Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold990
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49787
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Found at i:4821 original size:20 final size:20
Alignment explanation
Indices: 4796--4849 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
4786 CTACCACTGT
*
4796 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
4816 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
4836 TTGTATCGATACAT
1 TTGTATCGATACAT
4850 TGCTTCTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:6479 original size:475 final size:473
Alignment explanation
Indices: 5587--7493 Score: 1986
Period size: 475 Copynumber: 4.0 Consensus size: 473
5577 TTGAGCTTTC
* * * *
5587 AAATAAGACAAGGATCGATTCTCATCACAATCTCCATTATTTTCAAGATTGGAAACCTAAAACAC
1 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACAC
* * * *
5652 ATTCCTTTCATTAGGATACATGACA-CGATGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
66 ATTCCCTTCATTATGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
* * *
5716 TTTTTTGATAGAATCAAAGCTTTCTCTTAAATAAGA-AACACATGGATACTCATACTAATCTCCA
131 GTTTTTGATAGAATCAAAGTTTTCTCTTAAATAAGACAA-ACATGAATACTCATACTAATC-CCA
* * * * * * ** *
5780 TTTTTTTTAGGATTAGGCACCATAATCATAGTCTTCTCATAAGGATACACGATAATGATGTTTTT
194 TTCTTTTCAAGATTAGGCAACATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTG
* * * * * *
5845 GTTTCACAAGAAAAGCTTTCTTCCTACCAATTTTTGCAATGTCTATGTTTGTGCCTCGAATGAGC
259 GTTTCACAAGAAAAGCTTTCTTCC-ACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAAAGAGA
* * * * *** * ****
5910 CAAACACAGATTCTGGTAAT-AGTCTT-TATTCATTTTGTG-ATTTGGTTGTATAAACATAGAAA
323 CAAACATAGATTCTAGTAATGA-TCTTCT-TTCATTTTATGTATTAGGCACTATAAACACATTCT
* * *
5972 CCTCATTAGGATAAATGATACTAATAATTTTCTTTTACATGGAAATCTTCTCTTTGCCCTATTTT
386 CCTTATTAGGATAAATGATACTAATGATTTTCTTTTA-ATGGAAATCTTTTCTTTGCCCTATTTT
*
6037 CTTTAAAATCAAAGTTCATCCATT
450 CCTTAAAATCAAAGTTCATCCATT
* * * *
6061 AAATAAGACAAGCATCGACTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAATAT
1 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACAC
* * * * *
6126 ATTTCTTTCATTATGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAACTTTTCTTTCCATC
66 ATTCCCTTCATTATGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
*
6191 GTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-ATGAATACTCATACTAATCACCA
131 GTTTTTGATAGAATCAAAGTTT-TCTCTTAAATAAGACAAACATGAATACTCATACTAATC-CCA
*
6255 TTGTTTTCAAGATTAGGCAACATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTG
194 TTCTTTTCAAGATTAGGCAACATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTG
* * * * * *
6320 GTTTC-CTAAGAAAGGGTTT-TTCCCCCAATTTTTGCAATGTCTAAGCTT-GTGCTTCAAATGAG
259 GTTTCAC-AAGAAAAGCTTTCTTCCACCAATTTTTGCAAAGTCTAAG-TTCGTGCCTCAAAAGAG
* * * *
6382 ACAAACATGGATTCTAGTAATGCTCTTCTTTTATTTTATGATTATTAGGCACTATAAA-ACACTC
322 ACAAACATAGATTCTAGTAATGATCTTCTTTCATTTTATG--TATTAGGCACTATAAACACATTC
* * * * *
6446 TCCTTATTAGGATACATGATATTGATGATTTTCTTTTTAATGGAAGTCTTTTCTTTGCCATATTT
385 TCCTTATTAGGATAAATGATACTAATGATTTTC-TTTTAATGGAAATCTTTTCTTTGCCCTATTT
*
6511 TCCTTAAAATCAAAGTTAATCTC-TT
449 TCCTTAAAATCAAAGTTCATC-CATT
* * * * * * * ** * *
6536 AAAAAAAACAAGCTTAGATTCTTATAACGGTCTCCATTATTTTCAAGATTAGGATTCGAAAGCAC
1 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACAC
* * ** *
6601 ATTCCCTTCATTACGATACATGACATTGATAG-TTTTGTGTCGTAAGAAAAGCTTTTCTTTCCAT
66 ATTCCCTTCATTATGATACATGACATTGAT-GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
*
6665 CATTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCT
130 CGTTTTTGATAGAATCAAAG-TTTTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC-
* * *
6730 ATTCTTTTCAGGATTAGGC-AC-TACAAGCATAGTCTTCTCATTAA-GATACGCGATATTGATAT
193 ATTCTTTTCAAGATTAGGCAACATA-AA-CATAGTCTTCTCA-TAAGGATACACGATATTGATAC
* * * * * * * * * *
6792 TTTTGTTTCGCAGGAAAGGC-AT-TTCCATCAATTTTCGAAAAGTCTAAGTTCGGGTCTCAAAAG
255 TTTGGTTTCACAAGAAAAGCTTTCTTCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAAAG
* * * **
6855 AGACAAACGTAGATTCTAGTAATGATCTTCATTCA-TTT-TGTAATTAGGCACAATAATTACATT
320 AGACAAACATAGATTCTAGTAATGATCTTCTTTCATTTTATGT-ATTAGGCACTATAAACACATT
* * * * * * *
6918 TTCCTTATTAAGATAAATGATATTGATGATTTTCTTTTCCATGAAAAACTTTTCTTTGCCCTATT
384 CTCCTTATTAGGATAAATGATACTAATGATTTTCTTTT-AATGGAAATCTTTTCTTTGCCCTATT
*
6983 TTCCTTAAAATCAAAGTTCATCCCTT
448 TTCCTTAAAATCAAAGTTCATCCATT
* * * * *
7009 AAATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAATAC
1 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACAC
* * *
7074 CTTCCCCTCATT-TGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTTCTTTCC-C
66 ATTCCCTTCATTAT-GATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* *
7137 CTGATTTTGATAGAATCAAAGTTTATCTCTTAAATACA-ACAAATATGAATACTCATACTAATTC
130 C-GTTTTTGATAGAATCAAAGTTT-TCTCTTAAATA-AGACAAACATGAATACTCATACTAA-TC
* * * * * * * *
7201 CAATTCTTTTCAAGATTAGGCACCGTAAACATA-ACAGTCTTATAAAGATACACGATATTGA-GC
191 CCATTCTTTTCAAGATTAGGCAACATAAACATAGTC-TTCTCATAAGGATACACGATATTGATAC
* * ** * *
7264 TTTGGTTTTGA-AAGAAAAGCTTTCTTCTCACCACTTTTTATAAAGTCTAAGTTCATCCCTCAAA
255 TTTGG-TTTCACAAGAAAAGCTTTCTTC-CACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAA
* *
7328 AGAGACAAACA-ATGATTCTAGTAATTATCTTCTTTCATTTTATG-ATTAGGCACTTTAAACACA
318 AGAGACAAACATA-GATTCTAGTAATGATCTTCTTTCATTTTATGTATTAGGCACTATAAACACA
* *
7391 TTCGCCTCT-TTAGGATAAATGATACTAAT-ATTTT-TTTCTGAATGGAAATCTTTTATTTGCCC
382 TTCTCCT-TATTAGGATAAATGATACTAATGATTTTCTTT-T-AATGGAAATCTTTTCTTTGCCC
* * *
7453 TATTTTCCTTAAAATTAAACTTCA-ACACTT
444 TATTTTCCTTAAAATCAAAGTTCATCCA-TT
*
7483 AAATAAAACAA
1 AAATAAGACAA
7494 TTTCCCTTAT
Statistics
Matches: 1196, Mismatches: 192, Indels: 90
0.81 0.13 0.06
Matches are distributed among these distances:
471 1 0.00
472 38 0.03
473 342 0.29
474 164 0.14
475 523 0.44
476 120 0.10
477 8 0.01
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (473 bp):
AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACAC
ATTCCCTTCATTATGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
GTTTTTGATAGAATCAAAGTTTTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCATT
CTTTTCAAGATTAGGCAACATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTGGT
TTCACAAGAAAAGCTTTCTTCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAAAGAGACAA
ACATAGATTCTAGTAATGATCTTCTTTCATTTTATGTATTAGGCACTATAAACACATTCTCCTTA
TTAGGATAAATGATACTAATGATTTTCTTTTAATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
AATCAAAGTTCATCCATT
Found at i:7907 original size:419 final size:418
Alignment explanation
Indices: 7078--7912 Score: 1011
Period size: 420 Copynumber: 2.0 Consensus size: 418
7068 AAATACCTTC
* *
7078 CCCTCATTTGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTTCTTTCCCCTGATT
1 CCCTCATTAGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTTCTTTCACCT-ATT
*
7143 TTGATAGAATCAAAGTTTATCTCTTAAATACAACAAATATGAATACTCATACTAATTCCAATTCT
65 TTGATAGAATCAAAGTTTATCTCTTAAATACAACAAATATGAATACTCATACTAATCCCAATTCT
* *
7208 TTTCAAGATTAGGCACCGTAAACATAACAGTCTTATAAAGATACACGATATTGAGCTTTGGTTTT
130 TTTCAAGATTAAGCACCGTAAACATAACAGTCTCATAAAGATACACGATATTGAGCTTTGGTTTT
* * *
7273 GAAAGAAAAGCTTTCTTCTCACCACTTTTTATAAAGTCTAAGTTCATCCCTCAAAAGAGACAAAC
195 CAAAGAAAAGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCATCCCTCAAAAGAGACAAAC
* * * * * * * *
7338 AATGATTCTAGTAATTATCTTCTTTCATTTTATGATTAGGCACTTTAAACACATTCGCCTCTTTA
260 AAGGATTCTAGCAATGATCTTCATTCAATTTATGATTAGGCACTATAAACAAATTCGCCTCATTA
* * *
7403 GGATAAATGATACTAATATTTTTTTCTGAATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAAT
325 GGAGAAATGAGACTAATATTTTTTTCTGAATGGAAATCTTTTATTTGCACTATTTTCCTTAAAAT
* *
7468 TAAACTTCAACACTTAAATAAAACAATTT
390 CAAACTTCAACACATAAATAAAACAATTT
* * * *
7497 CCCTTATTAGGATACATGACCTTTATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCGACCT-TT
1 CCCTCATTAGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTTCTTTC-ACCTATT
* *
7561 TTCGATAGAATCAAAGTTTGA-CTCTTAAATA-AGA-AAAGCT-TGAATACTTATACTAATCCCC
65 TT-GATAGAATCAAAGTTT-ATCTCTTAAATACA-ACAAA--TATGAATACTCATACTAATCCCA
* * * * **** * * * *
7622 ATTTTTTTCAGGATTAAGCACCTTAAATATAGTTTTCTCATAAGGATACAGGATATTTATGTTTT
125 ATTCTTTTCAAGATTAAGCACCGTAAACATAACAGTCTCATAAAGATACACGATATTGA-GCTTT
* * * * *
7687 GG-TTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAAAGA
189 GGTTTTCA-AAGAAAAGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCATCCCTCAAAAGA
* * ** *
7751 GCCAAACAAGGATTCTAGCAATGGTCTTCATTCAATTTATGATTAGGCTGTATAAACAAATTCTC
253 GACAAACAAGGATTCTAGCAATGATCTTCATTCAATTTATGATTAGGCACTATAAACAAATTCGC
* * * * *
7816 TTCATTAGGAGAAATGAGACTAATGATTTTTTTTTGCATGGAAATC-TTTCTTTGCATTATTTTC
318 CTCATTAGGAGAAATGAGACTAAT-ATTTTTTTCTGAATGGAAATCTTTTATTTGCACTATTTTC
* * *
7880 CTTAAAATCAAAGTTC-ACCCATAAATAAGACAA
382 CTTAAAATCAAACTTCAACACATAAATAAAACAA
7913 GCATCGAATC
Statistics
Matches: 350, Mismatches: 57, Indels: 18
0.82 0.13 0.04
Matches are distributed among these distances:
418 8 0.02
419 161 0.46
420 162 0.46
421 19 0.05
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.37
Consensus pattern (418 bp):
CCCTCATTAGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTTCTTTCACCTATTT
TGATAGAATCAAAGTTTATCTCTTAAATACAACAAATATGAATACTCATACTAATCCCAATTCTT
TTCAAGATTAAGCACCGTAAACATAACAGTCTCATAAAGATACACGATATTGAGCTTTGGTTTTC
AAAGAAAAGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCATCCCTCAAAAGAGACAAACA
AGGATTCTAGCAATGATCTTCATTCAATTTATGATTAGGCACTATAAACAAATTCGCCTCATTAG
GAGAAATGAGACTAATATTTTTTTCTGAATGGAAATCTTTTATTTGCACTATTTTCCTTAAAATC
AAACTTCAACACATAAATAAAACAATTT
Found at i:8970 original size:474 final size:476
Alignment explanation
Indices: 7486--10134 Score: 3202
Period size: 474 Copynumber: 5.6 Consensus size: 476
7476 AACACTTAAA
* *
7486 TAAAACA-ATTTCCCTT-ATT-AGGATACATGACCTTTATGCTTTGGTGTCACAAGAAAAGCTTT
1 TAAAACACATTT-CCTTCATTAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTT
* * * * *
7548 TCTTTCGACC-TTTTTCGATAGAATCAAAGTTTGACTCTTAAATAAGA-AAAGCTTGAATACTTA
65 TCTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CATGAATACTCA
* * * * * * *
7611 TACTAATCCCCATTTTTTTCAGGATTAAGCACCTTAAATATAGTTTTCTCATAAGGATACAGGAT
128 TACTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGAT
* ** * *
7676 ATTTATGTTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTG
193 ATTGATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAATGTCTAAGTTCATG
* * * * * ** *
7741 CCTCAAAAGAGCCAAACAAGGATTCTAGCAATGGTCTTCATTCAATTTATGATTAGGCTGTATAA
258 CCTCAAAAGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTTTAA
* * * * *
7806 ACAAATTCTCTTCATTAGGAGAAATGAGACTAATGATTTTTTTTTGCATGGAAATC-TTTCTTTG
323 ACACATTCTCCTCATTAGGATAAATGATACTAATGA-TTTTTTTTGCATAGAAATCTTTTCTTTG
** * * * *
7870 CATTATTTTCCTTAAAATCAAAGTTCA-CCCATAAATAAGACAAGCATCGAATCTTATAATAGTC
387 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* *
7934 TCCATTATTTTCAAGATTAGGAACC
452 TCCATTATTTCCAAGATTGGGAACC
* ** *
7959 TAAAACACATTTCCTTCATTAA-GATACATGGCATTGATGCTTTGGTGTCGTAAAAAAATGCTTT
1 TAAAACACATTTCCTTCATTAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAA-GCTTT
* * *
8023 TCTTTTCGCC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATACTCAT
65 TCTTTCCACCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* *
8087 ACTAATCACCCTT-TTTT-AGGATTAGGCACCATAAATATAGTCTTCTCATAAGGATACATGATA
129 ACTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATA
* ** * * *
8150 CTGATACTTTGGTTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTTGTAATGTGTAAGTTCGTGC
194 TTGATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAATGTCTAAGTTCATGC
* * * * * * *
8215 CTTAAATGAGACAAACATGGATTCGAGTAATGATCTTTATTCATTTTATGATTTGGCACTTTAAG
259 CTCAAAAGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTTTAAA
* * *
8280 CACATTCTCCTCATTGGGATAAATGATATTAATGATTTTGTTTTGCATGGAAATCTTTTCTTTGC
324 CACATTCTCCTCATTAGGATAAATGATACTAATGATTTT-TTTTGCATAGAAATCTTTTCTTTGC
** * **
8345 CCTGCTTTCCATAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATTAATTCTCATAACAGTC
388 CCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* *
8410 TCCATTATTTTCAGGATTGGGAACC
452 TCCATTATTTCCAAGATTGGGAACC
* ** * * *
