Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold983
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72880
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:2462 original size:28 final size:30
Alignment explanation
Indices: 2417--2491 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 30
2407 TTTACTTTTA
2417 TTAAAAATTATAATTTATCTA-TTTAT-TT
1 TTAAAAATTATAATTTATCTATTTTATATT
* *
2445 TTAAATATTA-AATATTATTTATTTTATATT
1 TTAAAAATTATAAT-TTATCTATTTTATATT
*
2475 TTAGTAAAATTTTAATT
1 TTA--AAAATTATAATT
2492 AAATATGACT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
27 3 0.08
28 15 0.41
29 5 0.14
30 5 0.14
32 6 0.16
33 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (30 bp):
TTAAAAATTATAATTTATCTATTTTATATT
Found at i:2535 original size:16 final size:15
Alignment explanation
Indices: 2510--2543 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
2500 CTTTATCAAA
2510 TAATTTATTTAAATT
1 TAATTTATTTAAATT
*
2525 TAATTTAATTTGAATT
1 TAATTT-ATTTAAATT
2541 TAA
1 TAA
2544 AATTAATAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (15 bp):
TAATTTATTTAAATT
Found at i:5222 original size:2 final size:2
Alignment explanation
Indices: 5217--5248 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
5207 AAAAGAAGAA
5217 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5249 TAAGAATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6611 original size:2 final size:2
Alignment explanation
Indices: 6604--6645 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
6594 TCTACAACAT
6604 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6646 AATTTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7680 original size:24 final size:24
Alignment explanation
Indices: 7644--7699 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
7634 TTTTATCAAC
* *
7644 CTAATATGTGTAGTTTCATTCTAT
1 CTAATATGCGTAGTTTCATTCCAT
7668 CTAATATGCGTAGTTTCATTCCAT
1 CTAATATGCGTAGTTTCATTCCAT
*
7692 CCAATATG
1 CTAATATG
7700 TTATACTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (24 bp):
CTAATATGCGTAGTTTCATTCCAT
Found at i:8026 original size:4 final size:4
Alignment explanation
Indices: 8017--8047 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
8007 AGGGTTAAAT
8017 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
8048 TTTGAGAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:8893 original size:30 final size:29
Alignment explanation
Indices: 8859--8925 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
8849 TAATTATTCA
* *
8859 TTATTTTTTTAGTTTTAATTTTTAAA-ATTT
1 TTATTTTTTAAATTTTAA-TTTTAAATA-TT
*
8889 TTATTATTTTAAATTTTTATTTTAAATATT
1 TTATT-TTTTAAATTTTAATTTTAAATATT
8919 TTATTTT
1 TTATTTT
8926 ACGATGACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 2 0.06
30 19 0.59
31 11 0.34
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.70
Consensus pattern (29 bp):
TTATTTTTTAAATTTTAATTTTAAATATT
Found at i:8900 original size:17 final size:16
Alignment explanation
Indices: 8826--8909 Score: 55
Period size: 16 Copynumber: 4.9 Consensus size: 16
8816 AAAAATTGAG
8826 TTTT-AATTTTTATTA
1 TTTTAAATTTTTATTA
8841 TTTTTAAATAATTATTCATTA
1 -TTTTAAAT--TT-TT-ATTA
* * *
8862 TTTTTTTAGTTTTAATT-
1 --TTTTAAATTTTTATTA
*
8879 TTTAAAATTTTTATTA
1 TTTTAAATTTTTATTA
8895 TTTTAAATTTTTATT
1 TTTTAAATTTTTATT
8910 TTAAATATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
15 11 0.21
16 18 0.34
17 3 0.06
18 3 0.06
19 3 0.06
20 4 0.08
21 4 0.08
22 7 0.13
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (16 bp):
TTTTAAATTTTTATTA
Found at i:8910 original size:13 final size:14
Alignment explanation
Indices: 8892--8926 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
8882 AAAATTTTTA
8892 TTATTTTAAAT-TT
1 TTATTTTAAATATT
8905 TTATTTTAAATATT
1 TTATTTTAAATATT
8919 TTATTTTA
1 TTATTTTA
8927 CGATGACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATTTTAAATATT
Found at i:9295 original size:15 final size:16
Alignment explanation
Indices: 9268--9297 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9258 AAATAAATTA
9268 TTAAAATAATATTAAT
1 TTAAAATAATATTAAT
9284 TTAAAA-AATATTAA
1 TTAAAATAATATTAA
9298 AAATATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAAATAATATTAAT
Found at i:9302 original size:24 final size:28
Alignment explanation
Indices: 9255--9314 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
9245 GATTTTGATT
9255 TTTAAATAAATTATTAAAATAATATTAA
1 TTTAAATAAATTATTAAAATAATATTAA
* *
9283 TTTAAA-AAA-TATTAAAAATATTATTAT
1 TTTAAATAAATTATT-AAAATAATATTAA
9310 TTTAA
1 TTTAA
9315 CACGTAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.14
27 19 0.66
28 6 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
TTTAAATAAATTATTAAAATAATATTAA
Found at i:9673 original size:27 final size:27
Alignment explanation
Indices: 9610--9673 Score: 62
Period size: 28 Copynumber: 2.3 Consensus size: 27
9600 TTTTAAAAAT
*
9610 ATTATTTTATTTATGATTAATGACAGTA
1 ATTATTTTATTTATGAGTAAT-ACAGTA
9638 ATT-TATTTATTATAT-AGTAAT-CATGTA
1 ATTAT-TTTATT-TATGAGTAATACA-GTA
9665 ATTATTTTA
1 ATTATTTTA
9674 AATATTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
26 2 0.06
27 11 0.35
28 15 0.48
29 3 0.10
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (27 bp):
ATTATTTTATTTATGAGTAATACAGTA
Found at i:9741 original size:37 final size:39
Alignment explanation
Indices: 9699--9775 Score: 113
Period size: 38 Copynumber: 2.0 Consensus size: 39
9689 TTGTTTAATT
* * *
9699 AAAATTTAATTTA-AGTTGTAATCATCTAATT-TTTTAA
1 AAAATTTAATTAAGAGTTATAATCATATAATTATTTTAA
9736 AAAATTTAATTAAGAGTTATAATCATATAATTATTTTAA
1 AAAATTTAATTAAGAGTTATAATCATATAATTATTTTAA
9775 A
1 A
9776 TTAAAAGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 12 0.34
38 16 0.46
39 7 0.20
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.45
Consensus pattern (39 bp):
AAAATTTAATTAAGAGTTATAATCATATAATTATTTTAA
Found at i:9778 original size:31 final size:32
Alignment explanation
Indices: 9743--9807 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
9733 TAAAAAATTT
*
9743 AATTAAGAG-TTATAATCATATAATTATTTTA
1 AATTAAAAGTTTATAATCATATAATTATTTTA
* *
9774 AATTAAAAGTTTTTAATCATCTAATTATTTTA
1 AATTAAAAGTTTATAATCATATAATTATTTTA
9806 AA
1 AA
9808 ATCTCAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 8 0.27
32 22 0.73
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.46
Consensus pattern (32 bp):
AATTAAAAGTTTATAATCATATAATTATTTTA
Found at i:9983 original size:13 final size:14
Alignment explanation
Indices: 9965--10010 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
9955 ATAATTATGA
9965 TTTAAATTAAA-AT
1 TTTAAATTAAACAT
9978 TTTAAATTAAACA-
1 TTTAAATTAAACAT
* *
9991 TATAAATTAAATAT
1 TTTAAATTAAACAT
10005 TTTAAA
1 TTTAAA
10011 ATAATTATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 22 0.79
14 6 0.21
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTAAATTAAACAT
Found at i:10146 original size:3 final size:3
Alignment explanation
Indices: 10138--10218 Score: 105
Period size: 3 Copynumber: 28.0 Consensus size: 3
10128 AAATACGAAC
* * * *
10138 ATA ATA ATA AT- CTT ATA ATA TTA TTA A-A AT- ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10183 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10219 GGCATCTAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
2 5 0.07
3 65 0.93
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:10430 original size:13 final size:13
Alignment explanation
Indices: 10412--10457 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 13
10402 AAAATAATAA
*
10412 TATTTTGATAATT
1 TATTTTAATAATT
10425 TATTTTAAATTAATAT
1 TATTTT-AA-TAAT-T
10441 TATTTTAATAATT
1 TATTTTAATAATT
10454 TATT
1 TATT
10458 CAAAAAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 11 0.38
14 5 0.17
15 6 0.21
16 7 0.24
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TATTTTAATAATT
Found at i:10468 original size:26 final size:28
Alignment explanation
