Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold99
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1377724
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 13826 characters in sequence are not A, C, G, or T
File 6 of 10
Found at i:685195 original size:28 final size:28
Alignment explanation
Indices: 685161--686032 Score: 1075
Period size: 28 Copynumber: 30.5 Consensus size: 28
685151 CGTTCATCTC
*
685161 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
685189 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
* *
685218 TTCAAAGCCCACAAGCCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
*
685247 TTTAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
685275 TTCAAAGCCCACAAGTCAGTGGCA-CCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
* *
685303 TTCAAAGCCCACGCAAGTCAATGGCACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCATCCT
685333 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
685361 TTCAAAGCCCACAAGTCAGTGACACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
* *
685390 TTCAAAGCCCATAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* **
685418 TTCAAAGCCCACAAGTTAGTGGCACTATT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
* *
685447 TTCAAAGCCCACAAGTTAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
685475 TTCAAAACCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
685503 TTCAAAGCCCACAAGCCAGTGGCA-CTCT
1 TTCAAAGCCCACAAGTCAGTGGCATC-CT
685531 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
685559 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
685587 TTCAAAGCCCACGCAAGTCATTGGCACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCATCCT
* *
685617 TTCAAAGCCCCCAAGTCAGTGGCATCCA
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
685645 TTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
* *
685674 TTCAAAGCCCACAAGTTAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
685702 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
685730 TTCAAAGCCCACAAGCCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
685758 TTCAAAGCCCATAAGTTAGTGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
685786 TTCAAAGCCCACAAGTCAGTGACA-CTCT
1 TTCAAAGCCCACAAGTCAGTGGCATC-CT
***
685814 TTCAAAGCCCACGCAAGTCAGTGGTGCCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCATCCT
* *
685844 TTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
*
685873 TTCAAAGCCCATAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
685901 TTCAAAGCCCACAAGTCAATGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
685929 TTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
* * * *
685958 TTCAAAACCCACAAGCCAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGG-CA-TCCT
* * *
685988 TTCAAAACCCACACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-A-TCCT
686020 TTCAAAGCCCACA
1 TTCAAAGCCCACA
686033 CAAGTTAATG
Statistics
Matches: 747, Mismatches: 75, Indels: 40
0.87 0.09 0.05
Matches are distributed among these distances:
27 3 0.00
28 449 0.60
29 175 0.23
30 92 0.12
31 3 0.00
32 25 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:685673 original size:284 final size:284
Alignment explanation
Indices: 685161--686032 Score: 1291
Period size: 284 Copynumber: 3.0 Consensus size: 284
685151 CGTTCATCTC
*
685161 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGC
*
685226 CCACAAGCCAGTGGCACTCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT
65 CCACAAGCCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT
685291 CAGTGGCACCTTTTCAAAGCCCACGCAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGC
129 CAGTGGCACCTTTTCAAAGCCCACGCAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGC
* * * *
685356 ATCCTTTCAAAGCCCACAAGTCAGTGACACTCTTTTCAAAGCCCATAAGTTAGTGGCATCCTTTC
194 ATCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATCTTTTC
* *
685421 AAAGCCCACAAGTTAGTGGCACTATT
259 AAAGCCCACAAGTCAGTGGCACTCTT
* *
685447 TTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAACCCACAAGTCAGTGGCATCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCC
685512 CACAAGCCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
66 CACAAGCCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * *
685577 GTGGCACCCTTTCAAAGCCCACGCAAGTCATTGGCACCCTTTCAAAGCCCCCAAGTCAGTGGCAT
131 GTGGCACCTTTTCAAAGCCCACGCAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
*
685642 CCATTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAA
196 CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAA
*
685707 AGCCCACAAGTCAGTGGCA-TCCT
261 AGCCCACAAGTCAGTGGCACTCTT
** * * * *
685730 TTCAAAGCCCACAAGCCAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGCATTCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCC
* * ***
685795 CACAAGTCAGTGACACTCTTTCAAAGCCCACGCAAGTCAGTGGTGCCCTTTCAAAGCCCACAAGT
66 CACAAGCCAGTGGCACTCTTTCAAAGCCCA--CAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT
* * * * *
685860 TAGTGGCACTCTTTTCAAAGCCCA--TAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGG
129 CAGTGGCAC-CTTTTCAAAGCCCACGCAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGG
* * ** *
685923 CACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAACCCACAAGCCAGTGGTAACTCTT
193 CATCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGG-CA-TCTT
* *
685988 TTCAAAACCCACACGAGTCGGTGGCAACTCTT
256 TTCAAAGCCCACA--AGTCAGTGGC-ACTCTT
686020 TTCAAAGCCCACA
1 TTCAAAGCCCACA
686033 CAAGTTAATG
Statistics
Matches: 533, Mismatches: 44, Indels: 14
0.90 0.07 0.02
Matches are distributed among these distances:
283 87 0.16
284 272 0.51
285 69 0.13
286 79 0.15
288 9 0.02
289 1 0.00
290 16 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (284 bp):
TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCC
CACAAGCCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
GTGGCACCTTTTCAAAGCCCACGCAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAA
AGCCCACAAGTCAGTGGCACTCTT
Found at i:685689 original size:227 final size:228
Alignment explanation
Indices: 685161--686032 Score: 1243
Period size: 227 Copynumber: 3.8 Consensus size: 228
685151 CGTTCATCTC
685161 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* * *
685226 CCACAAGCCAGTGGCACTCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT
66 CCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGC
* *
685291 CAGTGGCAC-CTTTTCAAAGCCCACGCAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGG
130 CAGTGGCACTCTTTTCAAAGCCCA--CAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG
* * *
685355 CATCCTTTCAAAGCCCA--CAAGTCAGTGACACTCTT
193 CACCCTTTCAAAGCCCACGCAAGTCAGTGGCAC-CCT
* * *
685390 TTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACTATTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* *
685455 CCACAAGTTAGTGGCATCTTTTCAAAACCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGCC
66 CCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGCC
685520 AGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC
131 AGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC
*
685584 CCTTTCAAAGCCCACGCAAGTCATTGGCACCCT
196 CCTTTCAAAGCCCACGCAAGTCAGTGGCACCCT
* * * *
685617 TTCAAAGCCCCCAAGTCAGTGGCATCCATTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
*
685682 CCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGCC
66 CCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGCC
* * * * *
685747 AGTGGCAC-CCTTTCAAAGCCCATAAGTTAGTGGCATTCTTTCAAAGCCCACAAGTCAGTGACAC
131 AGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC
* **
685811 TCTTTCAAAGCCCACGCAAGTCAGTGGTGCCCT
196 CCTTTCAAAGCCCACGCAAGTCAGTGGCACCCT
* * *
685844 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCATAAGTCAGTGGCA-TCCTTTCAAAG
1 TTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
* * * * * *
685908 CCCACAAGTCAATGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAACCCACAAG
65 CCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAG
* * * *
685973 CCAGTGGTAACTCTTTTCAAAACCCACACGAGTCGGTGGCAACTCTTTTCAAAGCCCACA
129 CCAGTGG-CACTCTTTTCAAAGCCCACA--AGTCAGTGGC-A-TCCTTTCAAAGCCCACA
686033 CAAGTTAATG
Statistics
Matches: 581, Mismatches: 50, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
226 54 0.09
227 285 0.49
228 126 0.22
229 79 0.14
230 13 0.02
232 8 0.01
233 1 0.00
234 15 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (228 bp):
TTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
CCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGCC
AGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC
CCTTTCAAAGCCCACGCAAGTCAGTGGCACCCT
Found at i:691801 original size:185 final size:185
Alignment explanation
Indices: 691483--691853 Score: 625
Period size: 185 Copynumber: 2.0 Consensus size: 185
691473 GGGCGATTCA
691483 TCTACCGATCTTCCTCACATCAATCAATATACCTCTTATCATGCCATAAAAATCTCCAATTGCGA
1 TCTACCGATCTTCCTCACATCAATCAATATACCTCTTATCATGCCATAAAAATCTCCAATTGCGA
* * * ** *
691548 AGGATATTAAGTTGGGTGTGCCTCATATTCCCTATCGTTGGGGTCGAGCACACGTCGTGATAACC
66 AGGATATTAAGTCGAGTGTGCCTCATATGCCCTATCGTTGGGGTCGAGCACACGTCACGACAACC
691613 TTTCCAAGGGTACTTCTTCCACCCTCTAGAACCTTCAAATCAACCTGAAATAAAT
131 TTTCCAAGGGTACTTCTTCCACCCTCTAGAACCTTCAAATCAACCTGAAATAAAT
* *
691668 TCTACTGATCTTCCTCACATCAATCAATATACCTCTTATCATGCCATAAAAATTTCCAATTGCGA
1 TCTACCGATCTTCCTCACATCAATCAATATACCTCTTATCATGCCATAAAAATCTCCAATTGCGA
* *
691733 GGGATATTAAGTCGAGTGTGCCTCATATGCCCTATCGTTGGGGTCGAGCACATGTCACGACAACC
66 AGGATATTAAGTCGAGTGTGCCTCATATGCCCTATCGTTGGGGTCGAGCACACGTCACGACAACC
* * *
691798 TTTCTAAGGGTACTTCTTCCACCCTCTAGAACCTTCAAATCGATCTGAAATAAAT
131 TTTCCAAGGGTACTTCTTCCACCCTCTAGAACCTTCAAATCAACCTGAAATAAAT
691853 T
1 T
691854 GAGAAAGCGG
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
185 173 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (185 bp):
TCTACCGATCTTCCTCACATCAATCAATATACCTCTTATCATGCCATAAAAATCTCCAATTGCGA
AGGATATTAAGTCGAGTGTGCCTCATATGCCCTATCGTTGGGGTCGAGCACACGTCACGACAACC
TTTCCAAGGGTACTTCTTCCACCCTCTAGAACCTTCAAATCAACCTGAAATAAAT
Found at i:692121 original size:27 final size:27
Alignment explanation
Indices: 692077--692139 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
692067 ATTTATCGGA
* * *
692077 GATACTCTAACCCCATTCTTCCAAGGG
1 GATACTCCAACCCCATTCCTCCAAGAG
* * *
692104 GATACTCCAATCCTATTCCTCTAAGAG
1 GATACTCCAACCCCATTCCTCCAAGAG
692131 GATACTCCA
1 GATACTCCA
692140 GCCTCATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.27
Consensus pattern (27 bp):
GATACTCCAACCCCATTCCTCCAAGAG
Found at i:696760 original size:26 final size:26
Alignment explanation
Indices: 696723--696802 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
696713 TCTTAGTTTA
*
696723 AAACTGTTTCTTGGTTTTGATTAAAAC
1 AAAC-GTTTCTTGATTTTGATTAAAAC
* * * *
696750 CAACGTTTCTTAATTTTAAATAAAAC
1 AAACGTTTCTTGATTTTGATTAAAAC
* *
696776 AAATGTTACTTGATTTTGATTAAAAC
1 AAACGTTTCTTGATTTTGATTAAAAC
696802 A
1 A
696803 GATTTAATTT
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 39 0.93
27 3 0.07
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (26 bp):
AAACGTTTCTTGATTTTGATTAAAAC
Found at i:703105 original size:61 final size:60
Alignment explanation
Indices: 703029--703148 Score: 197
Period size: 61 Copynumber: 2.0 Consensus size: 60
703019 TTATTACGAC
703029 TGATAACTAATTTAAAGACCAAGTTGTCTAATAAA-TTAATTATTTTAAATTTAAAATAAAA
1 TGATAACTAATTTAAAGACCAAGTTGTCTAATAAATTTAATTA--TTAAATTTAAAATAAAA
* *
703090 TGATAATTAATTTAAAGATCAAGTTGTCTAATAAATTTAATTATTAAATTTAAAATAAA
1 TGATAACTAATTTAAAGACCAAGTTGTCTAATAAATTTAATTATTAAATTTAAAATAAA
703149 TTATTTTAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
60 16 0.29
61 33 0.59
62 7 0.12
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (60 bp):
TGATAACTAATTTAAAGACCAAGTTGTCTAATAAATTTAATTATTAAATTTAAAATAAAA
Found at i:703149 original size:24 final size:24
Alignment explanation
Indices: 703119--703178 Score: 83
Period size: 21 Copynumber: 2.7 Consensus size: 24
703109 CAAGTTGTCT
703119 AATAAATTTAATTATTAAATTTAA
1 AATAAATTTAATTATTAAATTTAA
703143 AATAAA-TT-ATT-TTAAATTTAA
1 AATAAATTTAATTATTAAATTTAA
*
703164 AAT-AATTTATTTATT
1 AATAAATTTAATTATT
703179 TATTAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.06
21 15 0.47
22 5 0.16
23 4 0.12
24 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
AATAAATTTAATTATTAAATTTAA
Found at i:703206 original size:22 final size:21
Alignment explanation
Indices: 703133--703206 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 21
703123 AATTTAATTA
*
703133 TTAAATTT-AAAATAAATTATT
1 TTAAATTTAAAAATAATTTA-T
703154 TTAAATTT-AAAATAATTTAT
1 TTAAATTTAAAAATAATTTAT
** *
703174 TTATTTATTAAAAATATTTTTAT
1 TTAAAT-TTAAAAATA-ATTTAT
703197 TTAAATTTAA
1 TTAAATTTAA
703207 TTAAAAATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
20 5 0.11
21 20 0.45
22 10 0.23
23 9 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAAATTTAAAAATAATTTAT
Found at i:703214 original size:26 final size:23
Alignment explanation
Indices: 703169--703217 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
703159 TTTAAAATAA
703169 TTTATTTATTTATTAAAAATATT
1 TTTATTTATTTATTAAAAATATT
703192 TTTATTTAAATTTAATTAAAAATATT
1 TTTATTT--ATTT-ATTAAAAATATT
703218 AATATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.30
25 4 0.17
26 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTATTTATTTATTAAAAATATT
Found at i:704274 original size:15 final size:16
Alignment explanation
Indices: 704256--704288 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
704246 TTTTGAAGTT
704256 TTATATTCTTAA-ATA
1 TTATATTCTTAATATA
*
704271 TTATATTTTTAATATA
1 TTATATTCTTAATATA
704287 TT
1 TT
704289 TTAATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATATTCTTAATATA
Found at i:704464 original size:60 final size:60
Alignment explanation
Indices: 704399--704531 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 60
704389 ATTTTAAAGA
*
704399 ATAA-TTAATAAT-AACTCAATAAAACTATATGTTATATTACTTATGATAATCTTATAATAT
1 ATAATTTAATAATAAAC-AAATAAAA-TATATGTTATATTACTTATGATAATCTTATAATAT
** * * *
704459 ATAATTTAATGTTAAACAAATTAAATATGTGTTATATTGCTTATGATAATCTTAT-A-AT
1 ATAATTTAATAATAAACAAATAAAATATATGTTATATTACTTATGATAATCTTATAATAT
*
704517 GTAATTTAAT-ATAAA
1 ATAATTTAATAATAAA
704532 TTCTAATGGG
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
57 4 0.06
58 11 0.17
59 1 0.02
60 32 0.51
61 12 0.19
62 3 0.05
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (60 bp):
ATAATTTAATAATAAACAAATAAAATATATGTTATATTACTTATGATAATCTTATAATAT
Found at i:705533 original size:30 final size:30
Alignment explanation
Indices: 705483--705548 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
705473 AATTAACTAA
705483 TTTAATTTCATAATAAATTTATTATTATAT
1 TTTAATTTCATAATAAATTTATTATTATAT
*