8435 TAAAACACATTCCCTTC-TTTGGGATACATGACTTTGATGCTTTGGAGTCATAAGAAAAGCTTTT
1 TAAAACACATTTCCTTCATTAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
* ** * *
8499 CTTTCCAGCGATTTTGATAGAATCAAAGTTTGTCTCCAAAATATGACAAACATGAATACTCACAC
66 CTTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * * **
8564 TAATTC-CAATTCTTTTCAAGATTTGGCACCTTAAACATAGTAGTCTCATAAGGATACATGAT-T
131 TAA-TCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
* * * * * *
8627 TAGATGCATTGGTTTCACAAGAAAGGGTTTTTTCCCACTAATTTTTATTAA-GTCTAAGTTCATC
195 T-GATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTT-GTAATGTCTAAGTTCATG
* * * ** * *
8691 CCTCAAAAGAGGCAAACATTGATTCTAGCATTTCTCTTCCTTCATTTTACGATTAGGCACTTTAA
258 CCTCAAAAGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTTTAA
* * * *
8756 ACACATT-TGCCTCATTAGGATAATTGCTACTAATGA-TTTTTTTGCCTAGAAATCTTTTATTTG
323 ACACATTCT-CCTCATTAGGATAAATGATACTAATGATTTTTTTTGCATAGAAATCTTTTCTTTG
*
8819 CCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
387 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
*
8884 TCTATTATTTCCAAGATTGGGAACC
452 TCCATTATTTCCAAGATTGGGAACC
* ** *
8909 TATAACACATTTCCTTCATTAAGG-TACATGACATTGATGCTTTGGTGTTGCAGGAAAAGCTTTT
1 TAAAACACATTTCCTTCATTAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
* * * *
8973 CTTTCCACCGGTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATGC
66 CTTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * *
9038 TAATCACTATTCTTTTTAGGATTAGGCACCATAAACATAATCTTCTCATAAGGATACATGATATT
131 TAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATT
*
9103 GATACTTTGGTTTCACAAGAAAGGC-TTTTTCCCCCCAATTTTTGTAATGTCTAAGTTCATGCCT
196 GATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAATGTCTAAGTTCATGCCT
* * *
9167 CAAATG-GGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTATGATTTGGCACTTTAAAC
261 CAAAAGAGG-CAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTTTAAAC
** *
9231 ACATTCTCCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTTGC
325 ACATTCTCCTCATTAGGATAAATGATACTAATGATTTT-TTTTGCATAG-AAATCTTTTCTTTGC
***
9295 CCTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGCAACAGTC
388 CCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* *
9360 TCCATAAATTT-CAGGATTGGGAACC
452 TCCAT-TATTTCCAAGATTGGGAACC
** *
9385 TAAAACACATTTATTTCATT-AGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTT
1 TAAAACACATTTCCTTCATTAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
* * * *
9449 CTTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATACGATAAACATGAATAGTCACAC
66 CTTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
** * ** * *
9514 TAATTCTA--ATTCTTTTCAAAATTAGGCACCGTAAACATAGTAGTCTCATTAGGATACACGAT-
131 TAA-TC-ACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATA
* * * * * * *
9576 TTAGATGCTTTGGATTCGCAAGAAAGACTTTTTTCCTACCAATTTTTATTAA-GTCAAAGTTCAT
194 TT-GATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTT-GTAATGTCTAAGTTCAT
* * * * ** * *
9640 CCCTCAAAAGAGGCAAACGTTGATTCTAGTATTTCTCTTCCTTCATTTTACGATTAGGCACTTTA
257 GCCTCAAAAGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTTTA
* * * * * * * * *
9705 AAAACATTCACCTCATTAGGATTATTAATACTAACGA-TTTTTTTGCATAAAAATATTTTATTTG
322 AACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTTTTTGCATAGAAATCTTTTCTTTG
* *
9769 CCCTATTTTCCTTAAAATCAAAGTTTC-TTCCTTAAATAAGACAAGTATCGATTCTCATAACAGT
387 CCCTATTTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGT
9833 CTCCATTATTTCCAAGATTGGGAACC
451 CTCCATTATTTCCAAGATTGGGAACC
* * * *
9859 TAAAACACATTTCCTTCATTAA-GACACAAGACATTAATGCTTTGCTGTCACAAGAAAAGCTTTT
1 TAAAACACATTTCCTTCATTAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
* * * *
9923 CTTTTCACCG-TTGTTTATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAACACTCATA
66 CTTTCCACCGATT-TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
*
9987 CTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
130 CTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
* * *
10052 TGATACTTTGGTTTCGCAAGAAAGGCTTCTTTCCCACC-ATTTTTTTAATGTCTAAGTTCATGCC
195 TGATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAATGTCTAAGTTCATGCC
* *
10116 TCAAATGAGACAAACATGG
260 TCAAAAGAGGCAAACATGG
10135 GGCAAGGTGC
Statistics
Matches: 1852, Mismatches: 279, Indels: 90
0.83 0.13 0.04
Matches are distributed among these distances:
472 14 0.01
473 357 0.19
474 558 0.30
475 274 0.15
476 361 0.19
477 279 0.15
478 9 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TAAAACACATTTCCTTCATTAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
CTTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
TAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATT
GATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAATGTCTAAGTTCATGCCT
CAAAAGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTTTAAACA
CATTCTCCTCATTAGGATAAATGATACTAATGATTTTTTTTGCATAGAAATCTTTTCTTTGCCCT
ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
TTATTTCCAAGATTGGGAACC
Found at i:9359 original size:950 final size:946
Alignment explanation
Indices: 7486--10134 Score: 3707
Period size: 950 Copynumber: 2.8 Consensus size: 946
7476 AACACTTAAA
* *
7486 TAAAACA-ATTTCCCTT-ATTAGGATACATGACCTTT-ATGCTTTGGTGTCACAAGAAAAGCTTT
1 TAAAACACA-TTCACTTCATTAGGATACATGA-CTTTGATGCTTTGGAGTCACAAGAAAAGCTTT
* ** * * * *
7548 TCTTTCGACCTTTTTCGATAGAATCAAAGTTTGACTCTTAAATAAGAAAAGCTTGAATACTTATA
64 TCTTTCCACGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGAAAA-CATGAATACTCACA
* * * * * * ** *
7613 CTAATCCCCATTTTTTTCAGGATTAAGCACCTTAAATATAGTTTTCTCATAAGGATACAGGATAT
127 CTAATTCCAATTCTTTTCAAGATTAGGCACCTTAAACATAGTAGTCTCATAAGGATACACGAT-T
* * * * * *
7678 T-TATGTTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTT-GTAATGTCTAAGTTCGTG
191 TAGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTATTAA-GTCTAAGTTCATC
* ** * ** * * * ** *
7741 CCTCAAAAGAGCCAAACAAGGATTCTAGCAATGGTCTTCATTCAATTTATGATTAGGCTGTATAA
255 CCTCAAAAGAGGCAAACATTGATTCTAGCATTTCTCTTCCTTCATTTTACGATTAGGCACTTTAA
* * * * * * *
7806 ACAAATTCTCTTCATTAGGAGAAATGAGACTAATGATTTTTTTTTGCATGGAAATC-TTTCTTTG
320 ACACATT-TCCTCATTAGGATAATTGATACTAATGA--TTTTTTTGCATAGAAATCTTTTATTTG
** * * * *
7870 CATTATTTTCCTTAAAATCAAAGTTCA-CCCATAAATAAGACAAGCATCGAATCTTATAATAGTC
382 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* * *
7934 TCCATTATTTTCAAGATTAGGAACCTAAAACACATTTCCTTCATTAAGATACATGGCATTGATGC
447 TCCATTATTTCCAAGATTGGGAACCTAAAACACATTTCCTTCATTAAGATACATGACATTGATGC
* * * * *
7999 TTTGGTGTCGTAAAAAAATGCTTTTCTTTTCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
512 TTTGGTGTCGCAAGAAAA-GCTTTTCTTTTCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTAA
* ** *
8064 ATAAGAAAAACATGAATACTCATACTAATCACCCT-TTTTTAGGATTAGGCACCATAAATATAGT
576 ATAAGACAAACATGAATACTCATACTAATCACATTCTTTTTAGGATTAGGCACCATAAACATAGT
* * *
8128 CTTCTCATAAGGATACATGATACTGATACTTTGGTTTTGCAAGAAAGGCTTTTTTCCTACCAATT
641 CTTCTCATAAGGATACATGATATTGATACTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATT
* * *
8193 TTTGTAATGTGTAAGTTCGTGCCTTAAATGAGACAAACATGGATTCGAGTAATGATCTTTATTCA
705 TTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCGAGTAATGATCTTTATTCA
* * *
8258 TTTTATGATTTGGCACTTTAAGCACATTCTCCTCATTGGGATAAATGATATTAATGATTTTGTTT
770 TTTTATGATTTGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTT
* *
8323 TGCATGGAAATCTTTTCTTTGCCCTGCTTTCCATAAAATCAAAAGTTCATCCCTTAAATAAGACA
835 TGCATGAAAATCTTTTCTTTGCCCTACTTTCCATAAAATCAAAAGTTCATCCCTTAAATAAGACA
* * * *
8388 AGCATTAATTCTCATAACAGTCTCCATTATTTTCAGGATTGGGAACC
900 AGCATCAATTCTCACAACAGTCTCCATAAATTTCAGGATTGGGAACC
* * * *
8435 TAAAACACATTCCCTTCTTTGGGATACATGACTTTGATGCTTTGGAGTCATAAGAAAAGCTTTTC
1 TAAAACACATTCACTTCATTAGGATACATGACTTTGATGCTTTGGAGTCACAAGAAAAGCTTTTC
** *
8500 TTTCCAGCGATTTTGATAGAATCAAAGTTTGTCTCCAAAATATGACAAACATGAATACTCACACT
66 TTTCCA-CGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-AAACATGAATACTCACACT
* *
8565 AATTCCAATTCTTTTCAAGATTTGGCACCTTAAACATAGTAGTCTCATAAGGATACATGATTTAG
129 AATTCCAATTCTTTTCAAGATTAGGCACCTTAAACATAGTAGTCTCATAAGGATACACGATTTAG
* * *
8630 ATGCATTGGTTTCACAAGAAAGGGTTTTTTCCCACTAATTTTTATTAAGTCTAAGTTCATCCCTC
194 ATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTATTAAGTCTAAGTTCATCCCTC
8695 AAAAGAGGCAAACATTGATTCTAGCATTTCTCTTCCTTCATTTTACGATTAGGCACTTTAAACAC
259 AAAAGAGGCAAACATTGATTCTAGCATTTCTCTTCCTTCATTTTACGATTAGGCACTTTAAACAC
* *
8760 ATTTGCCTCATTAGGATAATTGCTACTAATGATTTTTTTGCCTAGAAATCTTTTATTTGCCCTAT
324 ATTT-CCTCATTAGGATAATTGATACTAATGATTTTTTTGCATAGAAATCTTTTATTTGCCCTAT
* *
8825 TTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATT
388 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATT
* *
8890 ATTTCCAAGATTGGGAACCTATAACACATTTCCTTCATTAAGGTACATGACATTGATGCTTTGGT
453 ATTTCCAAGATTGGGAACCTAAAACACATTTCCTTCATTAAGATACATGACATTGATGCTTTGGT
* * * *
8955 GTTGCAGGAAAAGCTTTTCTTTCCACCGGTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
518 GTCGCAAGAAAAGCTTTTCTTTTCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
9020 AAACAAGAATACTCATGCTAATCACTATTCTTTTTAGGATTAGGCACCATAAACATAATCTTCTC
583 AAACATGAATACTCATACTAATCAC-ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTC
* *
9085 ATAAGGATACATGATATTGATACTTTGGTTTCACAAGAAAGGCTTTTTCCCCCCAATTTTTGTAA
647 ATAAGGATACATGATATTGATACTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAA
* *
9150 TGTCTAAGTTCATGCCTCAAATGGGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTATG
712 TGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCGAGTAATGATCTTTATTCATTTTATG
* *
9215 ATTTGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGA
777 ATTTGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGA
* * *
9280 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATCG
842 AAATCTTTTCTTTGCCCTACTTTCCATAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATCA
**
9345 ATTCTTGCAACAGTCTCCATAAATTTCAGGATTGGGAACC
907 ATTCTCACAACAGTCTCCATAAATTTCAGGATTGGGAACC
* * *
9385 TAAAACACATTTATTTCATTAGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTTC
1 TAAAACACATTCACTTCATTAGGATACATGACTTTGATGCTTTGGAGTCACAAGAAAAGCTTTTC
* *
9450 TTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATACGATAAACATGAATAGTCACACT
66 TTTCCA-CGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-AAACATGAATACTCACACT
* * * *
9515 AATTCTAATTCTTTTCAAAATTAGGCACCGTAAACATAGTAGTCTCATTAGGATACACGATTTAG
129 AATTCCAATTCTTTTCAAGATTAGGCACCTTAAACATAGTAGTCTCATAAGGATACACGATTTAG
* * * * *
9580 ATGCTTTGGATTCGCAAGAAAGACTTTTTTCCTACCAATTTTTATTAAGTCAAAGTTCATCCCTC
194 ATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTATTAAGTCTAAGTTCATCCCTC
* * *
9645 AAAAGAGGCAAACGTTGATTCTAGTATTTCTCTTCCTTCATTTTACGATTAGGCACTTTAAAAAC
259 AAAAGAGGCAAACATTGATTCTAGCATTTCTCTTCCTTCATTTTACGATTAGGCACTTTAAACAC
* * * * * *
9710 ATTCACCTCATTAGGATTATTAATACTAACGATTTTTTTGCATAAAAATATTTTATTTGCCCTAT
324 ATT-TCCTCATTAGGATAATTGATACTAATGATTTTTTTGCATAGAAATCTTTTATTTGCCCTAT
* *
9775 TTTCCTTAAAATCAAAGTTTC-TTCCTTAAATAAGACAAGTATCGATTCTCATAACAGTCTCCAT
388 TTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAT
* * * *
9839 TATTTCCAAGATTGGGAACCTAAAACACATTTCCTTCATTAAGACACAAGACATTAATGCTTTGC
452 TATTTCCAAGATTGGGAACCTAAAACACATTTCCTTCATTAAGATACATGACATTGATGCTTTGG
* * *
9904 TGTCACAAGAAAAGCTTTTCTTTTCACCGTTGTTTATAGAATCAAAGTTTGTCTCCTAAATAAGA
517 TGTCGCAAGAAAAGCTTTTCTTTTCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
9969 CAAACATGAACACTCATACTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
582 CAAACATGAATACTCATACTAATCA-CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCT
* *
10034 CATAAGGATACACGATATTGATACTTTGGTTTCGCAAGAAAGGCTTCTTTCCCACC-ATTTTTTT
646 CATAAGGATACATGATATTGATACTTTGGTTTCGCAAGAAAGGCTT-TTTCCCACCAATTTTTGT
10098 AATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
710 AATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
10135 GGCAAGGTGC
Statistics
Matches: 1510, Mismatches: 174, Indels: 31
0.88 0.10 0.02
Matches are distributed among these distances:
948 16 0.01
949 122 0.08
950 1276 0.85
951 96 0.06
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (946 bp):
TAAAACACATTCACTTCATTAGGATACATGACTTTGATGCTTTGGAGTCACAAGAAAAGCTTTTC
TTTCCACGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAACATGAATACTCACACTAA
TTCCAATTCTTTTCAAGATTAGGCACCTTAAACATAGTAGTCTCATAAGGATACACGATTTAGAT
GCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTATTAAGTCTAAGTTCATCCCTCAA
AAGAGGCAAACATTGATTCTAGCATTTCTCTTCCTTCATTTTACGATTAGGCACTTTAAACACAT
TTCCTCATTAGGATAATTGATACTAATGATTTTTTTGCATAGAAATCTTTTATTTGCCCTATTTT
CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATT
TCCAAGATTGGGAACCTAAAACACATTTCCTTCATTAAGATACATGACATTGATGCTTTGGTGTC
GCAAGAAAAGCTTTTCTTTTCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
CATGAATACTCATACTAATCACATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAA
GGATACATGATATTGATACTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAATGTC
TAAGTTCATGCCTCAAATGAGACAAACATGGATTCGAGTAATGATCTTTATTCATTTTATGATTT
GGCACTTTAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGAAAAT
CTTTTCTTTGCCCTACTTTCCATAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATCAATTC
TCACAACAGTCTCCATAAATTTCAGGATTGGGAACC
Found at i:10539 original size:48 final size:48
Alignment explanation
Indices: 10502--10699 Score: 245
Period size: 48 Copynumber: 4.1 Consensus size: 48
10492 AGAGCTTAAC
* *
10502 CAAACTCAAATCTTCCCTCGTTTGACTGTATTGGTGTTAGGGCCTGGT
1 CAAACTCAAATCTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTAGT
*** * *
10550 CAAACTCTTTTCATCCCTCATTTGACTATATTGGTGTTAGGGCCTAGT
1 CAAACTCAAATCTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTAGT
* *
10598 TAAACTCAAATCTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTGGT
1 CAAACTCAAATCTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTAGT
** * ** *
10646 CAAACTC-TTTCCATCCCTTATTTGACTATATTGGTGTTAGGGCCTGGT
1 CAAACTCAAAT-CTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTAGT
10694 CAAACT
1 CAAACT
10700 ATCCTCTATC
Statistics
Matches: 129, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
47 1 0.01
48 128 0.99
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (48 bp):
CAAACTCAAATCTTCCCTCGTTTGACTATATTGGTGTTAGGGCCTAGT
Found at i:10621 original size:96 final size:96
Alignment explanation
Indices: 10452--10699 Score: 370
Period size: 96 Copynumber: 2.6 Consensus size: 96
10442 ACTGTCTTTA
* * * * * * * **
10452 GTCACACTCTTTTCATCCCTTGTTTGACTGTACTAGTGTTAGAGCTTAACCAAACTCAAATCTTC
1 GTCAAACTCTTTTCATCCCTTATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCAAATCTTC
*
10517 CCTCGTTTGACTGTATTGGTGTTAGGGCCTG
66 CCTCGTTTGACTATATTGGTGTTAGGGCCTG
* *
10548 GTCAAACTCTTTTCATCCCTCATTTGACTATATTGGTGTTAGGGCCTAGTTAAACTCAAATCTTC
1 GTCAAACTCTTTTCATCCCTTATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCAAATCTTC
10613 CCTCGTTTGACTATATTGGTGTTAGGGCCTG
66 CCTCGTTTGACTATATTGGTGTTAGGGCCTG
* *
10644 GTCAAACTCTTTCCATCCCTTATTTGACTATATTGGTGTTAGGGCCTGGTCAAACT
1 GTCAAACTCTTTTCATCCCTTATTTGACTATATTGGTGTTAGGGCCTAGTCAAACT
10700 ATCCTCTATC
Statistics
Matches: 136, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 136 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (96 bp):
GTCAAACTCTTTTCATCCCTTATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCAAATCTTC
CCTCGTTTGACTATATTGGTGTTAGGGCCTG
Found at i:10799 original size:44 final size:44
Alignment explanation
Indices: 10735--11301 Score: 314
Period size: 44 Copynumber: 12.9 Consensus size: 44
10725 CAGATTCTTT
* *
10735 TCATTC-TGATTTGATGTATGGTTATCACCCTGGTCAAATCTACC
1 TCATTCTTG-TTTGACGTATGGTTACCACCCTGGTCAAATCTACC
* * * * *
10779 TCCTTCTTGTTTGACATATGGTTACCA-CCTGGGTCAAATTTTCTT
1 TCATTCTTGTTTGACGTATGGTTACCACCCT-GGTCAAATCTAC-C
* *
10824 TCATTC-TGATTTGATGTATGGTTACCACCCTTGTCAAATCTACC
1 TCATTCTTG-TTTGACGTATGGTTACCACCCTGGTCAAATCTACC
** * * *
10868 TTTTTCTTGTCTGACGTATGGTTACCACCCTGGTTAAATCCGT-CT
1 TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCAAAT-C-TACC
* * * * **
10913 TC-TTCTTGTTTGACATATGATTACCACCCTGGTCAGATTTATTT
1 TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCAAATCTA-CC
** * * *
10957 TCATTCTAATTTGACTTATGGTTACCACCTTGGCCAAATCTACC
1 TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCAAATCTACC
** * * * * * * **
11001 TTTTTCCTATCTAACGTATGGTTACCACCTTGGTCAGATTCT-TT
1 TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCA-AATCTACC
* * * * * *
11045 TCATT-TTGATTTGACGTATAGTTACCACCGTGGTTAAGTTTACA
1 TCATTCTTG-TTTGACGTATGGTTACCACCCTGGTCAAATCTACC
* * * *
11089 TCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAGAT-T-CC
1 TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCAAATCTACC
* * * * * *
11131 TTTCATT-TCGATTGGCGTATGGCTACCACCTTGGTCAAATCTGCC
1 --TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCAAATCTACC
* * * * * * * * **
11176 TCCTT-TCTATTTGACATATTGCTAGCACCCTGATCAGATTCT-TT
1 TCATTCT-TGTTTGACGTATGGTTACCACCCTGGTCA-AATCTACC
* * *
11220 TCATTC-CGATTTGACGTATGGTTACCACCCTGGTCAAATATGCC
1 TCATTCTTG-TTTGACGTATGGTTACCACCCTGGTCAAATCTACC
* * *
11264 TCTTTCTTGTTTAACATATGGTTACCACCCTGGTCAAA
1 TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCAAA
11302 CGATTTGCAT
Statistics
Matches: 388, Mismatches: 110, Indels: 50
0.71 0.20 0.09
Matches are distributed among these distances:
42 2 0.01
43 41 0.11
44 260 0.67
45 81 0.21
46 4 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (44 bp):
TCATTCTTGTTTGACGTATGGTTACCACCCTGGTCAAATCTACC
Found at i:10888 original size:89 final size:89
Alignment explanation
Indices: 10733--10896 Score: 274
Period size: 89 Copynumber: 1.8 Consensus size: 89
10723 GTCAGATTCT
* *
10733 TTTCATTCTGATTTGATGTATGGTTATCACCCTGGTCAAATCTACCTCCTTCTTGTTTGACATAT
1 TTTCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAATCTACCTCCTTCTTGTCTGACATAT
10798 GGTTACCACCTGGGTCAAATTTTC
66 GGTTACCACCTGGGTCAAATTTTC
* ** *
10822 TTTCATTCTGATTTGATGTATGGTTACCACCCTTGTCAAATCTACCTTTTTCTTGTCTGACGTAT
1 TTTCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAATCTACCTCCTTCTTGTCTGACATAT
10887 GGTTACCACC
66 GGTTACCACC
10897 CTGGTTAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 69 1.00
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (89 bp):
TTTCATTCTGATTTGATGTATGGTTACCACCCTGGTCAAATCTACCTCCTTCTTGTCTGACATAT
GGTTACCACCTGGGTCAAATTTTC
Found at i:10995 original size:133 final size:132
Alignment explanation
Indices: 10750--11301 Score: 469
Period size: 133 Copynumber: 4.2 Consensus size: 132
10740 CTGATTTGAT
* ** *
10750 GTATGGTTATCACCCTGGTCAAATCTACCTCCTTCTTGTTTGACATATGGTTACCA-CCTGGGTC
1 GTATGGTTACCACCCTGGTCAAATCCGCCTCCTT-TTGTTTGACATATGATTACCACCCT-GGTC
* * *
10814 AAATTT-TCTTTCATTCTGATTTGATGTATGGTTACCACCCTTGTCAAATCTACCTTTTTCTTGT
64 AGATTTAT-TTTCATTCTGATTTGACGTATGGTTACCACCCTGGTCAAATCTACCTTTTTCTTGT
*
10878 CTGAC
128 CTAAC
* * *
10883 GTATGGTTACCACCCTGGTTAAATCCGTCTTCTTCTTGTTTGACATATGATTACCACCCTGGTCA
1 GTATGGTTACCACCCTGGTCAAATCCGCCTCCTT-TTGTTTGACATATGATTACCACCCTGGTCA
* * * * * *
10948 GATTTATTTTCATTCTAATTTGACTTATGGTTACCACCTTGGCCAAATCTACCTTTTTCCTATCT
65 GATTTATTTTCATTCTGATTTGACGTATGGTTACCACCCTGGTCAAATCTACCTTTTTCTTGTCT
11013 AAC
130 AAC
* * * *** * * * *
11016 GTATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGATTTGACGTAT-AGTTACCACCGTGGTT
1 GTATGGTTACCACCCTGGTCAAATCCGCCTCCTTTTG-TTTGACATATGA-TTACCACCCTGGTC
** * * * * *
11080 A-AGTTTA-CATCCTTCTTATCTGACGTATGGTTACCACCCTGGTCAGAT-T-CCTTTCATT-TC
64 AGA-TTTATTTTCATTCTGATTTGACGTATGGTTACCACCCTGGTCAAATCTACCTTT--TTCTT
**
11140 GAT-TGGC
126 G-TCTAAC
* * * * * * *
11147 GTATGGCTACCACCTTGGTCAAATCTGCCTCCTTTCTATTTGACATATTG-CTAGCACCCTGATC
1 GTATGGTTACCACCCTGGTCAAATCCGCCTCCTTT-TGTTTGACATA-TGATTACCACCCTGGTC
* * * * * *
11211 AGA-TTCTTTTCATTCCGATTTGACGTATGGTTACCACCCTGGTCAAATATGCCTCTTTCTTGTT
64 AGATTTATTTTCATTCTGATTTGACGTATGGTTACCACCCTGGTCAAATCTACCTTTTTCTTGTC
11275 TAAC
129 TAAC
*
11279 ATATGGTTACCACCCTGGTCAAA
1 GTATGGTTACCACCCTGGTCAAA
11302 CGATTTGCAT
Statistics
Matches: 330, Mismatches: 72, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
130 7 0.02
131 85 0.26
132 68 0.21
133 166 0.50
134 4 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (132 bp):
GTATGGTTACCACCCTGGTCAAATCCGCCTCCTTTTGTTTGACATATGATTACCACCCTGGTCAG
ATTTATTTTCATTCTGATTTGACGTATGGTTACCACCCTGGTCAAATCTACCTTTTTCTTGTCTA
AC
Found at i:11235 original size:175 final size:177
Alignment explanation
Indices: 10879--11299 Score: 440
Period size: 175 Copynumber: 2.4 Consensus size: 177
10869 TTTTCTTGTC
* * * * *
10879 TGACGTATGGTTACCACCCTGGTTAAATCCGT-C-TTCTTCTTGTTTGACATATGATTACCACCC
1 TGACGTATAGTTACCACCCTGGTCAAAT--ATACATCCTTCTTGTTTGACATATGGTTACCACCC
* * * *
10942 TGGTCAGATTTATTTTCATTCTAATTTGACTTATGGTTACCACCTTGGCCAAATCTACCTTTTTC
64 TGGTCAGATTTACTTTCATTCTAATTTGACGTATGGCTACCACCTTGGCCAAATCTACCTCTTTC
* * * * **
11007 CTATCTAACGTATGGTTACCACCTTGGTCAGATTCTTTTCATTTTGATT
129 CTATCTAACATATGGCTACCACCCTGATCAGATTCTTTTCATTCCGATT
* * * * * * *
11056 TGACGTATAGTTACCACCGTGGTTAAGTTTACATCCTTCTTATCTGACGTATGGTTACCACCCTG
1 TGACGTATAGTTACCACCCTGGTCAAATATACATCCTTCTTGTTTGACATATGGTTACCACCCTG
* * * * *
11121 GTCAGA-TTCCTTTCATT-TCGA-TTGGCGTATGGCTACCACCTTGGTCAAATCTGCCTCCTTT-
66 GTCAGATTTACTTTCATTCT-AATTTGACGTATGGCTACCACCTTGGCCAAATCTACCT-CTTTC
* * * *
11182 CTATTTGACATATTGCTAGCACCCTGATCAGATTCTTTTCATTCCGATT
129 CTATCTAACATATGGCTACCACCCTGATCAGATTCTTTTCATTCCGATT
* * * * *
11231 TGACGTATGGTTACCACCCTGGTCAAATATGCCTCTTTCTTGTTTAACATATGGTTACCACCCTG
1 TGACGTATAGTTACCACCCTGGTCAAATATACATCCTTCTTGTTTGACATATGGTTACCACCCTG
11296 GTCA
66 GTCA
11300 AACGATTTGC
Statistics
Matches: 200, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
175 128 0.64
176 14 0.07
177 58 0.29
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.39
Consensus pattern (177 bp):
TGACGTATAGTTACCACCCTGGTCAAATATACATCCTTCTTGTTTGACATATGGTTACCACCCTG
GTCAGATTTACTTTCATTCTAATTTGACGTATGGCTACCACCTTGGCCAAATCTACCTCTTTCCT
ATCTAACATATGGCTACCACCCTGATCAGATTCTTTTCATTCCGATT
Found at i:11313 original size:88 final size:88
Alignment explanation
Indices: 10788--11301 Score: 387
Period size: 88 Copynumber: 5.8 Consensus size: 88
10778 CTCCTTCTTG
* * * * * * **
10788 TTTGACATATGGTTACCA-CCTGGGTCAAATTTTCTTTCATTCTGATTTGATGTATGGTTACCAC
1 TTTGACGTATGGTTACCACCCT-GGTCAAATCTGC-CTCTTTCTTATTTGACATATGGTTACCAC
*
10852 CCTTGTCAAATCTACCTTTTTC-TT--G-
64 CCTGGTCAAAT-T--C-TTTTCATTCCGA
* * * * * *
10877 TCTGACGTATGGTTACCACCCTGGTTAAATCCGTCT-TCTTCTTGTTTGACATATGATTACCACC
1 TTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-TTCTTATTTGACATATGGTTACCACC
* * **
10941 CTGGTCAGATTTATTTTCATTCTAA
65 CTGGTCA-AATTCTTTTCATTCCGA
* * * * * * * * * *
10966 TTTGACTTATGGTTACCACCTTGGCCAAATCTACCTTTTTCCTATCTAACGTATGGTTACCACCT
1 TTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTCTTATTTGACATATGGTTACCACCC
* **
11031 TGGTCAGATTCTTTTCATTTTGA
66 TGGTCAAATTCTTTTCATTCCGA
* * * * * * * * * *
11054 TTTGACGTATAGTTACCACCGTGGTTAAGTTTACATCCTTCTTATCTGACGTATGGTTACCACCC
1 TTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTCTTATTTGACATATGGTTACCACCC
* * *
11119 TGGTCAGATTCCTTTCATTTCGA
66 TGGTCAAATTCTTTTCATTCCGA
* * * * * *
11142 -TTGGCGTATGGCTACCACCTTGGTCAAATCTGCCTCCTTTC-TATTTGACATATTGCTAGCACC
1 TTTGACGTATGGTTACCACCCTGGTCAAATCTGCCT-CTTTCTTATTTGACATATGGTTACCACC
* *
11205 CTGATCAGATTCTTTTCATTCCGA
65 CTGGTCAAATTCTTTTCATTCCGA
* * *
11229 TTTGACGTATGGTTACCACCCTGGTCAAATATGCCTCTTTCTTGTTTAACATATGGTTACCACCC
1 TTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTCTTATTTGACATATGGTTACCACCC
11294 TGGTCAAA
66 TGGTCAAA
11302 CGATTTGCAT
Statistics
Matches: 332, Mismatches: 82, Indels: 23
0.76 0.19 0.05
Matches are distributed among these distances:
85 5 0.02
86 2 0.01
87 69 0.21
88 173 0.52
89 79 0.24
90 4 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (88 bp):
TTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTCTTATTTGACATATGGTTACCACCC
TGGTCAAATTCTTTTCATTCCGA
Found at i:11444 original size:42 final size:42
Alignment explanation
Indices: 11380--11615 Score: 239
Period size: 42 Copynumber: 5.6 Consensus size: 42
11370 TACCTTTGAT
* * *
11380 CCTTTATCTACCCATCGGCTTTGACCTAAGAGACTCCTTCAC
1 CCTTTGTCTACCCGTCGACTTTGACCTAAGAGACTCCTTCAC
11422 CCTTTGTCTACCCGTCGACTTTGA-CTCAAGAGACTCCTTCAC
1 CCTTTGTCTACCCGTCGACTTTGACCT-AAGAGACTCCTTCAC
* * **
11464 CCTTTGTCTGCCTC-TCGACTTCGACACGGA-AGACTCCTTCAC
1 CCTTTGTCTACC-CGTCGACTTTGAC-CTAAGAGACTCCTTCAC
* * *