Indices: 10403--10468 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 28
10393 TTACATATCA
* *
10403 AAATAATAA-TATTTTGATAATTTATTTT
1 AAATAA-AATTATTTTAATAATTTATTTC
*
10431 AAATTAATATTATTTTAATAATTTA-TTC
1 AAA-TAAAATTATTTTAATAATTTATTTC
10459 AAA-AAAATTA
1 AAATAAAATTA
10469 AAGAAACTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
26 6 0.19
28 9 0.28
29 17 0.53
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (28 bp):
AAATAAAATTATTTTAATAATTTATTTC
Found at i:11062 original size:16 final size:15
Alignment explanation
Indices: 11032--11073 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
11022 TCATTTAAAA
11032 TTAAAATAAAATTTT
1 TTAAAATAAAATTTT
*
11047 TTAAATATATAA-TTT
1 TTAAA-ATAAAATTTT
*
11062 TTAAAAAAAAAT
1 TTAAAATAAAAT
11074 AAATATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 4 0.18
15 13 0.59
16 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTAAAATAAAATTTT
Found at i:11548 original size:28 final size:28
Alignment explanation
Indices: 11490--11557 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
11480 GTCAACAAAT
*
11490 GTTACTTTTTATATTTGTCAAATATGATG
1 GTTA-TTTTTGTATTTGTCAAATATGATG
11519 GTT-TCTTTTGTATTTGTCAAATAT-AGTG
1 GTTAT-TTTTGTATTTGTCAAATATGA-TG
11547 GTTATTTTTGT
1 GTTATTTTTGT
11558 TTATAAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
27 2 0.06
28 29 0.83
29 4 0.11
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.56
Consensus pattern (28 bp):
GTTATTTTTGTATTTGTCAAATATGATG
Found at i:14152 original size:21 final size:22
Alignment explanation
Indices: 14123--14168 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
14113 TGTTCAGACA
** *
14123 AGTAGTACTCCGCAGCAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
14145 AGTA-TACTCCAAAACAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
14166 AGT
1 AGT
14169 TTCAAGAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
AGTAGTACTCCAAAACAGGTGG
Found at i:16106 original size:28 final size:28
Alignment explanation
Indices: 16073--16134 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
16063 AAATGCTACC
16073 TTTTGTATTTGTCAAATATGGTGGTT-T
1 TTTTGTATTTGTCAAATATGGTGGTTAT
16100 TCTTTGTATTTGTCAAATATGGTGGTTAT
1 T-TTTGTATTTGTCAAATATGGTGGTTAT
16129 TTTTGT
1 TTTTGT
16135 TTGTAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
27 1 0.03
28 30 0.91
29 2 0.06
ACGTcount: A:0.18, C:0.05, G:0.21, T:0.56
Consensus pattern (28 bp):
TTTTGTATTTGTCAAATATGGTGGTTAT
Found at i:16167 original size:24 final size:24
Alignment explanation
Indices: 16131--16176 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
16121 GTGGTTATTT
16131 TTGTTTGTAAAAATTGGTGGCTTG
1 TTGTTTGTAAAAATTGGTGGCTTG
*
16155 TTGTTTGTCAAAATTGGTGGCT
1 TTGTTTGTAAAAATTGGTGGCT
16177 AATTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.20, C:0.07, G:0.28, T:0.46
Consensus pattern (24 bp):
TTGTTTGTAAAAATTGGTGGCTTG
Found at i:17367 original size:23 final size:23
Alignment explanation
Indices: 17340--17402 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
17330 AGAGAAATAA
17340 TTAAAAATATTAAGAT-TTAAATT
1 TTAAAAATATTAA-ATATTAAATT
** * *
17363 TTAAATTTATTTAATATTATATT
1 TTAAAAATATTAAATATTAAATT
17386 TTAAAAATTAATTAAAT
1 TTAAAAA-T-ATTAAAT
17403 TAAACATTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
22 2 0.07
23 21 0.70
24 1 0.03
25 6 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TTAAAAATATTAAATATTAAATT
Found at i:17404 original size:23 final size:23
Alignment explanation
Indices: 17360--17404 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
17350 TAAGATTTAA
* *
17360 ATTTTAAATTTATTTAATATTAT
1 ATTTTAAAATTAATTAATATTAT
17383 ATTTTAAAAATTAATTAA-ATTA
1 ATTTT-AAAATTAATTAATATTA
17405 AACATTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTTTAAAATTAATTAATATTAT
Found at i:19646 original size:15 final size:16
Alignment explanation
Indices: 19626--19659 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
19616 TTAATTTATA
*
19626 TAATCA-TTTAATATT
1 TAATCAGTTTAAAATT
19641 TAATCAGTTTAAAATT
1 TAATCAGTTTAAAATT
19657 TAA
1 TAA
19660 ATTTTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (16 bp):
TAATCAGTTTAAAATT
Found at i:21053 original size:24 final size:25
Alignment explanation
Indices: 20996--21053 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
20986 ATAATATTTT
20996 TATTTAAAT-TTAATTATTAAAAAA
1 TATTTAAATATTAATTATTAAAAAA
*
21020 TATATAAATATTAA-TA-TAAAATAA
1 TATTTAAATATTAATTATTAAAA-AA
*
21044 TATTTTAATA
1 TATTTAAATA
21054 ATATAATGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 5 0.17
24 20 0.69
25 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
TATTTAAATATTAATTATTAAAAAA
Found at i:22267 original size:17 final size:18
Alignment explanation
Indices: 22223--22267 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 18
22213 TTTCATTCAA
*
22223 ATTTAAATAAAATTTATT
1 ATTTAAATATAATTTATT
22241 A-TT-AAT-TAATTT-TT
1 ATTTAAATATAATTTATT
22255 ATTTAAATATAAT
1 ATTTAAATATAAT
22268 AAAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
14 3 0.13
15 7 0.30
16 6 0.26
17 6 0.26
18 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAAATATAATTTATT
Found at i:22327 original size:2 final size:2
Alignment explanation
Indices: 22322--22353 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
22312 CTTTTAAAAA
22322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22354 GCCGATTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24384 original size:12 final size:13
Alignment explanation
Indices: 24366--24398 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
24356 AAAAAATAAA
24366 ATAATATAAATAT
1 ATAATATAAATAT
24379 -TAATATAAATAT
1 ATAATATAAATAT
24391 ATAATATA
1 ATAATATA
24399 TTAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATAATATAAATAT
Found at i:24406 original size:18 final size:17
Alignment explanation
Indices: 24363--24450 Score: 60
Period size: 18 Copynumber: 5.1 Consensus size: 17
24353 TTAAAAAAAT
24363 AAAATAATATAAATATTAA
1 AAAAT-ATATAAATATT-A
24382 TATAAATATATAATATATTA
1 -A-AAATATATAA-ATATTA
24402 AAAATATATAAA-A-T-
1 AAAATATATAAATATTA
*
24416 AAATTAT-TAATATATTA
1 AAAATATATAA-ATATTA
*
24433 AAATATTTATAAAT-TTA
1 AAA-ATATATAAATATTA
24450 A
1 A
24451 TATTTTATAT
Statistics
Matches: 57, Mismatches: 3, Indels: 19
0.72 0.04 0.24
Matches are distributed among these distances:
13 3 0.05
14 7 0.12
15 2 0.04
16 2 0.04
17 8 0.14
18 14 0.25
19 4 0.07
20 8 0.14
21 9 0.16
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAATATATAAATATTA
Found at i:24416 original size:20 final size:20
Alignment explanation
Indices: 24387--24438 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
24377 ATTAATATAA
*
24387 ATATATAATATATTAAAAAT
1 ATATAAAATATATTAAAAAT
* **
24407 ATATAAAATAAATTATTAAT
1 ATATAAAATATATTAAAAAT
24427 ATATTAAAATAT
1 ATA-TAAAATAT
24439 TTATAAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATATAAAATATATTAAAAAT
Found at i:24427 original size:31 final size:31
Alignment explanation
Indices: 24373--24445 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
24363 AAAATAATAT
*
24373 AAATAT-TAATATAAATATATAATATATTAA
1 AAATATATAAAATAAATATATAATATATTAA
24403 AAATATATAAAATAAAT-TATTAATATATTAA
1 AAATATATAAAATAAATATA-TAATATATTAA
*
24434 AATATTTATAAA
1 AA-ATATATAAA
24446 TTTAATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 8 0.21
31 22 0.58
32 8 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (31 bp):
AAATATATAAAATAAATATATAATATATTAA
Found at i:24454 original size:15 final size:15
Alignment explanation
Indices: 24433--24473 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
24423 TAATATATTA
24433 AAATATTTATAAATTT
1 AAATATTT-TAAATTT
*
24449 -AATATTTTATATTT
1 AAATATTTTAAATTT
24463 AAATATTTTAA
1 AAATATTTTAA
24474 TAAAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
AAATATTTTAAATTT
Found at i:26651 original size:18 final size:19
Alignment explanation
