genome.fa.s982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold982
Parameters: 2 7 7 80 10 50 1000
Length:  106087

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2247--2326	25	3.2	25	79	10	83	52	0	0	47	1.00
3400--3426	14	1.9	14	100	0	54	29	0	25	44	1.54
3738--3780	17	2.5	17	96	0	59	16	4	27	51	1.64
8795--8858	26	2.6	25	81	15	80	25	0	4	70	1.06
8799--8849	26	1.9	27	92	4	86	27	0	3	68	1.07
9558--9603	15	3.1	15	76	14	51	32	0	0	67	0.91
12970--13021	20	2.8	19	77	16	56	40	0	1	57	1.10
12968--13023	22	2.6	21	77	13	60	41	0	1	57	1.09
18969--19014	16	2.9	16	75	12	51	45	2	0	52	1.13
20440--20486	18	2.6	19	80	10	62	74	2	0	23	0.93
20435--20495	13	4.6	14	76	19	58	72	1	1	24	1.03
20681--20722	20	2.2	20	91	4	68	71	7	14	7	1.29
21970--22016	20	2.2	21	85	11	60	59	4	6	29	1.41
26203--26232	16	1.9	16	93	6	53	86	3	10	0	0.67
27462--27770	89	3.5	87	79	5	323	27	26	15	30	1.96
27930--28478	47	11.8	47	78	4	513	22	21	17	38	1.94
28506--30159	42	39.4	42	71	7	643	17	26	17	38	1.92
28498--30252	84	20.9	84	76	6	1067	17	26	17	38	1.92
28575--30253	126	13.3	125	72	8	990	17	25	17	38	1.92
29151--29529	207	1.8	210	83	4	507	18	26	17	37	1.93
30845--30895	13	4.0	13	72	12	52	70	1	0	27	0.98
31071--31128	21	2.7	21	84	13	73	74	8	13	3	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31065--31129	20	2.7	24	75	24	66	73	9	13	3	1.19
31259--31327	28	2.5	28	83	9	104	46	28	13	11	1.78
31367--31398	9	3.6	9	95	0	55	62	12	21	3	1.43
37155--37212	16	3.6	16	75	6	55	17	12	25	44	1.83
37832--37885	24	2.2	25	83	3	74	31	0	1	66	1.02
37803--37886	38	2.3	37	83	8	100	34	0	2	63	1.08
39127--39174	3	16.0	3	100	0	96	33	0	0	66	0.92
42876--42971	22	4.5	22	71	16	67	41	8	8	41	1.65
44928--44958	11	2.7	12	90	10	55	12	0	0	87	0.55
47800--47832	5	6.6	5	92	0	57	21	36	0	42	1.53
48286--48320	2	17.5	2	100	0	70	48	0	0	51	1.00
49149--49198	21	2.3	21	86	10	66	24	4	8	64	1.38
49357--49389	7	4.7	7	100	0	66	30	0	15	54	1.41
49489--49523	12	3.0	12	87	4	54	28	0	0	71	0.86
49511--49551	17	2.4	17	84	12	57	31	0	2	65	1.05
49486--49551	17	4.5	15	73	22	52	30	0	1	68	0.99
49723--49771	22	2.2	22	100	0	98	28	8	8	55	1.58
53301--53327	3	9.0	3	100	0	54	33	0	0	66	0.92
54035--54110	29	2.4	32	85	12	95	47	1	3	47	1.29
54120--54160	21	2.0	21	85	9	57	56	2	0	41	1.13
54440--54465	4	6.5	4	100	0	52	76	0	0	23	0.78
54717--54751	6	5.8	6	96	0	52	60	34	0	5	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59550--59593	16	2.8	17	83	16	60	59	0	0	40	0.98
59556--59618	29	2.1	29	82	8	74	52	0	0	47	1.00