11506 CCTTTGTCTACCTGTC-AGCTTT-AACTCAGGAGACTCCTTCAC
1 CCTTTGTCTACCCGTCGA-CTTTGACCT-AAGAGACTCCTTCAC
* * ** * *
11548 CCCTTGTCTACCTGTTAACTTTGACCTGAGAGACTTCTTCAC
1 CCTTTGTCTACCCGTCGACTTTGACCTAAGAGACTCCTTCAC
*
11590 CCTTTGTCTACCCGTCAACTTTGACC
1 CCTTTGTCTACCCGTCGACTTTGACC
11616 CGGGAGACTT
Statistics
Matches: 161, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 4 0.02
42 149 0.93
43 6 0.04
44 1 0.01
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (42 bp):
CCTTTGTCTACCCGTCGACTTTGACCTAAGAGACTCCTTCAC
Found at i:11622 original size:84 final size:84
Alignment explanation
Indices: 11398--11624 Score: 294
Period size: 84 Copynumber: 2.7 Consensus size: 84
11388 TACCCATCGG
* * *
11398 CTTTGACCTAAGAGACTCCTTCACCCTTTGTCTACCCGTCGACTTTGACTCAAGAGACTCCTTCA
1 CTTTGACCTGAGAGACTCCTTCACCCTTTGTCTACCCGTCAACTTTGACTCAGGAGACTCCTTCA
* * *
11463 CCCTTTGTCTGCCTCTCGA
66 CCCCTTGTCTACCTCTCAA
* * * * *
11482 CTTCGACACGGA-AGACTCCTTCACCCTTTGTCTACCTGTCAGCTTTAACTCAGGAGACTCCTTC
1 CTTTGAC-CTGAGAGACTCCTTCACCCTTTGTCTACCCGTCAACTTTGACTCAGGAGACTCCTTC
* *
11546 ACCCCTTGTCTACCTGTTAA
65 ACCCCTTGTCTACCTCTCAA
* * *
11566 CTTTGACCTGAGAGACTTCTTCACCCTTTGTCTACCCGTCAACTTTGACCCGGGAGACT
1 CTTTGACCTGAGAGACTCCTTCACCCTTTGTCTACCCGTCAACTTTGACTCAGGAGACT
11625 TCTTTATCCT
Statistics
Matches: 120, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
83 3 0.03
84 115 0.96
85 2 0.02
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.31
Consensus pattern (84 bp):
CTTTGACCTGAGAGACTCCTTCACCCTTTGTCTACCCGTCAACTTTGACTCAGGAGACTCCTTCA
CCCCTTGTCTACCTCTCAA
Found at i:14159 original size:24 final size:24
Alignment explanation
Indices: 14126--14211 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
14116 AAGAGAAAGA
*
14126 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
14150 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
14168 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* * *
14192 AGAGACGGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
14212 AGAGAGGAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 11 0.23
20 2 0.04
21 6 0.12
22 2 0.04
24 27 0.56
ACGTcount: A:0.41, C:0.02, G:0.47, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:14178 original size:42 final size:42
Alignment explanation
Indices: 14117--14235 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
14107 TAGCCCTCAA
* *
14117 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
14159 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACGGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
14201 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
14236 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:19512 original size:158 final size:159
Alignment explanation
Indices: 19344--20059 Score: 392
Period size: 158 Copynumber: 4.5 Consensus size: 159
19334 TTCGGGCCTC
* * * *
19344 AAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGAGTAGGCACTATAAACAC
1 AAATAAGACAAACAAGGATTCTAGTAAT-ATCTCCATTCATTTTGTGATTAGGCACCATAAACAC
*
19409 ATTCTCCTTATTAGGATATATGATATTAATGATTTTCGTTTGCATGGAAA-TTTTTCTTTGC-CC
65 ATTCTCCTTATTAGGATATATGATATTAATGATTTTCGTTTGCAAGGAAAGTTTTTCTTTGCACC
19472 TATTTTTCTTAAAATCAAAGTTTATCTCTT
130 TATTTTTCTTAAAATCAAAGTTTATCTCTT
* * * * ** * * *
19502 AAATAAGACAAGCATTGG-TTCTCGTAACTATCTCCATTCTTTTTAAGATTGGGAACCAAAAACA
1 AAATAAGACAAACA-AGGATTCTAGTAA-TATCTCCATTCATTTTGTGATTAGGCACCATAAACA
* * * * * * * * *
19566 CATTC-CCTTCATTAGGATACATGACATTAATG-CTTTGGTGTCGTAAGAAAAGCTTTTCTTTTC
64 CATTCTCCTT-ATTAGGATATATGATATTAATGATTTTCGT-TTGCAAGGAAAGTTTTTCTTTGC
* ** * ** *
19629 ACC-GTTTTTGATAGAATCGCAGTTTGTCTCTT
127 ACCTATTTTTCTTAAAATCAAAGTTTATCTCTT
* * * * * * * *
19661 AAATAAAACAGACATGAATACTCA-TACTAGTCACCATTCTTTTTAG-GATTAGGCACCATAAAC
1 AAATAAGACAAACAAGGATTCT-AGTAATA-TCTCCATTCATTTT-GTGATTAGGCACCATAAAC
* * * ** *** * *
19724 ATAGTCTTCTTATTAGGATATACAATATT-A-GGGCTTCGGTTT-CACAAGAAAGGCTTTTTC-C
63 ACATTCTCCTTATTAGGATATATGATATTAATGATTTTC-GTTTGCA-AGGAAA-G-TTTTTCTT
* * * * * *
19785 T-CACCAATTTTT-GTAAAGTCTAAGTTTGTGC-CTC
124 TGCACCTATTTTTCTTAAAATCAAAGTTTAT-CTCTT
* * * * *
19819 AAATGAGATAAACAAGGATTCTATTAATGATCTCCATTCATTTTGTGATTAGGTACTATAAACAC
1 AAATAAGACAAACAAGGATTCTAGTAAT-ATCTCCATTCATTTTGTGATTAGGCACCATAAACAC
* * * * **
19884 ATTCTCCTCATTATGATAAATGATATTAATGATTTTCTTTTGCTTGGAAA-TCTTTTCTTTGC-C
65 ATTCTCCTTATTAGGATATATGATATTAATGATTTTCGTTTGCAAGGAAAGT-TTTTCTTTGCAC
* * * * *
19947 CTATCTTCCTTAAAGTCAAACTTTATCCCTT
129 CTATTTTTCTTAAAATCAAAGTTTATCTCTT
* * ** * * * * * * * *
19978 TAATAAG-CAAGCATCGATTCTCGTAACAGTCTCCATTC-TTTCGAAGATTGGGAACCAAAAAGA
1 AAATAAGACAAACAAGGATTCTAGTAATA-TCTCCATTCATTTTG-TGATTAGGCACCATAAACA
20041 CATTC-CCTTCATTAGGATA
64 CATTCTCCTT-ATTAGGATA
20060 CATGGTGTTG
Statistics
Matches: 407, Mismatches: 119, Indels: 64
0.69 0.20 0.11
Matches are distributed among these distances:
156 1 0.00
157 26 0.06
158 230 0.57
159 135 0.33
160 15 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (159 bp):
AAATAAGACAAACAAGGATTCTAGTAATATCTCCATTCATTTTGTGATTAGGCACCATAAACACA
TTCTCCTTATTAGGATATATGATATTAATGATTTTCGTTTGCAAGGAAAGTTTTTCTTTGCACCT
ATTTTTCTTAAAATCAAAGTTTATCTCTT
Found at i:25152 original size:42 final size:42
Alignment explanation
Indices: 25093--25224 Score: 167
Period size: 42 Copynumber: 3.1 Consensus size: 42
25083 TTACTCTTCC
* * * * * *
25093 ATCT-TCTTTTCTCCTCCTCCTGTCATTCCTCCTCTCTCTATT
1 ATCTCTCTTATCT-CTCCTCTTATCATCCCTCCTATCTCTACT
25135 ATCTCTCTTATCTCTCCTCTTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTATCTCTCCTCTTATCATCCCTCCTATCTCTACT
* *
25177 ATCTCTCCTATCTCTCCTCTTATCATCCCTCCTATCTCTTCT
1 ATCTCTCTTATCTCTCCTCTTATCATCCCTCCTATCTCTACT
*
25219 TTCTCT
1 ATCTCT
25225 TTGAGGGCTA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 73 0.91
43 7 0.09
ACGTcount: A:0.11, C:0.41, G:0.01, T:0.48
Consensus pattern (42 bp):
ATCTCTCTTATCTCTCCTCTTATCATCCCTCCTATCTCTACT
Found at i:25156 original size:12 final size:12
Alignment explanation
Indices: 25139--25215 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 12
25129 TCTATTATCT
25139 CTCTTATCTCTC
1 CTCTTATCTCTC
25151 CTCTTATCATC-C
1 CTCTTATC-TCTC
*
25163 CTCCTATCTCT-
1 CTCTTATCTCTC
*
25174 -AC-TATCTCT-
1 CTCTTATCTCTC
25183 C-C-TATCTCTC
1 CTCTTATCTCTC
25193 CTCTTATCATC-C
1 CTCTTATC-TCTC
*
25205 CTCCTATCTCT
1 CTCTTATCTCT
25216 TCTTTCTCTT
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
9 15 0.28
10 2 0.04
11 5 0.09
12 28 0.52
13 4 0.07
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (12 bp):
CTCTTATCTCTC
Found at i:25173 original size:24 final size:24
Alignment explanation
Indices: 25143--25215 Score: 95
Period size: 24 Copynumber: 3.3 Consensus size: 24
25133 TTATCTCTCT
25143 TATCTCTCCTCTTATCATCCCTCC
1 TATCTCTCCTCTTATCATCCCTCC
*
25167 TATCTCT--AC-TATC-T--CTCC
1 TATCTCTCCTCTTATCATCCCTCC
25185 TATCTCTCCTCTTATCATCCCTCC
1 TATCTCTCCTCTTATCATCCCTCC
25209 TATCTCT
1 TATCTCT
25216 TCTTTCTCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
18 11 0.27
20 2 0.05
21 8 0.20
22 2 0.05
24 18 0.44
ACGTcount: A:0.14, C:0.42, G:0.00, T:0.44
Consensus pattern (24 bp):
TATCTCTCCTCTTATCATCCCTCC
Found at i:25192 original size:9 final size:9
Alignment explanation
Indices: 25134--25194 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
25124 CTCTCTCTAT
*
25134 TATCTCTCT
1 TATCTCTCC
25143 TATCTCTCC
1 TATCTCTCC
* *
25152 TCT-TAT-C
1 TATCTCTCC
*
25159 -ATCCCTCC
1 TATCTCTCC
*
25167 TATCTCTAC
1 TATCTCTCC
25176 TATCTCTCC
1 TATCTCTCC
25185 TATCTCTCC
1 TATCTCTCC
25194 T
1 T
25195 CTTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
6 1 0.03
7 2 0.05
8 3 0.08
9 34 0.85
ACGTcount: A:0.13, C:0.41, G:0.00, T:0.46
Consensus pattern (9 bp):
TATCTCTCC
Found at i:27397 original size:475 final size:476
Alignment explanation
Indices: 26487--27505 Score: 1472
Period size: 475 Copynumber: 2.1 Consensus size: 476
26477 GGTTCTCATC
* * * ** *
26487 ACATGAATAGTCATACTAATCCCTATTCTTTTCGAGATTAGGCACCATAAACATAGTATTCTCAT
1 ACATGAATACTAATACTAATCCCCATTCTTTAAG-GATTAGGCACCATAAACATAGTCTTCTCAT
* *
26552 AAGGATACACAATATTGATGCCTTGGTTTCGCAAGAAAGATTTTCTTCCCACCAAATTTTGTAAA
65 AAGGATACACAATATTGATGCCTTCGTTTCACAAGAAAGATTTTCTTCCCACCAAATTTTGTAAA
* *
26617 GTCTAAGTTCGTGCCTCAAAAAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGA
130 GTCTAAGTTCGTGCCTCAAAAAAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTATGA
* * *
26682 TTAGGAACCATAAACACATTCTCCTCATTAAGGTAAATGATATTTATGATTTTTTTTTGTATGGA
195 TTAGGAACCATAAACACATTCTCCTCATTAAGGTAAATGATATTGATGATTTTCTTTTGCATGGA
* **
26747 AATCTTTTCTCTTGCCCTATTTTCCTTAAAATCAAAGTTTATTTCTTAAATAAGACAAGCATAGA
260 AATCTTTTCTCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATAGA
* * ** *
26812 TTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACGAAAAATACATTCCCTTCATTCGGATG
325 TTCTCATAACAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAATACATTCCCTTCATTAAGATA
* * * *
26877 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACTATTTTTTATAGAATCAAA
390 CATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
* *
26942 GTTTGTACCTTAAGTAAGACAA
455 GTTTATACCTTAAATAAGACAA
* * * * *
26964 ACATGTATACTAATACTAATCTCCATCCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCT
1 ACATGAATACTAATACTAATCCCCAT--TCTTTAAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * * *
27029 TTAGGATACACGATATTGTTGCTTTCGTTTCACAAGAAGGCTTTT-TTCCCACCAATTTTTGTAA
64 TAAGGATACACAATATTGATGCCTTCGTTTCACAAGAAAGATTTTCTTCCCACCAAATTTTGTAA
* * * * *
27093 AGTCTAAGTTTGTGCCT-AAAATGAGACAAATATGGATTCTAGTAAAGATCTTCTTTCATTTTAT
129 AGTCTAAGTTCGTGCCTCAAAA-AAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTAT
* * *
27157 GATTAGGCACTATAAGCACATTCT-CTCATT-AGGATAAATGATATTGATGATTTTCTTTTGCAT
193 GATTAGGAACCATAAACACATTCTCCTCATTAAGG-TAAATGATATTGATGATTTTCTTTTGCAT
*
27220 GGAAATCTTTTCT-TTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGACAAGCAT
257 GGAAATCTTTTCTCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* *
27284 CGATTCTCGTAACAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAATACATTCCCTTCATTAAG
322 AGATTCTCATAACAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAATACATTCCCTTCATTAAG
*
27349 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
387 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC
*
27414 AAAGTTTATATCTTAAATAAGACAA
452 AAAGTTTATACCTTAAATAAGACAA
* *
27439 ACATGAATACTAATATTAATCCCCATTCTTTAAGGATTAGGCCCCATAAACATAGTCTTCTCATA
1 ACATGAATACTAATACTAATCCCCATTCTTTAAGGATTAGGCACCATAAACATAGTCTTCTCATA
27504 AG
66 AG
27506 TGTTAAGATT
Statistics
Matches: 479, Mismatches: 59, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
473 36 0.08
475 213 0.44
476 49 0.10
477 112 0.23
478 64 0.13
479 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (476 bp):
ACATGAATACTAATACTAATCCCCATTCTTTAAGGATTAGGCACCATAAACATAGTCTTCTCATA
AGGATACACAATATTGATGCCTTCGTTTCACAAGAAAGATTTTCTTCCCACCAAATTTTGTAAAG
TCTAAGTTCGTGCCTCAAAAAAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTATGAT
TAGGAACCATAAACACATTCTCCTCATTAAGGTAAATGATATTGATGATTTTCTTTTGCATGGAA
ATCTTTTCTCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATAGAT
TCTCATAACAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAATACATTCCCTTCATTAAGATAC
ATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
TTTATACCTTAAATAAGACAA
Found at i:27684 original size:23 final size:24
Alignment explanation
Indices: 27655--27705 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 24
27645 AGATAAGTTT
*
27655 AAATGTTTTTCAAGT-AATAATTC
1 AAATGTTTTTCAAATAAATAATTC
27678 AAATGTTTTTCAAATAAAATAATTC
1 AAATGTTTTTCAAAT-AAATAATTC
27703 AAA
1 AAA
27706 ATATTGATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 14 0.56
25 11 0.44
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (24 bp):
AAATGTTTTTCAAATAAATAATTC
Found at i:27835 original size:13 final size:13
Alignment explanation
Indices: 27817--27841 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27807 ATATTGCTTA
27817 GTATCGATACATT
1 GTATCGATACATT
27830 GTATCGATACAT
1 GTATCGATACAT
27842 GATCTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:27838 original size:33 final size:32
Alignment explanation
