
Indices: 1185401--1185648 Score: 236
Period size: 88 Copynumber: 2.8 Consensus size: 88
1185391 GATTTGATGC
* * * * * * *
1185401 ATGGTTACCAGCCAGGTCAAATTTGTCTC-TCTCTTG-TCTAACATATGGTTACCACCCAGGTCA
1 ATGGTTACCAGCCTGGTCAAATTTGTTTCAT-TC-AGATTTGACACATGGTTACCACCCTGGTCA
* *
1185464 AATTTGTCTCCCTCCTGTCTAACGT
64 AATTTGTGTCCCTCCTGTCCAACGT
* * * *
1185489 ATGGTTACCAGCCTGGTCAGATTTGTTTCATTCCGTTTTGACACATGGTTACCACCCTGGTTAAA
1 ATGGTTACCAGCCTGGTCAAATTTGTTTCATTCAGATTTGACACATGGTTACCACCCTGGTCAAA
* * *
1185554 TTTGTGTCTCTTCTGTCCAATGT
66 TTTGTGTCCCTCCTGTCCAACGT
** *
1185577 ATGGTTACCA-CCTGTGTCAAATTCT-TCTT-ATTCAGATTTGACGTATGGTTACCACCATGGTC
1 ATGGTTACCAGCCTG-GTCAAATT-TGT-TTCATTCAGATTTGACACATGGTTACCACCCTGGTC
*
1185639 AAATCTGTGT
63 AAATTTGTGT
1185649 TTCTCTTATC
Statistics
Matches: 133, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
87 5 0.04
88 124 0.93
89 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (88 bp):
ATGGTTACCAGCCTGGTCAAATTTGTTTCATTCAGATTTGACACATGGTTACCACCCTGGTCAAA
TTTGTGTCCCTCCTGTCCAACGT
Found at i:1185920 original size:422 final size:421
Alignment explanation
Indices: 1185237--1186323 Score: 1100
Period size: 422 Copynumber: 2.6 Consensus size: 421
1185227 CATTTTGATT
* *
1185237 TAACATATGGTTACCACCCTGGTCAAACTCTCATCTTTCTTGTCT-AACGTATGGTTACCACCAT
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAA-GTATGGTTACCTCCA-
* *
1185301 GGACAGATTCTTTTCA-TTCTGATTTTATATATGGTGACCA--TGCTCAAATCCACCTTCTTCCT
64 GGTCAGATTCTTTTCATTTC-GATTTTATATATGGTGACCACCTG-TCAAATCCACCTCCTTCCT
* * * * * * *
1185363 ATCTAACGTGTCAGATTCTTTTCATTTTGATTTGATGCATGGTTACCAGCCAGGTCAAATTTGTC
127 GTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATC
* * * * ** **
1185428 TCTCTCTTGTCTAACATATGGTTACCACCC-AGGTCA-AATTTGTCTCCCTCCTGTCTAACGTAT
192 TCTCTCTTATCTAACGTAAGGTTACCACCCTA-GTCAGAATTT-TTTCATTCCTGTCTAACACAT
* * * ** * * * *
1185491 GGTTACCAGCCTGGTCAGATTTGT-T-TCATTCCGTTTTGACACATGGTTACCACCCTGGTTAAA
255 GGTTACCACCCTAGTCAAATTTGTGTCTC-TTCCG-CCTAACACATGGCTACCACCCTAGTCAAA
* * * * *
1185554 TTTGTGTCTC-TTCTG-TCCAATGTATGGTTACCA-CCTGTGTCAAATTCTTCTTAT-TCAGATT
318 -TTCT-TCTCATTCTGATCCAACGTAGGGTTACCACCCTG-GTCAAA-TCTACTTATGTCAGATC
** *
1185615 TGACGTATGGTTACCA-CCATGGTCAAATCTGTGTTTC-TCTT-ATC
379 TGACGTATGG-TAAAAGCCATGGTCAAAT-TCT-TTTCGT-TTAATC
* * * *
1185659 TAATATATGGTTACAACCCTAGTCAAACTCCCCTCTTTCTTGTCTGAAGTATGGTTACCTCCTAG
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCC-AG
* * *
1185724 GTTAGATTCTTTTCATTTCGATTTGATATATGTTGACCACCTAGTCAAATCCACCTCCTTCCTGT
65 GTCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCT-GTCAAATCCACCTCCTTCCTGT
* * *
1185789 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCA-CCCTGCCAATTTTATGTC
129 CTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATCTC
* * * * * *
1185853 TTTCTTATCTAACGTAAGGTTACCACCCTAGTTAGAGTTTTTTCATTTC-GATTTGACACAT-GT
194 TCTCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTCCTG-TCTAACACATGGT
* * ** *
1185916 TACCACCCTAGTTAAATTTGTGTCTCTTCTGCCTAACGTATGGCTATCACCCTAGTCAAATTCTT
258 TACCACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTCTT
*** * ** *
1185981 CTCATTCTGATTTTACGTAGGGTTACCACCCTGGTCAAATCTACTTTTGTCCTATCTGGCGTATG
323 CTCATTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTATG
** *
1186046 GTAAAAGCCATGGTCGGATTCTTTTCGTTTAAATT
388 GTAAAAGCCATGGTCAAATTCTTTTCGTTT-AATC
*
1186081 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGACGTATGGTTA-CTAACCA
1 TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCT--CCA
*
1186145 AGTCAGATT-TTCTTCATTTCG-TTTTATATATGGTGACCACCCTGGTCAAATCCACCTCCTTCC
64 GGTCAGATTCTT-TTCATTTCGATTTTATATATGGTGACCA-CCT-GTCAAATCCACCTCCTTCC
* * *
1186208 TGTCTAACATGTTAGATTCTTTTAATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTAT
126 TGTCTAACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTAT
* * * * * *
1186273 CTCCCTCTTATCTAACGTACGATTACCACCTTGGTCAGATTTTTTTCATTC
191 CTCTCTCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTC
1186324 TAATTTAACA
Statistics
Matches: 550, Mismatches: 91, Indels: 47
0.80 0.13 0.07
Matches are distributed among these distances:
420 10 0.02
421 41 0.07
422 306 0.56
423 121 0.22
424 71 0.13
425 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (421 bp):
TAACATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCTTGTCTGAAGTATGGTTACCTCCAGG
TCAGATTCTTTTCATTTCGATTTTATATATGGTGACCACCTGTCAAATCCACCTCCTTCCTGTCT
AACGTGTAAGATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCCGGCCAAATTTATCTCTC
TCTTATCTAACGTAAGGTTACCACCCTAGTCAGAATTTTTTCATTCCTGTCTAACACATGGTTAC
CACCCTAGTCAAATTTGTGTCTCTTCCGCCTAACACATGGCTACCACCCTAGTCAAATTCTTCTC
ATTCTGATCCAACGTAGGGTTACCACCCTGGTCAAATCTACTTATGTCAGATCTGACGTATGGTA
AAAGCCATGGTCAAATTCTTTTCGTTTAATC
Found at i:1185952 original size:87 final size:87
Alignment explanation
Indices: 1185805--1185971 Score: 203
Period size: 87 Copynumber: 1.9 Consensus size: 87
1185795 TGTAAGATTC
** * *
1185805 TTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAACGTAA
1 TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
*
1185870 GGTTACCACCCTAGTTAGAGTT
66 GGCTACCACCCTAGTTAGAGTT
** * *
1185892 TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTAACGT
1 TTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTAACGT
* *
1185955 ATGGCTATCACCCTAGT
64 AAGGCTACCACCCTAGT
1185972 CAAATTCTTC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
86 11 0.16
87 53 0.79
88 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (87 bp):
TTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAACGTAA
GGCTACCACCCTAGTTAGAGTT
Found at i:1185986 original size:87 final size:88
Alignment explanation
Indices: 1185801--1186013 Score: 202
Period size: 87 Copynumber: 2.4 Consensus size: 88
1185791 AACGTGTAAG
** * *
1185801 ATTCTTTTCATTTCGATTTGATGCATGGTTACCACCCTGCCAATTTTATGTCTTTCTTATCTAAC
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
* *
1185866 GTAAGGTTACCACCCTAGTTAGA
66 GTAAGGCTACCACCCTAGTCAGA
* ** * *
1185889 GTT-TTTTCATTTCGATTTGACACAT-GTTACCACCCTAGTTAAATTTGTGTCTCTTC-TGCCTA
1 ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCT-GCCAAATTTATGTCT-TTCTTACCTA
* *
1185951 ACGTATGGCTATCACCCTAGTCA-A
64 ACGTAAGGCTACCACCCTAGTCAGA
* * ** *
1185975 ATTCTTCTCA-TTCTGATTTTACGTAGGGTTACCACCCTG
1 ATTCTTTTCATTTC-GATTTGACACATGGTTACCACCCTG
1186014 GTCAAATCTA
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
86 17 0.17
87 68 0.67
88 16 0.16
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (88 bp):
ATTCTTTTCATTTCGATTTGACACATGGTTACCACCCTGCCAAATTTATGTCTTTCTTACCTAAC
GTAAGGCTACCACCCTAGTCAGA
Found at i:1186373 original size:88 final size:88
Alignment explanation
Indices: 1186247--1187398 Score: 586
Period size: 88 Copynumber: 13.1 Consensus size: 88
1186237 GATTTGATGC
* * * * * * * *
1186247 ATGGTTACCACCCCGGCCAAATTTATCTC-C-CTCTTATCTAACGTACGATTACCACCTTGGTCA
1 ATGGTTACCACCCTGGTCAAATCT-TC-CACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
* *
1186310 GATTTTTTTCATTCTAATTTAACAT
64 GATTTTTTTCATTCTGATTTGACAT
* * * *
1186335 ATGATTACCACCTTGGTCAAATCTTCCACTCTCCTATCTGACCTATGGTTACCACCCTAGTCAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* * *
1186400 TTCTTTTT-ATTTTGATTCGATAT
66 TT-TTTTTCATTCTGATTTGACAT
* * ** * * *
1186423 ATGGTTACCACCAC-GATCAAATCTATCC-TTCTTTTACCTGATGTATGGTTACCACCCTGGTTA
1 ATGGTTACCACC-CTGGTCAAATCT-TCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
** * * *
1186486 GGGTCTTTTCATTTTGA-TTGACAA
64 GATTTTTTTCATTCTGATTTGACAT
* * * * * * * **
1186510 ATGGTTACCACCCTAGTCAAACTCTTTC-TTTTCTTGTCTGACGTACGGTTACCACCCTCATCAG
1 ATGGTTACCACCCTGGTCAAA-TCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAG
* **
1186574 A-TTTTTTCATTCCGATTTGATGT
65 ATTTTTTTCATTCTGATTTGACAT
** * * * * * * * * * *
1186597 GGGGTTACCAACCTAGTCAAATCTACCTCTCTCCTCTTTGATGTATGGTTACTACCTTGGTCAAA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
** * ** *
1186662 TTCATTTCATT-TGGAATAAACGT
66 TTTTTTTCATTCT-GATTTGACAT
* * * * * * * * *
1186685 ATGGTTACCATCTTGGTCAAATCTACCTCTCTCATGTCTGACGTACGGTTACCACCCTGTTCAAA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* **
1186750 TTTTTTTCATTCCT-ATTTAATGT
66 TTTTTTTCATT-CTGATTTGACAT
* * * ***
1186773 ATAGCTACCACCCTGGTCAAA--TT-CACT-TCCTTTTTTTCTGACGTATGGTTACCACCCTTAC
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCC----TATCTGACGTATGGTTACCACCCTGGT
* * * *
1186834 CATATTTTTTTCATTTTGATTTAACGT
62 CAGATTTTTTTCATTCTGATTTGACAT
** * * * *
1186861 ATGAATACCACCCTGGTCAAATCTACCAC-CTTCTTATCTAACGTATGGTTATCACCCTGGTCAG
1 ATGGTTACCACCCTGGTCAAATCTTCCACTC-TCCTATCTGACGTATGGTTACCACCCTGGTCAG
** * *
1186925 ATACTTTTCATTCTAATTTGACGT
65 ATTTTTTTCATTCTGATTTGACAT
* * * * * **
1186949 ATGGTTACGACCTTGGTTAAATCTTCCTCTCTCCTATCTAACACATGGTTACCACCCTGGTCAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
* *
1187014 TTCTTTTCATTCTGGTTTGACAT
66 TTTTTTTCATTCTGATTTGACAT
* * * ** *
1187037 ATGGATT-CCACCCTGGTCATATCTGTCTCACT-T-CTATCTTATGTACAGTTACCACCTTGGTC
1 ATGG-TTACCACCCTGGTCAAATCT-TC-CACTCTCCTATCTGACGTATGGTTACCACCCTGGTC
** *
1187099 AGATTTTTTTCATTCCCATTTGACAC
63 AGATTTTTTTCATTCTGATTTGACAT
* * * * * ** * *
1187125 ATGGTTACCACCCTAGTCAAAT-TTGTCACCCTTCTATCTAACGTATGGTTACCACCCAAGTGAA
1 ATGGTTACCACCCTGGTCAAATCTT-CCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAG
* * * * * *
1187189 ATTCTTTGT-GTTTTCATGT-AGCGT
65 ATT-TTTTTCATTCTGATTTGA-CAT
** * *** * * * ** * * *
1187213 ATGGTTACCACCCTACTCAAATCTACTTTTCACCAATTTGATATATGGTTACAACCCTAGTAAGA