705513 TTTATTTTGCATAA-AAATTTATTATTATAT
1 TTTAATTT-CATAATAAATTTATTATTATAT
705543 TTTAAT
1 TTTAAT
705549 ACACTTGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 28 0.85
31 5 0.15
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (30 bp):
TTTAATTTCATAATAAATTTATTATTATAT
Found at i:706193 original size:2 final size:2
Alignment explanation
Indices: 706186--706217 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
706176 TATTAAGTTC
706186 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
706218 TTCATTTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:707285 original size:37 final size:37
Alignment explanation
Indices: 707235--707309 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 37
707225 ATTTTAAATA
* *
707235 TTTAAATAATTAATTTTTTA-ATAATAAATAGTATTAT
1 TTTAAATAATTAATATTATACA-AATAAATAGTATTAT
* * *
707272 TTTAAGTATTTAATATTATACAAATAAATATTATTAT
1 TTTAAATAATTAATATTATACAAATAAATAGTATTAT
707309 T
1 T
707310 AAAATATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 31 0.97
38 1 0.03
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (37 bp):
TTTAAATAATTAATATTATACAAATAAATAGTATTAT
Found at i:707466 original size:17 final size:16
Alignment explanation
Indices: 707421--707467 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
707411 GAAAATTGTA
707421 AAATAATATTTT-AAT
1 AAATAATATTTTAAAT
*
707436 -AATAATTATATTAATAT
1 AAATAA-TATTTTAA-AT
707453 AAATAATATTTTAAA
1 AAATAATATTTTAAA
707468 ATATTTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
14 5 0.19
15 5 0.19
16 2 0.08
17 9 0.35
18 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATAATATTTTAAAT
Found at i:707477 original size:25 final size:26
Alignment explanation
Indices: 707438--707496 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
707428 ATTTTAATAA
*
707438 TAATTATATTAATATAAATAATATTT
1 TAATAATATTAATATAAATAATATTT
* * *
707464 TAA-AATATTTATATAATTAATGTTT
1 TAATAATATTAATATAAATAATATTT
707489 TAATAATA
1 TAATAATA
707497 AATAATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 21 0.75
26 7 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
TAATAATATTAATATAAATAATATTT
Found at i:708213 original size:49 final size:49
Alignment explanation
Indices: 708160--708274 Score: 178
Period size: 49 Copynumber: 2.3 Consensus size: 49
708150 TGCAAAAGAA
*
708160 GTAGTCGTAATTGTTGATTATTCTTCACCAACCTTGATAATCGAGAGAG
1 GTAGTCGTAATTGTTGATTATTCTTCACCAACCTTGATAATCGACAGAG
*
708209 GTAGTCGTAATTGTTGATTATTCTTTACCAACCTTGATAATCGACAGAG
1 GTAGTCGTAATTGTTGATTATTCTTCACCAACCTTGATAATCGACAGAG
* *
708258 AT-GACCGTAATTGTTGA
1 GTAG-TCGTAATTGTTGA
708275 CTCTAAGCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
48 1 0.02
49 60 0.98
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (49 bp):
GTAGTCGTAATTGTTGATTATTCTTCACCAACCTTGATAATCGACAGAG
Found at i:708551 original size:19 final size:19
Alignment explanation
Indices: 708516--708552 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
708506 GGTTATCGAG
**
708516 GCACTGTTCACGTATACGA
1 GCACTGTTCACACATACGA
708535 GCACTGTTCACACATACG
1 GCACTGTTCACACATACG
708553 GTTACTGTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (19 bp):
GCACTGTTCACACATACGA
Found at i:709135 original size:76 final size:76
Alignment explanation
Indices: 709042--709193 Score: 295
Period size: 76 Copynumber: 2.0 Consensus size: 76
709032 AGCTTCTACT
709042 TCAGAGTTTACCAGATTCGTATGATCAACTCATCATTAATTTAACAAGCAACAGCCAAACAAATT
1 TCAGAGTTTACCAGATTCGTATGATCAACTCATCATTAATTTAACAAGCAACAGCCAAACAAATT
709107 GCCTAGTCTTC
66 GCCTAGTCTTC
*
709118 TCAGAGTTTACTAGATTCGTATGATCAACTCATCATTAATTTAACAAGCAACAGCCAAACAAATT
1 TCAGAGTTTACCAGATTCGTATGATCAACTCATCATTAATTTAACAAGCAACAGCCAAACAAATT
709183 GCCTAGTCTTC
66 GCCTAGTCTTC
709194 GATGACATTG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.30
Consensus pattern (76 bp):
TCAGAGTTTACCAGATTCGTATGATCAACTCATCATTAATTTAACAAGCAACAGCCAAACAAATT
GCCTAGTCTTC
Found at i:712012 original size:176 final size:177
Alignment explanation
Indices: 711717--712071 Score: 694
Period size: 176 Copynumber: 2.0 Consensus size: 177
711707 ATTAAAGGCG
711717 TAGTTGGCTAGAGAGTTTGACATGAAAGGACTTGGGACCGGCAAACAAGATTCTAGGGATACAAA
1 TAGTTGGCTAGAGAGTTTGACATGAAAGGACTTGGGACCGGCAAACAAGATTCTAGGGATACAAA
711782 TTCATCGAGACAGAAATAATAAGAAGATTTAGCTTTCTCAAAAGAATTATCTGGAGAAGATTTTG
66 TTCATCGAGACAGAAATAATAAGAAGATTTAGCTTTCTCAAAAGAATTATCTGGAGAAGATTTTG
711847 CGATGCTTCAATATGCAAAATTGTAAGCCAATTTCAACCCCACTTCC
131 CGATGCTTCAATATGCAAAATTGTAAGCCAATTTCAACCCCACTTCC
*
711894 TAGTTGGCTAGAGAGTTTGACATG-AAGGACTTGGGACCGGCAAACAAGATTCTAGGGATGCAAA
1 TAGTTGGCTAGAGAGTTTGACATGAAAGGACTTGGGACCGGCAAACAAGATTCTAGGGATACAAA
711958 TTCATCGAGACAGAAATAATAAGAAGATTTAGCTTTCTCAAAAGAATTATCTGGAGAAGATTTTG
66 TTCATCGAGACAGAAATAATAAGAAGATTTAGCTTTCTCAAAAGAATTATCTGGAGAAGATTTTG
712023 CGATGCTTCAATATGCAAAATTGTAAGCCAATTTCAACCCCACTTCC
131 CGATGCTTCAATATGCAAAATTGTAAGCCAATTTCAACCCCACTTCC
712070 TA
1 TA
712072 TTAATTTCAA
Statistics
Matches: 177, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
176 153 0.86
177 24 0.14
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (177 bp):
TAGTTGGCTAGAGAGTTTGACATGAAAGGACTTGGGACCGGCAAACAAGATTCTAGGGATACAAA
TTCATCGAGACAGAAATAATAAGAAGATTTAGCTTTCTCAAAAGAATTATCTGGAGAAGATTTTG
CGATGCTTCAATATGCAAAATTGTAAGCCAATTTCAACCCCACTTCC
Found at i:712958 original size:49 final size:50
Alignment explanation
Indices: 712896--713013 Score: 175
Period size: 49 Copynumber: 2.4 Consensus size: 50
712886 TGGGTGCAAA
*
712896 AGAGGTAGCCGTAATTGTTAACTATTCTTTACTAACC-TTGACAATCGAG
1 AGAGGTAGCCGTAATTGTTAACTATTCTTTACCAACCTTTGACAATCGAG
* * * * *
712945 AGAGGTGGTCGTAATTGTTGACTCTTTTTTACCAACCTTTGACAATCGAG
1 AGAGGTAGCCGTAATTGTTAACTATTCTTTACCAACCTTTGACAATCGAG
712995 AGAGGTAGCCGTAATTGTT
1 AGAGGTAGCCGTAATTGTT
713014 GACTCTAAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 31 0.52
50 29 0.48
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (50 bp):
AGAGGTAGCCGTAATTGTTAACTATTCTTTACCAACCTTTGACAATCGAG
Found at i:713008 original size:50 final size:49
Alignment explanation
Indices: 712896--713019 Score: 185
Period size: 50 Copynumber: 2.5 Consensus size: 49
712886 TGGGTGCAAA
* * *
712896 AGAGGTAGCCGTAATTGTTAACTATTCTTTACTAACCTTGACAATCGAG
1 AGAGGTAGCCGTAATTGTTGACTCTTCTTTACCAACCTTGACAATCGAG
* * *
712945 AGAGGTGGTCGTAATTGTTGACTCTTTTTTACCAACCTTTGACAATCGAG
1 AGAGGTAGCCGTAATTGTTGACTCTTCTTTACCAACC-TTGACAATCGAG
712995 AGAGGTAGCCGTAATTGTTGACTCT
1 AGAGGTAGCCGTAATTGTTGACTCT
713020 AAGTAACTCA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 31 0.47
50 35 0.53
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34
Consensus pattern (49 bp):
AGAGGTAGCCGTAATTGTTGACTCTTCTTTACCAACCTTGACAATCGAG
Found at i:714089 original size:5 final size:5
Alignment explanation
Indices: 714079--714117 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
714069 AGCAAGACAG
* *
714079 AGAAA AGAAA ATAAA AGAAA ATAAA AGAAA AGAAA AGAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAA
714118 GAAAGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (5 bp):
AGAAA
Found at i:716440 original size:17 final size:17
Alignment explanation
Indices: 716420--716473 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
716410 ATTTTTTATT
716420 TAATATTTAATTTTTAG
1 TAATATTTAATTTTTAG
*
716437 TAATATGTCAATTTTT--
1 TAATAT-TTAATTTTTAG
* *
716453 T-TTATATAATTTTTAG
1 TAATATTTAATTTTTAG
716469 TAATA
1 TAATA
716474 AAACTTTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
14 7 0.25
15 3 0.11
16 2 0.07
17 8 0.29
18 8 0.29
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (17 bp):
TAATATTTAATTTTTAG
Found at i:717169 original size:26 final size:28
Alignment explanation
Indices: 717107--717169 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 28
717097 TAAATATTTA
* * *
717107 TATAAATATAATTTTATTTATATATTATG
1 TATAAAT-TAATTGTATTTATATATCATC
*
717136 TATTAATT-ATTGTATTTA-ATATCATC
1 TATAAATTAATTGTATTTATATATCATC
717162 TATAAATT
1 TATAAATT
717170 TTATATAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 13 0.45
27 9 0.31
28 1 0.03
29 6 0.21
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (28 bp):
TATAAATTAATTGTATTTATATATCATC
Found at i:721452 original size:156 final size:157
Alignment explanation
Indices: 721268--721594 Score: 405
Period size: 156 Copynumber: 2.1 Consensus size: 157
721258 TAGTTCTAAT
*
721268 GAAAAATTACTAAACTGCCTTTAAGGTATAACTTCGATGT-AAAAGTATCCC-AGTAACCCTAAT
1 GAAAAATTACTAAACTGCCTTTAAGGTATAACTTCGATATCAAAA-TATCCCGA-TAACCCTAA-
** * * *
721331 A-GACACT-AAAATGATCACAAATGGGATAAACCTATCCTAAATGTACACTTTTGACATAAAAGC
63 AGGAC-CTAAAAATGATCACAAATAAGATAAACATATCCTAAATGCACACCTTTGACATAAAAGC
** *
721394 ATTTCGGTGACAACCTAGGACTCGATTCTAG
127 ATCCCAGTGACAACCTAGGACTCGATTCTAG
* *
721425 G-AAAATTACGTAAA-TGCCTTTAAGGTATACCTTTGATATCAAAATATCCCGATAACCCTAAAG
1 GAAAAATTAC-TAAACTGCCTTTAAGGTATAACTTCGATATCAAAATATCCCGATAACCCTAAAG
* * * * * *
721488 GACTTAAAAATTATCATAAATAAGATGAACATATCCTAAATGCACACCTTTGGCATAAAAGTATC
65 GACCTAAAAATGATCACAAATAAGATAAACATATCCTAAATGCACACCTTTGACATAAAAGCATC
*
721553 CCAGTGACAACCTAGGATTCGATTCTAG
130 CCAGTGACAACCTAGGACTCGATTCTAG
721581 GAAAAATTACTAAA
1 GAAAAATTACTAAA
721595 ATGCTCTTAT
Statistics
Matches: 146, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
155 2 0.01
156 126 0.86
157 18 0.12
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (157 bp):
GAAAAATTACTAAACTGCCTTTAAGGTATAACTTCGATATCAAAATATCCCGATAACCCTAAAGG
ACCTAAAAATGATCACAAATAAGATAAACATATCCTAAATGCACACCTTTGACATAAAAGCATCC
CAGTGACAACCTAGGACTCGATTCTAG
Found at i:721671 original size:156 final size:155
Alignment explanation
Indices: 721270--721671 Score: 367
Period size: 156 Copynumber: 2.6 Consensus size: 155
721260 GTTCTAATGA
* * **
721270 AAAATTAC-TAAACTGCCTTTAAGGTATAACTTCGATGT-AAAAGTATCCC-AGTAACCCTAATA
1 AAAATTACGTAAA-TGCCTTTAAGGTATACCTTCAACATCAAAA-TATCCCGA-TAACCCTAA-A
* * * * * * * *
721332 GACACT-AAAATGATCACAAATGGGATAAACCTATCCTAAATGTACACTTTTGACATAAAAGCAT
62 G-GACTAAAAATTATCATAAATAGGATGAACATATCCTAAATGCACACCTTTGACATAAAAGCAT
** *
721396 TTCGGTGACAACCTAGGACTCGATTCTAGG
126 CCCAGTGACAACCTAGGACTCGATTCTAGG
** *
721426 AAAATTACGTAAATGCCTTTAAGGTATACCTTTGATATCAAAATATCCCGATAACCCTAAAGGAC
1 AAAATTACGTAAATGCCTTTAAGGTATACCTTCAACATCAAAATATCCCGATAACCCTAAAGGAC
* * *
721491 TTAAAAATTATCATAAATAAGATGAACATATCCTAAATGCACACCTTTGGCATAAAAGTATCCCA
66 -TAAAAATTATCATAAATAGGATGAACATATCCTAAATGCACACCTTTGACATAAAAGCATCCCA
*
721556 GTGACAACCTAGGATTCGATTCTAGG
130 GTGACAACCTAGGACTCGATTCTAGG
* * *
721582 AAAAATTAC-TAAAATG-CTCTTATTGGTATA-CTGTCAACAT-AAAAGTATCCTGATAACCTTA
1 -AAAATTACGT-AAATGCCT-TTA-AGGTATACCT-TCAACATCAAAA-TATCCCGATAACCCT-
*
721643 AAAGAGAC-AAAAATT-TTATAAA-AGGATGA
59 AAAG-GACTAAAAATTATCATAAATAGGATGA
721672 CTTTTACCCT
Statistics
Matches: 207, Mismatches: 26, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
154 2 0.01
155 3 0.01
156 128 0.62
157 37 0.18
158 30 0.14
159 4 0.02
160 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.28
Consensus pattern (155 bp):
AAAATTACGTAAATGCCTTTAAGGTATACCTTCAACATCAAAATATCCCGATAACCCTAAAGGAC
TAAAAATTATCATAAATAGGATGAACATATCCTAAATGCACACCTTTGACATAAAAGCATCCCAG
TGACAACCTAGGACTCGATTCTAGG
Found at i:724194 original size:152 final size:151
Alignment explanation
Indices: 724005--724517 Score: 518
Period size: 152 Copynumber: 3.4 Consensus size: 151
723995 ATTGTTATAC
* * * * * * **
724005 AAACTTAGAAAAATCCCATAAAAAAATTTACGAAGTAGGAAACTCTAAATTTTGAAACAGGAAAA
1 AAACTTA-AAAAATCCTACAGAAAAATTTATGGAGTAGAAAACTCTGTATTTTGAAACA-GAAAA
* *
724070 ATTTTAAAACTCACAAAATAAATT-AAATCTTTCAAAACTGATTTACTATGAATTAAAAAATAAT
64 ATTTTAAAACTCATAAAATAAATTAAAATCTTTCAAAACTGATTTACTATGAATTAAACAATAAT
724134 ATTTGAAAAATTTTAAAAATTAT
129 ATTTGAAAAATTTTAAAAATTAT
* * * * * *
724157 AAACTTAAAAAATCCTACTAGAGAAATTTTTGGAGTAGAAAATTCTGTATCTTAATAATAGAAAA
1 AAACTTAAAAAATCCTAC-AGAAAAATTTATGGAGTAGAAAACTCTGTATTTTGA-AACAGAAAA
* *
724222 ATTCTT-AAACTCATAAAATAAATTAAAAT-TTTCAAAACTGATTTAGTATGAGTTAAACAATAA
64 ATT-TTAAAACTCATAAAATAAATTAAAATCTTTCAAAACTGATTTACTATGAATTAAACAATAA
*
724285 TATTTGAAGAATTTTAAAAATTAT
128 TATTTGAAAAATTTTAAAAATTAT
* * * * * * *
724309 AAACTTAAAAAAATCCTA-ACGAAAAATTTATAGAGAAGAAAGCTTTGTGTTTTGTAACAAAAAA
1 AAACTT-AAAAAATCCTACA-GAAAAATTTATGGAGTAGAAAACTCTGTATTTTGAAAC-AGAAA
* * ** * * *
724373 AATTCTAAAACTCATAAAATAAATTGAGTTCTTT-AAAACTAATTTAAC-ATCAATTAAGCAATA
63 AATTTTAAAACTCATAAAATAAATTAAAATCTTTCAAAACTGATTT-ACTATGAATTAAACAATA
* * *
724436 ATAGTT-AAAGAATTTTGAAAATCAT
127 ATATTTGAAA-AATTTTAAAAATTAT
* * * *
724461 AAACTTAGAAAAATTCTACAGAAAAATTTACGGAGTAGAAAACTCCGTATGTTGAAA
1 AAACTTA-AAAAATCCTACAGAAAAATTTATGGAGTAGAAAACTCTGTATTTTGAAA
724518 AAAGGAAAAA
Statistics
Matches: 293, Mismatches: 55, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
151 16 0.05
152 252 0.86
153 25 0.09
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (151 bp):
AAACTTAAAAAATCCTACAGAAAAATTTATGGAGTAGAAAACTCTGTATTTTGAAACAGAAAAAT
TTTAAAACTCATAAAATAAATTAAAATCTTTCAAAACTGATTTACTATGAATTAAACAATAATAT
TTGAAAAATTTTAAAAATTAT
Found at i:733017 original size:15 final size:15
Alignment explanation
Indices: 732997--733037 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
732987 GATAAAGTGT
732997 TTGAAAAAAAAAAAA
1 TTGAAAAAAAAAAAA
733012 TTGAAAAAAAAAAAA
1 TTGAAAAAAAAAAAA
733027 ---AAAAAAAAAAA
1 TTGAAAAAAAAAAA
733038 TTTAAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.42
15 15 0.58
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (15 bp):
TTGAAAAAAAAAAAA
Found at i:733066 original size:21 final size:21
Alignment explanation
Indices: 733042--733098 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
733032 AAAAAATTTA
733042 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
733063 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
733084 AATGTATCGATACAT
1 AATGTATCGATACAT
733099 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:733178 original size:19 final size:19
Alignment explanation
Indices: 733154--733221 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
733144 AATTCAACAA
733154 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
733173 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
733188 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
733205 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
733222 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:733193 original size:13 final size:13
Alignment explanation
Indices: 733175--733199 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
733165 ACATAAGTTT
733175 TGTATCGATACAA
1 TGTATCGATACAA
733188 TGTATCGATACA
1 TGTATCGATACA
733200 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:733197 original size:32 final size:32