Indices: 27796--27859 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
27786 CACACCCAGA
*
27796 TGTATCGATATAT-ATTGCTTAGTATCGATACAT
1 TGTATCGATACATGA-T-CTTAGTATCGATACAT
*
27829 TGTATCGATACATGATCTTTGTATCGATACA
1 TGTATCGATACATGATCTTAGTATCGATACA
27860 CCATGAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 14 0.50
33 13 0.46
34 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATGATCTTAGTATCGATACAT
Found at i:28474 original size:34 final size:34
Alignment explanation
Indices: 28431--28556 Score: 147
Period size: 34 Copynumber: 3.8 Consensus size: 34
28421 GTGATTGAGG
*
28431 GGTTCTATCTTAGCTTG-AAAAAGATAGCGAGAGA
1 GGTTCTATCTTAGCTTGTGAAAAGATAG-GAGAGA
28465 GGTTCTATCTTAGCTTGTGAAAAGATAGTGA-AGA
1 GGTTCTATCTTAGCTTGTGAAAAGATAG-GAGAGA
*
28499 GGTTCTATCTTAACTTGTGAAAAGATA--AG-GA
1 GGTTCTATCTTAGCTTGTGAAAAGATAGGAGAGA
* * *
28530 CGTTCTATCTTAGCCT-TCAAAAGATAG
1 GGTTCTATCTTAGCTTGTGAAAAGATAG
28557 TATTGTAAGG
Statistics
Matches: 82, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.11
31 16 0.20
34 46 0.56
35 11 0.13
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (34 bp):
GGTTCTATCTTAGCTTGTGAAAAGATAGGAGAGA
Found at i:30081 original size:160 final size:157
Alignment explanation
Indices: 29422--31996 Score: 558
Period size: 159 Copynumber: 16.2 Consensus size: 157
29412 TTTTTTTTGT
* * * * *
29422 GATTAGGCACTATAAACACATTTTCCTCATTA-AGATGAAAGATATTTATGATTTTCTTTTGCAT
1 GATTAGGAACTATAAACACATTCTCCTCATTAGA-AT-AAAGATATTGATGATTTTC-TTCGCAA
* * * * *
29486 GAAAATCTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTAAAATAAGACAAGCAT
63 GAAAGTCTTTTCTTTTGCCCTATTTT-CATAAAATCAAAGTTTATCTCTTAAATAAGACAAACAT
* **
29551 CGATTCTTATAACAATCTCTATTC-TTTTCAA
127 GGATTCTCGTAACAATCTCTATTCATTTT-AA
* * * * ** * * **
29582 GATTGGGAACCAAAAACACATTC-CCTTCATTAGGATACAAGACCTTAATGCTTTGGTGTCGCAA
1 GATTAGGAACTATAAACACATTCTCC-TCATTAGAATA-AAGATATTGATGATTTTCT-TCGCAA
* * *
29646 GAAAAG-CTTTTC-TTTCCCCTATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
63 G-AAAGTCTTTTCTTTTGCCCTA-TTTTCATAAAATCAAAGTTTATCTCTTAAATAAGACAAACA
* ** * * * ** *
29709 TGAATAGTC-AAACTAACCCCCCTTCATTTTAG
126 TGGATTCTCGTAAC-AATCTCTATTCATTTTAA
* * * * * * * * *
29741 GATTAGGCA-TCATAAACATAGTATTCTCATTACG-ATACATGATATTGGTGCTTTGGT-TTCAC
1 GATTAGGAACT-ATAAACACATTCTCCTCATTA-GAATA-AAGATATTGATGATTT--TCTTCGC
* * * ** * * * * **
29803 AAGAAAGACTTTT-TTCCT-ACAAATTTTTATAAAGTCTAAGTTCATGC-CACAAATAAGACAAA
61 AAGAAAGTCTTTTCTT-TTGCCCTATTTTCATAAAATCAAAGTTTAT-CTCTTAAATAAGACAAA
* * * * **
29865 CAAGGATTCTAGTAATAATCTTTATTCATTTTGT
124 CATGGATTCTCGTAACAATCTCTATTCATTTTAA
* * *
29899 GACTAGGCACTATAAACACATTCTCCTCATTAGAATAAATGATATTGATGATTTTCTTCTGCATG
1 GATTAGGAACTATAAACACATTCTCCTCATTAGAATAAA-GATATTGATGATTTTCTTC-GCAAG
* *
29964 GAAGTCTTTTCTTTTGCCCTATTTTCATTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATG
64 AAAGTCTTTTCTTTTGCCCTATTTTCA-TAAAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* *
30029 GACTCTCGTAACAGTCTCTATTC-TTTTCAA
128 GATTCTCGTAACAATCTCTATTCATTTT-AA
* * * * * * **
30059 GATTGGGAACTAAAAACACATTC-CCTTCATTCGAATACAAGACATTGACGCTTTGGTGTCGCAA
1 GATTAGGAACTATAAACACATTCTCC-TCATTAGAATA-AAGATATTGATGATTTTCT-TCGCAA
* * * * * ** * *
30123 GAGAAG-CTTTT-ATTTCCCCCATTTTTGATAGAATCAAAGTTTGCCAT-TTAAATAAGATAAAT
63 GA-AAGTCTTTTCTTTTGCCCTA-TTTTCATAAAATCAAAGTTTATC-TCTTAAATAAGACAAAC
* ** * **
30185 ATGAATAGTCAT-ACTAATC-CTTATTC-TTTCCGA
125 ATGGATTCTCGTAAC-AATCTC-TATTCATTT-TAA
* * * *** * * * * * * *
30218 GATTAGGCACCATAAACATAGGATTCTCATAAGGATACACGATATTGAGGCCTTGGT-TTCGCAA
1 GATTAGGAACTATAAACACATTCTCCTCATTAGAATA-AAGATATTGATG-ATT-TTCTTCGCAA
* * * * * * * ** *
30282 AAAAGGC-TTTC-TTTCCACCAATTTTGGA-AAAGTCTAAGTTTATGC-CACAAATGAGACAAAC
63 GAAAGTCTTTTCTTTTGC-CCTATTTT-CATAAAATCAAAGTTTAT-CTCTTAAATAAGACAAAC
* ** * **
30343 ATGGATTCTAGTAATTATCT-TCATTTATTTTGT
125 ATGGATTCTCGTAACAATCTCT-ATTCATTTTAA
* * * * * * * * *
30376 GATTAGGCACTTTAAACACATTTTCCACATAAGCATAAATGATATTGATGATTTTTTTTTGCATG
1 GATTAGGAACTATAAACACATTCTCCTCATTAGAATAAA-GATATTGATGA-TTTTCTTCGCAAG
* * * * * * *
30441 AAAATCTTTTC-TTTGCCCCACTTTCCTTAAAATCAAAGTTTATCTCTAAAATAAGACAAGCATT
64 AAAGTCTTTTCTTTTGCCCTA-TTTTCATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* * *
30505 GATTCTTGTAACAGTCTCCATTC-TTTTCAA
128 GATTCTCGTAACAATCTCTATTCATTTT-AA
* * * * * ** * ***
30535 GATTGGGAACCAAAAACACATTC-CCTTCATTAGGATACATGACCTTGATG-CTTT-GGAGCAAG
1 GATTAGGAACTATAAACACATTCTCC-TCATTAGAATA-AAGATATTGATGATTTTCTTCGCAAG
** * * * *
30597 AAAAG-CTTTTCTTTCCCCCGT-TTTTGATAGAATCAAAGTTCATCTCGTAAATAAGACAAACAT
64 -AAAGTCTTTTCTTTTGCCC-TATTTTCATAAAATCAAAGTTTATCTCTTAAATAAGACAAACAT
** * * *
30660 -GATAGTC-AAACTAATC-CTCATTCTTTTTAG
127 GGATTCTCGTAAC-AATCTCT-ATTCATTTTAA
* * * * * * * * * * * *
30690 GATTAGGCACCATAAACATAGTGTTCTCATTAGGATACATGATATTGGTGCTTTGGT-TTCACAG
1 GATTAGGAACTATAAACACATTCTCCTCATTAGAATA-AAGATATTGATGATTT--TCTTCGCAA
* * * * * *
30754 GAAAG-C-CTT-TTTT-CCCATCAATTTTTATAAAGTCTAAGTTCATCTAC--AAATGAGACAAA
63 GAAAGTCTTTTCTTTTGCCC-T--ATTTTCATAAAATCAAAGTTTATCT-CTTAAATAAGACAAA
* * *** ***
30813 CAAGGATTCTAGTAGTGATCT-TCATTCATTTGGT
124 CATGGATTCTCGTAACAATCTCT-ATTCATTTTAA
* * * * * * *
30847 GACTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATG
1 GATTAGGAACTATAAACACATTCTCCTCATTAGAATAAA-GATATTGATGA-TTTTCTTCGCAAG
* * * ** * * *
30912 GAAGTCTTTTATCTCACCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATA
64 AAAGTCTTTTCTTTTGCCCTATTTT-CATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* * * * *
30977 GATTCTCGTAGCAATCCCCAATCATTTCAA
128 GATTCTCGTAACAATCTCTATTCATTTTAA
* * * * * * **
31007 GATTGGGAACTAAAAACACATTC-CCTTCATTCAG-ATACATGACACTGATGCTTTGGTGTCGCA
1 GATTAGGAACTATAAACACATTCTCC-TCATT-AGAATA-AAGATATTGATGATTTTCT-TCGCA
* * * * ** * * * *
31070 AGAAAAG-CTTTTATTTT-CCCCATTTTTGATAGAATCAAAGTTTGCCACTTAAATAGGATAAAT
62 AG-AAAGTCTTTTCTTTTGCCCTA-TTTTCATAAAATCAAAGTTTATCTCTTAAATAAGACAAAC
* ** * * * * *
31133 ATGAATAGTCAT-ACTAATCCCCAATC-TTTTCGA
125 ATGGATTCTCGTAAC-AATCTCTATTCATTTT-AA
* * * * * * *
31166 GATTAGGCACCATAAACATGGGATTCTCAT-AAT-G-ATACACA-ATATTGAGGCCTTGGTT-TT
1 GATTAGGAACTATAAACA---CATTCTCCTCATTAGAATA-A-AGATATTGATG-ATT--TTCTT
* * * * * * * ** *
31226 -GCAA-AAAGGGC-TTTC--TTCCCACCAGTTTTGGA-AAAGTCTAAGTTCATGC-CACAAATGA
58 CGCAAGAAA-GTCTTTTCTTTTGCC-CTA-TTTT-CATAAAATCAAAGTTTAT-CTCTTAAATAA
* * ** * **
31284 GACAAACAAGGATTCTAGTAATGATCT-TCATTTATTTTGT
118 GACAAACATGGATTCTCGTAACAATCTCT-ATTCATTTTAA
*** * * * ** *
31324 GATTAATCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATAATTTTCTTTTACATG
1 GATTAGGAACTATAAACACATTCTCCTCATTAGAATAAA-GATATTGATGATTTTC-TTCGCAAG
* * * * * *
31389 AAAATCTTTTC-TTTGCCCTATTTTCTTTAGAATCAAAGTTTATCTCTAAAATAAGACAAGCATC
64 AAAGTCTTTTCTTTTGCCCTATTTTC-ATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* *
31453 GATTCTTGTAACAATCTCAATTC-TTTTCAA
128 GATTCTCGTAACAATCTCTATTCATTTT-AA
* * * * * * ** * ** *
31483 GATTGGGAACCAAAAACACATTC-CCTTCCTTAGGATACATGACCTTGATGCTTTGGTGTCCCAA
1 GATTAGGAACTATAAACACATTCTCC-TCATTAGAATA-AAGATATTGATGATTTTCT-TCGCAA
* * * * * *
31547 GAAAAG-CTTTTCTTTCT-CCC-GTTTTGATAGAATCAAAGTTTGTCTCATAACTAAGACAAACA
63 G-AAAGTCTTTTCTTT-TGCCCTATTTTCATAAAATCAAAGTTTATCTCTTAAATAAGACAAACA
** ** * * * * * *
31609 TAAATAGTC-AAACTAGTCCCCATTCTTTTTAG
126 TGGATTCTCGTAAC-AATCTCTATTCATTTTAA
* * * * * * * * **
31641 GATTAGGCACCATAAACA-TTGTGTTCTCATTACAATAACATGATATTGGTGCTTTGGT-TTAAC
1 GATTAGGAACTATAAACACAT-TCTCCTCATTAGAATAA-A-GATATTGATGATTT--TCTTCGC
* * * * * * ** *
31704 AAGAAAGCCTTTT-TTCT-CACCAATTTTTATAAAGA-CTAAGTTTGTGC-CACAAATGAGACAA
61 AAGAAAGTCTTTTCTTTTGC-CCTATTTTCATAAA-ATCAAAGTTTAT-CTCTTAAATAAGACAA
* * * ** **
31765 ACAAGGATTGTAGTAATGATCT-TCATTCATTTTGT
123 ACATGGATTCTCGTAACAATCTCT-ATTCATTTTAA
* * * * *
31800 GACTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTCTGCATT
1 GATTAGGAACTATAAACACATTCTCCTCATTAGAATAAA-GATATTGATGATTTTCTTC-GCA-A
* * *
31865 G-AAGTCTTTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAA
63 GAAAGTCTTTTCTTTTGCCCTATTTT-CATAAAATCAAAGTTTATCTCTTAAATAAGACAAACAT
* * *
31929 AGATTCTCGTAACAGTCTATATTC-TTTTCAA
127 GGATTCTCGTAACAATCTCTATTCATTTT-AA
* * *
31960 GATTGGGAACTAAAAACACATTC-CCTTCATTCGAATA
1 GATTAGGAACTATAAACACATTCTCC-TCATTAGAATA
31997 CATGACTTTA
Statistics
Matches: 1711, Mismatches: 541, Indels: 326
0.66 0.21 0.13
Matches are distributed among these distances:
154 8 0.00
155 61 0.04
156 75 0.04
157 127 0.07
158 417 0.24
159 645 0.38
160 347 0.20
161 24 0.01
162 6 0.00
163 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (157 bp):
GATTAGGAACTATAAACACATTCTCCTCATTAGAATAAAGATATTGATGATTTTCTTCGCAAGAA
AGTCTTTTCTTTTGCCCTATTTTCATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATGGAT
TCTCGTAACAATCTCTATTCATTTTAA
Found at i:32185 original size:159 final size:158
Alignment explanation
Indices: 32012--32683 Score: 426
Period size: 159 Copynumber: 4.2 Consensus size: 158
32002 CTTTAATGCT
* *
32012 TTGGTGTCGCAAAAAAAGCTTTTATTTCCCCAATTTTTGATAGAATAAAAGTTTGCCACTTAAAT
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTTTGATAGAATAAAAGTTTGCCACTTAAAT
32077 AGGATAAATATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATGGGA
66 AGGATAAATATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATGGGA
32142 TTCTCATAAGGATACTGGATATTGAGGCC
131 TTCTCATAAGGATACT-GATATTGAGGCC
* ** *
32171 TTGGTTTCGCAAAAAAAGC-TTTCTTTCCACCAATTTTGGA-A-AAGTCTAAGCTCATGCCAC--
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCC-CCAATTTTTGATAGAA-TAAAAG-T-TTGCCACTT
* * * * ** *** **
32231 AAAT-GAGATAAACATGGAT--TCTAGTAATTATCTTCATT-TATTTTGTGATTAGGCACTTTAA
62 AAATAG-GATAAATATGAATAGTC-A-TACTAATCCCCATTCT-TTTCAAGATTAGGCACCATAA
***** * ***
32292 ACACATTTTTCTCATAAGGATAAATGATATTGATGATT
123 ACATGGGATTCTCATAAGGAT-ACTGATATTGA-GGCC
** * ** * * * *** * * ** * *
32330 TTCATTT-ACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTAAAAT
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTTTGATAGAATAAAAGTTTGCCACTTAAAT
* * * * * * * * *
32394 AAGATAAGCAT-TGATTCTTGT-A-AC-AGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACA-
66 AGGATAA--ATATGA--ATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACAT
* * ** * *
32454 --CATTCCCTTCATTAGGATACATGACGTTGACGCT
127 GGGATT--C-TCATAAGGATAC-TGATATTGAGGCC
* * * ** *
32488 TTGGTGTCGCAAGAAAAGCTTTTTTTTCCCCCGTTTTTTATAGAATAAAAGTTTGCCACTTAAAT
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTTTGATAGAATAAAAGTTTGCCACTTAAAT
* *
32553 AGGATAAATATGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAGGCAGCATAAACATGGGA
66 AGGATAAATATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATGGGA
*
32618 TTCTCATAAGGATACACGATATTGAGGCC
131 TTCTCATAAGGATAC-TGATATTGAGGCC
32647 TTGGTTTCGCAAAAAAAGC-TTTCTTTCCACCAATTTT
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCC-CCAATTTT
32684 GGAAAATTCT
Statistics
Matches: 367, Mismatches: 110, Indels: 72
0.67 0.20 0.13
Matches are distributed among these distances:
156 7 0.02
157 11 0.03
158 113 0.31
159 216 0.59
160 13 0.04
161 1 0.00
162 5 0.01
164 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (158 bp):
TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTTTGATAGAATAAAAGTTTGCCACTTAAAT
AGGATAAATATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATGGGA
TTCTCATAAGGATACTGATATTGAGGCC
Found at i:32304 original size:158 final size:156
Alignment explanation
Indices: 32012--32800 Score: 396
Period size: 159 Copynumber: 5.0 Consensus size: 156
32002 CTTTAATGCT
* * * *
32012 TTGGTGTCGCAAAAAAAGCTTTTATTTCCCCAATTTTTGATAGAATAAAAGTT--TGCCACTTAA
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTTGGA-A-AATCAAAGTTCATGCCAC--AA
* * * * ** * *
32075 AT-AGGATAAATATGAATAGTC-A-TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACA
62 ATGA-GATAAACATGGAT--TCTAGTAATTATCTTCATTCTTTTCGAGATTAGGCACTATAAACA
*****
32137 TGGGATTCTCATAAGGATACTGGATATTGAGGCC
124 CATTTTTCTCATAAGGATACT-GATATTGAGGCC
* *
32171 TTGGTTTCGCAAAAAAAGC-TTTCTTTCCACCAATTTTGGAAAAGTCTAAGCTCATGCCACAAAT
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCC-CCAATTTTGGAAAA-TCAAAGTTCATGCCACAAAT
* * *
32235 GAGATAAACATGGATTCTAGTAATTATCTTCATT-TATTTTGTGATTAGGCACTTTAAACACATT