Indices: 26630--26689 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 19
26620 TACCTAATTT
26630 ATATTATATTAAAAT-TAA
1 ATATTATATTAAAATATAA
* *
26648 ATATAATATTATAATATAA
1 ATATTATATTAAAATATAA
*
26667 ATATTA-A-AAAAATATAA
1 ATATTATATTAAAATATAA
26684 A-ATTAT
1 ATATTAT
26690 TTATTTTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 4 0.11
17 9 0.26
18 14 0.40
19 8 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
ATATTATATTAAAATATAA
Found at i:27724 original size:176 final size:176
Alignment explanation
Indices: 27430--27780 Score: 479
Period size: 176 Copynumber: 2.0 Consensus size: 176
27420 ATGGATCAAG
* * * * *
27430 TTGTTGGAAAATCTTTCGTGATGAAAACATAACAAAATAAAAAAATTTGACTTGAGGGAACACCC
1 TTGTTGGAAAATCTTACATGATGAAAACATAACAAAATAAAAAAATTTGACGTCAGGGAACACCA
** ** * * * *
27495 TATGAGAACAAAAATATTTGATGAGATCGAAGATGAGTAGGACTGTGGCAAAACAAGTTGCAGAA
66 TACAAGAACAAAAATATTTGATGAGATAAAACATGAGTAAGAATGTGGCAAAACAACTTGCAGAA
* *
27560 AAATCTTAAGTGACAGAACACGTACTAAGAATAGAAAATTTTGATT
131 AAATCTTAAGTGACAGAACACGTACTAAGAAAAAAAAATTTTGATT
* * *
27606 TTGTTGGAAAATCTTACATGATGAAAACGTAACAAAATAGAAAAATTTGACGTCATGGAACA-CA
1 TTGTTGGAAAATCTTACATGATGAAAACATAACAAAATAAAAAAATTTGACGTCAGGGAACACCA
*
27670 TAACAAGAACAAAAATATTTGATGAGATAAAACATGAGTAAGAATGTGGCAAAACAACTTGTAGA
66 T-ACAAGAACAAAAATATTTGATGAGATAAAACATGAGTAAGAATGTGGCAAAACAACTTGCAGA
* ** *
27735 AAAATTTTAAGTGATGGAACACGTATTAAGAAAAAAAAATTTTGAT
130 AAAATCTTAAGTGACAGAACACGTACTAAGAAAAAAAAATTTTGAT
27781 GAGACGGAAA
Statistics
Matches: 151, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
175 2 0.01
176 149 0.99
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (176 bp):
TTGTTGGAAAATCTTACATGATGAAAACATAACAAAATAAAAAAATTTGACGTCAGGGAACACCA
TACAAGAACAAAAATATTTGATGAGATAAAACATGAGTAAGAATGTGGCAAAACAACTTGCAGAA
AAATCTTAAGTGACAGAACACGTACTAAGAAAAAAAAATTTTGATT
Found at i:28129 original size:28 final size:27
Alignment explanation
Indices: 28097--28156 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 27
28087 GTTATTTTTA
*
28097 TGATTTTACTTCCTATCATGATTGTGTG
1 TGATTTTACTTCCTATCATAATTGT-TG
*
28125 TGATTTTACTTCCTGTCATAATTGTTG
1 TGATTTTACTTCCTATCATAATTGTTG
28152 -GATTT
1 TGATTT
28157 ATAGTTGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 23 0.77
ACGTcount: A:0.18, C:0.13, G:0.17, T:0.52
Consensus pattern (27 bp):
TGATTTTACTTCCTATCATAATTGTTG
Found at i:32199 original size:108 final size:108
Alignment explanation
Indices: 32010--32228 Score: 368
Period size: 108 Copynumber: 2.0 Consensus size: 108
32000 CTGCACACTT
32010 TTTATCTTTGCTAGCAACATCCTCATATGCCTTTCAACCATTCCAACAACCATCTTCATCACTAG
1 TTTATCTTTGCTAGCAACATCCTCATATGCCTTTCAACCATTCCAACAACCATCTTCATCACTAG
* *
32075 GTCCTCTAGGGTCATTTATGTGCCATGATGGA-ATGTTATGTCG
66 GTCCTCTAGGGTCATTTATGAGCCATGAT-GATATGTTATATCG
* * *
32118 TTTATCTTTGCTAGCAACATCCTCGTATGCCTTTCAACCATTCCAACCACCATCTTCATCACTTG
1 TTTATCTTTGCTAGCAACATCCTCATATGCCTTTCAACCATTCCAACAACCATCTTCATCACTAG
*
32183 GTCCTCTAGGGTCATTTATGAGCTATGATGATATGTTATATCG
66 GTCCTCTAGGGTCATTTATGAGCCATGATGATATGTTATATCG
32226 TTT
1 TTT
32229 TGTTTTTAAA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 2 0.02
108 102 0.98
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (108 bp):
TTTATCTTTGCTAGCAACATCCTCATATGCCTTTCAACCATTCCAACAACCATCTTCATCACTAG
GTCCTCTAGGGTCATTTATGAGCCATGATGATATGTTATATCG
Found at i:36066 original size:13 final size:13
Alignment explanation
Indices: 36048--36073 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36038 CAATTTTTTG
36048 TGTATCGATACAT
1 TGTATCGATACAT
36061 TGTATCGATACAT
1 TGTATCGATACAT
36074 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:38482 original size:21 final size:21
Alignment explanation
Indices: 38458--38504 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
38448 TTTGATGCTG
38458 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
38478 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
38499 ATTTTG
1 ATTTTG
38505 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:40736 original size:15 final size:15
Alignment explanation
Indices: 40716--40746 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
40706 ATTTCGTTTG
*
40716 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
40731 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
40746 G
1 G
40747 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:44805 original size:13 final size:13
Alignment explanation
Indices: 44787--44812 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44777 CAATTTTTTG
44787 TGTATCGATACAT
1 TGTATCGATACAT
44800 TGTATCGATACAT
1 TGTATCGATACAT
44813 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:45284 original size:2 final size:2
Alignment explanation
Indices: 45277--45313 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
45267 ACTACTTTTC
*
45277 TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45314 TCATTTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:47403 original size:49 final size:49
Alignment explanation
Indices: 47286--48964 Score: 2249
Period size: 49 Copynumber: 34.7 Consensus size: 49
47276 AAAAGGATGT
*
47286 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
47338 CGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
47387 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
47436 CAATGTGCTGAGTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
47485 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
47534 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
47583 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
47632 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
47681 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
47724 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
47773 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
47822 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACATAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
47871 CAATATGCTGATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
47920 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
47969 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
48018 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
48067 CAATATGCTGATTCAGGGCCAGCTATATTGGACTT--A-AT---GGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
48110 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
48158 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
48207 CAATATGCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
48256 CAATGTGCTGAGTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
48305 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
48354 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
48403 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
48446 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
48495 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
48544 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
48593 CAATATGCTGATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
48642 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
48691 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
48740 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
48789 CAATATGTTGATTCAAGGCCAGCTATATTGGACTT--A-AT---GGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
48832 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
48880 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
48929 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
48965 GAAGGGTCGC
Statistics
Matches: 1422, Mismatches: 181, Indels: 51
0.86 0.11 0.03
Matches are distributed among these distances:
43 150 0.11
45 4 0.00
46 6 0.00
47 4 0.00
48 92 0.06
49 1129 0.79
51 1 0.00
52 36 0.03
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:48815 original size:722 final size:722
Alignment explanation
Indices: 47286--48964 Score: 3160
Period size: 722 Copynumber: 2.3 Consensus size: 722