Alignment explanation
Indices: 733156--733218 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
733146 TTCAACAATT
*
733156 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
733188 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
733219 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:733279 original size:13 final size:13
Alignment explanation
Indices: 733261--733286 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
733251 CATTTTTCTG
733261 TGTATCGATACAT
1 TGTATCGATACAT
733274 TGTATCGATACAT
1 TGTATCGATACAT
733287 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:733283 original size:33 final size:33
Alignment explanation
Indices: 733241--733307 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
733231 GCCAAGGAAA
***
733241 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
733274 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
733307 T
1 T
733308 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:735767 original size:52 final size:50
Alignment explanation
Indices: 735637--735769 Score: 142
Period size: 51 Copynumber: 2.6 Consensus size: 50
735627 GTTGAGTTGC
* * *
735637 TCAATTCTCCACAATCGAGGACATTCCAACTCCGATTTTACTTTCAAAACA
1 TCAATT-TTCACAATCGAGGATACTCCAACTCCGATTTTACTTTCAAAACA
* * * * *
735688 TTAATTTTCTATAATCGGGGATACTCCAATTCCGATTTTATTTTCAAAA-A
1 TCAATTTTC-ACAATCGAGGATACTCCAACTCCGATTTTACTTTCAAAACA
735738 TACCAATTTTTCACAATCGAGGATACTCCAAC
1 T--CAA-TTTTCACAATCGAGGATACTCCAAC
735770 CTCGTTATTT
Statistics
Matches: 66, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
50 4 0.06
51 38 0.58
52 19 0.29
53 5 0.08
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (50 bp):
TCAATTTTCACAATCGAGGATACTCCAACTCCGATTTTACTTTCAAAACA
Found at i:735785 original size:28 final size:28
Alignment explanation
Indices: 735753--735834 Score: 105
Period size: 28 Copynumber: 2.9 Consensus size: 28
735743 ATTTTTCACA
735753 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGAGGATACTCCAACCTCGTTATTTC
* *
735781 ATCGAGGATACTCCAACCCCGTTACTTC
1 ATCGAGGATACTCCAACCTCGTTATTTC
*
735809 --CGAGGGAACACTCCAACCTCGTTATT
1 ATCGA-GG-ATACTCCAACCTCGTTATT
735835 ATCTCCAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.06
27 2 0.04
28 42 0.89
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.27
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCTCGTTATTTC
Found at i:737512 original size:32 final size:33
Alignment explanation
Indices: 737471--737539 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
737461 GGCAGTAGCT
737471 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
*
737503 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
737536 TACA
1 TACA
737540 AATCGTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 20 0.57
33 15 0.43
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:737513 original size:13 final size:13
Alignment explanation
Indices: 737495--737519 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
737485 ACAAAACTTA
737495 TGTATCGATACAT
1 TGTATCGATACAT
737508 TGTATCGATACA
1 TGTATCGATACA
737520 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:741442 original size:79 final size:78
Alignment explanation
Indices: 741359--741735 Score: 359
Period size: 79 Copynumber: 4.8 Consensus size: 78
741349 AACAGGGCTA
* * * *
741359 GAGTATCCTCAATTATGGAAAATCAGTGTTCTGGAAATAAAATCGGGGTTAGAGTATCCCCTCGA
1 GAGTATCCCCGATTATGGAAAATCAGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGA
741424 AAATAACAGGGTTG
66 AAATAAC-GGGTTG
* * * * *
741438 GAGTATCCCTGATTATAGAAAATCTACT-TTTTGAAAATAAAATCGGGGTTGGAGTATCGCCTCG
1 GAGTATCCCCGATTATGGAAAATC-AGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCG
*
741502 AAAATAATGGGGTTG
65 AAAATAA-CGGGTTG
* * * * * *
741517 GAGTATCCCCGATTGTGAAAAATC-GAAGCTTTAGAAAT-AAATCCGGGGTTGGAGTATCCCCGC
1 GAGTATCCCCGATTATGGAAAATCAG-TGTTTTGGAAATAAAAT-CGGGGTTGGAGTATCCCCTC
* * *
741580 CAAAGTCACGAGGTTG
64 GAAAATAACG-GGTTG
* * * * * * *
741596 GAGTATCCCCGATTGT-GAGAAATCAATATTTTAGAAATAAAGTCGGGATTGGAGTATCCCCCCG
1 GAGTATCCCCGATTATGGA-AAATCAGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCG
741660 AAAATAACGGGATTG
65 AAAATAACGGG-TTG
* * * * *
741675 GAGTATCCCCGATTATGAAAAAT-TGATGTTTTGGAGATAAAACCGGGGTTAGAGTATCCCC
1 GAGTATCCCCGATTATGGAAAATCAG-TGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCC
741736 GAGATGAAAA
Statistics
Matches: 239, Mismatches: 47, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
78 8 0.03
79 225 0.94
80 6 0.03
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (78 bp):
GAGTATCCCCGATTATGGAAAATCAGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGA
AAATAACGGGTTG
Found at i:741648 original size:158 final size:158
Alignment explanation
Indices: 741392--741736 Score: 421
Period size: 158 Copynumber: 2.2 Consensus size: 158
741382 CAGTGTTCTG
* * *
741392 GAAATAAAAT-CGGGGTTAGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAG
1 GAAAT-AAATCCGGGGTTAGAGTATCCCCGCCAAAATAACAGGGTTGGAGTATCCCCGATTATAG
* * * * * *
741456 AAAATCTACTTTTTGAAAATAAAATCGGGGTTGGAGTATCGCCTCGAAAATAATGGGGTTGGAGT
65 AAAATCTACTTTTAGAAAATAAAATCGGGATTGGAGTATCCCCCCGAAAATAACGGGATTGGAGT
*
741521 ATCCCCGATTGTGAAAAATCGAAGCTTTA
130 ATCCCCGATTATGAAAAATCGAAGCTTTA
* * * *
741550 GAAATAAATCCGGGGTTGGAGTATCCCCGCCAAAGTCAC-GAGGTTGGAGTATCCCCGATTGT-G
1 GAAATAAATCCGGGGTTAGAGTATCCCCGCCAAAATAACAG-GGTTGGAGTATCCCCGATTATAG
*
741613 AGAAATCAATA-TTTTAG-AAATAAAGTCGGGATTGGAGTATCCCCCCGAAAATAACGGGATTGG
65 A-AAATC--TACTTTTAGAAAATAAAATCGGGATTGGAGTATCCCCCCGAAAATAACGGGATTGG
* * * *
741676 AGTATCCCCGATTATGAAAAATTGATGTTTTG
127 AGTATCCCCGATTATGAAAAATCGAAGCTTTA
* *
741708 GAGATAAAACCGGGGTTAGAGTATCCCCG
1 GAAATAAATCCGGGGTTAGAGTATCCCCG
741737 AGATGAAAAA
Statistics
Matches: 160, Mismatches: 22, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
157 7 0.04
158 146 0.91
159 5 0.03
160 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (158 bp):
GAAATAAATCCGGGGTTAGAGTATCCCCGCCAAAATAACAGGGTTGGAGTATCCCCGATTATAGA
AAATCTACTTTTAGAAAATAAAATCGGGATTGGAGTATCCCCCCGAAAATAACGGGATTGGAGTA
TCCCCGATTATGAAAAATCGAAGCTTTA
Found at i:741765 original size:50 final size:50
Alignment explanation
Indices: 741675--741794 Score: 159
Period size: 50 Copynumber: 2.4 Consensus size: 50
741665 AACGGGATTG
* ** * * *
741675 GAGTATCCCCGATTATGAAAAATTGATGTTTTGGAGATAAAACCGGGGTTA
1 GAGTATCCCCGA-GATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTA
* *
741726 GAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAGCCGGGGTTG
1 GAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTA
741776 GAGTATCCCCGAGATGAAA
1 GAGTATCCCCGAGATGAAA
741795 CATCTAGAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
50 49 0.80
51 12 0.20
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (50 bp):
GAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTA
Found at i:744157 original size:20 final size:20
Alignment explanation
Indices: 744132--744238 Score: 97
Period size: 20 Copynumber: 4.8 Consensus size: 20
744122 ATATATTGAT
744132 ACAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
*
744152 ACAATGTATCGATACATCTGGGTAAA
1 ACAATGTATCGATACA-AT--G---A
744178 ACCTAGAATGTATCGATACAATGA
1 A-C---AATGTATCGATACAATGA
*
744202 ATAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
*
744222 ATAATGTATCGATACAA
1 ACAATGTATCGATACAA
744239 ATTGTGAAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 20
0.76 0.03 0.21
Matches are distributed among these distances:
20 51 0.69
21 1 0.01
23 1 0.01
24 2 0.03
26 2 0.03
27 2 0.03
29 1 0.01
30 14 0.19
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:744168 original size:62 final size:63
Alignment explanation
Indices: 744071--744237 Score: 192
Period size: 62 Copynumber: 2.6 Consensus size: 63
744061 AAAAATGCCT
* * *
744071 CAATGTATCGATACATTAAAAAATGTATCGATACATCTAGGT-AAACCCAGAATATATTGATA
1 CAATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATATATCGATA
* * * *
744133 CAATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCTAGAATGTATCGATA
1 CAATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATATATCGATA
*
744196 CAATGAATAATGTATCGATACAATGAATAATGTATCGATACA
1 C-------AATGTATCGATACAATGAAAAATGTATCGATACA
744238 AATTGTGAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
62 38 0.43
63 18 0.20
70 33 0.37
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (63 bp):
CAATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATATATCGATA
Found at i:744246 original size:24 final size:20
Alignment explanation
Indices: 744184--744238 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
744174 TAAAACCTAG
744184 AATGTATCGATACAATGAAT
1 AATGTATCGATACAATGAAT
744204 AATGTATCGATACAATGAAT
1 AATGTATCGATACAATGAAT
744224 AATGTATCGATACAA
1 AATGTATCGATACAA
744239 ATTGTGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATGAAT
Found at i:744912 original size:46 final size:44
Alignment explanation
Indices: 744824--745056 Score: 177
Period size: 46 Copynumber: 5.5 Consensus size: 44
744814 AAGGAAGGGG
* ** *
744824 GCGTCCTGCTCTTTGAGGATTAAGGAAAAAG-A-G-AATAAAGT
1 GCGTCTTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAAAGT
* *
744865 GCGGCTTGCTCTTTGAGAACTAGAAGGGAAAAGAAGGAAATAAAGT
1 GCGTCTTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATAAAGT
* * * *
744911 GCGTCCTGCTCTTTAAGGACAAA-GGAAAA-AAGAAAAAAAAAG-
1 GCGTCTTGCTCTTTGAGGACAAAGGGAAAAGAAG-GAAATAAAGT
*
744953 GCATCTTGCTCTTTGAGGACAAAGGGGAAAAAGAAGGAAATGAAA-T
1 GCGTCTTGCTCTTTGAGGACAAA-GGG-AAAAGAAGGAAAT-AAAGT
* ** *
744999 GTGTCTTGCTCTTTGAGGA-AAAATG-AGAGAA-G-AA-AAAG-
1 GCGTCTTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAAAGT
*
745037 GCGTCCTGCTCTTTGAGGAC
1 GCGTCTTGCTCTTTGAGGAC
745057 TAAAAAGTGC
Statistics
Matches: 154, Mismatches: 24, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
38 20 0.13
40 2 0.01
41 17 0.11
42 28 0.18
43 22 0.14
44 6 0.04
45 12 0.08
46 47 0.31
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (44 bp):
GCGTCTTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAAAGT
Found at i:744981 original size:87 final size:90
Alignment explanation
Indices: 744824--745035 Score: 231
Period size: 88 Copynumber: 2.4 Consensus size: 90
744814 AAGGAAGGGG
** * * *
744824 GCGTCCTGCTCTTTGAGGATTAAGG-AAAAAG-AGAATAAAGTGCGGCTTGCTCTTTGAGAACTA
1 GCGTCCTGCTCTTTGAGGAAAAAGGAAAAAAGAAAAAAAAAGTGCAGCTTGCTCTTTGAGAACTA
744887 GAAGGG-AAAAGAAGGAAAT-AAAGT
66 GAAGGGAAAAAGAAGGAAATGAAA-T
* * * *
744911 GCGTCCTGCTCTTTAAGGACAAAGGAAAAAAGAAAAAAAAAG-GCATCTTGCTCTTTGAGGAC-A
1 GCGTCCTGCTCTTTGAGGAAAAAGGAAAAAAGAAAAAAAAAGTGCAGCTTGCTCTTTGAGAACTA
744974 -AAGGGGAAAAAGAAGGAAATGAAAT
66 GAA-GGGAAAAAGAAGGAAATGAAAT
* * * * *
744999 GTGTCTTGCTCTTTGAGGAAAAATGAGAGAAGAAAAA
1 GCGTCCTGCTCTTTGAGGAAAAAGGAAAAAAGAAAAA
745036 GGCGTCCTGC
Statistics
Matches: 105, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
86 2 0.02
87 26 0.25
88 67 0.64
89 10 0.10
ACGTcount: A:0.42, C:0.11, G:0.27, T:0.20
Consensus pattern (90 bp):
GCGTCCTGCTCTTTGAGGAAAAAGGAAAAAAGAAAAAAAAAGTGCAGCTTGCTCTTTGAGAACTA
GAAGGGAAAAAGAAGGAAATGAAAT
Found at i:745133 original size:61 final size:60
Alignment explanation
Indices: 745032--745733 Score: 872
Period size: 61 Copynumber: 11.4 Consensus size: 60
745022 TGAGAGAAGA
** * * *
745032 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCTACCAACTCGTATGGGCTTTGAAAAG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
* * * *
745093 AAAAGACGTCTTGCTCTTTGAGGACTGGAATGTGCCACCAACTTGTGTGGGCTTTGCAAAG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
* * * * *
745154 AGAAA-GCATCTTGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGTCTTTAAAAGG
1 A-AAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G
* * *
745215 AGAAA-GCATCCTGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
1 A-AAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
*
745276 AAAAGGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AAAA-GGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G
* *
745339 AAAAAGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 -AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G
** * *
745400 AAAAGATGTCCTGCTTTTTGAAGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
745460 AAAAAGGCGTCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 -AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
* * *
745522 AAAAGGCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 AAAAGGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
** *
745584 AGAAAGGTTTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 A-AAAGGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G
* *
745647 AAAAGGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
*
745707 AAAATGCGTCCTGCTCTTTGAGGACTG
1 AAAAGGCGTCCTGCTCTTTGAGGACTG
745734 AAGGGTGAAA
Statistics
Matches: 575, Mismatches: 50, Indels: 32
0.88 0.08 0.05
Matches are distributed among these distances:
60 79 0.14
61 292 0.51
62 96 0.17
63 104 0.18
64 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (60 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:745498 original size:246 final size:244
Alignment explanation
Indices: 745032--745735 Score: 963
Period size: 246 Copynumber: 2.9 Consensus size: 244
745022 TGAGAGAAGA
* * *
745032 AAAAGGCGTCCTGCTCTTTGAGGACTA-AAAAGTGCTACCAACTCGTATGGGCTTTGAAAA-G-A
1 AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAA
* * * * * *
745094 AAAGACGTCTTGCTCTTTGAGGACTGGAATGTGCCACCAACTTGTGTGGGCTTTGCAAA-GAGAA
65 AAAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGA-AA
* * * *
745158 AGCA-TCTTGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGTCTTTAAAAGGAGAAAGC
128 AG-AGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAAGC
* * * *
745222 ATCCTGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
191 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAG
745276 AAAAGGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
1 AAAA-GGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
*
745341 AAAGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
65 AAAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * *
745405 ATGTCCTGCTTTTTGAAGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGT
130 A-GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAA-GCGT
* * * *
745470 CCTACTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
193 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAG
* * *
745522 AAAAGGCATCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGA
1 AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
**
745587 AAGGTTTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