1 ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
** * *
1187278 TACTTTTCATTTTGATTTAACAT
66 TTTTTTTCATTCTGATTTGACAT
* * * * * *
1187301 ATGGTTACCACCCTGGTCAAA-C-TCTCATCTTTCTTGTCTAACGTATGGTTACCACCATGGACA
1 ATGGTTACCACCCTGGTCAAATCTTC-CA-CTCTCCTATCTGACGTATGGTTACCACCCTGGTCA
* * *
1187364 GATTCTTTTCATTCTGATTTTATAT
64 GATTTTTTTCATTCTGATTTGACAT
*
1187389 ATGGTGACCA
1 ATGGTTACCA
1187399 TGCTCAAATC
Statistics
Matches: 796, Mismatches: 229, Indels: 78
0.72 0.21 0.07
Matches are distributed among these distances:
84 2 0.00
85 3 0.00
86 23 0.03
87 114 0.14
88 624 0.78
89 20 0.03
90 5 0.01
91 3 0.00
92 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTCAAATCTTCCACTCTCCTATCTGACGTATGGTTACCACCCTGGTCAGA
TTTTTTTCATTCTGATTTGACAT
Found at i:1186426 original size:44 final size:44
Alignment explanation
Indices: 1186378--1186536 Score: 114
Period size: 44 Copynumber: 3.6 Consensus size: 44
1186368 CTATCTGACC
*
1186378 TATGGTTACCACCCTAGTCAGATTCTTTTTATTTTGATTCGATA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
* * * * *
1186422 TATGGTTACCACCACGA-TCA-AATCTATCCTTCTTTT-A-CCTGATG
1 TATGGTTACCACC-CTAGTCAGAATCT-T-TTTATTTTGATTC-GATA
* * ** * *
1186466 TATGGTTACCACCCTGGTTAGGGTCTTTTCATTTTGATT-GACA
1 TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
*
1186509 AATGGTTACCACCCTAGTCA-AACTCTTT
1 TATGGTTACCACCCTAGTCAGAA-TCTTT
1186537 CTTTTCTTGT
Statistics
Matches: 84, Mismatches: 22, Indels: 19
0.67 0.18 0.15
Matches are distributed among these distances:
43 35 0.42
44 38 0.45
45 11 0.13
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (44 bp):
TATGGTTACCACCCTAGTCAGAATCTTTTTATTTTGATTCGATA
Found at i:1187571 original size:44 final size:44
Alignment explanation
Indices: 1187459--1187572 Score: 174
Period size: 44 Copynumber: 2.6 Consensus size: 44
1187449 GATTTGATGC
*
1187459 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACAT
* *
1187503 ATGGTTACCACCCAAGTCAAATTTGTCTCCCTCTTGTCTAACGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACAT
* * *
1187547 ATGGTTACCAGCCTGGTCAGATTTGT
1 ATGGTTACCACCCAGGTCAAATTTGT
1187573 TTCATTCCGT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (44 bp):
ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACAT
Found at i:1187675 original size:88 final size:88
Alignment explanation
Indices: 1187503--1187706 Score: 218
Period size: 88 Copynumber: 2.3 Consensus size: 88
1187493 TGTCTAACAT
** * * *
1187503 ATGGTTACCACCCAAGTCAAATTTGTCTCCCTCTTGTCTAACGTATGGTTACCAGCCTGGTCAGA
1 ATGGTTACCACCCTGGTCAAATTTGTGTCCCTCTTGTCCAACGTATGGTTACCAGCCTGGTCAAA
*
1187568 TTTGTTTCATTCCGTTTTGACAC
66 TTTGTTTCATTCCGATTTGACAC
* * *
1187591 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGTATGGTTACCA-CCTGTGTCA
1 ATGGTTACCACCCTGGTCAAATTTGTGTCCCTCT-TGTCCAACGTATGGTTACCAGCCTG-GTCA
* **
1187654 AATTCT-TCTT-ATTCGGATTTGACGT
64 AATT-TGT-TTCATTCCGATTTGACAC
* *
1187679 ATGGTTACCACCATGGTCAAATCTGTGT
1 ATGGTTACCACCCTGGTCAAATTTGTGT
1187707 TTTTCTTATC
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
87 5 0.05
88 89 0.92
89 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.38
Consensus pattern (88 bp):
ATGGTTACCACCCTGGTCAAATTTGTGTCCCTCTTGTCCAACGTATGGTTACCAGCCTGGTCAAA
TTTGTTTCATTCCGATTTGACAC
Found at i:1187934 original size:44 final size:44
Alignment explanation
Indices: 1187884--1188001 Score: 109
Period size: 44 Copynumber: 2.7 Consensus size: 44
1187874 TTTGACGCAT
1187884 GGTTACCACCCTAGTCAAATTTGTCTTTCT-C-ATCTGAAACGTAA
1 GGTTACCACCCTAGTCAAATTTGTCTTTCTCCAATCTGAAAC--AA
* * * * * *
1187928 GGTTACCACCTTGGTCATATTT-T-TTTCATTCCAATTTGACACAT
1 GGTTACCACCCTAGTCAAATTTGTCTTTC--TCCAATCTGAAACAA
*
1187972 GGTTACCACCCTAGTTAAATTTGTCTTTCT
1 GGTTACCACCCTAGTCAAATTTGTCTTTCT
1188002 TCTGTCTAAC
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
42 4 0.07
43 1 0.02
44 40 0.69
45 2 0.03
46 11 0.19
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.40
Consensus pattern (44 bp):
GGTTACCACCCTAGTCAAATTTGTCTTTCTCCAATCTGAAACAA
Found at i:1188013 original size:88 final size:89
Alignment explanation
Indices: 1187858--1188254 Score: 328
Period size: 88 Copynumber: 4.5 Consensus size: 89
1187848 AACGTGTTAG
*** *
1187858 ATTCTTTTCATTTTGATTTGACGCATGGTTACCACCCTAGTCAAATTTGTC-TT-TCTC-ATCTG
1 ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATCT-
*
1187920 AAACGTAAGGTTACCACCTTGGTCAT
65 -AACGTATGGTTACCACCTTGGTCAT
* * *
1187946 ATTTTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTTAAATTTGTCTTTCT-TCTGTCTA
1 ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATCTA
*
1188010 ACGTATGGTTACCACCTTGGTTGA-
66 ACGTATGGTTACCACCTTGG-TCAT
* ** *** * *
1188034 ATTCTTCTCATTCTGATTTGATGTAGGGTTACCACCCTAGTCAAATCTG-CTTT-TCTCTTATCT
1 ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTC-TATCT
* * * * * * *
1188097 GATGTATGGTAACAACCCTAGTTAT
65 AACGTATGGTTACCACCTTGGTCAT
* * * * *
1188122 ATTCTTTTCATT-CAGATTTGACACATGGTTACCACCTTGGTTAAATTCGTCTCTCT-TCTATCT
1 ATTCTTTTCATTCCA-ATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATCT
* * *
1188185 AATGTATGGTTACCACCTCGAG-CAG
65 AACGTATGGTTACCACCTTG-GTCAT
* *** * *
1188210 ATTCTTTCCATTTTTATTTAACATATGGTTACCACCCTAGTCAAA
1 ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAA
1188255 CTCCCCTCTT
Statistics
Matches: 241, Mismatches: 56, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
86 1 0.00
87 8 0.03
88 215 0.89
89 12 0.05
90 5 0.02
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (89 bp):
ATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCAAATTTGTCTTTCTCTCTATCTA
ACGTATGGTTACCACCTTGGTCAT
Found at i:1188167 original size:176 final size:175
Alignment explanation
Indices: 1187858--1188591 Score: 450
Period size: 176 Copynumber: 4.3 Consensus size: 175
1187848 AACGTGTTAG
* * * *
1187858 ATTCTTTTCATTTTGATTTGACGCATGGTTACCACCCTAGTCAAATTTGTCTTTCTCATCTGAAA
1 ATTCTTCTCATTCTGATTTGACGCAGGGTTACCACCCTAGTCAAATCTGTCTTTCTCATCTG-AA
* * * * *
1187923 CGTAAGGTTACCACCTTGGTCATATTTTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTT
65 CGTAAGGTAACAACCCTAGTCATATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTT
* * *
1187988 AAATTTGTCTTTCTTCTGTCTAACGTATGGTTACCACCTTGGTTGA
130 AAATTCGTCTCTCTTCTATCTAACGTATGGTTACCACCTTGGTTGA
* *
1188034 ATTCTTCTCATTCTGATTTGATGTAGGGTTACCACCCTAGTCAAATCTG-CTTTTCTCTTATCTG
1 ATTCTTCTCATTCTGATTTGACGCAGGGTTACCACCCTAGTCAAATCTGTC-TTTCTC--ATCTG
* * * * *
1188098 -ATGTATGGTAACAACCCTAGTTATATTCTTTTCATT-CAGATTTGACACATGGTTACCACCTTG
63 AACGTAAGGTAACAACCCTAGTCATATTCTTTTCATTCCA-ATTTGACACATGGTTACCACCCTA
* * **
1188161 GTTAAATTCGTCTCTCTTCTATCTAATGTATGGTTACCACCTCGAGCAG-
127 GTTAAATTCGTCTCTCTTCTATCTAACGTATGGTTACCACCTTG-GTTGA
* * * ** * ** **
1188210 ATTCTT-TCCATTTTTATTTAACATATGGTTACCACCCTAGTCAAACTCCCCTCTTTCTTGTCTG
1 ATTCTTCT-CATTCTGATTTGACGCAGGGTTACCACCCTAGTCAAA-T-CTGTCTTTCTCATCTG
* * * * * * * *
1188274 AA-GTATGGTTAC--CTCCTAGGTTAGATTCTTTTCATTTCGATTTGATATAT-GTTGACCA-CC
63 AACGTAAGGTAACAAC-CCTA-GTCATATTCTTTTCATTCCAATTTGACACATGGTT-ACCACCC
* * ** *
1188334 TAGTCAAATCCACCTC-CTTCCTGTCTAACG--T-G-TA--A--------G-
125 TAGTTAAATTCGTCTCTCTT-CTATCTAACGTATGGTTACCACCTTGGTTGA
* * * * * * *
1188370 ATTCTTTTCATT-TCGATTTGATGCATGGTTACCACCCT-GCCAATTTTATGTCTTTCTTATCT-
1 ATTCTTCTCATTCT-GATTTGACGCAGGGTTACCACCCTAGTCAA--ATCTGTCTTTCTCATCTG
* * * ***
1188432 AACGTAAGGTTACCACCCTAGTCAGAGTT-TTTTCATTTTGATTTGACACAT-GTTACCACCCTA
63 AACGTAAGGTAACAACCCTAGTCATA-TTCTTTTCATTCCAATTTGACACATGGTTACCACCCTA
* * ** * * * * **
1188495 GTTAAATTTGTGTCTCTTCTGCCTAACGTATGGCTATCACCCTAGTCAA
127 GTTAAATTCGTCTCTCTTCTATCTAACGTATGGTTACCACCTTGGTTGA
* * *
1188544 ATTCTTCTCATTCTGATTTTACGTAGGGTTACCACCCTGGTCAAATCT
1 ATTCTTCTCATTCTGATTTGACGCAGGGTTACCACCCTAGTCAAATCT
1188592 ACTTTTGTCC
Statistics
Matches: 438, Mismatches: 78, Indels: 87
0.73 0.13 0.14
Matches are distributed among these distances:
158 6 0.01
159 73 0.17
160 40 0.09
161 3 0.01
162 1 0.00
163 2 0.00
165 1 0.00
169 1 0.00
171 2 0.00
172 1 0.00
173 3 0.01
174 35 0.08
175 36 0.08
176 217 0.50
177 5 0.01
178 11 0.03
179 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (175 bp):
ATTCTTCTCATTCTGATTTGACGCAGGGTTACCACCCTAGTCAAATCTGTCTTTCTCATCTGAAC
GTAAGGTAACAACCCTAGTCATATTCTTTTCATTCCAATTTGACACATGGTTACCACCCTAGTTA
AATTCGTCTCTCTTCTATCTAACGTATGGTTACCACCTTGGTTGA
Found at i:1188280 original size:88 final size:87
Alignment explanation
Indices: 1188188--1188359 Score: 197
Period size: 88 Copynumber: 2.0 Consensus size: 87
1188178 TCTATCTAAT
* **
1188188 GTATGGTTACCACCTCGAG-CAGATTCTTTCCATTTTTATTTAACATATGGTT-ACCACCCTAGT
1 GTATGGTTACCACCTAG-GTCAGATTCTTTCCATTTCGATTTAACATAT-GTTGACCA-CCTAGT
* *
1188251 CAAACTCC-CCTCTTTCTTGTCTGAA
63 CAAA-TCCACCTCCTTCCTGTCTGAA
* * * * *
1188276 GTATGGTTACCTCCTAGGTTAGATTCTTTTCATTTCGATTTGATATATGTTGACCACCTAGTCAA
1 GTATGGTTACCACCTAGGTCAGATTCTTTCCATTTCGATTTAACATATGTTGACCACCTAGTCAA
1188341 ATCCACCTCCTTCCTGTCT
66 ATCCACCTCCTTCCTGTCT
1188360 AACGTGTAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
86 3 0.04
87 26 0.37
88 42 0.59
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.39
Consensus pattern (87 bp):
GTATGGTTACCACCTAGGTCAGATTCTTTCCATTTCGATTTAACATATGTTGACCACCTAGTCAA
ATCCACCTCCTTCCTGTCTGAA
Found at i:1188877 original size:44 final size:44
Alignment explanation
Indices: 1188814--1189001 Score: 186
Period size: 44 Copynumber: 4.3 Consensus size: 44
1188804 GATTTGATGC