47276 AAAAGGATGT
* * *
47286 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATT
47351 CAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATT
63 CAAGGCCAGCTATATTGGACTT-AA--T---GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATT
* * *
47416 GGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAACTACATTGGACTTAAAGATAAAG
122 GGACTTAAAGGTG-AGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAG
*
47481 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAG
186 GTGCCAATATGCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAG
47546 TCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
251 TCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
47611 TGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAA
316 TGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAA
47676 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
381 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
47741 GCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
446 GCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
47806 TTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACATAAAGATAAAGGTGC
511 TTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACATAAAGATAAAGGTGC
47871 CAATATGCTGATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAA
576 CAATATGCTGATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAA
47936 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
641 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
48001 CTTAATGGTGAAGGTGC
706 CTTAATGGTGAAGGTGC
*
48018 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAG
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
48083 GGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
66 GGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
48148 GGTGAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATAT
131 GGTGAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATAT
48213 GCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAG
196 GCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAG
*
48278 CTATATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAT
261 CTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAT
48343 GGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
326 GGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
48408 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACA
391 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACA
48473 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGA
456 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGA
*
48538 AGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
521 AGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACATAAAGATAAAGGTGCCAATATGCTG
48603 ATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
586 ATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
48668 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG
651 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG
48733 AAGGTGC
716 AAGGTGC
*
48740 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGTTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
48805 GGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
66 GGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
48870 GGTGAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATAT
131 GGTGAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATAT
*
48935 GCTGATTCAGGGCCAGCTATATTGGGCTTA
196 GCTGATTCAGGGCCAGCTATATTGGACTTA
48965 GAAGGGTCGC
Statistics
Matches: 934, Mismatches: 13, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
722 805 0.86
723 46 0.05
726 1 0.00
728 2 0.00
729 41 0.04
732 39 0.04
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (722 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
GGTGAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATAT
GCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAG
CTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAT
GGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACA
TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGA
AGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACATAAAGATAAAGGTGCCAATATGCTG
ATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG
AAGGTGC
Found at i:49079 original size:33 final size:34
Alignment explanation
Indices: 48973--49118 Score: 228
Period size: 33 Copynumber: 4.4 Consensus size: 34
48963 TAGAAGGGTC
* *
48973 GCCACCGACTTGTGTGGGCTTTAGAGAAATGGTT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
*
49007 GCCACCGACTTGTGTGGGCTTT-GAGAAG-GGTT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
49039 GCCACCGACTTGTGTGGGCTTTAGAG-AGTGATT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
*
49072 GCCACCGACTTGTGTGGGCTTTGGAG-AGTGATT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
49105 GCCACCGACTTGTG
1 GCCACCGACTTGTG
49119 GACTTAAAAG
Statistics
Matches: 107, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
32 28 0.26
33 57 0.53
34 22 0.21
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (34 bp):
GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
Found at i:49180 original size:33 final size:33
Alignment explanation
Indices: 49104--49545 Score: 276
Period size: 33 Copynumber: 13.6 Consensus size: 33
49094 GGAGAGTGAT
* * *
49104 TGCCACCGACTTGTGGAC-TTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA--GAAAAA-AG
* *
49139 TGCTACGGAATTGTGGGCTTTAAAAGAAAAAAG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
*
49172 TGCCACGGAGTTGTGGGCTTTGAAGAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTT-AA-A-AGAAAAA-AG
* * *
49209 TGCCACGGAGTTGTGGGC-CTAGAAGGAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTA-AAAGAAAAAAG
* * *
49242 TGCCACGTAGTTGTGGGCTTTAAAGGAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
*
49275 TGCCACGGAGTTGTGGGC-TTAAAAG-----GG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
*
49302 TGCCACGGAGTTGTGGGCTTTGAAAAG---AAGG
1 TGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAAG
* *
49333 TGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA--GAAAAA-AG
* * * *
49369 TGCCACAGAGTTGTGGGCTTTGAAAG--GAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
* * * * *
49400 TGCCACGGAGTCGTGGACTTT-GAAGGAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
* *
49432 TGCCACGAAGTTGTGGGCTTT-GAAGAAAAAA-
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
* * * * *
49463 TGCCACTGAGTCGTGGACTTT--GAGACAAAA-
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
* * * * *
49493 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
* * *
49525 TGCCACTGAGTCGTGGACTTT
1 TGCCACGGAGTTGTGGGCTTT
49546 GAGCAGAGAT
Statistics
Matches: 343, Mismatches: 43, Indels: 45
0.80 0.10 0.10
Matches are distributed among these distances:
27 19 0.06
28 2 0.01
29 5 0.01
30 35 0.10
31 57 0.17
32 65 0.19
33 68 0.20
34 17 0.05
35 19 0.06
36 36 0.10
37 20 0.06
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG
Found at i:49306 original size:27 final size:28
Alignment explanation
Indices: 49235--49360 Score: 128
Period size: 27 Copynumber: 4.2 Consensus size: 28
49225 GCCTAGAAGG
* *
49235 AAAAGAGTGCCACGTAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT
*
49263 AAAGGAAAAGAGTGCCACGGAGTTGTGGGC-TT
1 -----AAAAGGGTGCCACGGAGTTGTGGGCTTT
49295 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTT
* *
49323 GAAAAGAAGGTGCCACGGAGTCGTGGACTTT
1 -AAAAG--GGTGCCACGGAGTTGTGGGCTTT
49354 AAAAGGG
1 AAAAGGG
49361 AAAAAGAGTG
Statistics
Matches: 85, Mismatches: 4, Indels: 13
0.83 0.04 0.13
Matches are distributed among these distances:
27 24 0.28
28 4 0.05
29 5 0.06
30 5 0.06
31 21 0.25
32 2 0.02
33 24 0.28
ACGTcount: A:0.29, C:0.13, G:0.37, T:0.21
Consensus pattern (28 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTT
Found at i:49403 original size:67 final size:62
Alignment explanation
Indices: 49151--49545 Score: 283