66 AAGGCATCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-
* * *
745652 GCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAATGCGT
129 GAGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGCGT
745716 CCTGCTCTTTGAGGACTGAA
193 CCTGCTCTTTGAGGACTGAA
745736 GGGTGAAAGG
Statistics
Matches: 411, Mismatches: 37, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
244 5 0.01
245 119 0.29
246 201 0.49
247 85 0.21
248 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (244 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
AAGGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGA
GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCT
GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAG
Found at i:745653 original size:307 final size:307
Alignment explanation
Indices: 745030--745733 Score: 1033
Period size: 307 Copynumber: 2.3 Consensus size: 307
745020 AATGAGAGAA
* * * * *
745030 GAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCTACCAACTCGTATGGGCTTTGAAAAGAA
1 GAAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAA
* * * *
745095 AAGACGTCTTGCTCTTTGAGGACTGGAATGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAG
65 AAGACGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* * * * * * *
745160 CATCTTGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGTCTTTAAAAGGAGAAAGCATC
130 CATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATC
* * *
745225 CTGCTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGGCGTCCTG
195 CTGCTCTTTGAGGATAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGGCGTCCTG
745290 CTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
260 CTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
745338 GAAAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAA
1 GAAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAA
* * *
745402 AAGATGTCCTGCTTTTTGAAGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAG
65 AAGACGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAA-
* *
745466 GCGTCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGA-AAAGGCA
129 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA-GCA
* * **
745530 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAA-GGTTT
193 TCCTGCTCTTTGAGGA-TAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGA-AAAGGGCGT
745594 CCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
256 CCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
745646 G-AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAA
1 GAAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAA
745710 ATG-CGTCCTGCTCTTTGAGGACTG
66 A-GACGTCCTGCTCTTTGAGGACTG
745734 AAGGGTGAAA
Statistics
Matches: 355, Mismatches: 34, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
306 15 0.04
307 216 0.61
308 121 0.34
309 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (307 bp):
GAAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAA
AGACGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
ATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
TGCTCTTTGAGGATAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGGCGTCCTGC
TCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:745824 original size:100 final size:99
Alignment explanation
Indices: 745652--745832 Score: 258
Period size: 100 Copynumber: 1.8 Consensus size: 99
745642 AAAGGAAAAG
* * * *
745652 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAATGCGTC
1 GCGTCCTGCTCTTTAAGGACTGAAGGTGCCACCAACTTGTATGGGCTTTGAAAAGAAAAGGCGTC
*
745717 CTGCTCTTTGAGGACTGAAGGGTGAAAGGAGAGA
66 CTACTCTTTGAGGACTGAAGGGTGAAAGGAGAGA
*
745751 GCGTCCTGCTCTTTAAGGACTTGGAA-GTGCCACCAACTTGTATGGGCTTT-AAAAGGAGAAGGC
1 GCGTCCTGCTCTTTAAGGAC-T-GAAGGTGCCACCAACTTGTATGGGCTTTGAAAA-GAAAAGGC
*
745814 GTCTTACTCTTTGAGGACT
63 GTCCTACTCTTTGAGGACT
745833 AAAAAATGAA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
99 23 0.32
100 46 0.64
101 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (99 bp):
GCGTCCTGCTCTTTAAGGACTGAAGGTGCCACCAACTTGTATGGGCTTTGAAAAGAAAAGGCGTC
CTACTCTTTGAGGACTGAAGGGTGAAAGGAGAGA
Found at i:746823 original size:1 final size:1
Alignment explanation
Indices: 746817--746881 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
746807 TTCTTTTCTC
* * * * * * * *
746817 TTTTTTTTCTTTGTTTTATTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTGTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
746882 AAAAAGAGGG
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.88
Consensus pattern (1 bp):
T
Found at i:746855 original size:17 final size:16
Alignment explanation
Indices: 746817--746881 Score: 69
Period size: 16 Copynumber: 4.1 Consensus size: 16
746807 TTCTTTTCTC
* *
746817 TTTTTTTTCTTTGTTT
1 TTTTTTTTGTTTTTTT
*
746833 TATTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
* *
746849 GTTTTTTT-TTGTTTT
1 TTTTTTTTGTTTTTTT
*
746864 TTGTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
746880 TT
1 TT
746882 AAAAAGAGGG
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
15 12 0.31
16 27 0.69
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.88
Consensus pattern (16 bp):
TTTTTTTTGTTTTTTT
Found at i:746858 original size:25 final size:25
Alignment explanation
Indices: 746817--746882 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
746807 TTCTTTTCTC
*
746817 TTTTTTT-TCTTTGTTTTATTTTTTG
1 TTTTTTTGT-TTTTTTTTATTTTTTG
*
746842 TTTTTTTGTTTTTTTTTGTTTTTTG
1 TTTTTTTGTTTTTTTTTATTTTTTG
746867 --TTTTTGTTTTTTTTTA
1 TTTTTTTGTTTTTTTTTA
746883 AAAAGAGGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 15 0.41
25 21 0.57
26 1 0.03
ACGTcount: A:0.03, C:0.02, G:0.09, T:0.86
Consensus pattern (25 bp):
TTTTTTTGTTTTTTTTTATTTTTTG
Found at i:746871 original size:31 final size:31
Alignment explanation
Indices: 746819--746879 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
746809 CTTTTCTCTT
746819 TTTTTTCTTTGTTTTATTTTTTGTTTTTTTG
1 TTTTTTCTTTGTTTTATTTTTTGTTTTTTTG
*
746850 TTTTTT-TTTGTTTTTTGTTTTTGTTTTTTT
1 TTTTTTCTTTGTTTTAT-TTTTTGTTTTTTT
746880 TTAAAAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 9 0.32
31 19 0.68
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.87
Consensus pattern (31 bp):
TTTTTTCTTTGTTTTATTTTTTGTTTTTTTG
Found at i:746880 original size:23 final size:24
Alignment explanation
Indices: 746817--746882 Score: 82
Period size: 23 Copynumber: 2.7 Consensus size: 24
746807 TTCTTTTCTC
746817 TTTTTT-TTCTTTGTTTTATTTTTTG
1 TTTTTTGTT-TTT-TTTTATTTTTTG
*
746842 TTTTTTTGTTTTTTTTTGTTTTTTG
1 -TTTTTTGTTTTTTTTTATTTTTTG
746867 -TTTTTGTTTTTTTTTA
1 TTTTTTGTTTTTTTTTA
746883 AAAAGAGGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
23 15 0.41
25 11 0.30
26 9 0.24
27 2 0.05
ACGTcount: A:0.03, C:0.02, G:0.09, T:0.86
Consensus pattern (24 bp):
TTTTTTGTTTTTTTTTATTTTTTG
Found at i:759420 original size:79 final size:79
Alignment explanation
Indices: 759214--759421 Score: 242
Period size: 79 Copynumber: 2.6 Consensus size: 79
759204 TGGGGATAAC
* *
759214 AACGGGGTTGGAGTATCCCCGATTATGGAAAATCAGTG-TTCTGGAAATAAAATCGGGGTTAAAG
1 AACGGGGTTGGAGTATCCCCGATTATGGAAAATCAGAGCTT-TAGAAATAAAATCGGGGTTAAAG
759278 TATCCCCTCAAAAAT
65 TATCCCCTCAAAAAT
** * * * * **
759293 AACAAGGTTGGAGTATCCCTGATTATAGAAAATC-GA-CATTTTGAAAATAAAATTGGGGTTGGA
1 AACGGGGTTGGAGTATCCCCGATTATGGAAAATCAGAGC-TTTAG-AAATAAAATCGGGGTTAAA
*
759356 GTATCCCCTCGAAAAT
64 GTATCCCCTCAAAAAT
* * *
759372 AACGGGGTTAGAGTATCCCCGATTGTGGAAAATCAAAGCTTTAGAAATAA
1 AACGGGGTTGGAGTATCCCCGATTATGGAAAATCAGAGCTTTAGAAATAA
759422 GGCCGAGGTT
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
78 3 0.03
79 97 0.92
80 5 0.05
81 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGGAAAATCAGAGCTTTAGAAATAAAATCGGGGTTAAAGT
ATCCCCTCAAAAAT
Found at i:759441 original size:51 final size:50
Alignment explanation
Indices: 759377--759493 Score: 141
Period size: 51 Copynumber: 2.3 Consensus size: 50
759367 AAAATAACGG
*
759377 GGTTAGAGTATCCCCGATTGTG-GAAAATCAA-AGCTTTAGAAAT-AAGGCCGA
1 GGTTGGAGTATCCCCGATTGTGAG-AAATCAATA-CTTTAGAAATAAAGG-C-A
* *
759428 GGTTGGAGTATCCCTGATTGTGAGAAATCAATATTTTAGAAATAAAGGCA
1 GGTTGGAGTATCCCCGATTGTGAGAAATCAATACTTTAGAAATAAAGGCA
759478 GGATTGGAGTATCCCC
1 GG-TTGGAGTATCCCC
759494 TCGGAAATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
50 3 0.05
51 49 0.84
52 6 0.10
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGAGAAATCAATACTTTAGAAATAAAGGCA
Found at i:759549 original size:130 final size:130
Alignment explanation
Indices: 759297--759571 Score: 322
Period size: 130 Copynumber: 2.1 Consensus size: 130
759287 AAAAATAACA
* *** *
759297 AGGTTGGAGTATCCCTGATTATAGAAAATCGACATTTTGAAAATAAAATTGGGGTTGGAGTATCC
1 AGGTTGGAGTATCCCTGATTATAGAAAATCAACATTTTGAAAATAAAAGCAGGATTGGAGTATCC
* * * **
759362 CCTCGAAAATAACGGGGTTAGAGTATCCCCGATTGTGGAAAATCAAAGCTTTAGAAATAAGGCCG
66 CCTCGAAAATAACGGGATTAGAGTATCCCCAATTATGGAAAATCAAAGCTTTAGAAATAAAACCG
* * *
759427 AGGTTGGAGTATCCCTGATTGT-GAGAAATCAATATTTT-AGAAATAAAGGCAGGATTGGAGTAT
1 AGGTTGGAGTATCCCTGATTATAGA-AAATCAACATTTTGA-AAATAAAAGCAGGATTGGAGTAT
* ** * * *
759490 CCCCTCGGAAATAACGGGATTAGAGTATCCCCAATTAT-GAAGAATTGATGTTTTGGAAATAAAA
64 CCCCTCGAAAATAACGGGATTAGAGTATCCCCAATTATGGAA-AATCAAAGCTTTAGAAATAAAA
759554 CCG
128 CCG
*
759557 GGGTTGGAGTATCCC
1 AGGTTGGAGTATCCC
759572 CGATGTCGCA
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
129 6 0.05
130 116 0.95
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (130 bp):
AGGTTGGAGTATCCCTGATTATAGAAAATCAACATTTTGAAAATAAAAGCAGGATTGGAGTATCC
CCTCGAAAATAACGGGATTAGAGTATCCCCAATTATGGAAAATCAAAGCTTTAGAAATAAAACCG
Found at i:760685 original size:79 final size:78
Alignment explanation
Indices: 760585--761190 Score: 561
Period size: 79 Copynumber: 7.7 Consensus size: 78
760575 TCAGTGTTCT
*
760585 GAAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGAAGTATCCCTGATTATAG
1 GAAAATAAAA-CGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAG
* *
760650 AAAATTGGTGTTTC
65 AAAATTGATGTTTA
* * *
760664 GAAAATAAAATCAGGGTTGGAGTATCCTCTCGAAAATAACAGGGTTGGAGTATCCCTTATTATAG
1 GAAAATAAAA-CGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAG
* *
760729 AAAA-TCAGTGTTTT
65 AAAATTGA-TGTTTA
* * *
760743 GAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGTATCCCTGATTGT-GA
1 GAAAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAG-
760807 AAAATTGATGCTTTA
65 AAAATTGATG-TTTA
** * * *
760822 G-AAATAAGGCCGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTATCTCC-GATTGTG
1 GAAAATAA-AACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATC-CCTGATTAT-
*
760885 AGAAATCAAT-AT-TTTA
63 AGAAA--ATTGATGTTTA
* * * * * *
760901 G-AAATAAAGCCGAGGTTGGAGTATCCCTTTGAAAATAACGGGGTTGGAGTATCCCTTATTATAG
1 GAAAATAAA-ACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAG
** *
760965 AAAATCAATGTTTT
65 AAAATTGATGTTTA
* ** *
760979 GAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAATGGGGTTGGAGTAT-CCTCGATTGT-G
1 GAAAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCT-GATTATAG
761042 AAAAATTGATGCTTTA
65 -AAAATTGATG-TTTA
** * * * *
761058 G-AAATAAGGCTGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTATCCCCGATTGT-G
1 GAAAATAAAAC-GGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAG
** *
761121 AAAAATCAATATTTTA
65 -AAAATTGAT-GTTTA
* * * * * *
761137 G-AAATAAAGCCGAGGTTAGAGTATTCCTTCGAAAATAACGGGGTTGGAGTATCC
1 GAAAATAAA-ACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCC
761191 TCGATGAAAT
Statistics
Matches: 442, Mismatches: 63, Indels: 44
0.81 0.11 0.08
Matches are distributed among these distances:
76 1 0.00
77 7 0.02
78 126 0.29
79 295 0.67
80 8 0.02
81 3 0.01
82 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
GAAAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAGA
AAATTGATGTTTA
Found at i:760838 original size:157 final size:156
Alignment explanation
Indices: 760571--761190 Score: 607
Period size: 157 Copynumber: 3.9 Consensus size: 156
760561 TCGATTATGA
* *
760571 AAAATCAGTGTTCT-GAAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGAAG
1 AAAATCAGTGTTTTAG-AAATAAAA-CGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAG
*** * * * *
760635 TATCCCTGATTATAGAAAATTGGTGTTTCGAAAATAAAATCAGGGTTGGAGTATCCTCTCGAAAA
64 TATCCCTGATTATAGAAAATCAATGTTTAGAAAATAAAACCGGGGTTAGAGTATCCTCTCGAAAA
* *
760700 TAACAGGGTTGGAGTATCCCTTATTATAG
129 TAACAGGGTTGGAGTATCCCTGATTGT-G
* *
760729 AAAATCAGTGTTTT-GAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGT
1 AAAATCAGTGTTTTAG-AAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGT
* ** ** * *
760793 ATCCCTGATTGT-GAAAAATTGATGCTTTAG-AAATAAGGCCGGGGTTAGAGTATCCCCGCGAAA
65 ATCCCTGATTATAG-AAAATCAATG-TTTAGAAAATAAAACCGGGGTTAGAGTATCCTCTCGAAA
760856 ATAACAGGGTTGGAGTATCTCC-GATTGTG
128 ATAACAGGGTTGGAGTATC-CCTGATTGTG
* * * * * * *
760885 AGAAATCAATATTTTAGAAATAAAGCCGAGGTTGGAGTATCCCTTTGAAAATAACGGGGTTGGAG
1 A-AAATCAGTGTTTTAGAAATAAA-ACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAG
* * *
760950 TATCCCTTATTATAGAAAATCAATGTTTTGAAAATAAAA-CGGGGTTGGAGTAT-CTCCTCGAAA
64 TATCCCTGATTATAGAAAATCAATGTTTAGAAAATAAAACCGGGGTTAGAGTATCCT-CTCGAAA
**
761013 ATAATGGGGTTGGAGTAT-CCTCGATTGTG
128 ATAACAGGGTTGGAGTATCCCT-GATTGTG
* * ** * *
761042 AAAAAT-TGATGCTTTAGAAATAAGGCTGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGA
1 -AAAATCAG-TGTTTTAGAAATAAAAC-GGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGA
* * * * *
761106 GTATCCCCGATTGT-GAAAAATCAATATTTTAG-AAATAAAGCCGAGGTTAGAGTATTCCT-TCG
63 GTATCCCTGATTATAG-AAAATCAAT-GTTTAGAAAATAAAACCGGGGTTAGAGTA-TCCTCTCG
*
761168 AAAATAACGGGGTTGGAGTATCC
125 AAAATAACAGGGTTGGAGTATCC
761191 TCGATGAAAT
Statistics
Matches: 386, Mismatches: 56, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
155 2 0.01
156 6 0.02
157 244 0.63
158 129 0.33
159 3 0.01
160 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.28
Consensus pattern (156 bp):
AAAATCAGTGTTTTAGAAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTA
TCCCTGATTATAGAAAATCAATGTTTAGAAAATAAAACCGGGGTTAGAGTATCCTCTCGAAAATA
ACAGGGTTGGAGTATCCCTGATTGTG
Found at i:760956 original size:236 final size:234
Alignment explanation
Indices: 760596--761190 Score: 912
Period size: 236 Copynumber: 2.5 Consensus size: 234
760586 AAAATAAAAT
* * * * * *
760596 CGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGAAGTATCCCTGATTAT-AGAAA--ATTGG
1 CGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTATCCC-GATTGTGAGAAATCAAT-A
* ** *
760658 TGTTTCGAAAATAAAATC-AGGGTTGGAGTATCCTCTCGAAAATAACAGGGTTGGAGTATCCCTT
64 T-TTTAG-AAATAAAGCCGA-GGTTGGAGTATCCT-TCGAAAATAACGGGGTTGGAGTATCCCTT
*
760722 ATTATAGAAAATCAGTGTTTTGAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAACGGGGT
125 ATTATAGAAAATCAATGTTTTGAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAACGGGGT
760787 TGGAGTATCC-CTGATTGTGAAAAATTGATGCTTTAGAAATAAGGC
190 TGGAGTATCCTC-GATTGTGAAAAATTGATGCTTTAGAAATAAGGC
760832 CGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTATCTCCGATTGTGAGAAATCAATAT
1 CGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTATC-CCGATTGTGAGAAATCAATAT
*
760897 TTTAGAAATAAAGCCGAGGTTGGAGTATCCCTTTGAAAATAACGGGGTTGGAGTATCCCTTATTA
65 TTTAGAAATAAAGCCGAGGTTGGAGTAT-CCTTCGAAAATAACGGGGTTGGAGTATCCCTTATTA
*
760962 TAGAAAATCAATGTTTTGAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAATGGGGTTGGA
129 TAGAAAATCAATGTTTTGAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGA
761027 GTATCCTCGATTGTGAAAAATTGATGCTTTAGAAATAAGGC
194 GTATCCTCGATTGTGAAAAATTGATGCTTTAGAAATAAGGC
* *
761068 TGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATAT
1 CGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTAT-CCCGATTGTGAGAAATCAATAT
*
761133 TTTAGAAATAAAGCCGAGGTTAGAGTATTCCTTCGAAAATAACGGGGTTGGAGTATCC
65 TTTAGAAATAAAGCCGAGGTTGGAGTA-TCCTTCGAAAATAACGGGGTTGGAGTATCC
761191 TCGATGAAAT
Statistics
Matches: 333, Mismatches: 17, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
236 312 0.94
237 18 0.05
238 1 0.00
239 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (234 bp):
CGGGGTTAGAGTATCCCCGCGAAAATAACAGGGTTGGAGTATCCCGATTGTGAGAAATCAATATT
TTAGAAATAAAGCCGAGGTTGGAGTATCCTTCGAAAATAACGGGGTTGGAGTATCCCTTATTATA
GAAAATCAATGTTTTGAAAATAAAACGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGT
ATCCTCGATTGTGAAAAATTGATGCTTTAGAAATAAGGC
Found at i:761180 original size:107 final size:107
Alignment explanation
Indices: 761069--761267 Score: 292
Period size: 107 Copynumber: 1.9 Consensus size: 107
761059 AAATAAGGCT
761069 GGGGTTAGAGTATCCCCG-CGAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATAT
1 GGGGTTAGAGTATCCCCGACG-AAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATAT
*
761133 TTTAGAAATAAAGCCGAGGTTAGAGTATTCCTTCGAAAATAAC
65 TTTAGAAATAAAACCGAGGTTAGAGTATTCCTTCGAAAATAAC
* * * * *** *
761176 GGGGTTGGAGTATCCTCGATGAAATAACCGGGTTGGAGTATCCCCGATTGTGAAAAATGGGTGTT
1 GGGGTTAGAGTATCCCCGACGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATT
*
761241 TTAGAAATAAAACCGAGGTTGGAGTAT
66 TTAGAAATAAAACCGAGGTTAGAGTAT
761268 CCCTGAGATA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
107 80 0.99
108 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (107 bp):
GGGGTTAGAGTATCCCCGACGAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATT
TTAGAAATAAAACCGAGGTTAGAGTATTCCTTCGAAAATAAC
Found at i:761181 original size:28 final size:28
Alignment explanation
Indices: 761136--761216 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 28
761126 TCAATATTTT
*
761136 AGAAATAAAGCCGAGGTTAGAGTATTCCTTCG
1 AGAAAT-AA-CCG-GGTTGGAGTATTCC-TCG
*
761168 A-AAATAACGGGGTTGGAGTA-TCCTCG
1 AGAAATAACCGGGTTGGAGTATTCCTCG
761194 ATGAAATAACCGGGTTGGAGTAT
1 A-GAAATAACCGGGTTGGAGTAT
761217 CCCCGATTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
26 4 0.09
27 3 0.07
28 27 0.63
29 2 0.05
30 2 0.05
31 4 0.09
32 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (28 bp):
AGAAATAACCGGGTTGGAGTATTCCTCG
Found at i:761217 original size:28 final size:28
Alignment explanation
Indices: 761169--761223 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
761159 ATTCCTTCGA
* *
761169 AAATAACGGGGTTGGAGTATCCTCGATG
1 AAATAACCGGGTTGGAGTATCCCCGATG
761197 AAATAACCGGGTTGGAGTATCCCCGAT
1 AAATAACCGGGTTGGAGTATCCCCGAT
761224 TGTGAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (28 bp):
AAATAACCGGGTTGGAGTATCCCCGATG
Found at i:763988 original size:32 final size:31
Alignment explanation
Indices: 763916--764072 Score: 187
Period size: 32 Copynumber: 5.1 Consensus size: 31
763906 TTCAAATCTC
* *
763916 TTCTCAAAGCCCATGACTCAGTGGCAAT-CTC
1 TTCTCAAAGCCCACGACTCAGTGGC-ATCCTT
* *
763947 TTCTCAAAGTCCACGACTTAGTGGCATCCTT
1 TTCTCAAAGCCCACGACTCAGTGGCATCCTT
*
763978 TTCTTCAAAGTCCACGACTCAGTGGCAT--TT
1 TTC-TCAAAGCCCACGACTCAGTGGCATCCTT
764008 TGTCTCAAAGCCCACGACTCAGTGGCATCCTT
1 T-TCTCAAAGCCCACGACTCAGTGGCATCCTT
* *
764040 TTCTTCAAAGCCCACAACTCCGTGGCA-CCTT
1 TTC-TCAAAGCCCACGACTCAGTGGCATCCTT
764071 TT
1 TT
764073 TCTTTTTAAA
Statistics
Matches: 112, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
30 28 0.25
31 37 0.33
32 47 0.42
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (31 bp):
TTCTCAAAGCCCACGACTCAGTGGCATCCTT
Found at i:764032 original size:62 final size:62
Alignment explanation
Indices: 763919--764066 Score: 208
Period size: 62 Copynumber: 2.4 Consensus size: 62
763909 AAATCTCTTC
* * *
763919 TCAAAGCCCATGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTTAGTGGCATCCTTTTCT
1 TCAAAGCCCACGACTCAGTGGC-ATCTCTTCTCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* *
763982 TCAAAGTCCACGACTCAGTGGCAT-TTTGTCTCAAAGCCCACGACTCAGTGGCATCCTTTTCT
1 TCAAAGCCCACGACTCAGTGGCATCTCT-TCTCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* *
764044 TCAAAGCCCACAACTCCGTGGCA
1 TCAAAGCCCACGACTCAGTGGCA
764067 CCTTTTTCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
61 2 0.03
62 54 0.71
63 20 0.26
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (62 bp):
TCAAAGCCCACGACTCAGTGGCATCTCTTCTCAAAGCCCACGACTCAGTGGCATCCTTTTCT
Found at i:764089 original size:34 final size:34
Alignment explanation
Indices: 764014--764821 Score: 842
Period size: 34 Copynumber: 23.8 Consensus size: 34
764004 ATTTTGTCTC
* * *
764014 AAAGCCCACGACTCAGTGGCATCC-TTTTC--TTC
1 AAAGCCCACAACTCCGTGGCA-CCTTTTTCTTTTT
764046 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
764080 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* *
764116 -AAGTCCACAACTCCGTGGCACCTTGTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
764149 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* *
764186 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* * * *
764222 AAAGCCCACGACTCAGTGGCATCC--TTTC-CTTC
1 AAAGCCCACAACTCCGTGGCA-CCTTTTTCTTTTT
*
764254 AAAGCCCAAAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
** *
764288 AAAGCCCACAACTCCGTGGCATTGTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCA-CCTTTTT-CTTTTT
* *
764324 -AAGTCCACAACTCCGTGGCACCTTGTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
764357 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* * *
764394 AAAGCCCACAACTCTGTGTCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* *
764430 AAAGTCCACGAA-TCCGTGGCACC---TTCTTTTC
1 AAAGCCCAC-AACTCCGTGGCACCTTTTTCTTTTT
764461 AAAGCCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
764489 -AAGCCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
764516 -AAGTCCACAACTCCGTGGCACCTTGTTCTTTCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
764549 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* *
764586 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* *
764622 AAAGTCCACAACTCTGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
764656 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
764690 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
764727 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
764761 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* * *
764797 -AAGTCCACAACTTCGTGGCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTT
764822 CTCCCTTCCC
Statistics
Matches: 676, Mismatches: 64, Indels: 70
0.83 0.08 0.09
Matches are distributed among these distances:
27 48 0.07
28 3 0.00
29 1 0.00
30 2 0.00
31 27 0.04
32 47 0.07
33 18 0.03
34 208 0.31
35 102 0.15
36 93 0.14
37 127 0.19
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:764139 original size:69 final size:69
Alignment explanation
Indices: 764014--764821 Score: 943
Period size: 69 Copynumber: 11.9 Consensus size: 69
764004 ATTTTGTCTC
* * * **
764014 AAAGCCCACGACTCAGTGGCA-TCCTTTT--CTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
764076 TTTT
66 TTTT
* *
764080 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
764145 TTTT
66 TTTT
*
764149 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT--AAGCCCACAACTCCGTGGCAC-CTTTT
*
764214 TCCCTTTT
63 T-CTTTTT
* * * ** *
764222 AAAGCCCACGACTCAGTGGCA-TC-CTTT-CCTTCAAAGCCCAAAACTCCGTGGCACCTTTTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
764284 TTTT
66 TTTT
* * * *
764288 AAAGCCCACAACTCCGTGGCATTGTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
764353 TTTT
66 TTTT
* *
764357 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGTCACTCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT--AAGCCCACAACTCCGTGGCAC-CTTTT
*
764422 TCCCTTTT
63 T-CTTTTT
* * **
764430 AAAGTCCACGAA-TCCGTGGCAC-CTTCTT---TTCAAAGCCCACAACTCCGTGGCACC-----C
1 AAAGCCCAC-AACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTC
764485 -TTTT
65 TTTTT
* *
764489 -AAGCCCACAACTCCGTGGCA--------CCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
*
764545 TTCT
66 TTTT
*
764549 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT--AAGCCCACAACTCCGTGGCAC-CTTTT
*
764614 TCCCTTTT
63 T-CTTTTT
* * *
764622 AAAGTCCACAACTCTGTGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGCCCACAACTCCGTGGCACCTTTTTC
764685 TTTTT
65 TTTTT
764690 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT--AAGCCCACAACTCCGTGGCACCTTTTT
764755 CTTTTT
64 CTTTTT
* * *
764761 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTTCGTGGCATCTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTT
764822 CTCCCTTCCC
Statistics
Matches: 639, Mismatches: 62, Indels: 79
0.82 0.08 0.10
Matches are distributed among these distances:
54 23 0.04
57 2 0.00
58 16 0.03
59 5 0.01
60 4 0.01
61 20 0.03
66 44 0.07
67 32 0.05
68 47 0.07
69 181 0.28
70 30 0.05
71 134 0.21
72 28 0.04
73 71 0.11
74 2 0.00
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (69 bp):
AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCT
TTTT
Found at i:764372 original size:208 final size:208
Alignment explanation
Indices: 764014--764828 Score: 1251
Period size: 208 Copynumber: 4.0 Consensus size: 208
764004 ATTTTGTCTC
764014 AAAGCCCACGACTCAGTGGCATCCTTT-TCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
1 AAAGCCCACGACTCAGTGGCA-CCTTTCTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
764078 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTT
65 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTT
764143 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCAC
130 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCAC
764208 TCTTTTTCCCTTTT
195 TCTTTTTCCCTTTT
*
764222 AAAGCCCACGACTCAGTGGCATCCTTTC-CTTCAAAGCCCAAAACTCCGTGGCACCTTTTTCTTT
1 AAAGCCCACGACTCAGTGGCA-CCTTTCTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
* *
764286 TTAAAGCCCACAACTCCGTGGCATTGTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTT
65 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTT
*
764351 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGTCAC
130 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCAC
764416 TCTTTTTCCCTTTT
195 TCTTTTTCCCTTTT
* * * *
764430 AAAGTCCACGAATCCGTGGCACC-TTCTTTTCAAAGCCCACAACTCCGTGGCACC-----C-TTT
1 AAAGCCCACGACTCAGTGGCACCTTTCTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
764488 T-AAGCCCACAACTCCGTGGCA--------CCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTC
66 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTC
*
764544 TTTCTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCACT
131 TTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCACT
764609 CTTTTTCCCTTTT
196 CTTTTTCCCTTTT
* * * * *
764622 AAAGTCCACAACTCTGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 AAAGCCCACGACTCAGTGGCACC--TTTCTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
764687 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTT
64 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT--AAGTCCACAACTCCGTGGCACCTT
* *
764752 TTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT--AAGTCCACAACT-TCGTG
127 GTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCT-GTG
*
764814 GCA-TCTTTCTCCCTT
191 GCACTCTTTTTCCCTT
764829 CCCAAAGCCC
Statistics
Matches: 564, Mismatches: 20, Indels: 45
0.90 0.03 0.07
Matches are distributed among these distances:
192 131 0.23
195 30 0.05
200 21 0.04
201 8 0.01
202 21 0.04
206 3 0.01
207 27 0.05
208 221 0.39
209 12 0.02
210 24 0.04
212 66 0.12
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (208 bp):
AAAGCCCACGACTCAGTGGCACCTTTCTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTC
TTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCACT
CTTTTTCCCTTTT
Found at i:764739 original size:71 final size:71
Alignment explanation
Indices: 764520--764821 Score: 461
Period size: 71 Copynumber: 4.3 Consensus size: 71
764510 CCTTTTAAGT
* *
764520 CCACAACTCCGTGGCACCTTGTTCTTTCTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
764585 CAAAGC
66 CAAAGC
* * * *
764591 CCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCTGTGGCAC-CTTTTT--CTT
1 CCACAACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
*
764653 TTTAAAGC
64 TTCAAAGC
764661 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
764726 CAAAGC
66 CAAAGC
764732 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
*
764797 --AAGT
66 CAAAGC
* *
764801 CCACAACTTCGTGGCATCTTT
1 CCACAACTCCGTGGCACCTTT
764822 CTCCCTTCCC
Statistics
Matches: 211, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
68 25 0.12
69 34 0.16
70 26 0.12
71 91 0.43
72 11 0.05
73 24 0.11
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.35
Consensus pattern (71 bp):
CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
CAAAGC
Found at i:764869 original size:34 final size:35
Alignment explanation
Indices: 764826--764896 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 35
764816 ATCTTTCTCC
764826 CTTCCCAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTTCCCAAAGCCCACACAAGTCGGTGGCAACCCTT
764860 CTTCCCAAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCCCAAAGCCCACACAAGTCGGTGGCAACCCTT
764895 CT
1 CT
764897 AAGCCCAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 30 0.83
35 6 0.17
ACGTcount: A:0.25, C:0.39, G:0.17, T:0.18
Consensus pattern (35 bp):
CTTCCCAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:764875 original size:105 final size:104
Alignment explanation
Indices: 764520--764841 Score: 438
Period size: 105 Copynumber: 3.0 Consensus size: 104
764510 CCTTTTAAGT
*
764520 CCACAACTCCGTGGCACCTTGTTCTTTCTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 CCACAACTCCGTGGCACC-T-TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* *
764585 CAAAGCCCACAAC-TCTGTGGCACTCTTTTTCCCTTTTAAAGT
64 -AAAGCCCACAACTTC-GTGGCACTCTTTTTCCCTTTCAAAGC
* *