1188814 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* *
1188858 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
* * * * * *
1188902 ATGGTTACCAGCCTGGTCAGATTTGTTTCAT-TCCGTT-T-TGACAC
1 ATGGTTACCACCCAGGTCAAATTTGTCTC-TCT-C-TTGTCTAACAT
* * * * **
1188946 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGT
1 ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCT-TGTCTAACAT
1188990 ATGGTTACCACC
1 ATGGTTACCACC
1189002 TGTGTCAAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 2 0.02
44 110 0.93
45 2 0.02
46 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (44 bp):
ATGGTTACCACCCAGGTCAAATTTGTCTCTCTCTTGTCTAACAT
Found at i:1189030 original size:88 final size:88
Alignment explanation
Indices: 1188858--1189055 Score: 215
Period size: 88 Copynumber: 2.2 Consensus size: 88
1188848 TGTCTAACAT
* *
1188858 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCTAACGTATGGTTACCAGCCTGGTCAGA
1 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCCAACGTATGGTTACCAGCCTGGTCAAA
*
1188923 TTTGTTTCATTCCGTTTTGACAC
66 TTTGTTTCATTCCGATTTGACAC
* * * * *
1188946 ATGGTTACCACCCTGGTTAAATTTGTGTCTCT-TCTGTCCAATGTATGGTTACCA-CCTGTGTCA
1 ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCT-TGTCCAACGTATGGTTACCAGCCTG-GTCA
* **
1189009 AATTCT-TCTT-ATTCGGATTTGACGT
64 AATT-TGT-TTCATTCCGATTTGACAC
* *
1189034 ATGGTTACCACCCCGATCAAAT
1 ATGGTTACCACCCAGGTCAAAT
1189056 CTACTTTTCT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
87 5 0.05
88 84 0.91
89 3 0.03
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (88 bp):
ATGGTTACCACCCAGGTCAAATTTGTCTCCCTCTTGTCCAACGTATGGTTACCAGCCTGGTCAAA
TTTGTTTCATTCCGATTTGACAC
Found at i:1189159 original size:26 final size:26
Alignment explanation
Indices: 1189123--1189175 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1189113 GTCTGACATA
1189123 TGGTTACCACCCTAGTCAGATTTCTT
1 TGGTTACCACCCTAGTCAGATTTCTT
*
1189149 TGGTTACCACCCTGGTCAGATTTCTT
1 TGGTTACCACCCTAGTCAGATTTCTT
1189175 T
1 T
1189176 TATTCCGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (26 bp):
TGGTTACCACCCTAGTCAGATTTCTT
Found at i:1189400 original size:44 final size:44
Alignment explanation
Indices: 1189352--1189691 Score: 144
Period size: 44 Copynumber: 7.7 Consensus size: 44
1189342 AATTTGACAC
* *
1189352 ATGGTTACCACCCTGGTTAAATT-TGTCT-ATTTTCTG-TTTAATGT
1 ATGGTTACCACCCTGGTCAAATTCT-TCTCA-TTT-TGATTTAACGT
* * *
1189396 ATGGTTACCATCTTGGTCGAATTCTTCTCATTTTGATTTAACGT
1 ATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGATTTAACGT
* * * *
1189440 AAGGTTACCACCCTGGTCAAA-TCTTCT--TTTCTCCTATCTGACGT
1 ATGGTTACCACCCTGGTCAAATTCTTCTCATTT-T--GATTTAACGT
* * * * ** * **
1189484 ATGGTAACAACCCTAGTCAAAATT-TTTTCATTCAGATTTGACAC
1 ATGGTTACCACCCTGGTC-AAATTCTTCTCATTTTGATTTAACGT
* * * * *
1189528 ATGGTTACCACCTTGGTTAAATT-TGTCTC-TTTTCTATCTAATGT
1 ATGGTTACCACCCTGGTCAAATTCT-TCTCATTTT-GATTTAACGT
* * * * *
1189572 ATGGTTACCACCTTGGACAGATTCTT-TCAATTTTTATTTAACAT
1 ATGGTTACCACCCTGGTCAAATTCTTCTC-ATTTTGATTTAACGT
* ** * * * * *
1189616 ATGTTTACTGCCTTGGTCAAATTCTCCTCTTTCTTG-TCTGACGT
1 ATGGTTACCACCCTGGTCAAATTCTTCTCATT-TTGATTTAACGT
* * * *
1189660 ATGGTTAGCACCCTGGTTAGATTCTTTTCATT
1 ATGGTTACCACCCTGGTCAAATTCTTCTCATT
1189692 CCGATTTGAT
Statistics
Matches: 215, Mismatches: 64, Indels: 34
0.69 0.20 0.11
Matches are distributed among these distances:
41 3 0.01
42 1 0.00
43 18 0.08
44 173 0.80
45 17 0.08
46 1 0.00
47 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (44 bp):
ATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGATTTAACGT
Found at i:1189427 original size:88 final size:87
Alignment explanation
Indices: 1189247--1189587 Score: 258
Period size: 88 Copynumber: 3.9 Consensus size: 87
1189237 TAGATTCTTT
* * * * * * * * *
1189247 TCATTTCGATTTGATGA-ATGGTTACCACCCTGGTCAAATTTGTCTCTCTCATGTCAAACGTAAG
1 TCATTTCAATTTGA-CACATGGTTACCACCCTGGTTAAATTTGTCTTTTTC-TATCTAATGTATG
* * * * * * *
1189311 GTTTCCACCCTAGTGAGATTTTTT
64 GTTACCACCTTGGTCAAAATTTTC
* *
1189335 TCATTTCAATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTATTTTCTGTTTAATGTATGG
1 TCATTTCAATTTGACACATGGTTACCACCCTGGTTAAATTTGTCT-TTTTCTATCTAATGTATGG
* *
1189400 TTACCATCTTGGTC-GAATTCTTC
65 TTACCACCTTGGTCAAAATT-TTC
** * ** * * * * *
1189423 TCATTTTGATTTAACGTAAGGTTACCACCCTGGTCAAATCT-TCTTTTCTCCTATCTGACGTATG
1 TCATTTCAATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTTTT-T-CTATCTAATGTATG
* * * * *
1189487 GTAACAACCCTAGTCAAAATTTTT
64 GTTACCACCTTGGTCAAAATTTTC
*
1189511 TCA-TTCAGATTTGACACATGGTTACCACCTTGGTTAAATTTGTCTCTTTTCTATCTAATGTATG
1 TCATTTCA-ATTTGACACATGGTTACCACCCTGGTTAAATTTGTCT-TTTTCTATCTAATGTATG
1189575 GTTACCACCTTGG
64 GTTACCACCTTGG
1189588 ACAGATTCTT
Statistics
Matches: 194, Mismatches: 50, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
86 3 0.02
87 11 0.06
88 166 0.86
89 11 0.06
90 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (87 bp):
TCATTTCAATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTTTTTCTATCTAATGTATGGT
TACCACCTTGGTCAAAATTTTC
Found at i:1189635 original size:176 final size:176
Alignment explanation
Indices: 1189330--1189664 Score: 455
Period size: 176 Copynumber: 1.9 Consensus size: 176
1189320 CTAGTGAGAT
* *
1189330 TTTTTTCATTTCAATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTATTTTCTGTTTAATG
1 TTTTTTCATTTCAATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTATTTTCTATCTAATG
* * *
1189395 TATGGTTACCATCTTGGTCGAATTCTTCTCATTTTGATTTAACGTAAGGTTACCACCCTGGTCAA
66 TATGGTTACCACCTTGGACGAATTCTTCTCATTTTGATTTAACATAAGGTTACCACCCTGGTCAA
*
1189460 A-TCTTCT-TTTCTCCTATCTGACGTATGGTAACAACCCTAGTCAAAA
131 ATTCTCCTCTTTCT--TATCTGACGTATGGTAACAACCCTAGTCAAAA
* *
1189506 TTTTTTCA-TTCAGATTTGACACATGGTTACCACCTTGGTTAAATTTGTCTCTTTTCTATCTAAT
1 TTTTTTCATTTCA-ATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTATTTTCTATCTAAT
* * * ** *
1189570 GTATGGTTACCACCTTGGAC-AGATTCTT-TCAATTTTTATTTAACATATGTTTACTGCCTTGGT
65 GTATGGTTACCACCTTGGACGA-ATTCTTCTC-ATTTTGATTTAACATAAGGTTACCACCCTGGT
*
1189633 CAAATTCTCCTCTTTCTTGTCTGACGTATGGT
128 CAAATTCTCCTCTTTCTTATCTGACGTATGGT
1189665 TAGCACCCTG
Statistics
Matches: 139, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
175 7 0.05
176 122 0.88
177 5 0.04
178 5 0.04
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.44
Consensus pattern (176 bp):
TTTTTTCATTTCAATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTATTTTCTATCTAATG
TATGGTTACCACCTTGGACGAATTCTTCTCATTTTGATTTAACATAAGGTTACCACCCTGGTCAA
ATTCTCCTCTTTCTTATCTGACGTATGGTAACAACCCTAGTCAAAA
Found at i:1189690 original size:176 final size:173
Alignment explanation
Indices: 1189316--1189700 Score: 454
Period size: 176 Copynumber: 2.2 Consensus size: 173
1189306 GTAAGGTTTC
*
1189316 CACCCTAGTGAGATTTTTTTCATTTCA-ATTTGACACATGGTTACCACCCTGGTTAAATTTGTCT
1 CACCCTAGTAAGA-TTTTTTCA-TTCAGATTTGACACATGGTTACCACCCTGGTTAAATTTGTCT
* * * * *
1189380 ATTTTCTGTTTAATGTATGGTTACCATCTTGGTCGAATTCTTCTCATTTTGATTTAACGTAAGGT
64 ATTTTCTATCTAATGTATGGTTACCACCTTGGACGAATTCTTCTCATTTTGATTTAACATAAGGT
*
1189445 TACCACCCTGGTCAAATCTTCTTTTCTCCTATCTGACGTATGGTAA
129 TACCACCCTGGTCAAATCTCCTTTTCT-CTATCTGACGTATGGTAA
* *
1189491 CAACCCTAGTCAAAATTTTTTCATTCAGATTTGACACATGGTTACCACCTTGGTTAAATTTGTCT
1 C-ACCCTAGT-AAGATTTTTTCATTCAGATTTGACACATGGTTACCACCCTGGTTAAATTTGTCT
* * *
1189556 CTTTTCTATCTAATGTATGGTTACCACCTTGGAC-AGATTCTT-TCAATTTTTATTTAACATATG
64 ATTTTCTATCTAATGTATGGTTACCACCTTGGACGA-ATTCTTCTC-ATTTTGATTTAACATAAG
* ** * * *
1189619 TTTACTGCCTTGGTCAAATTCTCCTCTTTCT-TGTCTGACGTATGGTTAG
127 GTTACCACCCTGGTCAAA-TCTCCT-TTTCTCTATCTGACGTATGG-TAA
* * *
1189668 CACCCTGGTTAGATTCTTTTCATTCCGATTTGA
1 CACCCTAGTAAGATT-TTTTCATTCAGATTTGA
1189701 TAGATGTTGG
Statistics
Matches: 179, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
175 12 0.07
176 152 0.85
177 10 0.06
178 5 0.03
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (173 bp):
CACCCTAGTAAGATTTTTTCATTCAGATTTGACACATGGTTACCACCCTGGTTAAATTTGTCTAT
TTTCTATCTAATGTATGGTTACCACCTTGGACGAATTCTTCTCATTTTGATTTAACATAAGGTTA
CCACCCTGGTCAAATCTCCTTTTCTCTATCTGACGTATGGTAA
Found at i:1190297 original size:44 final size:44
Alignment explanation
Indices: 1190248--1190351 Score: 145
Period size: 44 Copynumber: 2.4 Consensus size: 44
1190238 CTAACGTACG
* * *
1190248 ATTACCACCTTGGTCGGTTTCTTTTCATTCTGATTTGACATATG
1 ATTACCACCTTGGTCAGATTCTTTTCATTCTGATTTGACATATC
* * **
1190292 GTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGATGTATC
1 ATTACCACCTTGGTCAGATTCTTTTCATTCTGATTTGACATATC
1190336 ATTACCACCTTGGTCA
1 ATTACCACCTTGGTCA
1190352 AATCTGTCTC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.42
Consensus pattern (44 bp):
ATTACCACCTTGGTCAGATTCTTTTCATTCTGATTTGACATATC
Found at i:1193659 original size:13 final size:13
Alignment explanation
Indices: 1193641--1193665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1193631 ATACAAAGAT
1193641 CAATGTATCGATG
1 CAATGTATCGATG
1193654 CAATGTATCGAT
1 CAATGTATCGAT
1193666 ACATTTGAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATG
Found at i:1193731 original size:13 final size:13
Alignment explanation
Indices: 1193713--1193745 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
1193703 AGCTTCGTAG
1193713 CGATACATTGTAT
1 CGATACATTGTAT
1193726 CGATACATTGTAT
1 CGATACATTGTAT
1193739 CGATACA
1 CGATACA
1193746 ACACTTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1194875 original size:52 final size:51
Alignment explanation