Period size: 67 Copynumber: 6.1 Consensus size: 62
49141 CTACGGAATT
* * *
49151 GTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAGAGGGAAAAAGAGTGCCACG
1 GTGGACTTT-AAAGGAAAAGGTGCCAC-GAGTTGTGGGCTTTGAA-A-GG---AAG-GTGCCACG
*
49216 GAGTT
58 GAGTC
* *
49221 GTGGGC-CTAGAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTT-AAAGGAAAAGAGTGCCACGGA
1 GTGGACTTTA-AAGGAAAAG-GTGCCACG-AGTTGTGGGCTTTGAAAGG--AAG-GTGCCACGGA
*
49284 GTT
60 GTC
* * *
49287 GTGGGC-TT--A--AAAGGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTC
1 GTGGACTTTAAAGGAAAAGGTGCCAC-GAGTTGTGGGCTTTGAAAGGAAGGTGCCACGGAGTC
49345 GTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAGGAAGGTGCCACGGAG
1 GTGGACTTT-AAA-GG-AAAAG-GTGCCAC-GAGTTGTGGGCTTTGAAAGGAAGGTGCCACGGAG
49410 TC
61 TC
* * ** *
49412 GTGGACTTTGAAGGAAAAGGTGCCACGAAGTTGTGGGCTTTG-AAGAAAAAATGCCACTGAGTC
1 GTGGACTTTAAAGGAAAAGGTGCCACG-AGTTGTGGGCTTTGAAAG-GAAGGTGCCACGGAGTC
* * * * * *
49475 GTGGACTTT-GA-GACAAA-ATGCCACTGAGTCGTGGACTTT-AAAGGAAAAGATGCCACTGAGT
1 GTGGACTTTAAAGGA-AAAGGTGCCAC-GAGTTGTGGGCTTTGAAAGG--AAGGTGCCACGGAGT
49536 C
62 C
49537 GTGGACTTT
1 GTGGACTTT
49546 GAGCAGAGAT
Statistics
Matches: 282, Mismatches: 22, Indels: 50
0.80 0.06 0.14
Matches are distributed among these distances:
58 17 0.06
59 5 0.02
60 20 0.07
61 31 0.11
62 34 0.12
63 44 0.16
64 5 0.02
65 2 0.01
66 32 0.11
67 53 0.19
68 2 0.01
69 11 0.04
70 26 0.09
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.21
Consensus pattern (62 bp):
GTGGACTTTAAAGGAAAAGGTGCCACGAGTTGTGGGCTTTGAAAGGAAGGTGCCACGGAGTC
Found at i:49467 original size:31 final size:30
Alignment explanation
Indices: 49202--49607 Score: 229
Period size: 31 Copynumber: 12.9 Consensus size: 30
49192 TGAAGAGGGA
* * * *
49202 AAAAGAGTGCCACGGAGTTGTGGGCCTAGAAGG
1 AAAAGA-TGCCAC-GAGTCGTGGACTTTGAA-G
* * *
49235 AAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGG
1 AAAAGA-TGCCACG-AGTCGTGGACTTTGAA-G
* *
49268 AAAAGAGTGCCACGGAGTTGTGGGC-TT--A-
1 AAAAGA-TGCCAC-GAGTCGTGGACTTTGAAG
* * * *
49296 AAAGGGTGCCACGGAGTTGTGGGCTTTGAA-
1 AAAAGATGCCAC-GAGTCGTGGACTTTGAAG
* *
49326 AAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGG
1 AA-AAGATGCCAC-GAGTCGTGGACTTT-GAA--G
* *
49361 AAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA-
1 -AAAAGA-TGCCAC-GAGTCGTGGACTTTGAAG
* *
49393 AGGAAGGTGCCACGGAGTCGTGGACTTTGAAGG
1 A-AAAGATGCCAC-GAGTCGTGGACTTTGAA-G
* * *
49426 AAAAGGTGCCACGAAGTTGTGGGCTTTGAAG
1 AAAAGATGCCACG-AGTCGTGGACTTTGAAG
*
49457 AAAAAATGCCACTGAGTCGTGGACTTTG-AG
1 AAAAGATGCCAC-GAGTCGTGGACTTTGAAG
*
49487 ACAAA-ATGCCACTGAGTCGTGGACTTTAAAGG
1 A-AAAGATGCCAC-GAGTCGTGGACTTTGAA-G
49519 AAAAGATGCCACTGAGTCGTGGACTTTG-AG
1 AAAAGATGCCAC-GAGTCGTGGACTTTGAAG
* *
49549 CAGAGATTGCCACTGAGTCGTGGACTTTG-AG
1 AAAAGA-TGCCAC-GAGTCGTGGACTTTGAAG
*
49580 AAGAGATTGCCACTGAGTCGTGGACTTT
1 AAAAGA-TGCCAC-GAGTCGTGGACTTT
49608 AAAAAGGTAT
Statistics
Matches: 320, Mismatches: 31, Indels: 46
0.81 0.08 0.12
Matches are distributed among these distances:
27 18 0.06
28 6 0.02
30 34 0.11
31 127 0.40
32 57 0.18
33 52 0.16
34 1 0.00
35 5 0.02
36 20 0.06
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (30 bp):
AAAAGATGCCACGAGTCGTGGACTTTGAAG
Found at i:49508 original size:93 final size:93
Alignment explanation
Indices: 49203--49607 Score: 333
Period size: 93 Copynumber: 4.3 Consensus size: 93
49193 GAAGAGGGAA
* * * * * *
49203 AAAGAGTGCCACGGAGTTGTGGGCCTAGAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGG
1 AAAGAGTGCCACGGAGTCGTGGACTTTGAAGGAAAAG-GTGCCACG-AGTCGTGGACTTTAAAGG
* * * *
49268 AAAAGAGTGCCACGGAGTTGTGGGC-TT-A-
64 AAAA-AATGCCACTGAGTCGTGGACTTTGAG
* * *
49296 AAAGGGTGCCACGGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACGGAGTCGTGGACTTTAAAAG
1 AAAGAGTGCCACGGAGTCGTGGACTTTGAAGGAA-AAGGTGCCAC-GAGTCGTGGACTTT-AAA-
* * *
49359 GGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGA-
62 GGAAAAA-A-TGCCACTGAGTCGTGGACTTTGAG
* * * *
49392 AAGGAAGGTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACGAAGTTGTGGGCTTTGAA-
1 AAAG-A-GTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACG-AGTCGTGGACTTTAAAG
49456 GAAAAAATGCCACTGAGTCGTGGACTTTGAG
63 GAAAAAATGCCACTGAGTCGTGGACTTTGAG
* * * * * *
49487 ACAA-AATGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTT-GAGC
1 A-AAGAGTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCAC-GAGTCGTGGACTTTAAAGG
* * *
49550 AGAGATTGCCACTGAGTCGTGGACTTTGAG
64 AAAAAATGCCACTGAGTCGTGGACTTTGAG
* *
49580 AAGAGATTGCCACTGAGTCGTGGACTTT
1 AA-AGAGTGCCACGGAGTCGTGGACTTT
49608 AAAAAGGTAT
Statistics
Matches: 263, Mismatches: 30, Indels: 37
0.80 0.09 0.11
Matches are distributed among these distances:
91 20 0.08
92 10 0.04
93 108 0.41
94 61 0.23
95 4 0.02
96 11 0.04
98 26 0.10
99 21 0.08
100 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (93 bp):
AAAGAGTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACGAGTCGTGGACTTTAAAGGAA
AAAATGCCACTGAGTCGTGGACTTTGAG
Found at i:50629 original size:15 final size:13
Alignment explanation
Indices: 50609--50648 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
50599 CTTATCGAGA
50609 TTTTCTGTTTTGTTT
1 TTTTCT-TTTT-TTT
50624 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
*
50637 TTTCCTTTTTTT
1 TTTTCTTTTTTT
50649 GTGTTTGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 14 0.58
14 4 0.17
15 6 0.25
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (13 bp):
TTTTCTTTTTTTT
Found at i:55727 original size:11 final size:11
Alignment explanation
Indices: 55711--55738 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
55701 TCCCCTCGGA
55711 GGAGTGGGGTT
1 GGAGTGGGGTT
55722 GGAGTGGGGTT
1 GGAGTGGGGTT
55733 GGAGTG
1 GGAGTG
55739 TCCCCGGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.64, T:0.25
Consensus pattern (11 bp):
GGAGTGGGGTT
Found at i:59037 original size:175 final size:170
Alignment explanation
Indices: 58669--59049 Score: 421
Period size: 169 Copynumber: 2.2 Consensus size: 170
58659 CCACTGTGCA
* * * *
58669 GATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGCGATAAAAGGACCAATAC
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATAAAAGGACCAATAC
58734 GTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGCGG
66 GTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGCGG
* * * *
58799 CTAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCT
131 CCAGCGACATTGAACTTAAAGATAAAGGTGCCAATATGCT
* * * *
58839 GATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGA-GAAAAGTGATAAAGATG-CCAATA
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATAAA-AGGACCAATA
* * * * * **
58902 TGTTGATTCATGGCCAACGATATTGGGCTT-AAAGATGATGAAAAAGGATGTCAATGTGCTGAT-
65 CGTTGATTCACGGCCAACGATATTGGG-TTCAAAGATGA-GAAAAAGGA--TAAAAGAGCCAATA
* *
58965 T-CAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCT
126 TGC--GGCCAGCGACATTGAACTTAAAGAT---AAAGGTGCCAATATGCT
* * *
59014 GATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAG
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAG
59050 GTGCCAATGT
Statistics
Matches: 177, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
169 50 0.28
170 49 0.28
171 1 0.01
172 29 0.16
175 48 0.27
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (170 bp):
GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATAAAAGGACCAATAC
GTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGCGG
CCAGCGACATTGAACTTAAAGATAAAGGTGCCAATATGCT
Found at i:59070 original size:49 final size:49
Alignment explanation
Indices: 58953--60582 Score: 2160
Period size: 49 Copynumber: 33.7 Consensus size: 49
58943 AAAAGGATGT
*
58953 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
59005 CGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59054 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
59103 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59152 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
59201 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