764627 CCACAACTCTGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
1 CCACAACTCCGTGGCACC--TTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
*
764690 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGC
64 AAAGCCCACAACTTCGTGGCACTCTTTTTCCC-TTTCAAAGC
764732 CCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 CCACAACTCCGTGGCACC--TTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * *
764797 -AAGTCCACAACTTCGTGGCA-TCTTTCTCCCTTCCCAAAGC
64 AAAGCCCACAACTTCGTGGCACTCTTTTTCCCTT-TCAAAGC
764837 CCACA
1 CCACA
764842 CAAGTCGGTG
Statistics
Matches: 197, Mismatches: 12, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
104 31 0.16
105 83 0.42
106 30 0.15
107 51 0.26
108 2 0.01
ACGTcount: A:0.20, C:0.35, G:0.11, T:0.34
Consensus pattern (104 bp):
CCACAACTCCGTGGCACCTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAA
AGCCCACAACTTCGTGGCACTCTTTTTCCCTTTCAAAGC
Found at i:764987 original size:21 final size:21
Alignment explanation
Indices: 764963--765030 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
764953 ATGTAGCTGG
764963 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* * *
764984 CCTTTAAGTC--CA-ATATCGCTGG
1 CCTTGAA-TCAGCACAT-TGGC--A
765006 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
765027 CCTT
1 CCTT
765031 TAAGTCCAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:765005 original size:43 final size:43
Alignment explanation
Indices: 764942--765166 Score: 306
Period size: 43 Copynumber: 5.1 Consensus size: 43
764932 GCACCTTCTT
764942 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* *
764985 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * **
765028 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
*
765075 ATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
765120 CTTTAAGTCTAATGTAGCTGGCCTTGAATCAACATATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
765163 CTTT
1 CTTT
765167 TCCATCTTTA
Statistics
Matches: 163, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
43 124 0.76
45 1 0.01
47 1 0.01
49 37 0.23
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:765006 original size:24 final size:24
Alignment explanation
Indices: 764979--765049 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
764969 ATCAGCACAT
764979 TGGCACCTTTAAGTCCAATATCGC
1 TGGCACCTTTAAGTCCAATATCGC
* ** **
765003 TGG--CCTTGAA-T-CAGCA-CAT
1 TGGCACCTTTAAGTCCAATATCGC
765022 TGGCACCTTTAAGTCCAATATCGC
1 TGGCACCTTTAAGTCCAATATCGC
765046 TGGC
1 TGGC
765050 CTTGAATCAG
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 7 0.22
22 7 0.22
23 3 0.09
24 8 0.25
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (24 bp):
TGGCACCTTTAAGTCCAATATCGC
Found at i:765009 original size:22 final size:22
Alignment explanation
Indices: 764984--765052 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
764974 CACATTGGCA
764984 CCTTTAAGTCCAATATCGCTGG
1 CCTTTAAGTCCAATATCGCTGG
* * *
765006 CCTTGAA-TCAGCACAT-TGGC--A
1 CCTTTAAGTC--CA-ATATCGCTGG
765027 CCTTTAAGTCCAATATCGCTGG
1 CCTTTAAGTCCAATATCGCTGG
765049 CCTT
1 CCTT
765053 GAATCAGCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.30
Consensus pattern (22 bp):
CCTTTAAGTCCAATATCGCTGG
Found at i:765081 original size:92 final size:91
Alignment explanation
Indices: 764942--765219 Score: 368
Period size: 92 Copynumber: 3.0 Consensus size: 91
764932 GCACCTTCTT
* * *
764942 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATATCG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCATTTCATCTTTAAGTCCAATGTAG
765002 CTGGCCTTGAATCAGCACATTGGCAC
66 CTGGCCTTGAATCAGCACATTGGCAC
* * *
765028 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCAT-TTCATCTTTAAGTCCAATGTA
*
765093 GCTAGCCTTGAATCAGCACATTGGCAC
65 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
765120 CTTTAAGTCTAATGTAGCTGGCCTTGAATCAACATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA---TTT-CATCTTTAAGTCCAAT
*
765185 GTAGCTGGCCTTGAATCAGCACATTGACATC
62 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
765216 CTTT
1 CTTT
765220 TTCTCATCTT
Statistics
Matches: 166, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
86 38 0.23
90 1 0.01
92 77 0.46
94 2 0.01
95 43 0.26
96 5 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (91 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCATTTCATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCAC
Found at i:765143 original size:135 final size:135
Alignment explanation
Indices: 764891--765166 Score: 444
Period size: 135 Copynumber: 2.0 Consensus size: 135
764881 CGGTGGCAAC
*
764891 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 CCTT-TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
* * *
764956 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACA
65 TAGCTAGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAACACA
765021 TTGGCA
130 TTGGCA
* * * *
765027 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* * *
765092 AGCTAGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATGTAGCTGGCCTTGAATCAACATAT
66 AGCTAGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAACACAT
765157 TGGCA
131 TGGCA
765162 CCTTT
1 CCTTT
765167 TCCATCTTTA
Statistics
Matches: 129, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
135 125 0.97
136 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (135 bp):
CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTAGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAACACAT
TGGCA
Found at i:765198 original size:52 final size:52
Alignment explanation
Indices: 765120--765273 Score: 175
Period size: 52 Copynumber: 2.9 Consensus size: 52
765110 ACATTGGCAC
765120 CTTTAAGTCTAATGTAGCTGGCCTTGAATCAACATATTGGCACCTTTTC-CAT
1 CTTTAAGTC-AATGTAGCTGGCCTTGAATCAACATATTGGCACCTTTTCTCAT
* * *
765172 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAG-TCAATGTAGCTGGCCTTGAATCAACATATTGGCA-CC-TTTTCTCAT
* * * * * *
765227 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTT
1 CTTTAAG-TCAATGTAGCTGGCCTTGAATCAACATATTGGCACCTTT
765274 ATCACTTTTC
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
52 36 0.42
53 7 0.08
54 6 0.07
55 36 0.42
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.36
Consensus pattern (52 bp):
CTTTAAGTCAATGTAGCTGGCCTTGAATCAACATATTGGCACCTTTTCTCAT
Found at i:765255 original size:55 final size:55
Alignment explanation
Indices: 765138--765462 Score: 199
Period size: 67 Copynumber: 5.5 Consensus size: 55
765128 CTAATGTAGC
* ** * * *
765138 TGGCCTTGAATCAACATATTGGCACC-TTTTC--CATCTTTAAGTTCAATGTAGC
1 TGGCCTTGAATCAACATATTGACACCTTTTTCATCATCTTTAAGCCCAATATCGT
* *
765190 TGGCCTTGAATCAGCACATTGACATCCTTTTTC-TCATCTTTAAGCCCAATATCGT
1 TGGCCTTGAATCAACATATTGACA-CCTTTTTCATCATCTTTAAGCCCAATATCGT
* * *
765245 TGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCATCTTTAAGTCCAATATT
1 TGGCCTTGAATCAACATATT-G-A-C---A-C-C-TTT-T--TCATCATCTTTAAGCCCAATATC
765310 GT
54 GT
* * **
765312 TGGCCTTGAATCAGCATATTGGCACCTTCATCATCATCTTTAAGCCCAATATCGT
1 TGGCCTTGAATCAACATATTGACACCTTTTTCATCATCTTTAAGCCCAATATCGT
* ** * *
765367 TGGCCATGAATCAATTTATTGGCATCTTTATCACTTTTCTCATCATCATCTTTAAGTCCAATATT
1 TGGCCTTGAATCAACATATT-G-A-C---A-C-C-TTT-T--TCATCATCTTTAAGCCCAATATC
765432 GT
54 GT
* *
765434 TGGCCTTGAATCAGCATATTGGCACCTTT
1 TGGCCTTGAATCAACATATTGACACCTTT
765463 ATCTTCGAGC
Statistics
Matches: 212, Mismatches: 34, Indels: 48
0.72 0.12 0.16
Matches are distributed among these distances:
52 21 0.10
53 2 0.01
54 5 0.02
55 72 0.34
56 2 0.01
57 1 0.00
58 7 0.03
59 2 0.01
60 2 0.01
61 6 0.03
62 2 0.01
63 4 0.02
64 5 0.02
66 4 0.02
67 77 0.36
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (55 bp):
TGGCCTTGAATCAACATATTGACACCTTTTTCATCATCTTTAAGCCCAATATCGT
Found at i:765331 original size:67 final size:67
Alignment explanation
Indices: 765223--765465 Score: 303
Period size: 67 Copynumber: 3.8 Consensus size: 67
765213 ATCCTTTTTC
765223 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
1 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
765288 CA
66 CA
* * * *
765290 TCATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGG---C---A-C-C---T-TCAT
1 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
765343 CA
66 CA
**
765345 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAATTTATTGGCATCTTTATCACTTTTCTCAT
1 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
765410 CA
66 CA
* * * * *
765412 TCATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCACCTTTATC
1 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATC
765466 TTCGAGCCTA
Statistics
Matches: 147, Mismatches: 17, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
55 44 0.30
56 1 0.01
58 1 0.01
59 1 0.01
60 1 0.01
61 2 0.01
62 1 0.01
63 1 0.01
64 1 0.01
66 1 0.01
67 93 0.63
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (67 bp):
TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
CA
Found at i:765387 original size:122 final size:121
Alignment explanation
Indices: 765169--765466 Score: 479
Period size: 122 Copynumber: 2.4 Consensus size: 121
765159 GCACCTTTTC
* * * * * * **
765169 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG
1 CATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCA-CCTTCATCTCATCTTTAAG
765234 CCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
65 CCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
765291 CATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCACCTTCATCATCATCTTTAAG
1 CATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCACCTTCATC-TCATCTTTAAG
**
765356 CCCAATATCGTTGGCCATGAATCAATTTATTGGCATCTTTATCACTTTTCTCATCAT
65 CCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
*
765413 CATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCACCTTTATCT
1 CATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCACCTTCATCT
765467 TCGAGCCTAA
Statistics
Matches: 164, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
121 7 0.04
122 157 0.96
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (121 bp):
CATCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCACCTTCATCTCATCTTTAAGC
CCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
Found at i:773631 original size:13 final size:13
Alignment explanation
Indices: 773613--773638 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
773603 CAATTTTTTG
773613 TGTATCGATACAT
1 TGTATCGATACAT
773626 TGTATCGATACAT
1 TGTATCGATACAT
773639 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:775166 original size:94 final size:94
Alignment explanation
Indices: 774495--775154 Score: 928
Period size: 94 Copynumber: 7.0 Consensus size: 94
774485 ATCTAAACTT
* *
774495 TCTCCTTTCA-CTTTTCAGTCTTCAAAGAGCAGGACGTTCTCCTTTTAAAGTCCACACAAGTTGG
1 TCTCCTTTCACCTTTT-AGTCCTCAAAGAGCAGGACG----CCTTTTAAAGCCCACACAAGTTGG
774559 TGGCACTTCCCAGTCCTCAAAAAGCAGGACGCTC
61 TGGCACTTCCCAGTCCTCAAAAAGCAGGACGCTC
*
774593 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCGGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
774658 CTTCCCAGTTCTCAAAAAGCAGGATGCTC
66 CTTCCCAGTCCTCAAAAAGCAGGACGCTC
* * * *
774687 TCTCCTTTCACCTTTTAGTCCTCAAAAAGTAGGACGTCTTTTAAAGCCCACACAAGTAGGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
774752 CTTCCTAGTCCTCAAAAAGCAAGACGCTC
66 CTTCCCAGTCCTCAAAAAGCAGGACGCTC
* * * *
774781 TCTCCTTTCACCTTTTAGTCCTTAAAAAGTAGGACGCCTTTTAAAGCCCACACAAGTAGGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
774846 CTTCCCAATCCTCAAAAAGCTGGACGCTA
66 CTTCCCAGTCCTCAAAAAGCAGGACGCTC
* * *
774875 TCTCCTTTCACCTTTTTGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCAACACAAATTGGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
774940 CTTCCCAGTCTTCAAAAAGTAGGACGCTC
66 CTTCCCAGTCCTCAAAAAGCAGGACGCTC
* * *
774969 TTTCCTTTCACCTTTTAGTCCTTAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
775034 CTTCCTAGTCCTCAAAGAGCAGGACGCTC
66 CTTCCCAGTCCTCAAAAAGCAGGACGCTC
* * * * * *
775063 TCTCCTTTTACCCTTTAGTCTTTAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
**
775128 CCTT-TTAGTCCTCAAAAAGCAGGACGC
66 -CTTCCCAGTCCTCAAAAAGCAGGACGC
775155 ATTTTCCTTT
Statistics
Matches: 508, Mismatches: 52, Indels: 8
0.89 0.09 0.01
Matches are distributed among these distances:
94 472 0.93
95 3 0.01
98 28 0.06
99 5 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (94 bp):
TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
CTTCCCAGTCCTCAAAAAGCAGGACGCTC
Found at i:775223 original size:62 final size:63
Alignment explanation
Indices: 775101--775596 Score: 622
Period size: 62 Copynumber: 8.1 Consensus size: 63
775091 GTAGGACGCC
* *
775101 TTTCAAAGCCCACACAAGTTGGTGGCACC-TTTTAGTCCTCAAAAAGCAGGACGCATTTTCCT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
* * * *
775163 TTT-AAAGCCCACACGAGCTGGTGTCACCTTTTTAGTCCTCAAAGTGCAGGACGCCTTTTCC-
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
* * * * *
775224 TTTCAAAGCCAACATAAGTTGGTGGCACCTTTCTAGTCCTCAAAGAGCAGGACACCTTTTTCT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
* * *
775287 TTTCAAAACCCACTCAAGCTGGTGGCA-CTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
* * * * *
775348 TTTCGAAGCCCACACAAGTTGGTTGCACATTTTTAGTCCTCAAAGAGTAGGACACCATTTT-CT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCC-TTTTCCT
* * * *
775411 TTTCAAAGCCCATATAAGTTGGTGGCACC-TCTTAGTCCTCAAAGAGCAGGACGCCTTTTTCT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
* * * * *
775473 TTTCAAAGCCCATACGAGTTGGTAGCACC-TTTTAGTCTTCAAAGAGCAGGATGCCTTTT-CT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
* *
775534 TTTCAAAGCCCACACGAGTTGGTGGCA-CTTTTTAGTCCTC--A-AGCAGGACACCTTTTCCT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
775593 TTTC
1 TTTC
775597 TTCTTTGCCC
Statistics
Matches: 375, Mismatches: 50, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
58 13 0.03
59 7 0.02
60 1 0.00
61 88 0.23
62 216 0.58
63 50 0.13
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (63 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCT
Found at i:775963 original size:42 final size:41
Alignment explanation
Indices: 775624--776000 Score: 192
Period size: 42 Copynumber: 8.9 Consensus size: 41
775614 TAGGATGCCT
* * *
775624 TTTCCTTTTCTCCTTTGCCCTCAAAAGAGCAGGGCACATTTCA
1 TTTCCTTTT-TCCTTTGTCCTC-AAAGAGCAGGACACATTTAA
* ** *
775667 TTTCCTTCTTTTCCTTTTTGTCCTCAAAGAGCATG--ATGTTT-T
1 TTTCC-T-TTTTCC--TTTGTCCTCAAAGAGCAGGACACATTTAA
* * * *
775709 TCTTCTTTTTTTCCTTTGTCCTTAAAGAGTAGGTCGTAC-TTT-A
1 T-TTC-CTTTTTCCTTTGTCCTCAAAGAGCAGGAC--ACATTTAA
** * * *
775752 TTTCCTTCTTTTCCCTTCTAGTTTTCAAACAGCAAGACGCACTTT-A
1 TTTCC-T-TTTT-CCTT-T-GTCCTCAAAGAGCAGGACACA-TTTAA
* * * *
775798 TTCTCATTTTTCCTTTGTCCTTAAAAAGCAGGACATATTTAA
1 TT-TCCTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTAA
* * * *
