genome.fa.s980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold980
Parameters: 2 7 7 80 10 50 1000
Length:  107474

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261--444	50	3.6	52	78	5	205	33	10	25	29	1.90
261--481	50	4.4	50	77	7	169	33	12	25	28	1.92
261--655	51	7.6	51	70	12	200	32	12	26	29	1.93
264--481	101	2.1	102	84	4	280	33	11	25	29	1.91
159--649	258	1.9	260	89	3	776	31	13	27	28	1.94
464--539	27	2.8	28	81	2	91	21	21	34	23	1.97
7597--7664	28	2.4	28	87	0	100	13	20	22	44	1.86
8008--8057	22	2.3	22	82	6	57	22	2	0	76	0.89
8566--8733	85	2.0	85	91	0	273	39	18	23	18	1.92
8685--9418	85	8.7	82	73	9	247	36	18	27	18	1.94
8558--9601	42	24.8	42	74	7	623	35	18	27	18	1.94
8766--9603	85	9.9	85	78	4	586	35	18	27	18	1.94
8754--9614	127	6.8	126	77	5	537	35	18	27	18	1.94
15461--15503	21	2.0	21	95	0	77	27	23	11	37	1.89
23394--23422	14	2.1	14	93	6	51	20	0	0	79	0.74
24088--24126	11	3.4	12	82	10	55	15	0	0	84	0.62
24088--24127	12	3.5	11	86	6	53	15	0	0	85	0.61
25312--25354	15	2.8	15	80	13	52	18	2	2	76	1.00
25292--25357	31	2.0	35	85	11	95	21	3	1	74	1.04
32518--32914	97	4.1	96	79	5	388	22	18	27	31	1.97
56136--56179	22	2.0	22	90	0	70	6	27	13	52	1.66
57777--57896	43	2.8	42	85	6	152	48	20	20	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57881--58262	168	2.3	169	88	2	563	33	18	29	18	1.95
57877--58302	42	10.1	42	74	7	335	34	18	30	17	1.94
57879--58288	84	4.9	84	84	1	507	33	18	29	18	1.95
67514--67566	20	2.6	21	82	8	65	30	16	15	37	1.90
67554--67578	13	1.9	13	100	0	50	36	16	16	32	1.90
74262--74344	43	2.0	41	88	9	123	28	20	24	26	1.99
74374--74433	16	3.9	15	77	12	50	21	1	5	71	1.14
75832--76154	159	2.0	158	89	6	490	25	14	12	47	1.78
78648--78701	24	2.3	23	78	15	56	62	11	0	25	1.28
78675--78972	73	4.1	72	76	12	229	55	11	2	30	1.50
78770--78968	70	2.8	71	81	8	206	53	11	3	32	1.53
79985--80052	24	2.7	24	72	18	66	55	0	1	42	1.08
80255--80313	19	3.2	18	76	11	57	49	0	3	47	1.18
81023--81060	2	19.0	2	88	0	58	44	0	2	52	1.14
81749--81786	19	2.0	19	94	0	67	63	13	10	13	1.53
85090--85150	22	2.7	21	80	10	59	59	1	3	36	1.24
85458--85514	30	1.9	30	100	0	114	33	26	10	29	1.90
88769--88797	9	3.3	9	90	9	51	10	0	0	89	0.48
88769--88803	8	4.2	8	92	3	52	8	2	0	88	0.61
88823--88847	2	12.5	2	100	0	50	52	0	0	48	1.00
89787--89843	17	3.4	17	78	4	53	49	10	0	40	1.37
92311--92366	20	2.9	19	76	10	53	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92311--92369	19	3.2	18	76	11	57	44	0	0	55	0.99
92642--92691	21	2.4	21	82	0	55	50	24	8	18	1.73
94190--94324	67	2.0	66	88	5	200	32	16	20	30	1.95
96922--96954	17	1.9	17	100	0	66	33	0	6	60	1.21
98077--98167	41	2.2	41	78	3	103	36	21	14	27	1.92
99358--99424	32	2.1	32	94	0	116	37	40	0	22	1.54
99415--99447	15	2.1	16	88	5	50	42	45	3	9	1.51

Tables:   1

The End!