Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold988
Parameters: 2 7 7 80 10 50 1000
Length:  84189

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4551--4591
2
20.5
2
100
0
82
0
48
0
51
1.00
6384--6423
19
2.2
18
86
4
53
40
0
2
57
1.12
6945--6975
13
2.3
14
94
5
55
32
0
0
67
0.91
7561--7588
11
2.5
11
100
0
56
35
0
0
64
0.94
8394--8451
22
2.5
24
76
23
70
55
0
0
44
0.99
8604--8646
21
2.0
21
91
8
70
58
0
0
41
0.98
8566--8632
35
1.9
35
82
11
84
50
0
0
49
1.00
9646--9726
39
2.1
39
85
0
108
19
16
6
58
1.59
15176--15258
42
2.0
43
95
2
150
33
15
8
42
1.77
18479--18504
2
13.0
2
100
0
52
50
0
0
50
1.00
18637--18730
41
2.3
39
82
15
104
26
4
1
68
1.15
18760--18821
18
3.3
18
82
8
70
54
0
0
45
0.99
18761--18841
41
1.9
42
85
12
112
56
0
0
43
0.99
18792--18828
18
2.0
18
89
5
56
59
0
0
40
0.97
19168--19205
3
12.7
3
100
0
76
34
0
0
65
0.93
21057--21111
27
2.0
29
85
7
78
47
12
10
29
1.76
22157--22253
46
2.1
46
94
1
169
39
22
7
30
1.81
22520--22558
19
2.1
19
85
9
53
33
7
7
51
1.59
22853--22907
20
2.7
20
73
23
51
54
0
3
41
1.18
23132--23180
21
2.4
19
80
10
53
51
0
0
48
1.00
23972--24016
2
22.5
2
100
0
90
51
0
0
48
1.00
30570--30604
9
3.8
9
88
3
52
0
17
0
82
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32884--32928
19
2.4
18
85
3
54
48
0
2
48
1.13
35338--35377
15
2.7
15
84
7
55
65
0
0
35
0.93
35472--35507
18
2.0
18
88
0
54
63
2
0
33
1.08
37765--37793
2
14.5
2
100
0
58
48
0
0
51
1.00
40412--40450
13
2.7
15
84
15
55
56
7
0
35
1.28
40674--40785
49
2.3
50
79
16
126
43
2
0
53
1.14
41514--41564
11
4.5
11
80
4
66
54
0
1
43
1.11
41506--41556
23
2.3
23
86
10
70
58
1
3
35
1.28
41516--41564
23
2.2
23
92
3
82
53
0
2
44
1.12
41695--41732
19
2.0
19
94
0
67
28
10
18
42
1.83
41733--41765
2
16.5
2
100
0
66
48
0
0
51
1.00
42005--42046
16
2.5
17
84
7
59
30
0
0
69
0.89
42564--42620
29
1.9
30
86
10
82
43
0
1
54
1.10
43211--43443
118
2.0
119
82
0
288
35
13
4
46
1.64
43709--43744
13
2.7
13
95
4
63
38
0
0
61
0.96
43709--43752
13
3.4
13
87
9
54
40
0
0
59
0.98
47686--47759
17
4.4
17
68
10
53
52
1
1
44
1.17
47830--47894
27
2.4
27
84
7
78
44
0
4
50
1.22
48101--48156
16
3.6
15
85
7
76
48
0
5
46
1.25
50339--50406
21
3.3
21
83
2
84
33
1
0
64
1.02
51967--52033
11
6.0
11
71
22
59
41
0
0
58
0.98
51970--52028
14
4.0
14
75
12
64
40
0
0
59
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51971--52033
31
2.0
31
87
6
83
42
0
0
57
0.99
51988--52026
20
2.0
19
95
5
69
38
0
0
61
0.96
52146--52181
9
3.9
9
89
7
54
55
2
0
41
1.14
52157--52212
28
2.0
28
82
0
67
41
5
0
53
1.24
53286--53343
14
3.9
15
74
17
59
56
0
0
43
0.99
54037--54096
25
2.5
25
79
15
65
61
0
0
38
0.96
54054--54132
29
2.7
29
80
9
90
55
0
0
44
0.99
54065--54152
29
3.1
28
80
6
88
57
0
0
42
0.98
54027--54152
9
14.2
9
71
19
52
61
0
0
38
0.96
56709--56752
22
2.0
22
81
0
52
54
2
0
43
1.12
57077--57118
20
2.2
20
80
16
52
45
0
0
54
0.99
57083--57138
17
3.4
17
73
11
62
41
0
0
58
0.98
57086--57130
19
2.3
20
88
11
67
40
0
0
60
0.97
57080--57146
33
2.0
34
88
2
100
43
0
0
56
0.99
57703--57727
13
1.9
13
100
0
50
40
4
0
56
1.18
57717--57758
17
2.3
17
88
12
57
57
0
0
42
0.99
57978--58097
16
7.7
16
70
5
84
34
1
6
57
1.35
57976--58033
29
2.0
29
89
0
89
37
0
1
60
1.07
69014--69054
3
13.7
3
85
10
57
0
60
2
36
1.10
69904--69964
23
2.7
23
80
12
72
65
1
1
31
1.12
69904--69969
11
5.9
11
80
7
62
63
1
3
31
1.19
70204--70240
19
1.9
19
89
10
58
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70225--70297
20
3.9
18
72
19
53
43
0
0
56
0.99
70168--70299
33
4.1
33
71
19
109
38
0
1
59
1.12
72383--72426
22
2.1
20
87
8
61
68
2
4
25
1.20
73063--73105
14
3.0
14
82
3
50
69
0
0
30
0.88

Tables:   1

The End!