775840 TTTCCTTTTTTCCTTTATCCTTAAAAAGCAGGACATATTTAA
1 TTTCC-TTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTAA
* * * ** *
775882 TTTCCCTTTTTCCTTTGTCTTCAAAGGGCATGATGCATTTTA
1 TTT-CCTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTAA
* * *
775924 TTTCCTATTTTCCTTTGTCCTCAAGGAGCAGGACCCATTTTA
1 TTTCCT-TTTTCCTTTGTCCTCAAAGAGCAGGACACATTTAA
** *
775966 TTCTCC-TTTTCCTTAATCCTCAAAGAGTAGGACAC
1 TT-TCCTTTTTCCTTTGTCCTCAAAGAGCAGGACAC
776001 CGCTTTCTTT
Statistics
Matches: 260, Mismatches: 51, Indels: 48
0.72 0.14 0.13
Matches are distributed among these distances:
40 16 0.06
41 32 0.12
42 126 0.48
43 27 0.10
44 14 0.05
45 17 0.07
46 26 0.10
47 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.44
Consensus pattern (41 bp):
TTTCCTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTAA
Found at i:780235 original size:67 final size:67
Alignment explanation
Indices: 780156--780397 Score: 319
Period size: 67 Copynumber: 3.8 Consensus size: 67
780146 TAGGCTCGAA
*
780156 GATAAAGGTGCCAATATGTTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
1 GATAAAGATGCCAATATGTTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
780221 GT
66 GT
* * * *
780223 GATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAT--G--AA
1 GATAAAGATGCCAATATGTTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
780284 --
66 GT
*
780284 G-----G-TGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
1 GATAAAGATGCCAATATGTTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
780343 GT
66 GT
* * *
780345 GATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATG
1 GATAAAGATGCCAATATGTTGATTCAAGGCCAACAATATTGGACTTAAAGATG
780398 TGAAAAAGGA
Statistics
Matches: 149, Mismatches: 14, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
55 45 0.30
56 1 0.01
57 1 0.01
59 2 0.01
61 2 0.01
63 2 0.01
65 1 0.01
66 1 0.01
67 94 0.63
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (67 bp):
GATAAAGATGCCAATATGTTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
GT
Found at i:780317 original size:55 final size:54
Alignment explanation
Indices: 780221--780501 Score: 210
Period size: 55 Copynumber: 5.0 Consensus size: 54
780211 GATGAGAAAA
* * * *
780221 GTGATAAAGATGCCAATAT-ATTGATTCATGGCCAACGATATTGGGCTTAAAGAT
1 GTGATAAAGGTGCCAATATGA-TGATTCAAGGCCAACAATATTGGACTTAAAGAT
*
780275 GATGATGAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGAT
1 G-TGATAAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGAT
* * * *
780330 GATGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAG
1 G-TGAT----AAA--G-----G-TGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAG
780395 AT
53 AT
* * * * * * *
780397 GTGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACT-TTGAACTTAAAGAT
1 GTGATAAAGG-TGCCAATATGATGATTCAAGGCCAAC-AATATTGGACTTAAAGAT
* * *
780452 G-GA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GTGATAAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAG
780502 GTGCCAATGT
Statistics
Matches: 186, Mismatches: 25, Indels: 34
0.76 0.10 0.14
Matches are distributed among these distances:
51 1 0.01
52 35 0.19
53 5 0.03
54 3 0.02
55 88 0.47
56 2 0.01
59 2 0.01
60 1 0.01
61 1 0.01
62 3 0.02
66 4 0.02
67 41 0.22
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (54 bp):
GTGATAAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGAT
Found at i:780452 original size:122 final size:122
Alignment explanation
Indices: 780159--780431 Score: 467
Period size: 122 Copynumber: 2.2 Consensus size: 122
780149 GCTCGAAGAT
*
780159 AAAGGTGCCAATATGTTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
1 AAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
*
780224 ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAT
66 ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAA
*
780281 GAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
1 AAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
*
780346 ATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATG-TGAA
66 ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAA
* * *
780402 AAAGGATGTCAATGTGCTGATTCAAGGCCA
1 AAAGG-TGCCAATATGATGATTCAAGGCCA
780432 GCTACTTTGA
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
121 7 0.05
122 135 0.95
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (122 bp):
AAAGGTGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAA
Found at i:780516 original size:43 final size:43
Alignment explanation
Indices: 780455--780730 Score: 345
Period size: 43 Copynumber: 6.1 Consensus size: 43
780445 TAAAGATGGA
780455 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
780498 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
780541 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
780590 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
780633 AAAGGTGCCAATGTGCTTATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
780676 AAAGAAGAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
780725 AGAAGG
1 A-AAGG
780731 GTTGCCACCG
Statistics
Matches: 207, Mismatches: 14, Indels: 23
0.85 0.06 0.09
Matches are distributed among these distances:
43 118 0.57
44 9 0.04
45 1 0.00
46 2 0.01
47 1 0.00
48 4 0.02
49 72 0.35
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:780589 original size:92 final size:91
Alignment explanation
Indices: 780402--780725 Score: 388
Period size: 92 Copynumber: 3.5 Consensus size: 91
780392 AAGATGTGAA
* * *
780402 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACTTTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AA-GTGCCAAT
780467 ATGCTGATTCAAGGCCAGCTATATTGGACTT
61 ATGCTGATTCAAGGCCAGCTATATTGGACTT
780498 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAG-TGCCAATATGC
*
780563 TGATTCAAGGCCAGCGATATTGGACTT
65 TGATTCAAGGCCAGCTATATTGGACTT
* * *
780590 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--GTGCCAATGTGCT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGTGCCAATATGCT
* *
780650 TATTCAAGGCCAGCTACATTGGACTT
66 GATTCAAGGCCAGCTATATTGGACTT
* * * *
780676 AAAGAAGAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 -----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
780726 GAAGGGTTGC
Statistics
Matches: 206, Mismatches: 14, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
86 34 0.17
87 1 0.00
89 1 0.00
90 1 0.00
91 4 0.02
92 118 0.57
94 1 0.00
95 41 0.20
96 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (91 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGTGCCAATATGCT
GATTCAAGGCCAGCTATATTGGACTT
Found at i:780594 original size:22 final size:22
Alignment explanation
Indices: 780569--780637 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
780559 ATGCTGATTC
780569 AAGGCCAGCGATATTGGACTTA
1 AAGGCCAGCGATATTGGACTTA
* * *
780591 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCGATAT-TG--GACTTA
780612 AAGGCCAGCGATATTGGACTTA
1 AAGGCCAGCGATATTGGACTTA
780634 AAGG
1 AAGG
780638 TGCCAATGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (22 bp):
AAGGCCAGCGATATTGGACTTA
Found at i:780642 original size:24 final size:24
Alignment explanation
Indices: 780572--780642 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
780562 CTGATTCAAG
780572 GCCAGCGATATTGGACTTAAAGGT
1 GCCAGCGATATTGGACTTAAAGGT
** ** *
780596 GCCAATG-TGCT-GA-TTCAA-G-
1 GCCAGCGATATTGGACTTAAAGGT
780615 GCCAGCGATATTGGACTTAAAGGT
1 GCCAGCGATATTGGACTTAAAGGT
780639 GCCA
1 GCCA
780643 ATGTGCTTAT
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 3 0.09
21 6 0.19
22 6 0.19
23 3 0.09
24 9 0.28
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (24 bp):
GCCAGCGATATTGGACTTAAAGGT
Found at i:780697 original size:135 final size:135
Alignment explanation
Indices: 780455--780730 Score: 471
Period size: 135 Copynumber: 2.0 Consensus size: 135
780445 TAAAGATGGA
*
780455 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTC
*
780520 AAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTG
66 AAGGCCAGCTACATTGGACTTAAAGAAGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTG
780585 GACTT
131 GACTT
* *
780590 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTTATTC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTC
* * *
780655 AAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTG
66 AAGGCCAGCTACATTGGACTTAAAGAAGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTG
*
780720 GGCTT
131 GACTT
780725 AGAAGG
1 A-AAGG
780731 GTTGCCACCG
Statistics
Matches: 132, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
135 128 0.97
136 4 0.03
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (135 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTC
AAGGCCAGCTACATTGGACTTAAAGAAGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTG
GACTT
Found at i:780770 original size:34 final size:34
Alignment explanation
Indices: 780730--780794 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
780720 GGCTTAGAAG
780730 GGTTGCCACCGACTTGTGTGGGCTTTGGGAAAAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGGAAAAA
780764 GGTTGCCACCGACTTGTGTGGGCTTTGGGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGGAA
780795 GGGAGAGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.28
Consensus pattern (34 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGGAAAAA
Found at i:780886 original size:34 final size:34
Alignment explanation
Indices: 780805--781575 Score: 814
Period size: 34 Copynumber: 22.6 Consensus size: 34
780795 GGGAGAGAGA
* * *
780805 TGCCACGAAGTTGTGGAC-TTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-G
780840 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* *
780874 TGCCACGAAGTTGTGGGCTTTGAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAG-G
780911 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
780945 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* * *
780979 TGCCACAGAGTTGTGGACTTTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-G
** *
781015 TGCCATAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAG-G
* *
781052 TGCCACGGAGTTGTGGGCTTTAGAAAGAACAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* *
781086 TGCCACAGAGTTGTGGAC-TT-AAAAG-----GG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
781113 TGCCACGGAGTTGTGGGC-TT-AAAAG-----GG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
*
781140 TGCCACGGAGTTGTGGGCTTTGAAAAG---AAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* * *
781171 TGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-G
* *
781207 TGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAG-G
*
781244 TGCCACGGAGTTGTGGGCTTTAAAAAGAACAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* *
781278 TGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-G
*
781313 TGCCACGGAGTTGTGGTCTTTAAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* * *
781347 TACCACGGAGTTTTGGGCTTT--GAAG-AAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* * * *
781378 ATGCCACTGAGTCGTGGGCTTTAAAAGGGAAAAGGAG
1 -TGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-G
* * *
781415 TGCCACAGAGTCGTGGGCTTTGAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAG-G
*
781452 TGCCACGGAGTTGTGGGCTTTAAAAAGAACAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
* *
781486 TGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-G
781521 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
781555 TGCCACGGAGTTGTGGGCTTT
1 TGCCACGGAGTTGTGGGCTTT
781576 GAAGAAAAGG
Statistics
Matches: 647, Mismatches: 59, Indels: 61
0.84 0.08 0.08
Matches are distributed among these distances:
27 45 0.07
28 2 0.00
29 5 0.01
31 30 0.05
32 25 0.04
33 14 0.02
34 186 0.29
35 113 0.17
36 103 0.16
37 124 0.19
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (34 bp):
TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG
Found at i:781123 original size:27 final size:28
Alignment explanation
Indices: 781045--781198 Score: 159
Period size: 27 Copynumber: 5.2 Consensus size: 28
781035 TGAAAAGGGA
* *
781045 AAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
*
781073 AGAAAGAACAAGGTGCCACAGAGTTGTGGAC-TT
1 A-AAAG-----GGTGCCACGGAGTTGTGGACTTT
*
781106 AAAAGGGTGCCACGGAGTTGTGGGC-TT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
*
781133 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
*
781161 GAAAAGAAGGTGCCACGGAGTCGTGGACTTT
1 -AAAAG--GGTGCCACGGAGTTGTGGACTTT
781192 AAAAGGG
1 AAAAGGG
781199 AAAAAGAGTG
Statistics
Matches: 109, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
27 45 0.41
28 5 0.05
29 9 0.08
30 5 0.05
31 21 0.19
32 4 0.04
33 3 0.03
34 17 0.16
ACGTcount: A:0.29, C:0.14, G:0.36, T:0.21
Consensus pattern (28 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTT
Found at i:781317 original size:69 final size:69
Alignment explanation
Indices: 781133--781574 Score: 547
Period size: 69 Copynumber: 6.4 Consensus size: 69
781123 TTGTGGGCTT
* ** * * *
781133 AAAAGGGTGCCACGGAGTTGTGGGCTTTGAA---AAGAAG-GTGCCACGGAGTCGTGGACTTTAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
*
781194 AAGGG
66 AA-AG
*
781199 AAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAAG-GTGCCACGGAGTTGTGGGC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
781264 TAAAAAG
63 TAAAAAG
* * *
781271 AACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGTCTTTAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
781336 AAAG
66 AAAG
* * ** * * *
781340 AAAAAGGTACCACGGAGTTTTGGGCTTTGAA--GAAAAGGA-TGCCACTGAGTCGTGGGCTTTAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
*
781402 AAGGG
66 AA-AG
* * *
781407 AAAAGGAGTGCCACAGAGTCGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAAG-GTGCCACGGAGTTGTGGGC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
781472 TAAAAAG
63 TAAAAAG
* *
781479 AACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
781544 AAAG
66 AAAG
781548 AAAAAGGTGCCACGGAGTTGTGGGCTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTT
781575 TGAAGAAAAG
Statistics
Matches: 321, Mismatches: 41, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
66 27 0.08
67 31 0.10
68 17 0.05
69 137 0.43
70 6 0.02
71 33 0.10
72 23 0.07
73 47 0.15
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (69 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
AAAG
Found at i:781499 original size:208 final size:207
Alignment explanation
Indices: 780800--781607 Score: 1222
Period size: 208 Copynumber: 3.9 Consensus size: 207
780790 GGGAAGGGAG
*
780800 AGAGATGCCAC-GAAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
1 AGAG-TGCCACAG-AGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
* * *
780862 AAAAGAAAAAGGTGCCACGAAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGG
64 AAAAGAACAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGG
* * *
780927 GCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTG
127 GCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT--GAAG-AAAAGGTGCCACTGAGTCG
780992 TGGACTTTAAAAGGGAAAA
189 TGGACTTTAAAAGGGAAAA
* *
781011 AGAGTGCCATAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAGA
1 AGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
*
781076 AAGAACAAGGTGCCACAGAGTTGTGGACTTAAAA--G-----G-GTGCCACGGAGTTGTGGGC-T
66 AAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
*
781132 T-AAAAG-----GGTGCCACGGAGTTGTGGGCTTTGAA-AAGAAGGTGCCACGGAGTCGTGGACT
131 TAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAA-AAGGTGCCACTGAGTCGTGGACT
781190 TTAAAAGGGAAAA
195 TTAAAAGGGAAAA
781203 AGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
*
781268 AAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGTCTT
66 AAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* * *
781333 TAAAAAGAAAAAGGTACCACGGAGTTTTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGGCT
131 TAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGG-TGCCACTGAGTCGTGGACT
781398 TTAAAAGGGAAAA
195 TTAAAAGGGAAAA
* *
781411 GGAGTGCCACAGAGTCGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
781476 AAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
66 AAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* *
781541 TAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCATGGGCT
131 TAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGG-TGCCACTGAGTCGTGGACT
781606 TT
195 TT
781608 GAGACAAAAT
Statistics
Matches: 552, Mismatches: 24, Indels: 45
0.89 0.04 0.07
Matches are distributed among these distances:
191 2 0.00
192 130 0.24
193 2 0.00
194 1 0.00
195 23 0.04
199 1 0.00
200 23 0.04
201 4 0.01
202 24 0.04
203 1 0.00
207 28 0.05
208 224 0.41
210 18 0.03
211 9 0.02
212 62 0.11
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (207 bp):
AGAGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
AAGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
TAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGGTGCCACTGAGTCGTGGACTT
TAAAAGGGAAAA
Found at i:781622 original size:30 final size:30
Alignment explanation
Indices: 781549--781679 Score: 111
Period size: 32 Copynumber: 4.2 Consensus size: 30
781539 TTTAAAAAGA
* * **
781549 AAAAGGTGCCACGGAGTTGTGGGCTTTGAAG
1 AAAAGATGCCACTGAGTCATGGGCTTTG-AG
781580 AAAAGGATGCCACTGAGTCATGGGCTTTGAG
1 AAAA-GATGCCACTGAGTCATGGGCTTTGAG
* *
781611 ACAAA-ATGCCACTGAGTCGTGGACTTTGAAG
1 A-AAAGATGCCACTGAGTCATGGGCTTTG-AG
* * * *
781642 AAAAGGATTCTACTGAGTCGTGGACTTTGAG
1 AAAA-GATGCCACTGAGTCATGGGCTTTGAG
*
781673 AAGAGAT
1 AAAAGAT
781680 TTGAAGAATT
Statistics
Matches: 86, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
30 27 0.31
31 15 0.17
32 44 0.51
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (30 bp):
AAAAGATGCCACTGAGTCATGGGCTTTGAG
Found at i:781642 original size:62 final size:62
Alignment explanation
Indices: 781555--781673 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
781545 AAGAAAAAGG
* * *
781555 TGCCACGGAGTTGTGGGCTTTGAAGAAAAGGATGCCACTGAGTCATGGGCTTTGAGACAAAA
1 TGCCACGGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTTTGAGACAAAA
* * * *
781617 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATTCTACTGAGTCGTGGACTTTGAGA
1 TGCCACGGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTTTGAGA
781674 AGAGATTTGA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (62 bp):
TGCCACGGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCATGGACTTTGAGACAAAA
Found at i:782641 original size:16 final size:16
Alignment explanation
Indices: 782617--782648 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
782607 TTTTTCCTCT
*
782617 TTTTTTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
782633 TTTTGTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
782649 GAAAATAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.84
Consensus pattern (16 bp):
TTTTGTTTCTTTTTTG
Found at i:801816 original size:28 final size:28
Alignment explanation
Indices: 801735--801816 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
801725 TTTTGGAGAT
*
801735 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
801763 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
801791 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
801817 TGTGAAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:801868 original size:51 final size:50
Alignment explanation
Indices: 801799--801968 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 50
801789 GAAATAACGA
* *
801799 GGTTGGAGTATCCTCGATTGTGAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * *
801850 AATTGGAGTATCCCCGATTAAAG-GAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT---GTGA-AAATTGGTATTTTGAAAATAAAATCGG
* * *
801903 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTGTG-AAAATTGGTATTTTGAAAATAAAATCGG
801954 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
801969 TCAGAAATAA
Statistics
Matches: 98, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
51 54 0.55
52 1 0.01
53 34 0.35
54 9 0.09
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:801985 original size:28 final size:28
Alignment explanation
Indices: 801951--802023 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
801941 AAAATAAAGT
801951 CGGGGTTGGAGTATCCCCTC-AGAAATAA
1 CGGGGTTGGAGTATCCCCTCGAG-AATAA
*
801979 CGGGGTTGGAGTAT--CCTCGATGATTAA
1 CGGGGTTGGAGTATCCCCTCGA-GAATAA
*
802006 CGGGGTTGGAGTGTCCCC
1 CGGGGTTGGAGTATCCCC
802024 GATTGTGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 4 0.10
27 18 0.46
28 15 0.38
29 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGAGAATAA
Found at i:804509 original size:13 final size:13
Alignment explanation
Indices: 804491--804516 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
804481 ACAAAGATCC
804491 ATGTATCGATACA
1 ATGTATCGATACA
804504 ATGTATCGATACA
1 ATGTATCGATACA
804517 CAAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:804580 original size:19 final size:18
Alignment explanation
Indices: 804556--804623 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
804546 CAGTAGCTAA
804556 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
804575 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
804590 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
804607 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
804624 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:804596 original size:13 final size:13
Alignment explanation
Indices: 804578--804602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
804568 ACAATACTTA
804578 TGTATCGATACAT
1 TGTATCGATACAT
804591 TGTATCGATACA
1 TGTATCGATACA
804603 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:804600 original size:32 final size:32
Alignment explanation
Indices: 804559--804621 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
804549 TAGCTAATTA
*
804559 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
804591 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
804622 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:804703 original size:21 final size:21
Alignment explanation
Indices: 804679--804735 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
804669 CATTTGTAGG
804679 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
804700 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
804721 ATGTATCGATACATT
1 ATGTATCGATACATT
804736 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:804766 original size:20 final size:20
Alignment explanation
Indices: 804738--804775 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
804728 GATACATTTA
*
804738 AATTTTTTTTTTTTTTTTTC
1 AATTATTTTTTTTTTTTTTC
804758 AATTATTTTTTTTTTTTT
1 AATTATTTTTTTTTTTTT
804776 CAAACACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (20 bp):
AATTATTTTTTTTTTTTTTC
Found at i:805455 original size:55 final size:54
Alignment explanation
Indices: 805371--805992 Score: 883
Period size: 55 Copynumber: 11.3 Consensus size: 54
805361 ATAAATTGTA
* * * * *
805371 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
805426 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
805481 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
805536 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
805591 TCCTGCTCTTTGAGGACTGGAAAATGCCAACAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
805646 TCCTGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGATG
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
805701 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
805756 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
805811 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
805866 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
805921 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT-AAGAGGTGG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGT-G
805977 TCCTGCTCCTTTGAGG
1 TCCTGCT-CTTTGAGG
805993 GTTTCCTCCC
Statistics
Matches: 524, Mismatches: 28, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
54 21 0.04
55 473 0.90
56 23 0.04
57 7 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:806179 original size:13 final size:13
Alignment explanation
Indices: 806161--806380 Score: 74
Period size: 13 Copynumber: 17.4 Consensus size: 13
806151 TGGGGGTTTG
806161 GGGGGTGGGGTGT
1 GGGGGTGGGGTGT
806174 GGGGGTGGGGTG-
1 GGGGGTGGGGTGT
* *
806186 GGGGTTTGGG-G-
1 GGGGGTGGGGTGT
* *
806197 GGGGGTTGGTTG-
1 GGGGGTGGGGTGT
*
806209 GGTGGGTTGGGGGGT
1 GG-GGG-TGGGGTGT
*** *
806224 GGGGGTTCCGTTT
1 GGGGGTGGGGTGT
806237 GGGGGTTGGGG-G-
1 GGGGG-TGGGGTGT
*
806249 GGGGG-GGTGTGT
1 GGGGGTGGGGTGT
*
806261 GGTGG-GGGGTG-
1 GGGGGTGGGGTGT
*** *
806272 GGGGGTGTTTTGC
1 GGGGGTGGGGTGT
*
806285 GGGGGTGGGGGGT
1 GGGGGTGGGGTGT
*
806298 GGGGGGGGTTGGTGT
1 GGGGGTGG--GGTGT
806313 GGGTGGTGGGGT-T
1 GGG-GGTGGGGTGT
806326 GGGTGGTGTGGGTGT
1 GGG-GGTG-GGGTGT
*
806341 -GGTG-GGGGTG-
1 GGGGGTGGGGTGT
*
806351 GGTGGGTGTGGTG-
1 GG-GGGTGGGGTGT
*
806364 GGGGG-GGGTTGT
1 GGGGGTGGGGTGT
806376 GGGGG
1 GGGGG
806381 GGTTGCGGGT
Statistics
Matches: 153, Mismatches: 36, Indels: 37
0.68 0.16 0.16
Matches are distributed among these distances:
10 3 0.02
11 24 0.16
12 39 0.25
13 55 0.36
14 18 0.12
15 10 0.07
16 4 0.03
ACGTcount: A:0.00, C:0.01, G:0.73, T:0.26
Consensus pattern (13 bp):
GGGGGTGGGGTGT
Found at i:806185 original size:18 final size:18
Alignment explanation
Indices: 806160--806372 Score: 75
Period size: 19 Copynumber: 11.4 Consensus size: 18
806150 GTGGGGGTTT
806160 GGGGGGT-GGGGTGTGGG
1 GGGGGGTGGGGGTGTGGG
*
806177 GGTGGGGTGGGGGTTTGGG
1 GG-GGGGTGGGGGTGTGGG
*
806196 GGGGGGT--TGGT-T-GG
1 GGGGGGTGGGGGTGTGGG
* *
806210 GTGGGTTGGGGG-GTGGG
1 GGGGGGTGGGGGTGTGGG
* **
806227 GGTTCCGTTTGGGGGT-TGGG
1 GG---GGGGTGGGGGTGTGGG
* *
806247 GGGGGG-GGGTGTGTGGT
1 GGGGGGTGGGGGTGTGGG
**
806264 GGGGGGTGGGGGGTGTTTTG
1 GGGGGGT-GGGGGTG-TGGG
*
806284 CGGGGGTGGGGG-GTGGGG
1 GGGGGGTGGGGGTGT-GGG
*
806302 GGGGTTGGTGTGGGTGGTGGG
1 GGGG--GGTGGGGGT-GTGGG
806323 GTTGGGTGGTGTGGGTGTGGTGGG
1 G--GGG-GGTG-GGG-GT-GTGGG
* *
806347 GGTGGGTGGGTGTGGTGGG
1 GGGGGGTGGGGGT-GTGGG
806366 GGGGGGT
1 GGGGGGT
806373 TGTGGGGGGG
Statistics
Matches: 147, Mismatches: 26, Indels: 44
0.68 0.12 0.20
Matches are distributed among these distances:
14 7 0.05
15 1 0.01
16 11 0.07
17 16 0.11
18 15 0.10
19 36 0.24
20 30 0.20
21 8 0.05
22 9 0.06
23 5 0.03
24 9 0.06
ACGTcount: A:0.00, C:0.01, G:0.73, T:0.26
Consensus pattern (18 bp):
GGGGGGTGGGGGTGTGGG
Found at i:806288 original size:21 final size:21
Alignment explanation
Indices: 806244--806298 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
806234 TTTGGGGGTT
*
806244 GGGGGG-GGGGGGTGTGTGGT
1 GGGGGGTGGGGGGTGTGTGGC
* *
806264 GGGGGGTGGGGGGTGTTTTGC
1 GGGGGGTGGGGGGTGTGTGGC
806285 -GGGGGTGGGGGGTG
1 GGGGGGTGGGGGGTG
806299 GGGGGGGTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 20 0.65
21 11 0.35
ACGTcount: A:0.00, C:0.02, G:0.76, T:0.22
Consensus pattern (21 bp):
GGGGGGTGGGGGGTGTGTGGC
Found at i:806305 original size:9 final size:9
Alignment explanation
Indices: 806291--806370 Score: 52
Period size: 9 Copynumber: 8.7 Consensus size: 9
806281 TTGCGGGGGT
806291 GGGGGGTGG
1 GGGGGGTGG
806300 GGGGGGTTGG
1 GGGGGG-TGG
* *
806310 TGTGGGTGG
1 GGGGGGTGG
* *
806319 TGGGGTTGG
1 GGGGGGTGG
* *
806328 GTGGTGTGG
1 GGGGGGTGG
* *
806337 GTGTGGTGG
1 GGGGGGTGG
806346 GGGTGGGTGG
1 GGG-GGGTGG
* *
806356 GTGTGGTGG
1 GGGGGGTGG
806365 GGGGGG
1 GGGGGG
806371 GTTGTGGGGG
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
9 39 0.74
10 14 0.26
ACGTcount: A:0.00, C:0.00, G:0.75, T:0.25
Consensus pattern (9 bp):
GGGGGGTGG
Found at i:806323 original size:27 final size:26
Alignment explanation
Indices: 806159--806385 Score: 106
Period size: 27 Copynumber: 8.7 Consensus size: 26
806149 AGTGGGGGTT
806159 TGGGGGGTGGGGTGTGGG--GGTG-GGG
1 TGGGGGGTGGGG-G-GGGTTGGTGTGGG
*
806184 TGGGGGTTTGGGGGGGGGTTGGT-TGGG
1 TGGGGG-GT-GGGGGGGGTTGGTGTGGG
* *
806211 TGGGTTGGG-GGGTGGGGGTTCCGTTTGGG
1 TGGG--GGGTGGG-GGGGGTT-GGTGTGGG
806240 -GGTTGGGG-GGGGGGGG-T-GTGT-GG
1 TGG--GGGGTGGGGGGGGTTGGTGTGGG
* * * *
806263 TGGGGGGTGGGGGGTGTTTTGCGGGGG
1 TGGGGGGTGGGGGG-GGTTGGTGTGGG
806290 TGGGGGGTGGGGGGGGTTGGTGTGGG
1 TGGGGGGTGGGGGGGGTTGGTGTGGG
* * *
806316 TGGTGGGGTTGGGTGGTGTGGGTGT-GG
1 TGG-GGGG-TGGGGGGGGTTGGTGTGGG
*
806343 T-GGGGGT-GGGTGGGTGTGGTG-GGG
1 TGGGGGGTGGGGGGGGT-TGGTGTGGG
*
806367 -GGGGGTTGTGGGGGGGTTG
1 TGGGGGGTG-GGGGGGGTTG
806386 CGGGTTGGGT
Statistics
Matches: 157, Mismatches: 20, Indels: 50
0.69 0.09 0.22
Matches are distributed among these distances:
22 4 0.03
23 13 0.08
24 18 0.11
25 16 0.10
26 27 0.17
27 49 0.31
28 23 0.15
29 6 0.04
30 1 0.01
ACGTcount: A:0.00, C:0.01, G:0.72, T:0.26
Consensus pattern (26 bp):
TGGGGGGTGGGGGGGGTTGGTGTGGG
Found at i:806323 original size:28 final size:28
Alignment explanation
Indices: 806236--806356 Score: 81
Period size: 28 Copynumber: 4.4 Consensus size: 28
806226 GGGTTCCGTT
* *
806236 TGGGGGTTGGGGGGGG--GGGGTGTGTGG
1 TGGGGG-TGGGGGGGGTTGGTGTGGGTGG
* * *
806263 TGGGGGGTGGGGGGTGTT-TTGCGGG-GG
1 T-GGGGGTGGGGGGGGTTGGTGTGGGTGG
806290 TGGGGGGTGGGGGGGGTTGGTGTGGGTGG
1 T-GGGGGTGGGGGGGGTTGGTGTGGGTGG
* * * *
806319 TGGGGTTGGGTGGTGTGGGTGT-GGTGG
1 TGGGGGTGGGGGGGGTTGGTGTGGGTGG
*
806346 GGGTGGGTGGG
1 TGG-GGGTGGG
806357 TGTGGTGGGG
Statistics
Matches: 74, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
27 35 0.47
28 36 0.49
29 3 0.04
ACGTcount: A:0.00, C:0.01, G:0.74, T:0.26
Consensus pattern (28 bp):
TGGGGGTGGGGGGGGTTGGTGTGGGTGG
Done.