Indices: 1194557--1195661 Score: 807
Period size: 52 Copynumber: 22.7 Consensus size: 51
1194547 CGAAGAATGA
* * * * *
1194557 CAATGTGCTGATTCATGGCCAGCGACATTTAGACTTGAAGA--A-AA-ATGC
1 CAATGTGCTGATTCAAGGCCAGCGATA-TTGGACTTAAAGATGAGAAGGTGC
** * * * *
1194605 CAATGTGCTGAGGCAAGGCCAGCGACATTGGGCTTAGGAATG-TTA-AAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA--AA-GATGAGAAGGTGC
** * *
1194657 CAATACGCTGATTCAAGGCCAACGATATTGGACTTAAGGATGA-AA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* *
1194706 CAATGTGCTGATTCAAGGACCAGTGATATTGGACTTAAGGAT--GAAGGTGC
1 CAATGTGCTGATTCAAGG-CCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * **
1194756 CAATGTGCTGATTCAAGGACTAGTGATATTGGACTTAAAGAT--GAAGACGC
1 CAATGTGCTGATTCAAGG-CCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * *
1194806 CAATGTGCTGATACAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGC
* * *
1194858 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT--GAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* *
1194907 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGC
* ** *
1194959 CAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGAT--GAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * * *
1195008 CAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACACAGGAGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGA-AGGTGC
* * *
1195060 CAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGAT-A-AAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * * *
1195109 CAATGTCCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * *
1195157 CACTATGCTGATTCAAGGCCAGCGATACTGGAC-T-----T-A-AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * * * *
1195200 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGACAAAGGCGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGC
* * *
1195252 TAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----A--TGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * *
1195291 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* *
1195339 CAATATGCTGATTAAAGGCCAGCGATATTGGAC-T-----T-A-AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * * * *
1195382 CAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGCGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGC
* * *** *
1195434 CAATATGCTGATTCAAGGCCAGCGAAACCAGACTT--A-AT-----GGTAC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * * *
1195477 CAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATGACAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGC
* * *
1195529 CAATATGCTGATTCAAGGCTAGCGATACTGGAC-T-----T-A-AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
* * * ** * *
1195572 CAACGTGCTGATTCAAGGCTAGCGACATTGGTTTTAAAGATGACAAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGC
* * * * *
1195624 CAATATGTTGATTCAAGGCTAGCGTTATTGGGCTTAAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1195662 AGAAGATGCC
Statistics
Matches: 850, Mismatches: 138, Indels: 134
0.76 0.12 0.12
Matches are distributed among these distances:
39 31 0.04
40 1 0.00
41 1 0.00
43 134 0.16
44 5 0.01
45 2 0.00
46 5 0.01
47 10 0.01
48 91 0.11
49 169 0.20
50 99 0.12
51 7 0.01
52 295 0.35
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (51 bp):
CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGC
Found at i:1194909 original size:101 final size:100
Alignment explanation
Indices: 1194557--1195672 Score: 1237
Period size: 101 Copynumber: 11.5 Consensus size: 100
1194547 CGAAGAATGA
* * * * **
1194557 CAATGTGCTGATTCATGGCCAGCGACATTTAGACTTGAAGAA--AA-ATGCCAATGTGCTGAGGC
1 CAATATGCTGATTCAAGGCCAGCGATA-TTGGACTT-AA-AATGAAGATGCCAATGTGCTGATTC
* * ** *
1194619 AAGGCCAGCGACATTGGGCTT-AGGAATGTTAAAGATGC
63 AAGGCCAGCGACATTGGTCTTAAAG-ATGACAAAGGTGC
* * *
1194657 CAATACGCTGATTCAAGGCCAACGATATTGGACTTAAGGATGAA-AGTGCCAATGTGCTGATTCA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA-AATGAAGA-TGCCAATGTGCTGATTCA
* * * *
1194721 AGGACCAGTGATATTGGACTTAAGGATG---AAGGTGC
64 AGG-CCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* * * * *
1194756 CAATGTGCTGATTCAAGGACTAGTGATATTGGACTTAAAGATGAAGACGCCAATGTGCTGATACA
1 CAATATGCTGATTCAAGG-CCAGCGATATTGGACTTAAA-ATGAAGATGCCAATGTGCTGATTCA
* *
1194821 AGGCCAGCGACATTGGGCTTAAAGATGACGAAGGTGC
64 AGGCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
*
1194858 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATGAAGATGCCAATGTGCTGATTCAA
*
1194923 GGCCAGCGACATTGGACTTAAAGATGACGAAA-GTGC
65 GGCCAGCGACATTGGTCTTAAAGATGAC-AAAGGTGC
** *
1194959 CAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTGTTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATGAAGATGCCAATGTGCTGATTCAA
* * *
1195024 GGCCAGCGACATTGGACTTAAAGATGACACAGGAGC
65 GGCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* * *
1195060 CAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATAAAGATGCCAATGTCCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATGAAGATGCCAATGTGCTGATTCAA
1195125 GGCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGC
65 GGCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* *
1195157 CACTATGCTGATTCAAGGCCAGCGATACTGGACTT-AAA-G--G-TGCCAATGTGCTGATTCAAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGAAGATGCCAATGTGCTGATTCAAG
* *
1195217 GCCAACGACATTGGTCTTAAAGATGACAAAGGCGC
66 GCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* *
1195252 TAATATGCTGATTCAAGGCCAGCGATATTGGGC-T----T----ATGCCAATGTGCTGATTCAAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGAAGATGCCAATGTGCTGATTCAAG
1195308 GCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGC
66 GCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* *
1195339 CAATATGCTGATTAAAGGCCAGCGATATTGGACTT-AAA-G--G-TGCCAATGTGCTAATTCAAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGAAGATGCCAATGTGCTGATTCAAG
*
1195399 GCCAGCGACATTGGTCTTAAAGATGACAAAGGCGC
66 GCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* *** *
1195434 CAATATGCTGATTCAAGGCCAGCGAAACCAGACTT--AATG--G-TACCAATGTGCTGATTCAAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGAAGATGCCAATGTGCTGATTCAAG
*
1195494 GCCAGCAACATTGGTCTTAAAGATGACAAAGGTGC
66 GCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* * *
1195529 CAATATGCTGATTCAAGGCTAGCGATACTGGACTT-AAA-G--G-TGCCAACGTGCTGATTCAAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGAAGATGCCAATGTGCTGATTCAAG
* * *
1195589 GCTAGCGACATTGGTTTTAAAGATGACAAATGTGC
66 GCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
* * * *
1195624 CAATATGTTGATTCAAGGCTAGCGTTATTGGGCTTAAAA-GAAGATGCCA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGAAGATGCCA
1195673 CCAACTTGTA
Statistics
Matches: 892, Mismatches: 89, Indels: 71
0.85 0.08 0.07
Matches are distributed among these distances:
87 36 0.04
88 4 0.00
89 1 0.00
90 2 0.00
91 110 0.12
92 5 0.01
93 2 0.00
94 9 0.01
95 238 0.27
96 8 0.01
97 37 0.04
98 8 0.01
99 55 0.06
100 69 0.08
101 262 0.29
102 43 0.05
103 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (100 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGAAGATGCCAATGTGCTGATTCAAG
GCCAGCGACATTGGTCTTAAAGATGACAAAGGTGC
Found at i:1195211 original size:43 final size:43
Alignment explanation
Indices: 1195058--1195602 Score: 342
Period size: 43 Copynumber: 11.8 Consensus size: 43
1195048 TGACACAGGA
* *
1195058 GCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATAAAGAT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG-----G-T
* * *
1195107 GCCAATGTCCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT----A-AAGGT
* * *
1195155 GCCACTATGCTGATTCAAGGCCAGCGATACTGGACTTAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGT
* * * *
1195198 GCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGACAAAG
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG--G-----T
* *
1195248 GCGCTAATATGCTGATTCAAGGCCAGCGATATTGGGCTT--A--T
1 GC-C-AATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGT
* *
1195289 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT----A-AAGGT
* *
1195337 GCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGT
* * * *
1195380 GCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGC
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGAC-T-----T---AAAGGT
* *** *
1195432 GCCAATATGCTGATTCAAGGCCAGCGAAACCAGACTTAATGGT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGT
* * * *
1195475 ACCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATGACAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGAC-T-----T---AAAGGT
* * *
1195527 GCCAATATGCTGATTCAAGGCTAGCGATACTGGACTTAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGT
** *
1195570 GCCAACGTGCTGATTCAAGGCTAGCGACATTGG
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGG
1195603 TTTTAAAGAT
Statistics
Matches: 390, Mismatches: 65, Indels: 88
0.72 0.12 0.16
Matches are distributed among these distances:
39 31 0.08
40 1 0.00
41 2 0.01
43 141 0.36
44 4 0.01
45 1 0.00
46 3 0.01
48 66 0.17
49 35 0.09
50 3 0.01
51 3 0.01
52 96 0.25
53 1 0.00
54 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (43 bp):
GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGT
Found at i:1195412 original size:182 final size:182
Alignment explanation
Indices: 1195105--1195659 Score: 840
Period size: 182 Copynumber: 3.0 Consensus size: 182
1195095 AAAGATAAAG
* *
1195105 ATGCCAATGTCCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCACTATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
1195170 CAAGGCCAGCGATACTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTT
66 CAAGGCCAGCGATACTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
*
1195235 AAAGATGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
131 AAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1195287 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* * *
1195352 AAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGCCAGCGACATTGGTCTT
66 CAAGGCCAGCGATACTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
* *** *
1195417 AAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGAAACCAGACTT
131 AAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
1195469 AATGGTACCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATGACAAAGGTGCCAATA
1 -AT-G--CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGCCAATA
* * *
1195534 TGCTGATTCAAGGCTAGCGATACTGGACTTAAAGGTGCCAACGTGCTGATTCAAGGCTAGCGACA
58 TGCTGATTCAAGGCCAGCGATACTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACA
* * * * * *
1195599 TTGGTTTTAAAGATGACAAATGTGCCAATATGTTGATTCAAGGCTAGCGTTATTGGGCTT
123 TTGGTCTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1195659 A
1 A
1195660 AAAGAAGATG
Statistics
Matches: 335, Mismatches: 30, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
182 170 0.51
183 2 0.01
184 1 0.00
186 35 0.10
187 2 0.01
188 1 0.00
189 4 0.01
190 120 0.36
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (182 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATACTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
AAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:1195774 original size:33 final size:33
Alignment explanation
Indices: 1195727--1195984 Score: 166
Period size: 33 Copynumber: 7.7 Consensus size: 33
1195717 TTTTGAAGGT
* * * *
1195727 TGCCACTGACTTGTGGGCTTAAAAGGAGAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGA
1195760 TGCCACGGAGTTGTGGACTTAAAA-GAAACAATG-
1 TGCCACGGAGTTGTGGACTTAAAAGGAAA-AA-GA
* * * * *
1195793 TGCCATGGAGTTGTGGGCTTTAAAAGGGGAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAA-GGAAAAAGA
* ** ** *
1195828 TGCTACAAAGTCATGGACTTTAAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGA
* * *
1195861 TGCCACGGTGTTATGGACTTAAAA-GAAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAA-AAGA
* * *
1195894 TGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAA-GGAAAAAGA
** * **
1195929 TGCCAAAGAGTTGTGAACTTTGAA-G-AAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGA
*
1195960 TGCCACTGAGTTGTGGACTTTAAAA
1 TGCCACGGAGTTGTGGAC-TTAAAA
1195985 AGAGATTGCC
Statistics
Matches: 171, Mismatches: 43, Indels: 23
0.72 0.18 0.10
Matches are distributed among these distances:
31 19 0.11
32 12 0.07
33 81 0.47
34 23 0.13
35 29 0.17
36 7 0.04
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.22
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGA
Found at i:1195971 original size:31 final size:32
Alignment explanation
Indices: 1195936--1196016 Score: 114
Period size: 31 Copynumber: 2.6 Consensus size: 32
1195926 GGGTGCCAAA
*
1195936 GAGTTGTGAACTTTGAAGAAA-AGA-TGCCACT
1 GAGTTGTGGACTTT-AAGAAAGAGATTGCCACT
1195967 GAGTTGTGGACTTTAA-AAAGAGATTGCCACT
1 GAGTTGTGGACTTTAAGAAAGAGATTGCCACT
*
1195998 GAGTCGTGGACTTTAAGAA
1 GAGTTGTGGACTTTAAGAA
1196017 GGTATTTGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
29 3 0.07
30 5 0.11
31 35 0.78
32 2 0.04
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (32 bp):
GAGTTGTGGACTTTAAGAAAGAGATTGCCACT
Found at i:1195987 original size:101 final size:101
Alignment explanation
Indices: 1195748--1195984 Score: 327
Period size: 101 Copynumber: 2.4 Consensus size: 101
1195738 TGTGGGCTTA
* * *
1195748 AAAGGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGAAACAATGTGCCATGGAGTTGTGGGCTT
1 AAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGAAACAAGGTGCCACGGAGTTGTGGGCTT
* * *
1195813 TAAAAGGGGAAAGGGTGCTACAAAGTCATGGACTTT
66 TAAAAGGGAAAAGGGTGCCACAAAGTCATGAACTTT
* *
1195849 AAAGGAAAAAGATGCCACGGTGTTATGGACTTAAAAGAAACAAGGTGCCACGGAGTTGTGGGCTT
1 AAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGAAACAAGGTGCCACGGAGTTGTGGGCTT
**
1195914 TAAAAGGGAAAAGGGTGCCA-AAGAGTTGTGAACTTT
66 TAAAAGGGAAAAGGGTGCCACAA-AGTCATGAACTTT
* *
1195950 GAA-G-AAAAGATGCCACTGAGTTGTGGACTTTAAAA
1 AAAGGAAAAAGATGCCACGGAGTTGTGGAC-TTAAAA
1195985 AGAGATTGCC
Statistics
Matches: 120, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
99 21 0.17
100 9 0.08
101 90 0.75
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.22
Consensus pattern (101 bp):
AAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGAAACAAGGTGCCACGGAGTTGTGGGCTT
TAAAAGGGAAAAGGGTGCCACAAAGTCATGAACTTT
Found at i:1197313 original size:15 final size:13
Alignment explanation
Indices: 1197295--1197332 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
1197285 GCCTTTGCAC
1197295 TTTTTTGTGTGTT-
1 TTTTTT-TGTGTTG
*
1197308 TTTTTTTGTTTTG
1 TTTTTTTGTGTTG
1197321 TTTTTTTGTGTT
1 TTTTTTTGTGTT
1197333 TACTTTTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (13 bp):
TTTTTTTGTGTTG
Found at i:1197333 original size:15 final size:15
Alignment explanation
Indices: 1197304--1197333 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1197294 CTTTTTTGTG
*
1197304 TGTTTTTTTTTGTTT
1 TGTTTTTTTGTGTTT
1197319 TGTTTTTTTGTGTTT
1 TGTTTTTTTGTGTTT
1197334 ACTTTTGACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (15 bp):
TGTTTTTTTGTGTTT
Found at i:1197339 original size:15 final size:13
Alignment explanation
Indices: 1197295--1197333 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
1197285 GCCTTTGCAC
1197295 TTTTTTGTGTGTTT
1 TTTTTTGTGT-TTT
1197309 TTTTTTGT-TTTGT
1 TTTTTTGTGTTT-T
1197322 TTTTTTGTGTTT
1 TTTTTTGTGTTT
1197334 ACTTTTGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 10 0.43
14 11 0.48
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (13 bp):
TTTTTTGTGTTTT
Found at i:1200497 original size:34 final size:35
Alignment explanation
Indices: 1200459--1200525 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1200449 CCTTACAACA
1200459 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1200493 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1200526 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1201022 original size:13 final size:13
Alignment explanation
Indices: 1201004--1201029 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1200994 CTATTTATGA
1201004 TGTATCGATACAC
1 TGTATCGATACAC
1201017 TGTATCGATACAC
1 TGTATCGATACAC
1201030 ACAAATATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1201117 original size:31 final size:33
Alignment explanation
Indices: 1201040--1201125 Score: 95
Period size: 31 Copynumber: 2.6 Consensus size: 33
1201030 ACAAATATGC
* *
1201040 ATCGATACATAAATAGTGATGAACAGTGATTTTT
1 ATCGATACATGAATAGTGATGAACAGTGA-TTGT
* *
1201074 AACGATACATGAATAGTG-TGAATAGTGA-TGT
1 ATCGATACATGAATAGTGATGAACAGTGATTGT
* *
1201105 ATCGATAAATGAACAGTGATG
1 ATCGATACATGAATAGTGATG
1201126 TATCGATACA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
31 17 0.39
32 2 0.05
33 9 0.20
34 16 0.36
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (33 bp):
ATCGATACATGAATAGTGATGAACAGTGATTGT
Found at i:1201145 original size:21 final size:22
Alignment explanation
Indices: 1201092--1201168 Score: 120
Period size: 22 Copynumber: 3.5 Consensus size: 22
1201082 ATGAATAGTG
*
1201092 TGAATAGTGATGTATCGATAAA
1 TGAACAGTGATGTATCGATAAA
*
1201114 TGAACAGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATAAA
1201136 TGAA-AGTGATGTATCGATAAA
1 TGAACAGTGATGTATCGATAAA
*
1201157 TGAACAATGATG
1 TGAACAGTGATG
1201169 AATAGTGATG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
21 20 0.40
22 30 0.60
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (22 bp):
TGAACAGTGATGTATCGATAAA
Found at i:1201326 original size:20 final size:21
Alignment explanation
Indices: 1201263--1201333 Score: 76
Period size: 20 Copynumber: 3.5 Consensus size: 21
1201253 GCCAATGACC
**
1201263 TGTATCGATACATATTTGA-G
1 TGTATCGATACATATTAAATG
** *
1201283 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATATTAAATG
1201303 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATTAAATG
1201323 TGTATCGATAC
1 TGTATCGATAC
1201334 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
19 4 0.10
20 37 0.88
21 1 0.02
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (21 bp):
TGTATCGATACATATTAAATG
Found at i:1201399 original size:21 final size:21
Alignment explanation
Indices: 1201373--1201413 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1201363 GTCAACCTTG
1201373 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
1201394 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
1201414 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:1205689 original size:20 final size:20
Alignment explanation
Indices: 1205664--1205718 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
1205654 ATTTGCCTGC
* *
1205664 ATGTATTGATACATTGAATA
1 ATGTATCGATACATCGAATA
1205684 ATGTATCGATACATCGAATA
1 ATGTATCGATACATCGAATA
1205704 ATGTATCGATACATC
1 ATGTATCGATACATC
1205719 TGGGTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATCGAATA
Found at i:1205843 original size:19 final size:19
Alignment explanation
Indices: 1205819--1205870 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
1205809 ATAACGATAC
*
1205819 ATTGTATCGATACAAAAGT