64 GAGATAAACATGGATTCTAGTAATTATCTTCATTCT-TTTCGAGATTAGGCACTATAAACACATT
* ***
32299 TTTCTCATAAGGATAAATGATATTGATGATT
128 TTTCTCATAAGGAT-ACTGATATTGA-GGCC
** * ** * * * ** *
32330 TTCATTT-ACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTAT-CTCTA-AA
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTT--GGAAAATCAAAGTTCATGC-C-ACAA
* * * * * * * * * *
32392 ATAAGATAAGCATTGATTCTTGTAA-CAGTC-TCTATTCTTTTCAAGATTGGGAACCAAAAACAC
62 ATGAGATAAACATGGATTCTAGTAATTA-TCTTC-ATTCTTTTCGAGATTAGGCACTATAAACAC
** * ** * *
32455 A-TTCCCTTCATTAGGATACATGACGTTGACGCT
125 ATTTTTC-TCATAAGGATAC-TGATATTGAGGCC
* * * ** ** *
32488 TTGGTGTCGCAAGAAAAGCTTTTTTTTCCCCCGTTTTTTATAGAATAAAAGTT--TGCCACTTAA
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTTGGA-A-AATCAAAGTTCATGCCAC--AA
* * * * **
32551 AT-AGGATAAATATGAATAGTC-A-TACTAATCCCCATTCTTTTCGAGATTAGGCAGC-ATAAAC
62 ATGA-GATAAACATGGAT--TCTAGTAATTATCTTCATTCTTTTCGAGATTAGGCA-CTATAAAC
***** *
32612 ATGGGATTCTCATAAGGATACACGATATTGAGGCC
123 ACATTTTTCTCATAAGGATAC-TGATATTGAGGCC
*
32647 TTGGTTTCGCAAAAAAAGC-TTTCTTTCCACCAATTTTGGAAAATTCTAAGTTCATGCCACAAAT
1 TTGGTTTCGCAAAAAAAGCTTTTCTTTCC-CCAATTTTGGAAAA-TCAAAGTTCATGCCACAAAT
* * * *
32711 GAGATAAACATGGATTCTAGTAATTATCTTCATT-TATTTTGTGGTTAGGCACTTTAAACACATT
64 GAGATAAACATGGATTCTAGTAATTATCTTCATTCT-TTTCGAGATTAGGCACTATAAACACATT
* *
32775 TTCCTCATAAGGATAAATGATATTGA
128 TTTCTCATAAGGAT-ACTGATATTGA
32801 TGATTTTCTT
Statistics
Matches: 463, Mismatches: 123, Indels: 89
0.69 0.18 0.13
Matches are distributed among these distances:
156 5 0.01
157 14 0.03
158 187 0.40
159 233 0.50
160 22 0.05
161 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (156 bp):
TTGGTTTCGCAAAAAAAGCTTTTCTTTCCCCAATTTTGGAAAATCAAAGTTCATGCCACAAATGA
GATAAACATGGATTCTAGTAATTATCTTCATTCTTTTCGAGATTAGGCACTATAAACACATTTTT
CTCATAAGGATACTGATATTGAGGCC
Found at i:35539 original size:475 final size:476
Alignment explanation
Indices: 28817--37252 Score: 9838
Period size: 476 Copynumber: 17.8 Consensus size: 476
28807 TGAGCTTACA
* * * * * *
28817 ATAAGGATACACAACATTGGTGCTTTGGTTTCACAAGAAAGGCATTATTCCTACCAATTTTTGTA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * * * * * * * *
28882 AAGTCTAAGCTCGTGCCTCAAATAAGACAAATATGGATTCTAGTAATGATCTTCTTTCCTTTTAT
66 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * *
28947 GATTAGGCACTATAAACACATTCTCCTCAATAGGATAAAAGATATTAATGATTTTCTTTTGCATG
131 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
** * * * * * *
29012 GAAATCTTTTCTTTGCCCTAAATTCATTAAAATCAAAGTTCATCCCTTAAATAGGACAAACATCA
196 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATCG
* * * * *
29077 ATTCTCATAACAATCTCCATTCTTTCCAAGATTGAGAACCAAAAACACATTCTCC-TCAATAGGA
261 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTC-CCTTCATTAGGA
* * * * * * *
29141 TAGATGATATTGAAGCTTTGGTGTCACAAGAAAAGCTTTTCATT-CACCATTTCTGATAGAATCA
325 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCA
* * * *
29205 AAGTTTGCCACTTAAATAGGACAAATATGAATAGTCATACTAATCTCCATTCTTTTC-GAGATTA
390 AAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATTA
29269 GGCACCA-AAAGCATAGGATTCTC
454 GGCACCATAAA-CATAGGATTCTC
* * ** * * * *
29292 ATAAGGATACACGATATTGAGGCCTTGGTTTTGCAAAAAAGGCTTTCTTCCCACCAATTTTGGAA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* **
29357 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTGATGATCTTCATTTTTTTTGT
66 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * *
29422 GATTAGGCACTATAAACACATTTTCCTCATTAAGATGAAA-GATATTTATGATTTTCTTTTGCAT
131 GATTAGGCACTATAAACACATTCTCCTCATTAGGAT-AAATGATATTGATGATTTTCTTTTGCAT
* * *
29486 GAAAATCTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTAAAATAAGACAAGCAT
195 GGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAT
** * *
29551 CGATTCTTATAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
259 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * *
29616 ATACAAGACCTTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCTATTTTTGATAGAATC
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATC
** * * *
29681 AAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCAAACTAACCCCCCTTCATTTT-AGGATT
389 AAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTCAGGATT
* *
29745 AGGCATCATAAACATAGTATTCTC
453 AGGCACCATAAACATAGGATTCTC
* * * * * * * *
29769 ATTACGATACATGATATTGGTGCTTTGGTTTCACAAGAAAGACTTTTTTCCTACAAATTTTTATA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * *
29834 AAGTCTAAGTTCATGCCACAAATAAGACAAACAAGGATTCTAGTAATAATCTTTATTCATTTTGT
66 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * *
29899 GACTAGGCACTATAAACACATTCTCCTCATTAGAATAAATGATATTGATGATTTTCTTCTGCATG
131 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * *
29964 GAAGTCTTTTCTTTTGCCCTATTTTCATTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATG
196 GAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATC
* * * * *
30029 GACTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTCGAA
260 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * *
30094 TACAAGACATTGACGCTTTGGTGTCGCAAGAGAAGCTTTTATTTCCCCCATTTTTGATAGAATCA
325 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCA
* * ** *
30159 AAGTTTGCCAT-TTAAATAAGATAAATATGAATAGTCATACTAATCCTTATTC-TTTCCGAGATT
390 AAGTTTGCC-TCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATT
30222 AGGCACCATAAACATAGGATTCTC
453 AGGCACCATAAACATAGGATTCTC
* * * * * *
30246 ATAAGGATACACGATATTGAGGCCTTGGTTTCGCAAAAAAGGCTTTCTTT-CCACCAATTTTGGA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTTCCCACCAATTTTTGT
* * * *
30310 AAAGTCTAAGTTTATGCCACAAATGAGACAAACATGGATTCTAGTAATTATCTTCATTTATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * * * * *
30375 TGATTAGGCACTTTAAACACATTTTCCACATAAGCATAAATGATATTGATGATTTTTTTTTGCAT
130 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * *
30440 GAAAATCTTTTCTTTGCCCCACTTTCCTTAAAATCAAAGTTTATCTCTAAAATAAGACAAGCATT
195 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATC
*
30505 GATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
260 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * *
30570 TACATGACCTTGATGCTTT-G-G-AGCAAGAAAAGCTTTTCTTTCCCCCGTTTTTGATAGAATCA
325 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCA
*** * * * *
30632 AAGTTCATCTCGTAAATAAGACAAACATG-ATAGTCAAACTAATCCTCATTCTTTTTAGGATTAG
390 AAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAG
30696 GCACCATAAACATAGTG-TTCTC
455 GCACCATAAACATAG-GATTCTC
* * * * * * *
30718 ATTAGGATACATGATATTGGTGCTTTGGTTTCACAGGAAAGCCTTTTTTCCCATCAATTTTTATA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * *
30783 AAGTCTAAGTTCAT-CTACAAATGAGACAAACAAGGATTCTAGTAGTGATCTTCATTCATTTGGT
66 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * *
30847 GACTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATG
131 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * ** *
30912 GAAGTCTTTTATCTCACCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATA
196 GAAATCTTTTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATC
* * * * * *
30977 GATTCTCGTAGCAATCCCCAATCATTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTCA-G
260 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT-AGG
* * *
31041 ATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTTCCCCATTTTTGATAGAATC
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATC
* * * * *
31106 AAAGTTTGCCACTTAAATAGGATAAATATGAATAGTCATACTAATCCCCAATCTTTTC-GAGATT
389 AAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATT
*
31170 AGGCACCATAAACATGGGATTCTC
453 AGGCACCATAAACATAGGATTCTC
* * * * ** * * * *
31194 ATAATGATACACAATATTGAGGCCTTGGTTTTGCAA-AAAGGGCTTTCTTCCCACCAGTTTTGGA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA-GGCTTTTTTCCCACCAATTTTTGT
*
31258 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTTATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
** * * *
31323 TGATTAATCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATAATTTTCTTTTACAT
130 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * *
31388 GAAAATCTTTTCTTTGCCCTATTTTCTTTAGAATCAAAGTTTATCTCTAAAATAAGACAAGCATC
195 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATC
* * * *
31453 GATTCTTGTAACAATCTCAATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCCTTAGGA
260 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * *
31518 TACATGACCTTGATGCTTTGGTGTCCCAAGAAAAGCTTTTCTTTCTCCC-GTTTTGATAGAATCA
325 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCA
* * * * * * *
31582 AAGTTTGTCTCATAACTAAGACAAACATAAATAGTCAAACTAGTCCCCATTCTTTTTAGGATTAG
390 AAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAG
*
31647 GCACCATAAACATTGTG-TTCTC
455 GCACCATAAACATAG-GATTCTC
* ** * * * * * *
31669 ATTACAATAACATGATATTGGTGCTTTGGTTTAACAAGAAAGCCTTTTTTCTCACCAATTTTTAT
1 ATAAGGAT-ACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* ** *
31734 AAAGACTAAGTTTGTGCCACAAATGAGACAAACAAGGATTGTAGTAATGATCTTCATTCATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * *
31799 TGACTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTCTGCAT
130 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * *
31864 TGAAGTCTTTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAA
195 GGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAT
* ** * * *
31929 AGATTCTCGTAACAGTCTATATTCTTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTCGA
259 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * * *
31994 ATACATGACTTTAATGCTTTGGTGTCGCAAAAAAAGCTTTTATTTCCCCAATTTTTGATAGAATA
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATC
* * * * *
32059 AAAGTTTGCCACTTAAATAGGATAAATATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
389 AAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
*
32124 GGCACCATAAACATGGGATTCTC
454 GGCACCATAAACATAGGATTCTC
** * * * * * * *
32147 ATAAGGATACTGGATATTGAGGCCTTGGTTTCGCAAAAAAAGCTTTCTTT-CCACCAATTTTGGA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTTCCCACCAATTTTTGT
* * * * *
32211 AAAGTCTAAGCTCATGCCACAAATGAGATAAACATGGATTCTAGTAATTATCTTCATTTATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * * * * *
32276 TGATTAGGCACTTTAAACACATTTTTCTCATAAGGATAAATGATATTGATGATTTTCATTTACAT
130 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * *
32341 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTAAAATAAGATAAGCATT
195 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATC
* *
32406 GATTCTTGTAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
260 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * * *
32471 TACATGACGTTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCCCCGTTTTTTATAGAATAA
325 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCA
* * * *
32536 AAGTTTGCCACTTAAATAGGATAAATATGAATAGTCATACTAATCCCCATTCTTTTC-GAGATTA
390 AAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATTA
* *
32600 GGCAGCATAAACATGGGATTCTC
454 GGCACCATAAACATAGGATTCTC
* * * * * * *
32623 ATAAGGATACACGATATTGAGGCCTTGGTTTCGCAAAAAAAGCTTTCTTT-CCACCAATTTTGGA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTTCCCACCAATTTTTGT
* * * * *
32687 AAATTCTAAGTTCATGCCACAAATGAGATAAACATGGATTCTAGTAATTATCTTCATTTATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * * *
32752 TGGTTAGGCACTTTAAACACATTTTCCTCATAAGGATAAATGATATTGATGATTTTC-TTTGCAT
130 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * *
32816 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTTATCTCTAAAATAAGACAAGCAAT
195 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGC-AT
* * * *
32881 -GATTCTTGTAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACCTTCCATTCATTAGG
259 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * *
32945 ATACATGACCTTGATGCTTT-G-GT-GCAAGAAAAGATTTTTTTTCCCCCATTTTTGATAGAATC
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATC
* * * * * * *
33007 AAAGTTTGTCTCGTAAATAAGACAAACATGAATAGTCAAACTACTCCTCATGCTTTTTAGGATTA
389 AAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
33072 GGCACC---AACATAGTG-TTCTC
454 GGCACCATAAACATAG-GATTCTC
* * * * * * * ** * *
33092 TTTAGGATATATGACATTGGTGCTTTGGATTCACTGGAAAGCCTTTTTTCCCACCAATTTTTATA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * *
33157 AAGTCTAAGTTCAT-CTACAAATGAGACAAACAAGGATTATAGTAGTGATCTTCATTCATTTTGT
66 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * *
33221 GACTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATACTGATGATTTT-TTTCTGCAT
131 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT-TGCAT
* *
33285 GGAAGTCTTTTCTTTTGCCCTATTTTCCCTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAT
195 GGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAT
* * * * *
33350 TGATTCTCGTAGCAATCTCCATTCTTTTCAAAATTGGGAACTAAAAACACATTCCCTTCATTCA-
259 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT-AG
* * * *
33414 GATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCCCCATATTTGATAGGAT
323 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAAT
* * * * * *
33479 CAAAGTTTGCCACTAAAATAGGATAAATATGAATAGTCATACTAATCCTCATTCTTTTC-GAGAT
388 CAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GAT
*
33543 TAGGCACCGTAAACATAGGATTCTC
452 TAGGCACCATAAACATAGGATTCTC
* * * ** * ** * *
33568 ATAAGGATACACGATATTGAGGCCTCGGTTTTGCAA-AAAGTGCTTTCTTCCCACCGGTTTTGGA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAG-GCTTTTTTCCCACCAATTTTTGT
*
33632 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTTATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * * ** * *
33697 TGATTTA-TCACTATAAACACATTTTCCTCTTTAGGATAAATTTTATTGATAATTTTCTTTTACA
130 TGA-TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * * * **
33761 TGGAAATCTTTTTTTTGCCATATTTTCTTTAGAATGAAAGTTTATCTCAAAAATAAGACAAGCAT
194 TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAT
* ** * * *
33826 CGATTCTTGTAACAGTCTTAATTCTTTTCAAGATTAGGAACCAAAAACACATTCTCTTCCTTAGG
259 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * * *
33891 ATACATGACCTTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCTCCCGTTTCTGATAGATTC
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATC
* * * * * * *
33956 AAAGTTTGTCTTTTAACTAAGACAAACATGAATAGTCAAACTAGTCCCCGTTCTTTTTAGGATTA
389 AAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
*
34021 GGCACCATAAACATTGTG-TTCTC
454 GGCACCATAAACATAG-GATTCTC
* * ** * * * * * *
34044 TTTACAATAACATGATATTGGTGCTTTGGTTTAACAAGAAAGCCTTTTTTCTCACCAATTTTTAT
1 ATAAGGAT-ACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* ** * * *
34109 AAAGACTAAGTTTGTGTCACAAATGAGACAAACAAGGATTGTAGTAACGATCTTCATTCATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * *
34174 TGACTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTACTTCTGCAT
130 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * *
34239 GGAAGTCTTTTCTTTCGCCTTATTTTCCTTAAAATCAATGTTTATCTCTTAAATAAGACAAGCAT
195 GGAAATCTTTTCTTT-GCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCAT
* * * *
34304 TGAGTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAAAACACATTCCCTTCATTCA-
259 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT-AG
* * *
34368 GATATATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTAATTT-CCCCATTTTTGATAGAA
323 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCCCCATTTTTGATAGAA
* * * * * * * * *
34432 TCAAAGTTTGTCACCTAAGT-AGAATAAATATGAATAGTCATATTAATCCCTATTCTGTTC-GAG
387 TCAAAGTTTGCCTCTTAAATAAG-ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-G
*
34495 ATTAGG-ATTC-T---CATAGGATTCTC
450 ATTAGGCA-CCATAAACATAGGATTCTC
* * * * * * * * *
34518 ATAAAGATACATGATATTGAGGCCTTGGTTTCACAAAAAAGGCTTTCTTCACACCAATTTTGGAA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * *
34583 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAAGATTCTAGTAACGATCTTCATTTATTTTGT
66 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
*** * * *
34648 GATTAATTACTATAAACACATTTTCCTCATTATGATAAATGATATTGAAGATTTTCTTTTGCATG
131 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
** * * *
34713 GAAGCCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTATCTCTAAAATAAGACAAGCATCA
196 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATCG
* * * *
34778 ATTCTTGTAACAGTCT-C-TTCTTTTCAAGATTGGGATCCAAAAACAGATTCCCTTCGTTAGGAT
261 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * * * *
34841 GCATGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCCTCGTTTTTGGTAGAATCAA
326 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCAA
* * * * *
34905 AATTTGTCTCTTAAATAAGACAAACATAAATAGTCAAACTAATCCCCATTCTTTCCAGGATTAGG
391 AGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
**
34970 CACCATAAACATATTATTCTC
456 CACCATAAACATAGGATTCTC
* * * * * * ** *
34991 ATTAGGATACATGATATTGGTACTTTGGTTTCACAGGAAAGCCTTTTTTCCCATTAATTTTTATA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * *
35056 AAGTCTAAGTTCGTGCCACAAATGAGACAAACAAGGATTCTATTAATGATCTTCATTCATTTTAT
66 AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * *
35121 GACTAGGCACTATAAACATATTCTCCTAATTAGGATAAATGATATTGATGATTTTCTTCTGCATG
131 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * *
35186 GAAGTCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATCAGACAAGCATAG
196 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATCG
* * * *
35250 ATTCTCGCAACAGTTTCGATTCTTTTCAAAATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
261 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * ** * * * * *
35315 GCGTGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCATTCCACTATTTATAATAGAATCAA
326 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCAA
* ** * * * ** *
35380 AGGTTGCCTCTCCAATAGGACAAACATGAATAGGCAAACTAATCCCCATTCTTTTTGGGATTAAG
391 AGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
35445 CACCATAAACATAGGATTCTC
456 CACCATAAACATAGGATTCTC
* ** * *
35466 ATAAGGATACATC-ATATTGATGCCTTGGTTTCGTAAAAAAGGCTTTTTTCTCACCAATTTTTGT
1 ATAAGGATACA-CGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* * * *
35530 AACGTCTAAGTTCATGCCACAATTGAGACAAACAAGGATCCTAGTAATGATCTTCCTTCATTTTG
65 AAAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * * * *
35595 TGATTAGGCACTGTAAACACATTCTCCACTTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
130 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * *
35660 GGAAATCTTTTCTTTGCCCTATTGTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
195 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATC
* * * * * *
35725 GATTCTTGAAACAGTCTCTATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGA
260 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * ** *
35790 TACATGACATGGATGCTTTGGTGTTG-AAGGAAAAGCTTTTCTTTCCATCATTTTTGATAAAATC
325 TACATGACATTGATGCTTTGGTGTCGCAA-GAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATC
* * *
35854 AAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT-ATACTAATCCCTATT-ATTTCAGGATTA
389 AAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
* * ** *
35917 GTCACCATAAAAATAGTTTTCTT
454 GGCACCATAAACATAGGATTCTC
* * * *
35940 ATAATGATACACGATATTGACGCTTTGATTTCACAAGAAAGGCTTTGTTCCCCACCAATTTTTGT
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTTCCCACCAATTTTTGT
* * * * * *
36005 TAAGGCTAAGTT-AGTGCCTCAAATGAGATAAA-AATGGATTATAGCAATGATCTTCATTCATTT
65 AAAGTCTAAGTTCA-TGCCACAAATGAGACAAACAA-GGATTCTAGTAATGATCTTCATTCATTT
* * * * * * *
36068 TATGATTAAGCACTCTAAACACATTCT-CTACTTTAGGATAAATGATGTTGATGATTCTCTTTTA
128 TGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * * * *
36132 CGTGGAAATCTTTTCTTTACCCTATTTGCCTTAAAATTAAAGTTCATCTCTTAAATAGGACAACC
192 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGC
* * * * *
36197 ATCGATTCTCATTACAGTCTCCATTATTTTCAGGATTGGGAACTAAAAACACATTCCCTTCATTA
257 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * ** *
36262 GGATACATGACATGGATGCTTTGGTGTCG-TAGAAAAAGCTTTTCTTTCCATCATTTTTGATAAA
322 GGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAAGCTTTTCTTTCCCCCATTTTTGATAGA
* * *
36326 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT-ATACTAATCCCTATT-ATTTCAGGA
386 ATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* * ** *
36389 TTAGTCACCATAAAAATAGTTTTCTT
451 TTAGGCACCATAAACATAGGATTCTC
* * * *
36415 ATAATGATACACGATATTGAGGCTTTGATTTCACAAGAAAGGCTTTGTTCCCCACCAATTTTTGT
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTTCCCACCAATTTTTGT
* * * * * * *
36480 TAAGGCTAAGTT-AGTGCCTCAAATGAGATAAA-AATGGATTATAGCAATAATCTTCATTCATTT
65 AAAGTCTAAGTTCA-TGCCACAAATGAGACAAACAA-GGATTCTAGTAATGATCTTCATTCATTT
* * * * * *
36543 TGTGATTAAGCACTCTAAACACATTCT-CTACTTTAGGATAAATGATGTTGATGATTCTCTTTTA
128 TGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * * * *
36607 CGTGGAAATCTTTTCTTTACCCTATTTGCCTTAAAATTAAAGTTCATCTCTTAAATAGGACAACC
192 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGC
* * * * *
36672 ATCGATTCTCATTACAGTCTCCATTATTTTCAGGATTGGGAACTAAAAACACATTCCCTTCATTA
257 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * ** * *
36737 GGATACATGACATGGATGCTTTGGTGTCG-TAGAAAAAGCTTTTCTTTCCATCGTTTTTGATAAA
322 GGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAAGCTTTTCTTTCCCCCATTTTTGATAGA
* * * * * *
36801 ATCAAATTTTGTCTCTTAAATATGACAAACATGAATAGCCATTCTAATCCCCATTC-TTTCAAGA
386 ATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
* **
36865 TTAGGCACCATAAAAATAGTTTTCTC
451 TTAGGCACCATAAACATAGGATTCTC
* * * * * *
36891 ATAACGATACACGATATTGATGTTTTGATTTCACAAGAAGGGCTTTCTTCCCACCAATTTTTGCA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * * *
36956 AAGTCGT-ATTTCGTGCCTCAAATGAGACAAA-AATGGATTCTAGTAATGATCTTCATTTATTTT
66 AAGTC-TAAGTTCATGCCACAAATGAGACAAACAA-GGATTCTAGTAATGATCTTCATTCATTTT
* * * *
37019 GTGATTAAGCACTATAAACACATTATCCTCACTAGGATAAATGAGATTGATGATTTTCTCTTTG-
129 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGC
** * * * ** * ** * *
37083 AT-GAAATTCCTTTT-TTCACCCTATGTT-CTTAAAATTAAAATCCATCCCACAAATAAAATAAG
193 ATGGAAA-T-CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAG
* * * * *
37145 CATCGATTCTCGTAACAATCTCCATT-TTCTTCAATATTAGGAACCAAAAACACATTCCTTTCTT
256 CATCGATTCTCGTAACAGTCTCCATTCTT-TTCAAGATTGGGAACCAAAAACACATTCCCTTCAT
* *
37209 TAGGATACATAACATTGATGCTTTAGTGTCGCAAGAAAAGCTTT
320 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
37253 CCTCCCACCA
Statistics
Matches: 6856, Mismatches: 1003, Indels: 205
0.85 0.12 0.03
Matches are distributed among these distances:
468 99 0.01
469 152 0.02
470 199 0.03
471 117 0.02
472 443 0.06
473 520 0.08
474 280 0.04
475 1686 0.25
476 1697 0.25
477 1346 0.20
478 313 0.05
479 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
AAGTCTAAGTTCATGCCACAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATCG
ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCAA
AGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
CACCATAAACATAGGATTCTC
Found at i:36403 original size:159 final size:157
Alignment explanation
Indices: 35688--36880 Score: 415
Period size: 159 Copynumber: 7.5 Consensus size: 157
35678 CTATTGTCCT
** * * * ** * * *
35688 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGAAACAGTCTCTATTATTTTC
1 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATAGT-ATACAATCCCTATTA-TTTC
* * * *
35753 AGGATTGGGAACCT-AAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTTGA
63 AGGATTAGGCACCTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGT
*
35817 AGGAAAAGCTTTTCTTTCCATCATTTTTGA
128 AGAAAAAGCTTTTCTTTCCATCATTTTTGA
35847 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTATACTAATCCCTATTATTTCAG
1 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTATAC-AATCCCTATTATTTCAG
* * * ** * * * * * * * *
35912 GATTAGTCACCATAAAAATA-GTTTTCTT-ATAATGATACACGATATTGACGCTTTGATTTC--A
65 GATTAGGCACC-TAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGTA
* ** *
35973 CAAGAAAGGCTTTGT-TCCCCACCAATTTTTG-
129 GAA-AAA-GCTTT-TCTTTCCATC-ATTTTTGA
* ** * * * * * * * * *
36004 TTAAGGCTAAGTTAGTGC-CTCAAATGAGATAAAAATGGAT--TATAGCAATGATCTTCATTCAT
1 TAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGTATA-CAAT--CCCT-ATT-AT
* * * * * * * ** * * **
36066 TTTATGATTAAGCACTCT--AAACACATTCTCTACTTTAGGATAAATGATGTTGATGATTCTCTT
60 TTCAGGATTAGGCAC-CTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTT-TGGT
* * * * ****
36129 TTACGT-G-GAAATCTTTTCTTTACCCT-ATTTGCCT
123 GT-CGTAGAAAAAGCTTTTCTTT-CCATCATTTTTGA
* ** * * ** *
36163 TAAAATTAAAGTTCATCTCTTAAATAGGACAACCATCG-ATTCTCATTACAGTCTCC-ATTATTT
1 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATAGT-A-TACAATC-CCTATTA-TT