59250 CAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
59299 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
59342 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
59391 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59440 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
59489 CAATATGCTGATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59538 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
59587 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59636 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59685 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A-AT---GGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59728 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
59776 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
59825 CAATATGCTGATTCAGGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59874 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
59923 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
59972 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
60021 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
60064 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
60113 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
60162 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
60211 CAATATGCTGATTCAAGGCCAGCTATATTAGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
60260 CAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
60309 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
60358 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
60407 CAATATGCTGATTCAATGCCAGCTATATTAGACTT--A-AT---GGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
60450 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
60498 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
60547 CAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
60583 GAAGGGTCGC
Statistics
Matches: 1371, Mismatches: 183, Indels: 51
0.85 0.11 0.03
Matches are distributed among these distances:
43 149 0.11
45 4 0.00
46 6 0.00
47 4 0.00
48 92 0.07
49 1079 0.79
51 1 0.00
52 36 0.03
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:60433 original size:722 final size:722
Alignment explanation
Indices: 59000--60582 Score: 3049
Period size: 722 Copynumber: 2.2 Consensus size: 722
58990 AGATGGAAAA
* * * *
59000 GGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGA
1 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGCCAATGTGCTGA
* *
59065 GTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA
65 GTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATA
59130 TTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAA
130 TTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAA
59195 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTG
195 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTG
59260 AGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
260 AGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
59325 ATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTG
325 ATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTG
59390 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCA
390 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCA
59455 AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAG
455 AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAG
*
59520 ACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
520 ACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGT
59585 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTC
585 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTC
*
59650 AAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
650 AAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTA
59715 GACTTAAT
715 GACTTAAT
59723 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATGTGCTGAG
1 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATGTGCTGAG
59788 TCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATAT
66 TCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATAT
59853 TGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAA
131 TGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAA
59918 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGA
196 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGA
*
59983 GTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
261 GTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
60048 TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
326 TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
60113 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAA
391 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAA
60178 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGA
456 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGA
60243 CTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTG
521 CTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTG
60308 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCA
586 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCA
* *
60373 AGGCCAGCTACATTGGACTTAAAGATAAATGTGCCAATATGCTGATTCAATGCCAGCTATATTAG
651 AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAG
60438 ACTTAAT
716 ACTTAAT
60445 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATGTGCTGAG
1 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATGTGCTGAG
60510 TCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATAT
66 TCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATAT
*
60575 TGGGCTTA
131 TGGACTTA
60583 GAAGGGTCGC
Statistics
Matches: 848, Mismatches: 12, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
722 805 0.95
723 43 0.05
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (722 bp):
GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATGTGCTGAG
TCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATAT
TGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAA
GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGA
GTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAA
GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGA
CTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTG
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCA
AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAG
ACTTAAT
Found at i:60697 original size:33 final size:34
Alignment explanation
Indices: 60591--60736 Score: 228
Period size: 33 Copynumber: 4.4 Consensus size: 34
60581 TAGAAGGGTC
* *
60591 GCCACCGACTTGTGTGGGCTTTAGAGAAATGGTT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
*
60625 GCCACCGACTTGTGTGGGCTTT-GAGAAG-GGTT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
60657 GCCACCGACTTGTGTGGGCTTTAGAG-AGTGATT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
*
60690 GCCACCGACTTGTGTGGGCTTTGGAG-AGTGATT
1 GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
60723 GCCACCGACTTGTG
1 GCCACCGACTTGTG
60737 GACTTAAAAG
Statistics
Matches: 107, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
32 28 0.26
33 57 0.53
34 22 0.21
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (34 bp):
GCCACCGACTTGTGTGGGCTTTAGAGAAGTGATT
Found at i:60797 original size:33 final size:33
Alignment explanation
Indices: 60722--61101 Score: 308
Period size: 33 Copynumber: 11.6 Consensus size: 33
60712 GGAGAGTGAT
* * *
60722 TGCCACCGACTTGTGGAC-TTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA--GAAAAAG-G
*
60757 TGCCACGGAATTGTGGGCTTTAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGG
*
60790 TGCCACGGAGTTGTGGGCTTTGAAGAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTT-AA-A-AGAAAAAG-G
* *
60827 TGCCACGGAGTTGTGGGC-TTAGAAGGAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAG-G
* *
60860 TGCCACGTAGTTGTGGGCTTTAAAGGAAAATA-G
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAA-AGG