59678--59721	22	2.0	22	82	4	54	54	2	0	43	1.12
59759--59797	14	2.8	14	88	0	51	58	0	0	41	0.98
59767--59808	14	2.8	15	76	23	52	64	0	0	35	0.94
60693--60724	13	2.5	13	94	0	55	34	6	0	59	1.23
60732--60773	14	3.2	13	80	13	50	45	4	2	47	1.36
61370--61411	21	2.0	22	85	4	59	42	2	9	45	1.49
64195--64226	12	2.6	13	85	14	50	40	0	0	59	0.97
64197--64247	23	2.4	20	77	9	57	33	1	1	62	1.17
64587--64628	19	2.2	19	86	0	57	19	2	0	78	0.86
64831--64864	17	1.9	18	88	5	52	52	0	5	41	1.25
65611--65681	13	5.1	14	70	26	53	28	0	0	71	0.86
65623--65687	11	5.7	11	80	7	76	29	0	0	70	0.87
65609--65681	24	3.1	23	81	12	78	28	0	0	71	0.87
65613--65686	35	2.2	33	90	7	114	29	0	0	70	0.88
65599--65686	40	2.2	39	82	13	101	31	0	0	68	0.90
66743--66814	25	2.8	26	76	18	87	66	2	1	29	1.14
67720--67781	26	2.3	27	80	11	72	48	0	1	50	1.10
67741--67786	18	2.5	18	83	13	58	52	0	0	47	1.00
67756--67799	19	2.3	19	84	7	54	54	2	0	43	1.12
67751--67807	27	2.2	25	84	9	71	50	1	0	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67738--67869	20	6.2	20	70	20	81	46	1	0	50	1.15
67744--67838	26	3.6	28	78	14	80	52	2	0	45	1.12
67788--67888	23	4.7	22	68	16	68	43	0	0	54	1.13
68368--68462	41	2.3	41	82	10	113	50	2	3	44	1.29
68501--68555	24	2.2	25	83	3	76	36	0	0	63	0.95
68500--68541	17	2.6	16	77	7	50	30	0	0	69	0.89
68501--68547	18	2.6	18	74	16	51	31	0	0	68	0.90
69124--69187	29	2.1	31	85	5	87	50	0	0	50	1.00
69846--69889	23	1.9	23	86	9	63	61	0	2	36	1.09
69848--69926	39	2.1	37	83	9	97	63	0	1	35	1.03
69897--69960	10	6.7	10	71	15	55	67	1	0	31	1.00
69947--69980	14	2.5	14	90	4	52	61	2	0	35	1.11
70586--70642	22	2.6	22	83	8	71	42	0	0	57	0.98
70580--70641	19	3.3	19	69	26	51	40	0	0	59	0.97
73924--73959	17	2.1	17	89	0	54	38	0	5	55	1.23
74937--74979	12	3.2	15	81	18	51	6	6	9	76	1.15
75505--75532	2	14.0	2	100	0	56	50	0	0	50	1.00
76849--76893	22	2.0	22	91	0	72	28	31	8	31	1.88
77522--77552	2	16.0	2	93	6	55	48	0	0	51	1.00
79077--79101	1	25.0	1	100	0	50	0	0	100	0	0.00
81666--81712	19	2.7	18	77	16	53	40	0	2	57	1.11
83399--83430	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88319--88387	1	69.0	1	100	0	138	0	100	0	0	0.00
90255--90327	24	3.0	24	73	13	60	52	0	9	38	1.34
91039--91088	2	25.0	2	100	0	100	50	0	0	50	1.00
98394--98451	28	2.1	28	96	0	107	27	5	6	60	1.44
101041--101083	19	2.3	19	84	8	52	51	2	2	44	1.27
103050--103166	51	2.3	51	83	1	135	41	5	21	31	1.77
103142--103363	78	2.8	79	73	14	213	34	9	29	27	1.88
105847--105886	4	10.5	4	89	5	57	0	25	0	75	0.81
105854--105880	14	1.9	14	100	0	54	0	25	0	74	0.83

Tables:   1

The End!