1 ATTGTATCGATACAAAACT
* *
1205838 ATTGTATTGATACAACACT
1 ATTGTATCGATACAAAACT
1205857 -TATGTATCGATACA
1 AT-TGTATCGATACA
1205871 GTTACTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 1 0.04
19 27 0.96
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (19 bp):
ATTGTATCGATACAAAACT
Found at i:1206599 original size:88 final size:87
Alignment explanation
Indices: 1206518--1206779 Score: 287
Period size: 88 Copynumber: 3.0 Consensus size: 87
1206508 ATGGTTATCC
* *
1206518 CCTTAGTCAAATTCATTT-ATTTTTGATTTGATGTATGGTTACTTTCTTGGTCAAATCTGCCTCT
1 CCTTGGTCAAATTCATTTCA-TTTTGATTTGATGTATGGTTACATTCTTGGTCAAATCTGCCTCT
* *
1206582 CTCCTGTGTGATGTATGGGTACTA
65 CTCCTGTCTGAT-TATGGTTACTA
* * * * * * * *
1206606 CCTTGGTCAAATTCTTTTCATTTCGATTTGATGCATGGTTACCA-ACCTGCTCAAATTTACCTCT
1 CCTTGGTCAAATTCATTTCATTTTGATTTGATGTATGGTTA-CATTCTTGGTCAAATCTGCCTCT
* *
1206670 TTCCTCTCTGACTTATGGTTACTA
65 CTCCTGTCTGA-TTATGGTTACTA
* * *
1206694 CCTTGGTTAAATTCATTTCATTTTGATTTGACGTATGGTTACAATT-TTGGTCAAATCTGTCTCT
1 CCTTGGTCAAATTCATTTCATTTTGATTTGATGTATGGTTAC-ATTCTTGGTCAAATCTGCCTCT
*
1206758 CTCCTGTCTGACATATGGTTAC
65 CTCCTGTCTGA-TTATGGTTAC
1206780 CACCCACGTT
Statistics
Matches: 141, Mismatches: 28, Indels: 10
0.79 0.16 0.06
Matches are distributed among these distances:
87 1 0.01
88 137 0.97
89 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (87 bp):
CCTTGGTCAAATTCATTTCATTTTGATTTGATGTATGGTTACATTCTTGGTCAAATCTGCCTCTC
TCCTGTCTGATTATGGTTACTA
Found at i:1207320 original size:44 final size:44
Alignment explanation
Indices: 1206955--1207813 Score: 298
Period size: 44 Copynumber: 19.7 Consensus size: 44
1206945 CTAGTTAGAG
* *
1206955 TCTTTTCATT-CTAATTTGATGTATAGTTACCACCCTGGTCAAAT
1 TCTTTTCATTCCT-ATTTGATGTATGGTTACCACCCTGGTCAGAT
* * * *
1206999 CTACCTTT--TTCCTATTGGATGTATGGTTACCACCCCGGTTAGAT
1 -T-CTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* * * * * * *
1207043 TATTTTTATTTCAATTCGA--CAT--ATACCACCCTGGTCA-AT
1 TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* * * * * * *
1207082 CTCTCTTCTTTCTTGTCTAATGTATGGTTGCCACCCTGGTCAGAT
1 -TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* * *
1207127 TCTTTTCACT-CTGATTTGTTGTATGGTTACCACCCTTGTCA-AT
1 TCTTTTCATTCCT-ATTTGATGTATGGTTACCACCCTGGTCAGAT
** * * * * * * *
1207170 T-TTGCCA--CCT-TGTCTTACGTATGGTAACAACCTTAGTCAAAT
1 TCTTTTCATTCCTAT-T-TGATGTATGGTTACCACCCTGGTCAGAT
* *** * * * *
1207212 TCATTTCATTTAGAATTG-TCGTATGGTTACCATCTTGGTCA-AA
1 TCTTTTCATTCCTATTTGAT-GTATGGTTACCACCCTGGTCAGAT
** * * *
1207255 TCTACCTCTTTCC-AGTCTGATGTATGGTTACCACCTTGGTCAGAT
1 TCT-TTTCATTCCTA-TTTGATGTATGGTTACCACCCTGGTCAGAT
* *
1207300 TCTTTTCATTCCTATTTGATGTATGGTTACCAACCTAGTCAGAT
1 TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* * * * * * * * *
1207344 TCTTTCCTTTTCGATTTGACGCATGGTTACCACCCCGGTTAAAT
1 TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
** * * * * *
1207388 T-TGTCTCTC-TT-CTACCTAACGTATGGTTACCACCCTAGTAAGAA
1 TCT-T-T-TCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* * * * *
1207432 TCTTTTCATTTCGATTTGATGTATGGTTATCACGCTGGTCA-AA
1 TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* * * * * *
1207475 TC--TCCCTCTCTCTTTTCTGACGTATGGTTACCACCTTGGTCAAAT
1 TCTTTTCAT-TC-CTATT-TGATGTATGGTTACCACCCTGGTCAGAT
* * * * * * *
1207520 TCATTTCATTTCGATTTG-TCGTATGGTTACCATCTTGGCCA-AA
1 TCTTTTCATTCCTATTTGAT-GTATGGTTACCACCCTGGTCAGAT
* * * ** * *
1207563 T-TTGTCACTTTCTTTTGTGACATAAGGTTACCACCCTAGTCAGAT
1 TCTTTTCA-TTCCTATT-TGATGTATGGTTACCACCCTGGTCAGAT
* * * * *
1207608 TCTTTTTATTCCTATTTGACGTATGGCTACCACCTTGGTCA-AA
1 TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
** * * * *
1207651 TCTACCTC-TCTCCTATCTAACGTATGGTTACCACCCTAGTCAGAT
1 TCT-TTTCAT-TCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* * * ** * *
1207696 TCTATTCATTTCGATTTGACATATGGTTACCACCCTGGTCAAAC
1 TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
** * * * * *
1207740 TCTCCTCTTTCCTATCTGACGTATGGTTACGACACTGGTCAGAT
1 TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
* *
1207784 TCATTTCATTCCGATTTGATGTATGGTTAC
1 TCTTTTCATTCCTATTTGATGTATGGTTAC
1207814 TATCCTTGTC
Statistics
Matches: 579, Mismatches: 188, Indels: 95
0.67 0.22 0.11
Matches are distributed among these distances:
39 3 0.01
40 21 0.04
41 23 0.04
42 21 0.04
43 36 0.06
44 427 0.74
45 35 0.06
46 10 0.02
47 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (44 bp):
TCTTTTCATTCCTATTTGATGTATGGTTACCACCCTGGTCAGAT
Found at i:1207534 original size:176 final size:175
Alignment explanation
Indices: 1207320--1209552 Score: 1074
Period size: 176 Copynumber: 12.8 Consensus size: 175
1207310 CCTATTTGAT
* * * * *
1207320 GTATGGTTACCAACC-TAGTCAGATTCTTTCCTTTTCGATTTGACGCATGGTTACCACCCCGGTT
1 GTATGGTTACC-ACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTC
* * * *
1207384 AAATTTGTCTCTCTTCTACCTAACGTATGGTTACCACCCTAGTAAGAATCTTTTCATTTCGATTT
65 AAATCTGTCTCTCTTCTATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTCGATTT
* * * * * *
1207449 GATGTATGGTTATCACGCTGGTCAAATCTCCCTCTCTCTTTTCTGAC
130 GACGTATGGTTACCAC-CTGGTCAAATCTACCTCTCTCCTATCTAAC
* * * * * * *
1207496 GTATGGTTACCACCTTGGTCAAATTCATTTCATTTCGATTTGTCGTATGGTTACCATCTTGGCCA
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
* * * * * * * * * *
1207561 AATTTGTCACT-TTCTTTTGTGACATAAGGTTACCACCCTAGTCAGATTCTTTTTATTCCTATTT
66 AATCTGTCTCTCTTC-TATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTCGATTT
*
1207625 GACGTATGGCTACCACCTTGGTCAAATCTACCTCTCTCCTATCTAAC
130 GACGTATGGTTACCACC-TGGTCAAATCTACCTCTCTCCTATCTAAC
* * *
1207672 GTATGGTTACCACCCTAGTCAGATTCTATTCATTTCGATTTGACATATGGTTACCACCCTGGTCA
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
* * * * * * *
1207737 AA-CTCTC-CTCTTTCCTATCTGACGTATGGTTACGACACTGGTCAGATTCATTTCATTCCGATT
66 AATCTGTCTCTC-TT-CTATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTCGATT
* * * *
1207800 TGATGTATGGTTACTATCCTTGTCAAGTCTACCTCTCTCCTATCTAAC
129 TGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTCTCCTATCTAAC
* * * * * * * * *
1207848 ATATGGTTACTACATTGGTCACATTCTTTTCATTTTGATTTGACGTATGGTTATCATCTTGGTCA
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
** * * * *
1207913 AATCTACCTCTC-TCTTATATGATGTATGGTTACCACCATAG-ATAGATTATTTTCATTTTC-AT
66 AATCTGTCTCTCTTC-TATCTGACGTATGGTTACCACCCTAGTA-AGATTCTTTTCA-TTTCGAT
* ** * * *
1207975 TTGACATATGGTTACCACTCAAGTCAAACTCT-CTTCTTTCCTATCTGAC
128 TTGACGTATGGTTACCAC-CTGGTCAAA-TCTACCTCTCTCCTATCTAAC
* * * * * * ** * *
1208024 ATATAGTTACCACCTTTGTGAGATTTTTTTTATTTCGATTTGATTTAAGGTTACCACCCTGCTCA
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
** * * * ** * * * *
1208089 AATCTACCGGTCTC-T-TGTCTAACGTACGGTTACTTCCTTGGTAAAATTCTTTTCATTTCAATT
66 AATCTGTC--TCTCTTCTATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTCGATT
* * * * *
1208152 TGACGTATGGTTACCATCCTAGTCAAATCTGCCTCTCTCTTGTCTGAC
129 TGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTCTCCTATCTAAC
* * * * * * *
1208200 GTATGGTTACCACCCTGGTCAGATTTTTTTCATTCCAATTTGACCTATGGTTACCACCATGGGT-
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCT-GGTC
* * * * *
1208264 AAATCCAG-CAC-CTTCTTGTCTGACGTATGGATACCACCC-AGTTAGATTCTTTTCA-TTCTGA
65 AAAT-CTGTCTCTCTTC-TATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTC-GA
* * * * * ** *
1208325 TTTGGCGTATGATTACCACCCTGGTCAAGTCTACCACCCTTTTGTCTAAC
127 TTTGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTCTCCTATCTAAC
* ** * * * * * *
1208375 GTATGGTTACCACCTTAGTCAAATTCAATTCATTTCGAATTGATGTATGGTTACCATCTTGCTAA
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
* * * * * * * *
1208440 AATTTGCCTCTCTCCCT-TGTGATGTATGGTTACTACCTTGGTCAA-ATTCTTTTCATTTCGATT
66 AATCTGTCTCTCT-TCTATCTGACGTATGGTTACCACCCTAGT-AAGATTCTTTTCATTTCGATT
* * * * * * * * * *
1208503 TGACATATTGTTACCATCTTGTTCAAATTTGCTTCTTTCCTACCTGAC
129 TGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTCTCCTATCTAAC
** * * * * * * * * **
1208551 ACAAGGATAACAACC-TATTCTGATTCTTTTTATTCCTG-TTTGATGTATGGTTACCACCCTCTT
1 GTATGG-TTACCACCTTAGTCAGATTCTTTTCATTTC-GATTTGACGTATGGTTACCACCCTGGT
* *** * * * *
1208614 TAAATCCACCTC-CTTCCTATCTGACGTATGGTTACCACCCTGGTCAGATTCTTCTCA-TTCTAA
64 CAAATCTGTCTCTCTT-CTATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTC-GA
* * * * * * * * *
1208677 TTTGACGTATGGTAACTACCCTAGTGAAATCCACCTC-CTTCTTGTTTGAC
127 TTTGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTC-TCCTATCTAAC
* * * * ** *
1208727 GTATGGTTACCACCATGGTCTA-ATTCTTTTCATTCCTATTTGACACATGGTTACCACCCTAGTC
1 GTATGGTTACCACCTTAGTC-AGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTC
* * * * ** *
1208791 AAATC---CAC-CTCCT-TC-G-TGT-T--TGA-CA---T-GTCGGATTC-TTTCATTTCGAATT
65 AAATCTGTCTCTCTTCTATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTCGATTT
* * * ** * ** *
1208840 GACGCATGGTTACCAGCCTGGTTAAATTTGTCTCCCTTATATCTAAG
130 GACGTATGGTTACCA-CCTGGTCAAATCTACCTCTCTCCTATCTAAC
* * * * * * * *
1208887 GTATGGTTACCACCCT-GGCTAAATTCTTTTCA-TTCTAATTTGGCATATGATTACCACCTTGGT
1 GTATGGTTACCACCTTAGTC-AGATTCTTTTCATTTC-GATTTGACGTATGGTTACCACCCTGGT
* * * * * * * * *
1208950 C-AATTTGCCTCTC-TCTTATCTTACGTATGGTTACCTGCCTTGGTCAGATTCTTTTTATTTTGA
64 CAAATCTGTCTCTCTTC-TATCTGACGTATGGTTACC-ACCCTAGTAAGATTCTTTTCATTTCGA
* ** * * * *
1209013 TTTGACATATGGTTACCACCCAAGTCAAACTCT-CCTC-CTTCTTGTTTGAC
127 TTTGACGTATGGTTACCA-CCTGGTCAAA-TCTACCTCTC-TCCTATCTAAC
* * * ** * *
1209063 ATATGGTTATCACTCTTA-TCAAATT-TTTT--TGTTCGAATTTGATTTATGGTTGCCACCCTGC