60893 TGCCACGGAGTTGTGGGC-TTAAAAG-----GG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGG
60920 TGCCACGGAGTTGTGGGCTTTGAAAAG---AAGG
1 TGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAGG
* *
60951 TGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA--GAAAAAG-G
* * *
60987 TGCCACAGAGTTGTGGGCTTTGAAAG--GAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGG
* * * *
61018 TGCCACGGAGTCGTGGACTTT-GAAGGAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGG
* * *
61050 TGCCACGAAGTTGTGGGCTTT-GAAGAAAAA-A
1 TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGG
* * *
61081 TGCCACTGAGTCGTGGACTTT
1 TGCCACGGAGTTGTGGGCTTT
61102 GAGACAAAAT
Statistics
Matches: 290, Mismatches: 35, Indels: 44
0.79 0.09 0.12
Matches are distributed among these distances:
27 19 0.07
28 2 0.01
29 5 0.02
30 7 0.02
31 57 0.20
32 40 0.14
33 64 0.22
34 19 0.07
35 21 0.07
36 37 0.13
37 19 0.07
ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGG
Found at i:60877 original size:103 final size:97
Alignment explanation
Indices: 60722--61163 Score: 374
Period size: 93 Copynumber: 4.5 Consensus size: 97
60712 GGAGAGTGAT
* * * *
60722 TGCCACCGACTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAATTGTGGGCTTTAAAAGAAAA
1 TGCCACGGAGTTGTGGACTTAGAA-GG-AAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
60787 AGGTGCCACGGAGTTGTGGGCTTTGAAGAGGGAAAAAGAG
63 A-GTGCCACGGAGTTGTGGGCTTTGAA-A-GG-AAAAG-G
* * *
60827 TGCCACGGAGTTGTGGGCTTAGAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGGAAAATA
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGAAAA-A
*
60892 GTGCCACGGAGTTGTGGGC-TT---A--AAAGGG
64 GTGCCACGGAGTTGTGGGCTTTGAAAGGAAAAGG
* * * *
60920 TGCCACGGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAA
1 TGCCACGGAGTTGTGGACTTAGAAGGAA-AAGGTGCCACGGAGTTGTGGGCTTTAAAA--G-AAA
*
60983 AGAGTGCCACAGAGTTGTGGGCTTTGAAAGG--AAGG
62 A-AGTGCCACGGAGTTGTGGGCTTTGAAAGGAAAAGG
* * * * *
61018 TGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACGAAGTTGTGGGCTTT-GAAGAAAAAAT
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGT
* * * * *
61082 GCCACTGAGTCGTGGACTTTGAGA-CAAAA--
66 GCCACGGAGTTGTGGGCTTTGAAAGGAAAAGG
* * * * * *
61111 TGCCACTGAGTCGTGGACTTTA-AAGGAAAAGATGCCACTGAGTCGTGGACTTT
1 TGCCACGGAGTTGTGGAC-TTAGAAGGAAAAGGTGCCACGGAGTTGTGGGCTTT
61164 GAGCAGAGAT
Statistics
Matches: 286, Mismatches: 35, Indels: 44
0.78 0.10 0.12
Matches are distributed among these distances:
91 24 0.08
92 3 0.01
93 68 0.24
94 51 0.18
95 8 0.03
96 1 0.00
98 29 0.10
99 22 0.08
100 2 0.01
102 2 0.01
103 53 0.19
104 3 0.01
105 20 0.07
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.21
Consensus pattern (97 bp):
TGCCACGGAGTTGTGGACTTAGAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGT
GCCACGGAGTTGTGGGCTTTGAAAGGAAAAGG
Found at i:61021 original size:67 final size:62
Alignment explanation
Indices: 60756--61163 Score: 300
Period size: 67 Copynumber: 6.4 Consensus size: 62
60746 GGGAAAAAGA
* * * *
60756 GTGCCACGGAATTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAGGGAA
1 GTGCCACGGAGTCGTGGACTTT-AAAGGAAAAGGTGCCAC-GAGTTGTGGGCTTTGAA-A-GG--
60821 AAAG
60 -AAG
* *
60825 AGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTT-AAAGGAA
1 -GTGCCACGGAGTCGTGGACTTTA-AAGGAAAAG-GTGCCACG-AGTTGTGGGCTTTGAAAGG--
*
60888 AATA
60 AA-G
* * * *
60892 GTGCCACGGAGTTGTGGGC-TT--A--AAAGGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAG
1 GTGCCACGGAGTCGTGGACTTTAAAGGAAAAGGTGCCAC-GAGTTGTGGGCTTTGAAAGGAAG
60950 GTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAGGA
1 GTGCCACGGAGTCGTGGACTTT-AAA-GG-AAAAG-GTGCCAC-GAGTTGTGGGCTTTGAAAGGA
61015 AG
61 AG
* * *
61017 GTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACGAAGTTGTGGGCTTTG-AAGAAAAA
1 GTGCCACGGAGTCGTGGACTTTAAAGGAAAAGGTGCCACG-AGTTGTGGGCTTTGAAAG-GAAG
* * * * * *
61080 ATGCCACTGAGTCGTGGACTTT-GA-GACAAA-ATGCCACTGAGTCGTGGACTTT-AAAGGAAAA
1 GTGCCACGGAGTCGTGGACTTTAAAGGA-AAAGGTGCCAC-GAGTTGTGGGCTTTGAAAGG--AA
61141 G
62 G
* *
61142 ATGCCACTGAGTCGTGGACTTT
1 GTGCCACGGAGTCGTGGACTTT
61164 GAGCAGAGAT
Statistics
Matches: 294, Mismatches: 22, Indels: 52
0.80 0.06 0.14
Matches are distributed among these distances:
58 17 0.06
59 4 0.01
60 20 0.07
61 31 0.11
62 34 0.12
63 44 0.15
64 5 0.02
65 2 0.01
66 31 0.11
67 53 0.18
68 2 0.01
69 13 0.04
70 38 0.13
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (62 bp):
GTGCCACGGAGTCGTGGACTTTAAAGGAAAAGGTGCCACGAGTTGTGGGCTTTGAAAGGAAG
Found at i:61085 original size:31 final size:30
Alignment explanation
Indices: 60820--61225 Score: 229
Period size: 31 Copynumber: 12.9 Consensus size: 30
60810 TGAAGAGGGA
* * *
60820 AAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGG
1 AAAAGA-TGCCAC-GAGTCGTGGACTTTGAA-G
* * *
60853 AAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGG
1 AAAAGA-TGCCACG-AGTCGTGGACTTTGAA-G
* * *
60886 AAAATAGTGCCACGGAGTTGTGGGC-TT--A-
1 AAAAGA-TGCCAC-GAGTCGTGGACTTTGAAG
* * * *
60914 AAAGGGTGCCACGGAGTTGTGGGCTTTGAA-
1 AAAAGATGCCAC-GAGTCGTGGACTTTGAAG
* *
60944 AAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGG
1 AA-AAGATGCCAC-GAGTCGTGGACTTT-GAA--G
* *
60979 AAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA-
1 -AAAAGA-TGCCAC-GAGTCGTGGACTTTGAAG
* *
61011 AGGAAGGTGCCACGGAGTCGTGGACTTTGAAGG
1 A-AAAGATGCCAC-GAGTCGTGGACTTTGAA-G
* * *
61044 AAAAGGTGCCACGAAGTTGTGGGCTTTGAAG
1 AAAAGATGCCACG-AGTCGTGGACTTTGAAG
*
61075 AAAAAATGCCACTGAGTCGTGGACTTTG-AG
1 AAAAGATGCCAC-GAGTCGTGGACTTTGAAG
*
61105 ACAAA-ATGCCACTGAGTCGTGGACTTTAAAGG
1 A-AAAGATGCCAC-GAGTCGTGGACTTTGAA-G
61137 AAAAGATGCCACTGAGTCGTGGACTTTG-AG
1 AAAAGATGCCAC-GAGTCGTGGACTTTGAAG
* *
61167 CAGAGATTGCCACTGAGTCGTGGACTTTG-AG
1 AAAAGA-TGCCAC-GAGTCGTGGACTTTGAAG
*
61198 AAGAGATTGCCACTGAGTCGTGGACTTT
1 AAAAGA-TGCCAC-GAGTCGTGGACTTT
61226 AAAAAGGTAT
Statistics
Matches: 319, Mismatches: 32, Indels: 46
0.80 0.08 0.12
Matches are distributed among these distances:
27 18 0.06
28 5 0.02
30 34 0.11
31 127 0.40
32 57 0.18
33 52 0.16
34 1 0.00
35 5 0.02
36 20 0.06
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.22
Consensus pattern (30 bp):
AAAAGATGCCACGAGTCGTGGACTTTGAAG
Found at i:61126 original size:93 final size:93
Alignment explanation
Indices: 60821--61225 Score: 342
Period size: 93 Copynumber: 4.3 Consensus size: 93
60811 GAAGAGGGAA
* * * * *
60821 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGG
1 AAAGAGTGCCACGGAGTCGTGGACTTTGAAGGAAAAG-GTGCCACG-AGTCGTGGACTTTAAAGG
* * * *
60886 AAAATAGTGCCACGGAGTTGTGGGC-TT-A-
64 AAAA-AATGCCACTGAGTCGTGGACTTTGAG
* * *
60914 AAAGGGTGCCACGGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACGGAGTCGTGGACTTTAAAAG
1 AAAGAGTGCCACGGAGTCGTGGACTTTGAAGGAA-AAGGTGCCAC-GAGTCGTGGACTTT-AAA-
* * *
60977 GGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGA-
62 GGAAAAA-A-TGCCACTGAGTCGTGGACTTTGAG
* * * *
61010 AAGGAAGGTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACGAAGTTGTGGGCTTTGAA-
1 AAAG-A-GTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACG-AGTCGTGGACTTTAAAG
61074 GAAAAAATGCCACTGAGTCGTGGACTTTGAG
63 GAAAAAATGCCACTGAGTCGTGGACTTTGAG
* * * * * *
61105 ACAA-AATGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTT-GAGC
1 A-AAGAGTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCAC-GAGTCGTGGACTTTAAAGG
* * *
61168 AGAGATTGCCACTGAGTCGTGGACTTTGAG
64 AAAAAATGCCACTGAGTCGTGGACTTTGAG
* *
61198 AAGAGATTGCCACTGAGTCGTGGACTTT
1 AA-AGAGTGCCACGGAGTCGTGGACTTT
61226 AAAAAGGTAT
Statistics
Matches: 264, Mismatches: 29, Indels: 37
0.80 0.09 0.11
Matches are distributed among these distances:
91 20 0.08
92 10 0.04
93 109 0.41
94 61 0.23
95 4 0.02
96 11 0.04
98 26 0.10
99 21 0.08
100 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (93 bp):
AAAGAGTGCCACGGAGTCGTGGACTTTGAAGGAAAAGGTGCCACGAGTCGTGGACTTTAAAGGAA
AAAATGCCACTGAGTCGTGGACTTTGAG
Found at i:62246 original size:15 final size:13
Alignment explanation