1 GTATGGTTACCAC-CTTAGTCAGATTCTTTTCAT-TTCG-ATTTGACGTATGGTTACCACCCTGG
* * * *
1209124 TCAAATCCACT-TCTCTC-T-TATCTGACATATGGTTACTACCCTGGTAAAATTCTTTTCATTTC
63 TCAAAT---CTGTCTCTCTTCTATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTC
* * ** * ** * * *
1209186 GATTTGACATATGGTTTCCATATTGGTCAAATCT-CCCCTCTTTTGTCTCAT
125 GATTTGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTCTCCTATCTAAC
* ** * * * * * * *
1209237 GTATGGTTACCACCCTAGTTTGATTCTTTTCATTCCTATTTAACCTAT-GCTACCACCTTGGGCA
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
*** * * * *
1209301 AATCCACCTC-CTTCTTATCTGATGTATGGTTACCACCCTGGTCAGATTCTTTTCA-TTCTAATT
66 AATCTGTCTCTCTTC-TATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTC-GATT
* * * * * * * * *
1209364 TGATGTATGATTAGCACCCTGGTCAAATATACCACCCACATGTCTAAC
129 TGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTCTCCTATCTAAC
* * * * * * * * * **
1209412 CTATGGTTACCACCTTGGTCAAATCCATTTCTTTTTGATTTGACGTATGGTTACCATCTTGGTGT
1 GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
* * * * *
1209477 AATCTGCCTCTCTCTT-T-TGTGATGTATGGTTACTACCTTAGTCAA-ATTCTTTTCATTTCAAT
66 AATCTG--TCTCTCTTCTATCTGACGTATGGTTACCACCCTAGT-AAGATTCTTTTCATTTCGAT
1209539 TTGACGTATGGTTA
128 TTGACGTATGGTTA
1209553 AGGTTACCAC
Statistics
Matches: 1536, Mismatches: 428, Indels: 186
0.71 0.20 0.09
Matches are distributed among these distances:
159 9 0.01
160 83 0.05
161 12 0.01
162 4 0.00
163 2 0.00
164 2 0.00
165 2 0.00
166 4 0.00
167 1 0.00
168 1 0.00
169 4 0.00
170 2 0.00
171 4 0.00
172 6 0.00
173 11 0.01
174 112 0.07
175 293 0.19
176 923 0.60
177 40 0.03
178 17 0.01
179 4 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (175 bp):
GTATGGTTACCACCTTAGTCAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCA
AATCTGTCTCTCTTCTATCTGACGTATGGTTACCACCCTAGTAAGATTCTTTTCATTTCGATTTG
ACGTATGGTTACCACCTGGTCAAATCTACCTCTCTCCTATCTAAC
Found at i:1207788 original size:264 final size:262
Alignment explanation
Indices: 1207324--1209552 Score: 1091
Period size: 264 Copynumber: 8.5 Consensus size: 262
1207314 TTTGATGTAT
* * * * * ** * *
1207324 GGTTACCAACCTAGTCAGATTCTTTCCTTTTCGATTTGACGCATGGTTACCACCCCGGTTAAATT
1 GGTTACCACCCTAGTCAGATTCTTTTC-ATTCTATTTGACGTATGGTTACCACCTTGGTCAAATC
** * * * * **
1207389 TGTCTCTCTTCTACCTAACGTATGGTTACCACCCTAGTAAGAATCTTTTCATTTCGATTTGATGT
65 TACCTCTCTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACAT
* * * * * *
1207454 ATGGTTATCACGCTGGTCAAA-TCTCCCTCTCTCTTTTCTGACGTATGGTTACCACCTTGGTCAA
130 ATGGTTACCACCCTGGTCAAACTCT-CCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTCAG
* ** * * * *
1207518 ATTCATTTCATTTCGATTTG-TCGTATGGTTACCATCTTGGCCAAATTTGTCACTTTCTTTTGTG
194 ATTCATTTCATTTCGATTTGAT-GTATGGTTACCATCTT-GCCAAATCTACCACTCTCTTATCTA
1207582 ACATAA
257 ACATAA
* *
1207588 GGTTACCACCCTAGTCAGATTCTTTTTATTCCTATTTGACGTATGGCTACCACCTTGGTCAAATC
1 GGTTACCACCCTAGTCAGATTCTTTTCATT-CTATTTGACGTATGGTTACCACCTTGGTCAAATC
*
1207653 TACCTCTCTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTATTCATTTCGATTTGACAT
65 TACCTCTCTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACAT
*
1207718 ATGGTTACCACCCTGGTCAAACTCTCCTCTTTCCTATCTGACGTATGGTTACGACAC-TGGTCAG
130 ATGGTTACCACCCTGGTCAAACTCTCCTCTTTCCTATCTGACGTATGGTTACCAC-CTTGGTCAG
* * * * * *
1207782 ATTCATTTCATTCCGATTTGATGTATGGTTACTATCCTTGTCAAGTCTACCTCTCTCCTATCTAA
194 ATTCATTTCATTTCGATTTGATGTATGGTTACCAT-CTTGCCAAATCTACCACTCTCTTATCTAA
*
1207847 CATAT
258 CATAA
* ** * * * * *
1207852 GGTTACTACATTGGTCACATTCTTTTCATTTTGATTTGACGTATGGTTATCATCTTGGTCAAATC
1 GGTTACCACCCTAGTCAGATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCTTGGTCAAATC
* * * * * *
1207917 TACCTCTCTCTTATATGATGTATGGTTACCACCATAGAT-AGATTATTTTCATTTTC-ATTTGAC
65 TACCTCTCTCCTATCTAACGTATGGTTACCACCCTAG-TCAGATTCTTTTCA-TTTCGATTTGAC
* ** * * * * *
1207980 ATATGGTTACCACTCAAGTCAAACTCTCTTCTTTCCTATCTGACATATAGTTACCACCTTTGTGA
128 ATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTCA
** * * * * * ** *
1208045 GATTTTTTTTATTTCGATTTGATTTAAGGTTACCACCCTGCTCAAATCTACCGGTCTCTTGTCTA
193 GATTCATTTCATTTCGATTTGATGTATGGTTACCATCTTGC-CAAATCTACCACTCTCTTATCTA
* *
1208110 ACGTAC
257 ACATAA
** * * * * * *
1208116 GGTTACTTCCTTGGTAAAATTCTTTTCATTTCAATTTGACGTATGGTTACCATCC-TAGTCAAAT
1 GGTTACCACCCTAGTCAGATTCTTTTCA-TTCTATTTGACGTATGGTTACCA-CCTTGGTCAAAT
* * * * * * * * *
1208180 CTGCCTCTCTCTTGTCTGACGTATGGTTACCACCCTGGTCAGATTTTTTTCATTCCAATTTGACC
64 CTACCTCTCTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACA
* * * * * * **
1208245 TATGGTTACCACCATGGGT-AAA-TC-CAGCACCTTCTTGTCTGACGTATGGATACCACC-CAGT
129 TATGGTTACCACCCT-GGTCAAACTCTC--CTCTTTCCTATCTGACGTATGGTTACCACCTTGGT
* * ** * * * * * * * *
1208306 TAGATTCTTTTCA-TTCTGATTTGGCGTATGATTACCACCCTGGTCAAGTCTACCACCCTTTTGT
191 CAGATTCATTTCATTTC-GATTTGATGTATGGTTACCA-TCTTGCCAAATCTACCACTCTCTTAT
* *
1208370 CTAACGTAT
254 CTAACATAA
* * ** * * * * * * *
1208379 GGTTACCACCTTAGTCAAATTCAATTCATTTCGAATTGATGTATGGTTACCATCTTGCTAAAATT
1 GGTTACCACCCTAGTCAGATTCTTTTCA-TTCTATTTGACGTATGGTTACCACCTTGGTCAAATC
* * * * * * * *
1208444 TGCCTCTCTCCCT-TGTGATGTATGGTTACTACCTTGGTCAAATTCTTTTCATTTCGATTTGACA
65 TACCTCTCT-CCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACA
* * * * * * * ** * * *
1208508 TATTGTTACCATCTTGTTCAAA-TTTGCTTCTTTCCTACCTGACACAAGGATAACAACCTAT--T
129 TATGGTTACCACCCTGGTCAAACTCT-CCTCTTTCCTATCTGACGTATGG-TTACCACCT-TGGT
* * * * * * * *
1208570 CTGATTCTTTTTATTCCTG-TTTGATGTATGGTTACCACCCTCTT--TAAATCCACCTC-CTTCC
191 CAGATTCATTTCATTTC-GATTTGATGTATGGTTACCA---TCTTGCCAAATCTACCACTC-TCT
* * *
1208631 TATCTGACGTAT
251 TATCTAACATAA
* * * * * * *
1208643 GGTTACCACCCTGGTCAGATTCTTCTCATTCTAATTTGACGTATGGTAACTACCCTAGTGAAATC
1 GGTTACCACCCTAGTCAGATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCTTGGTCAAATC
* * * * * * * * *
1208708 CACCTC-CTTCTTGTTTGACGTATGGTTACCACCATGGTCTA-ATTCTTTTCATTCCTATTTGAC
65 TACCTCTC-TCCTATCTAACGTATGGTTACCACCCTAGTC-AGATTCTTTTCATTTCGATTTGAC
* * * *
1208771 ACATGGTTACCACCCTAGTCAAA-TC-CAC-C--TCCT-TC-G-TGT-T--TGA-CA---T-GTC
128 ATATGGTTACCACCCTGGTCAAACTCTC-CTCTTTCCTATCTGACGTATGGTTACCACCTTGGTC
* * * * * * ** * ** * *
1208820 GGATTC-TTTCATTTCGAATTGACGCATGGTTACCAGCCTGGTTAAATTTGTCTCCCT-TATATC
192 AGATTCATTTCATTTCGATTTGATGTATGGTTACCA-TCTTGCCAAATCTACCACTCTCT-TATC
** *
1208883 TAAGGTAT
255 TAACATAA
* * * * *
1208891 GGTTACCACCCT-GGCTAAATTCTTTTCATTCTAATTTGGCATATGATTACCACCTTGGTC-AAT
1 GGTTACCACCCTAGTC-AGATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCTTGGTCAAAT
* * * * * * * * *
1208954 TTGCCTCTCTCTTATCTTACGTATGGTTACCTGCCTTGGTCAGATTCTTTTTATTTTGATTTGAC
64 CTACCTCTCTCCTATCTAACGTATGGTTACC-ACCCTAGTCAGATTCTTTTCATTTCGATTTGAC
** * * * * * * *
1209019 ATATGGTTACCACCCAAGTCAAACTCTCCTCCTTCTTGTTTGACATATGGTTATCACTCTT-ATC
128 ATATGGTTACCACCCTGGTCAAACTCTCCTCTTTCCTATCTGACGTATGGTTACCAC-CTTGGTC
* * * * * * * **
1209083 AAATT--TTT-TTGTTCGAATTTGATTTATGGTTGCCACCCTGCTCAAATCCACTTCTCTCTTAT
192 AGATTCATTTCAT-TTCG-ATTTGATGTATGGTTACCATCTTGC-CAAATCTACCACTCTCTTAT
* *
1209145 CTGACATAT
254 CTAACATAA
* * * * * * * **
1209154 GGTTACTACCCTGGTAAAATTCTTTTCATTTCGATTTGACATATGGTTTCCATATTGGTCAAATC
1 GGTTACCACCCTAGTCAGATTCTTTTCA-TTCTATTTGACGTATGGTTACCACCTTGGTCAAATC
* ** * * * ** * * * *
1209219 T-CCCCTCTTTTGTCTCATGTATGGTTACCACCCTAGTTTGATTCTTTTCATTCCTATTTAACCT
65 TACCTCTCTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACAT
* * * * * * * *
1209283 AT-GCTACCACCTTGGGCAAA-TCCACCTCCTTCTTATCTGATGTATGGTTACCACCCTGGTCAG
130 ATGGTTACCACCCTGGTCAAACT-CTCCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTCAG
* * * * * * * * * * * *
1209346 ATTCTTTTCA-TTCTAATTTGATGTATGATTAGCACCCTGGTCAAATATACCACCCACATGTCTA
194 ATTCATTTCATTTC-GATTTGATGTATGGTTACCA-TCTTGCCAAATCTACCACTCTCTTATCTA
* *
1209410 ACCTAT
257 ACATAA
* * * * * * * * **
1209416 GGTTACCACCTTGGTCAAATCCATTTCTTTTTGATTTGACGTATGGTTACCATCTTGGTGTAATC
1 GGTTACCACCCTAGTCAGATTCTTTTCATTCT-ATTTGACGTATGGTTACCACCTTGGTCAAATC
* * * * * * * * * * *
1209481 TGCCTCTCTCTTTTGTGATGTATGGTTACTACCTTAGTCAAATTCTTTTCATTTCAATTTGACGT
65 TACCTCTCTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACAT
1209546 ATGGTTA
130 ATGGTTA
1209553 AGGTTACCAC
Statistics
Matches: 1498, Mismatches: 388, Indels: 158
0.73 0.19 0.08
Matches are distributed among these distances:
246 2 0.00
247 30 0.02
248 135 0.09
249 11 0.01
250 2 0.00
252 4 0.00
253 3 0.00
254 1 0.00
255 1 0.00
256 1 0.00
258 3 0.00
259 3 0.00
260 7 0.00
261 48 0.03
262 132 0.09
263 361 0.24
264 727 0.49
265 24 0.02
266 3 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (262 bp):
GGTTACCACCCTAGTCAGATTCTTTTCATTCTATTTGACGTATGGTTACCACCTTGGTCAAATCT
ACCTCTCTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTCGATTTGACATA
TGGTTACCACCCTGGTCAAACTCTCCTCTTTCCTATCTGACGTATGGTTACCACCTTGGTCAGAT
TCATTTCATTTCGATTTGATGTATGGTTACCATCTTGCCAAATCTACCACTCTCTTATCTAACAT
AA
Found at i:1208370 original size:87 final size:88
Alignment explanation
Indices: 1207320--1208795 Score: 602
Period size: 88 Copynumber: 16.8 Consensus size: 88
1207310 CCTATTTGAT
* * * * * * *
1207320 GTATGGTTACCAACCTAGTCAGATTC-TTTCCTTTTCGATTTGACGCATGGTTACCACCCCGGTT
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-AATTTGACGTATGGTTACCACCCTGGTC
* ** * * * ** *
1207384 AAATTTGTCTCTCTTCTACCTAAC
65 AAATCTACCACCCTTTTGTCTGAC
* * * * * *
1207408 GTATGGTTACCACCCTAGTAAGAATCTTTTCATT-TCGATTTGATGTATGGTTATCACGCTGGTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-AATTTGACGTATGGTTACCACCCTGGTC