Indices: 62226--62265 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
62216 CTTATCGAGA
62226 TTTTCTGTTTTGTTT
1 TTTTCT-TTTT-TTT
62241 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
*
62254 TTTCCTTTTTTT
1 TTTTCTTTTTTT
62266 GTGTTTGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 14 0.58
14 4 0.17
15 6 0.25
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (13 bp):
TTTTCTTTTTTTT
Found at i:67344 original size:11 final size:11
Alignment explanation
Indices: 67328--67355 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
67318 TCCCCTCGGA
67328 GGAGTGGGGTT
1 GGAGTGGGGTT
67339 GGAGTGGGGTT
1 GGAGTGGGGTT
67350 GGAGTG
1 GGAGTG
67356 TCCCCGGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.64, T:0.25
Consensus pattern (11 bp):
GGAGTGGGGTT
Found at i:69668 original size:13 final size:13
Alignment explanation
Indices: 69650--69674 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69640 CAAAAAAAAA
69650 TGTATCGATACAT
1 TGTATCGATACAT
69663 TGTATCGATACA
1 TGTATCGATACA
69675 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:70341 original size:28 final size:28
Alignment explanation
Indices: 70309--70444 Score: 113
Period size: 28 Copynumber: 5.0 Consensus size: 28
70299 ACATCCTCAC
70309 CCTTCAAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
* * *
70337 CCTTCAAAAGCCCACAGGTCCGTGGCAT
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
* * *
70365 CTTTTTC-AAAGCCC-CGAGTCAGCGGCAA
1 C--CTTCAAAAGCCCACAAGTCAGTGGCAA
* *
70393 -CTTCAAACAG-CCAC-AGTCA-AGGCAC
1 CCTTCAAA-AGCCCACAAGTCAGTGGCAA
* *
70418 CCTTTAAAAGCCCACAAGTCCGTGGCA
1 CCTTCAAAAGCCCACAAGTCAGTGGCA
70445 TCTTTTTCCT
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
25 9 0.11
26 19 0.23
27 7 0.08
28 39 0.46
29 7 0.08
30 3 0.04
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.17
Consensus pattern (28 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCAA
Found at i:70482 original size:26 final size:27
Alignment explanation
Indices: 70452--70510 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
70442 GCATCTTTTT
70452 CCTTTTAAGTCTAC-ACTCCGTGACAC
1 CCTTTTAAGTCTACAACTCCGTGACAC
*
70478 CCTTTTACGTCTACAACTCCGTGACAC
1 CCTTTTAAGTCTACAACTCCGTGACAC
*
70505 CATTTT
1 CCTTTT
70511 TCTTTTCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 13 0.43
27 17 0.57
ACGTcount: A:0.22, C:0.34, G:0.10, T:0.34
Consensus pattern (27 bp):
CCTTTTAAGTCTACAACTCCGTGACAC
Found at i:70601 original size:34 final size:32
Alignment explanation
Indices: 70488--70611 Score: 110
Period size: 34 Copynumber: 3.7 Consensus size: 32
70478 CCTTTTACGT
*
70488 CTACAACTCCGTGACAC-CATTTTTCTTTTCAAAGC
1 CTACAACTCCGTGGCACTC-TTTTTC-TTT--AAGC
*
70523 CTACAAACT-CGTGACCACTCTTTTT-TTTAAGC
1 CTAC-AACTCCGTG-GCACTCTTTTTCTTTAAGC
**
70555 CCGCAACTCCGTGGCACTCTTTTTCCTTTAAGTC
1 CTACAACTCCGTGGCACTCTTTTT-CTTTAAG-C
*
70589 CTACAACTCCGTGGCACCCTTTT
1 CTACAACTCCGTGGCACTCTTTT
70612 AAAGTCCACA
Statistics
Matches: 75, Mismatches: 7, Indels: 15
0.77 0.07 0.15
Matches are distributed among these distances:
31 14 0.19
32 10 0.13
33 6 0.08
34 24 0.32
35 8 0.11
36 12 0.16
37 1 0.01
ACGTcount: A:0.21, C:0.33, G:0.11, T:0.35
Consensus pattern (32 bp):
CTACAACTCCGTGGCACTCTTTTTCTTTAAGC
Found at i:71020 original size:86 final size:86
Alignment explanation
Indices: 70831--71050 Score: 311
Period size: 86 Copynumber: 2.5 Consensus size: 86
70821 TTCTTTAAGT
* *
70831 CCAA-ATCGCTAGCCTTGAATCAGCATATTGGCACCTTTAACTTTAAGACCAATGTCACTGGACT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTT--CTTTAAGACCAATGTCACTGGACT
*
70895 TGAATTAGTACATTGGCACAAGC
64 TGAATCAGTACATTGGCACAAGC
*
70918 CCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTGTCTTTAAGACCAATGTCACT-GCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGACACCTT-TCTTTAAGACCAATGTCACTGGAC-T
*
70982 TGAATCAGTGCA-TGGCACAAGC
64 TGAATCAGTACATTGGCACAAGC
* *
71004 CCAATATCGTTGGCCTTGAATCAACATATTGACACCTTATCTTTAAG
1 CCAATATCGCTGGCCTTGAATCAGCATATTGACACCTT-TCTTTAAG
71051 TCCGATACGT
Statistics
Matches: 122, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
86 56 0.46
87 34 0.28
88 31 0.25
89 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (86 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTCTTTAAGACCAATGTCACTGGACTTG
AATCAGTACATTGGCACAAGC
Found at i:71254 original size:96 final size:97
Alignment explanation
Indices: 71007--71370 Score: 309
Period size: 100 Copynumber: 3.8 Consensus size: 97
70997 CACAAGCCCA
* * * * * * **
71007 ATATCGTTGGCCTTGAATCAACATATTGACACCTT-ATCTTTAAGTCCGAT-ACGTTGGCCTTGA
1 ATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGA
* * * *
71070 ATCAGCATATT-GAACCTTTATC-TTATGACC
66 ATCAGCACATTGGCACCTTCATCTTTAAGACC
* * * *
71100 AATGTCGCT-GCC-TGAATCA-CACATTGGCGCCTTCATCTTTAAGACCAATGTCATTGGCCTTG
1 -ATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTG
*
71162 AATC-GC-CATTGGTACCTTCAT-TTT-AGACC
65 AATCAGCACATTGGCACCTTCATCTTTAAGACC
* * **
71191 GTGTCGTTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGACCAATGTTGCTGGCCT
1 ATATCGTTGGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGACCAATGTCACTGGCCT
*
71256 TGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TGAATCAGCACATTGGCACCTTCATCTTTAAGACC
* * * * * *
71291 ATATCGTTGGCCTTGAATCAGCATATTGTCATCTTTAACATTCCTAAGCCCAATTGTCACTGGCC
1 ATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCATC-TT--TAAGACCAA-TGTCACTGGCC
**
71356 TTGTCTCAGCACATT
62 TTGAATCAGCACATT
71371 AGCTTCTCTT
Statistics
Matches: 219, Mismatches: 33, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
90 6 0.03
91 21 0.10
92 39 0.18
93 30 0.14
94 6 0.03
96 30 0.14
97 4 0.02
98 16 0.07
99 3 0.01
100 42 0.19
101 22 0.10
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (97 bp):
ATATCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGA
ATCAGCACATTGGCACCTTCATCTTTAAGACC
Found at i:71263 original size:52 final size:49
Alignment explanation
Indices: 71004--71318 Score: 323
Period size: 46 Copynumber: 6.6 Consensus size: 49
70994 TGGCACAAGC
* * * * *
71004 CCAATATCGTTGGCCTTGAATCAACATATTGACACCTT-ATCTTTAAGT
1 CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* * * * * *
71052 CCGAT-ACGTTGGCCTTGAATCAGCATATT-GAACCTTTATC-TTATGA
1 CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* *
71098 CCAATGTCGCT-GCC-TGAATCA-CACATTGGCGCCTTCATCTTTAAGA
1 CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* *
71144 CCAATGTCATTGGCCTTGAATC-GC-CATTGGTACCTTCAT-TTT-AGA
1 CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
*
71189 CC-GTGTCGTTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGA
1 CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGA
* * *
71240 CCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
1 CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* *
71289 CC-ATATCGTTGGCCTTGAATCAGCATATTG
1 CCAATGTCGTTGGCCTTGAATCAGCACATTG
71319 TCATCTTTAA
Statistics
Matches: 222, Mismatches: 30, Indels: 30
0.79 0.11 0.11
Matches are distributed among these distances:
44 22 0.10
45 22 0.10
46 44 0.20
47 44 0.20
48 35 0.16
49 15 0.07
50 3 0.01
51 5 0.02
52 32 0.14
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (49 bp):
CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
Found at i:72197 original size:18 final size:19
Alignment explanation
Indices: 72174--72223 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
72164 TCAACTAATT
72174 TGTATCGATACAAAAG-CA
1 TGTATCGATACAAAAGTCA
* * **
72192 TGTATCGCTACATAAGTGT
1 TGTATCGATACAAAAGTCA
72211 TGTATCGATACAA
1 TGTATCGATACAA
72224 TGTATTGCTA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
TGTATCGATACAAAAGTCA
Found at i:72288 original size:13 final size:13
Alignment explanation
Indices: 72270--72297 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72260 CCATTTTCAA
72270 TGTATCGATACAT
1 TGTATCGATACAT
72283 TGTATCGATACAT
1 TGTATCGATACAT
72296 TG
1 TG
72298 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Done.