* * *
1207472 AAATCTCCCTCTCTCTTT-TCTGAC
65 AAATCTACCACCCT-TTTGTCTGAC
* * * * * * * * *
1207496 GTATGGTTACCACCTTGGTCAAATTCATTTCATT-TCGATTTGTCGTATGGTTACCATCTTGGCC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-AATTTGACGTATGGTTACCACCCTGGTC
* ** *
1207560 AAATTTGTCACTTTCTTTTG--TGAC
65 AAATCTACCAC--CCTTTTGTCTGAC
* * * * *
1207584 ATAAGGTTACCACCCTAGTCAGATTCTTTTTATTCCT-ATTTGACGTATGGCTACCACCTTGGTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATT-CTAATTTGACGTATGGTTACCACCCTGGTC
* * ** * *
1207648 AAATCTACCTCTCTCCTATCTAAC
65 AAATCTACCACCCTTTTGTCTGAC
* * *
1207672 GTATGGTTACCACCCTAGTCAGATTCTATTCATT-TCGATTTGACATATGGTTACCACCCTGGTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-AATTTGACGTATGGTTACCACCCTGGTC
* *
1207736 AAA-CT-CTC-CTCTTTCCTATCTGAC
65 AAATCTAC-CACCCTTT--TGTCTGAC
* * * * ** * * * *
1207760 GTATGGTTACGACACTGGTCAGATTCATTTCATTCCGATTTGATGTATGGTTACTATCCTTGTCA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGACGTATGGTTACCACCCTGGTCA
* * * ** * *
1207825 AGTCTACCTCTCTCCTATCTAAC
66 AATCTACCACCCTTTTGTCTGAC
* * ** * * * * * * *
1207848 ATATGGTTACTACATTGGTCACATTCTTTTCATTTTGATTTGACGTATGGTTATCATCTTGGTCA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGACGTATGGTTACCACCCTGGTCA
* * * * * *
1207913 AATCTACCTCTCTCTTATATGAT
66 AATCTACCACCCTTTTGTCTGAC
* * * * * * **
1207936 GTATGGTTACCACCATAGAT-AGATTATTTTCATTTTCATTTGACATATGGTTACCACTCAAGTC
1 GTATGGTTACCACCCTAG-TCAGATTCTTTTCATTCTAATTTGACGTATGGTTACCACCCTGGTC
** *
1208000 AAA-CT-CTC-TTCTTTCCTATCTGAC
65 AAATCTAC-CACCCTTT--TGTCTGAC
* * * * * * * * ** * *
1208024 ATATAGTTACCACCTTTGTGAGATTTTTTTTATT-TCGATTTGATTTAAGGTTACCACCCTGCTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-AATTTGACGTATGGTTACCACCCTGGTC
*** * *
1208088 AAATCTACCGGTCTCTTGTCTAAC
65 AAATCTACCACCCTTTTGTCTGAC
* ** * * * * * *
1208112 GTACGGTTACTTCCTTGGTAAAATTCTTTTCATT-TCAATTTGACGTATGGTTACCATCCTAGTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-AATTTGACGTATGGTTACCACCCTGGTC
* * * *
1208176 AAATCTGCCTCTCTCTTGTCTGAC
65 AAATCTACCACCCTTTTGTCTGAC
* * * * *
1208200 GTATGGTTACCACCCTGGTCAGATTTTTTTCATTCCAATTTGACCTATGGTTACCACCATGGGT-
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGACGTATGGTTACCACCCT-GGTC
* *
1208264 AAATCCAGCA-CCTTCTTGTCTGAC
65 AAATCTACCACCCTT-TTGTCTGAC
* * * * *
1208288 GTATGGATACCACCC-AGTTAGATTCTTTTCATTCTGATTTGGCGTATGATTACCACCCTGGTCA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGACGTATGGTTACCACCCTGGTCA
* *
1208352 AGTCTACCACCCTTTTGTCTAAC
66 AATCTACCACCCTTTTGTCTGAC
* * ** * * * * * *
1208375 GTATGGTTACCACCTTAGTCAAATTCAATTCATTTCGAA-TTGATGTATGGTTACCATCTTGCTA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCA-TTCTAATTTGACGTATGGTTACCACCCTGGTC
* * * ** *
1208439 AAATTTGCCTCTCTCCCTTG--TGAT
65 AAATCTACCAC-C-CTTTTGTCTGAC
* * * * * * * * * *
1208463 GTATGGTTACTACCTTGGTCAAATTCTTTTCATT-TCGATTTGACATATTGTTACCATCTTGTTC
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCT-AATTTGACGTATGGTTACCACCCTGGTC
** ** **
1208527 AAAT-TTGC-TTCTTTCCTACCTGAC
65 AAATCTACCACCCTTT--TGTCTGAC
** * * * * * * * * * ** *
1208551 ACAAGGATAACAACCTATTCTGATTCTTTTTATTCCT-GTTTGATGTATGGTTACCACCCTCTTT
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATT-CTAATTTGACGTATGGTTACCACCCTGGTC
* * * *
1208615 AAATCCACC-TCCTTCCTATCTGAC
65 AAATCTACCACCCTT-TTGTCTGAC
* * * * * *
1208639 GTATGGTTACCACCCTGGTCAGATTCTTCTCATTCTAATTTGACGTATGGTAACTACCCTAGTGA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGACGTATGGTTACCACCCTGGTCA
* * *
1208704 AATCCACC-TCCTTCTTGTTTGAC
66 AATCTACCACCCTT-TTGTCTGAC
* * ** *
1208727 GTATGGTTACCACCATGGTCTA-ATTCTTTTCATTCCT-ATTTGACACATGGTTACCACCCTAGT
1 GTATGGTTACCACCCTAGTC-AGATTCTTTTCATT-CTAATTTGACGTATGGTTACCACCCTGGT
1208790 CAAATC
64 CAAATC
1208796 CACCTCCTTC
Statistics
Matches: 1058, Mismatches: 281, Indels: 98
0.74 0.20 0.07
Matches are distributed among these distances:
84 2 0.00
86 19 0.02
87 80 0.08
88 905 0.86
89 33 0.03
90 19 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (88 bp):
GTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGACGTATGGTTACCACCCTGGTCA
AATCTACCACCCTTTTGTCTGAC
Found at i:1208815 original size:44 final size:44
Alignment explanation
Indices: 1208583--1208814 Score: 187
Period size: 44 Copynumber: 5.3 Consensus size: 44
1208573 ATTCTTTTTA
* * ** *
1208583 TTCCTGTTTGATGTATGGTTACCACCCTCTTTAAATCCACCTCC
1 TTCCTATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTCC
* * * * ** *
1208627 TTCCTATCTGACGTATGGTTACCACCCTGGTCAGATTCTTCTCA
1 TTCCTATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTCC
* * *
1208671 TT-CTAATTTGACGTATGGTAACTACCCTAGTGAAATCCACCTCC
1 TTCCT-ATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTCC
* * * * * * *** *
1208715 TTCTTGTTTGACGTATGGTTACCACCATGGTCTAATTCTTTTCA
1 TTCCTATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTCC
**
1208759 TTCCTATTTGACACATGGTTACCACCCTAGTCAAATCCACCTCC
1 TTCCTATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTCC
* *
1208803 TTCGTGTTTGAC
1 TTCCTATTTGAC
1208815 ATGTCGGATT
Statistics
Matches: 138, Mismatches: 48, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
43 2 0.01
44 135 0.98
45 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (44 bp):
TTCCTATTTGACGTATGGTTACCACCCTAGTCAAATCCACCTCC
Found at i:1209242 original size:87 final size:89
Alignment explanation
Indices: 1208887--1209552 Score: 333
Period size: 88 Copynumber: 7.6 Consensus size: 89
1208877 TATATCTAAG
* * *
1208887 GTATGGTTACCACCCTGG-CTAAATTCTTTTCA-TTCTAATTTGGCATATGATTACCACCTTGGT
1 GTATGGTTACCACCCTGGTC-AAATTCTTTTCATTTC-AATTTGACGTATGGTTACCACCTTGGT
* * * * * * *
1208950 C-AATTTGCC-TCTCTCTTATCTTAC
64 CAAATCTACCACCTCTTTTGTCTGAT
* * * * ** * ***
1208974 GTATGGTTACCTGCCTTGGTCAGATTCTTTTTATTTTGATTTGACATATGGTTACCACCCAAGTC
1 GTATGGTTACC-ACCCTGGTCAAATTCTTTTCATTTCAATTTGACGTATGGTTACCACCTTGGTC
* * * *
1209039 AAACTCT-CCTCCT-TCTTGTTTGAC
65 AAA-TCTACCACCTCTTTTGTCTGAT
* * * ** ** * * *
1209063 ATATGGTTATCACTCTTATCAAATT-TTTT--TGTTCGAATTTGATTTATGGTTGCCACCCTGCT
1 GTATGGTTACCACCCTGGTCAAATTCTTTTCAT-TTC-AATTTGACGTATGGTTACCACCTTGGT
* ** * * *
1209125 CAAATCCA-CTTCTCTCTTATCTGAC
64 CAAATCTACCACCTCTTTTGTCTGAT
* * * * * * **
1209150 ATATGGTTACTACCCTGGTAAAATTCTTTTCATTTCGATTTGACATATGGTTTCCATATTGGTCA
1 GTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCAATTTGACGTATGGTTACCACCTTGGTCA
*
1209215 AATCT-CC-CCTCTTTTGTCTCAT
66 AATCTACCACCTCTTTTGTCTGAT
* *** * * * * * *
1209237 GTATGGTTACCACCCTAGTTTGATTCTTTTCATTCCTATTTAACCTAT-GCTACCACCTTGGGCA
1 GTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCAATTTGACGTATGGTTACCACCTTGGTCA
* * * *
1209301 AATCCACCTCCT-TCTTATCTGAT
66 AATCTACCACCTCTTTTGTCTGAT
* * * * *
1209324 GTATGGTTACCACCCTGGTCAGATTCTTTTCA-TTCTAATTTGATGTATGATTAGCACCCTGGTC
1 GTATGGTTACCACCCTGGTCAAATTCTTTTCATTTC-AATTTGACGTATGGTTACCACCTTGGTC
* *** * *
1209388 AAATATACCACC-CACATGTCTAAC
65 AAATCTACCACCTCTTTTGTCTGAT
* * * * * ** * **
1209412 CTATGGTTACCACCTTGGTCAAATCCATTTCTTTTTGATTTGACGTATGGTTACCATCTTGGTGT
1 GTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCAATTTGACGTATGGTTACCACCTTGGTCA
* *
1209477 AATCTGCCTCTCTCTTTTG--TGAT
66 AATCTACCAC-CTCTTTTGTCTGAT
* * *
1209500 GTATGGTTACTACCTTAGTCAAATTCTTTTCATTTCAATTTGACGTATGGTTA
1 GTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCAATTTGACGTATGGTTA
1209553 AGGTTACCAC
Statistics
Matches: 430, Mismatches: 127, Indels: 43
0.72 0.21 0.07
Matches are distributed among these distances:
85 1 0.00
86 25 0.06
87 162 0.38
88 204 0.47
89 30 0.07
90 8 0.02
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (89 bp):
GTATGGTTACCACCCTGGTCAAATTCTTTTCATTTCAATTTGACGTATGGTTACCACCTTGGTCA
AATCTACCACCTCTTTTGTCTGAT
Found at i:1209461 original size:44 final size:44
Alignment explanation
Indices: 1209413--1209552 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
1209403 ATGTCTAACC
1209413 TATGGTTACCACCTTGGTCAAATCCATTTCTTTTTGATTTGACG
1 TATGGTTACCACCTTGGTCAAATCCATTTCTTTTTGATTTGACG
* ** * * *
1209457 TATGGTTACCATCTTGGTGTAATCTGCCTCTCTCTTTTG---TGATG
1 TATGGTTACCACCTTGGTCAAATC--CATTTCT-TTTTGATTTGACG
* * * * * **
1209501 TATGGTTACTACCTTAGTCAAATTCTTTTCATTTCAATTTGACG
1 TATGGTTACCACCTTGGTCAAATCCATTTCTTTTTGATTTGACG
1209545 TATGGTTA
1 TATGGTTA
1209553 AGGTTACCAC
Statistics
Matches: 72, Mismatches: 18, Indels: 12
0.71 0.18 0.12
Matches are distributed among these distances:
41 3 0.04
42 4 0.06
44 55 0.76
46 5 0.07
47 5 0.07
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (44 bp):
TATGGTTACCACCTTGGTCAAATCCATTTCTTTTTGATTTGACG
Found at i:1209703 original size:88 final size:87
Alignment explanation
Indices: 1209554--1209726 Score: 213
Period size: 88 Copynumber: 2.0 Consensus size: 87
1209544 GTATGGTTAA
* * ** *
1209554 GGTTACCACCCTAGTCAGATTTTTTCATTTCGATTTAACGTTTGTTTACCACACTAGTCAAATCC
1 GGTTAACACCCTAGTCAGATTTTTTCATTCCGATTTAACGCCTGGTTACCACACTAGTCAAATCC
*
1209619 ACCTCATTGCTATCTAACATAT
66 ACCTCATTCCTATCTAACATAT
* * * *
1209641 GGTTAACACCCTAGTTAGATTCTTTTCATTCCTATTTGATGCCTGGTTACCAC-CTTAGTCAAAT
1 GGTTAACACCCTAGTCAGATT-TTTTCATTCCGATTTAACGCCTGGTTACCACAC-TAGTCAAAT
* *
1209705 CCACCTCCTTCCTATTTAACAT
64 CCACCTCATTCCTATCTAACAT
1209727 GTTAGATTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 20 0.28
88 52 0.72
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (87 bp):
GGTTAACACCCTAGTCAGATTTTTTCATTCCGATTTAACGCCTGGTTACCACACTAGTCAAATCC
ACCTCATTCCTATCTAACATAT
Done.