* *
36226 TCAGGATT-GGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTC
61 TCAGGATTAGGCACCTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTC
36290 GTAGAAAAAGCTTTTCTTTCCATCATTTTTGA
126 GTAGAAAAAGCTTTTCTTTCCATCATTTTTGA
36322 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTATACTAATCCCTATTATTTCAG
1 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTATAC-AATCCCTATTATTTCAG
* * * ** * * * * * * * *
36387 GATTAGTCACCATAAAAATA-GTTTTCTT-ATAATGATACACGATATTGAGGCTTTGATTTC--A
65 GATTAGGCACC-TAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGTA
* ** *
36448 CAAGAAAGGCTTTGT-TCCCCACCAATTTTTG-
129 GAA-AAA-GCTTT-TCTTTCCATC-ATTTTTGA
* ** * * * * * * * * *
36479 TTAAGGCTAAGTTAGTGC-CTCAAATGAGATAAAAATGGAT--TATAGCAATAATCTTCATTCAT
1 TAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGTATA-CAAT--CCCT-ATT-AT
* * * * * * ** * * **
36541 TT-TGTGATTAAGCACTCT--AAACACATTCTCTACTTTAGGATAAATGATGTTGATGATTCTCT
60 TTCAG-GATTAGGCAC-CTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTT-TGG
* * * * ****
36603 TTTACGT-G-GAAATCTTTTCTTTACCCT-ATTTGCCT
122 TGT-CGTAGAAAAAGCTTTTCTTT-CCATCATTTTTGA
* ** * * ** *
36638 TAAAATTAAAGTTCATCTCTTAAATAGGACAACCATCG-ATTCTCATTACAGTCTCC-ATTATTT
1 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATAGT-A-TACAATC-CCTATTA-TT
* *
36701 TCAGGATT-GGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTC
61 TCAGGATTAGGCACCTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTC
*
36765 GTAGAAAAAGCTTTTCTTTCCATCGTTTTTGA
126 GTAGAAAAAGCTTTTCTTTCCATCATTTTTGA
* * * * * *
36797 TAAAATCAAATTTTGTCTCTTAAATATGACAAACATGAATAGCCATTCTAATCCCCATTCTTTCA
1 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG-TATAC-AATCCCTATTATTTCA
*
36862 AGATTAGGCACCATAAAAA
64 GGATTAGGCACC-TAAAAA
36881 TAGTTTTCTC
Statistics
Matches: 722, Mismatches: 230, Indels: 163
0.65 0.21 0.15
Matches are distributed among these distances:
155 19 0.03
156 8 0.01
157 177 0.25
158 117 0.16
159 354 0.49
160 29 0.04
161 6 0.01
162 8 0.01
163 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTATACAATCCCTATTATTTCAGG
ATTAGGCACCTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGTAGA
AAAAGCTTTTCTTTCCATCATTTTTGA
Found at i:38288 original size:789 final size:787
Alignment explanation
Indices: 36577--38331 Score: 1651
Period size: 789 Copynumber: 2.2 Consensus size: 787
36567 TCTCTACTTT
* * * * * * ** * *
36577 AGGATAAATGATGTTGATGA-TTCTCTTTTACGTGGAAATCTTTTCTTTACCCTATTTGCCTTAA
1 AGGATAAATGATATTGATGACTT-TCGTTTGCATAGAAAGCTTTTCTTCCCCCAATTT-TCTTAA
* * * ** * * * * * *
36641 AATTAAAGTTCATCTCTTAAATAGGACAACCATCGATTCTCATTACA-GTCTCCATTATTTTCAG
64 AATCAAAGTTCATCTCTCAAAGAACACAAACATCAATTCT-AGTAAATGTCTCCATTCTTTTCAA
* * * * * *
36705 GATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGTAGA
128 GATTAGGCACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTATCGAAGA
* * * *
36770 AAAAGCTTTTCTTTCCATCGTTTTTGATAAAATCAAATTTTGTCTCTTAAATATGACAAACATGA
193 AAAAGCTTTTCTTTCCATCGCTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * *
36835 ATAGCCATTCTAATCCCCATTCTTTCAAGATTAGGCACCATAAAAATAGTTTTCTCATAACGATA
258 ATAGCCATACTAAACCCCATTCTTTCAAGATTAGGCACCATAAAAATAGTCTTCTCATAACGATA
* * * *
36900 CACGATATTGATGTTTTGATTTCACAAGAAGGGCTTTCTTCCCACCAATTTTTGCAAAGTCGTAT
323 CACGATATTGATGCTTTGATTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCGTAG
* *
36965 TTCGTGCCTCAAATGAGACAAAAATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAAGCA
388 TTCGTGCCGCAAATGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCA
* * *
37030 CTATAAACACATTATCCTCACTAGGATAAATGAGATTGATGATTTTCTCTTTGATGAAATTCCTT
453 CTATAAACACATTATCCTCACTAGGATAAATGACATTAATGATTTTCTCTTTGATGAAAATCCTT
*
37095 TTTTCACCCTATGTTCTTAAAATTAAAATCCATCCCACAAATAAAATAAGCATCGATTCTCGTAA
518 TTTTCACCCTATGTTCTTAAAATCAAAATCCATCCCACAAATAAAATAAGCATCGATTCTCGTAA
* * *
37160 CAATCTCCATTTTCTTCAATATTAGGAACCAAAAACACATTCCTTTCTTTAGGATACATAACATT
583 CAATCTCCATTTTCTTCAAGATTAGGAACCAAAAAAACATTCCTTTCATTAGGATACATAACATT
* ** * *
37225 GATGCTTTAGTGTCGCAAGAAAAGCTTTCCTCCCACCAATTTTGGTAAAGTATTTCATTCCCCAA
648 GATGCTTTAGTGTCGCAAGAAAAGCTTTCCTCCCACCAATTTTGATAAACCATTGCACTCCCCAA
* * * * * * ** * *
37290 ATGAGACAAACAAGGATTCTAGTAATGATCTTCTTTCTGTTTATGATTAGGTGCTATAGACACAT
713 ATGAGACAAACAAGAATTCTAGTAATAATCTCCTTTCTATTCAGGATTAGGCACCATAGACACAG
* *
37355 TGTCCTCATT
778 TATCCTCATA
* * * *
37365 AGGATAAATGATATTGATGATTTTCGTTTGCATAGAAATCTTTTCTTCTCCCTATTTTCCTTAAA
1 AGGATAAATGATATTGATGACTTTCGTTTGCATAGAAAGCTTTTCTTCCCCCAATTTT-CTTAAA
* * * * * * * *
37430 ATCAAAGTTTATCTCTTAAATAACAGAAGCTTCAATTCTTGTAACTGTCTCCATTCTTTTCAAGA
65 ATCAAAGTTCATCTCTCAAAGAACACAAACATCAATTCTAGTAAATGTCTCCATTCTTTTCAAGA
* * *
37495 TTAGG-AGCCAAAAACACTTTCCCTTCATTAGGATACATGACATTGATGCTTTGTTATTGCAAG-
130 TTAGGCA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTATCG-AAGA
* *
37558 AAAAGCTTTTCTTTCCATCGCTTTTGATAAAGTCAAAGTTTGTGTCTTAAATAAGACAAACAAGA
193 AAAAGCTTTTCTTTCCATCGCTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * * * *
37623 ATA-CTTATACTAAACCCCATTCTTATTAGGATTCA-GCACCATAAACATAGTCTTCTCATTA-G
258 ATAGC-CATACTAAACCCCATTCTT-TCAAGATT-AGGCACCATAAAAATAGTCTTCTCATAACG
* * *
37685 AATACACGATATTGGTGCTTTGGTTTCACAAAAAAGGCTTT-TTACCCACCAATTTTTGTAAAGT
320 -ATACACGATATTGATGCTTTGATTTCACAAAAAAGGCTTTCTT-CCCACCAATTTTTGCAAAGT
* *
37749 C-TAAGTTCGTGCCGCAAATGAGCCAAACATGGATTCTAGTAATTG-TCTTCATTCATTTTGTGA
383 CGT-AGTTCGTGCCGCAAATGAGACAAAAATGGATTCTAGTAA-TGATCTTCATTCATTTTGTGA
* * * * * * * *
37812 TTAGGCGCTATAAACACGTTCTCCTTATTATGATAAATGACATTAATGTTTTTCT-TTTGCATGA
446 TTAAGCACTATAAACACATTATCCTCACTAGGATAAATGACATTAATGATTTTCTCTTTG-ATGA
** * * ** ** ** * *
37876 AAAT-CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATTTCTTAATTATGAA-AAGCATC
510 AAATCCTTTT-TTCACCCTATGTTC-TTAAAATCAAAATCCATCCCACAAATA-AAATAAGCATC
* * * * *
37939 GATTCTCGTACCAATCTCTATTTTTTTCAAGATTGGGAACCAAAAAAATATTTCC-TTCATTAGG
572 GATTCTCGTAACAATCTCCATTTTCTTCAAGATTAGGAACCAAAAAAACA-TTCCTTTCATTAGG
* * ** * *
38003 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCC-CCATTTTTGATAGAACC
636 ATACATAACATTGATGCTTTAGTGTCGCAAGAAAAGC-TTTCCTCCCACCAATTTTGATA-AACC
** *** * * *
38067 ATTGC-CT-CTTAAAT-AGGACAAATGTGAATAGTC-A-TACTAATC-CCTATTTTATTCGGGAT
699 ATTGCACTCCCCAAATGA-GACAAACAAGAAT--TCTAGTAATAATCTCCT-TTCTATTCAGGAT
** * *
38126 TAGGCACCATTA-ACTTAGTATTCTGATA
760 TAGGCACCA-TAGACACAGTATCCTCATA
* *
38154 AGGATCAATGATATTGATG-CTTTGGTTTCGCA-AGAAAGGC-TTTCTTCCCACCAATTTT-TGT
1 AGGATAAATGATATTGATGACTTTCGTTT-GCATAGAAA-GCTTTTCTTCCC-CCAATTTTCT-T
** * * * ** ***
38215 AAGGTCTAAGTTCGTGC-CTCAAAGAAGACAAACATGGATTCTAGTAAATGATCTTTTTTCATTT
62 AAAATCAAAGTTCAT-CTCTCAAAGAACACAAACATCAATTCTAGTAAATG-TCTCCATTC-TTT
* * * * *
38279 T-ACGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATG
124 TCAAGATTAGGCACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATG
38332 ATTTTCTTTT
Statistics
Matches: 782, Mismatches: 152, Indels: 65
0.78 0.15 0.07
Matches are distributed among these distances:
787 5 0.01
788 299 0.38
789 323 0.41
790 135 0.17
791 20 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (787 bp):
AGGATAAATGATATTGATGACTTTCGTTTGCATAGAAAGCTTTTCTTCCCCCAATTTTCTTAAAA
TCAAAGTTCATCTCTCAAAGAACACAAACATCAATTCTAGTAAATGTCTCCATTCTTTTCAAGAT
TAGGCACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTATCGAAGAAAA
AGCTTTTCTTTCCATCGCTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATA
GCCATACTAAACCCCATTCTTTCAAGATTAGGCACCATAAAAATAGTCTTCTCATAACGATACAC
GATATTGATGCTTTGATTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCGTAGTTC
GTGCCGCAAATGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTA
TAAACACATTATCCTCACTAGGATAAATGACATTAATGATTTTCTCTTTGATGAAAATCCTTTTT
TCACCCTATGTTCTTAAAATCAAAATCCATCCCACAAATAAAATAAGCATCGATTCTCGTAACAA
TCTCCATTTTCTTCAAGATTAGGAACCAAAAAAACATTCCTTTCATTAGGATACATAACATTGAT
GCTTTAGTGTCGCAAGAAAAGCTTTCCTCCCACCAATTTTGATAAACCATTGCACTCCCCAAATG
AGACAAACAAGAATTCTAGTAATAATCTCCTTTCTATTCAGGATTAGGCACCATAGACACAGTAT
CCTCATA
Found at i:39590 original size:159 final size:159
Alignment explanation
Indices: 39379--42788 Score: 780
Period size: 159 Copynumber: 21.5 Consensus size: 159
39369 GGGTGCCTAA
* * * * * * * * *
39379 AACACATTC-CCTTCATTAGGATACTTGACAATGACGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
* * ** *
39443 TCCACCATTTTTGATGGAATCAAAGCTTGCCTCTTAAATAGGGGAAACATGAATAGTCATACTAA
66 TCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCATACTAA
* * *
39508 ACCCCATTCTTTTCGAGATTAGGTGCCAT
131 TCTCCATTCTTTTCGAGATTAGGTACCAT
* * * * * *
39537 AA-ACATTCTCTTTTCATTAGGAAACATAATATCGGTGCTTTAGTTTCCCAAGAAAGGC-ATT-T
1 AACACATTCTC-TTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCT
* * * * *
39599 TTCTCACCAATTTTTGA--GAAGTCTAAGTTTGT-TCCTCAAAT-GAGATAAACATGGATTCT-A
65 TTC-CACC-ATTTTTGATGGAA-TCAAAGTTTGTCT-CTTAAATAG-GACAAACATGAATACTCA
* ** * * * * * *
39659 GTAGTGTTCTTCTTTAATTTTAG-GATTAGGCACTAT
125 -TACTAATCTCCATT-CTTTTCGAGATTAGGTACCAT
* * * ** * * * *
39695 AAACACATTCTC-CTCAATAGGATAA-ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
1 -AACACATTCTCTTTCATTAGGA-AACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTC
* * * * * * * *
39758 TTTTCC-CTATTTTCT-TTAGAATCAAAGTTTATCTCTGAAATAAGACAAACATCG-ATTCTCGT
64 -TTTCCACCATTTT-TGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACAT-GAATACTCAT
* * ** *
39820 AGC-AGTCTCCATTCTTTTCAAGATTAGAAACCAAA
126 A-CTAATCTCCATTCTTTTCGAGATTAGGTACC-AT
* * * * *
39855 AACACATTCTCTTT-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
* * *
39919 TCCACCGTTTTTTATGGAATCAAAGTTTGTCTCTTAAATTA-GACAAACATGAATACTCACACTA
66 TCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAA-TAGGACAAACATGAATACTCATACTA
* *
39983 ATCCCCATTCTTTTCGAGATTAGGTGCCAT
130 ATCTCCATTCTTTTCGAGATTAGGTACCAT
* * * * * *
40013 AA-ACATTCTCTTTTCATTAGGAAACATAATATCGGTGCTTTAGTTTCCCAAGAAAGGC-ATT-T
1 AACACATTCTC-TTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCT
* * * * *
40075 TTCTCACCAATTTTTGA--GAAGTCTAAGTTTGT-TCCTCAAAT-GAGATAAACATGGATTCT-A
65 TTC-CACC-ATTTTTGATGGAA-TCAAAGTTTGTCT-CTTAAATAG-GACAAACATGAATACTCA
* ** * * * * * *
40135 GTAGTGTTCTTCTTTAATTTTAG-GATTAGGCACTAT
125 -TACTAATCTCCATT-CTTTTCGAGATTAGGTACCAT
* * * ** * * * *
40171 AAACACATTCTC-CTCAATAGGATAA-ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
1 -AACACATTCTCTTTCATTAGGA-AACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTC
* * * * * * * * *
40234 TTTTCC-CTATTTTCT-TTAGAATCAAAGTTTATCTCTGAAATAAGACAAACATCAATTCTCGTA
64 -TTTCCACCATTTT-TGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCATA
* * ** *
40297 GC-AGTCTCCATTCTTTTCAAGATTAGAAACCAAA
127 -CTAATCTCCATTCTTTTCGAGATTAGGTACC-AT
* * * * * *
40331 AACACATTCTCTTT-ATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTATT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
* * *
40395 TCCACCATTTTTTATGGAATCAAAGTTTGTCTCTTAAATTA-GACAAATATGAATACTCACACTA
66 TCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAA-TAGGACAAACATGAATACTCATACTA
* *
40459 ATCCCCATTCTTTTCGAGATTAGGTGCCAT
130 ATCTCCATTCTTTTCGAGATTAGGTACCAT
* * * * * *
40489 AA-ACATTCTCTTTTCATTAGGAAACATAATATCGGTGCTTTAGTTTCCCAAGAAAGGC-ATT-T
1 AACACATTCTC-TTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCT
* * * * *
40551 TTCTCACCAATTTTTGA--GAAGTCTAAGTTTGT-TCCTCAAAT-GAGATAAACATGGATTCT-A
65 TTC-CACC-ATTTTTGATGGAA-TCAAAGTTTGTCT-CTTAAATAG-GACAAACATGAATACTCA
* ** * * * * * *
40611 GTAGTGTTCTTCTTTAATTTTAG-GATTAGGCACTAT
125 -TACTAATCTCCATT-CTTTTCGAGATTAGGTACCAT
* * * ** * ** * *
40647 AAACACATTCTC-CTCAATAGGATAA-ATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTC
1 -AACACATTCTCTTTCATTAGGA-AACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTC
* * * * * * * *
40710 TTTTCC-CTATTTTCT-TTAGAATCAAAGTTTATCTCTGAAATAAGACAAACATCG-ATTCTCGT
64 -TTTCCACCATTTT-TGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACAT-GAATACTCAT
* * ** *
40772 AGC-AGTCTCCATTCTTTTCAAGATTAGAAACCAAA
126 A-CTAATCTCCATTCTTTTCGAGATTAGGTACC-AT
* * * * *
40807 AACACATTCTCTTT-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTATT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
* * *
40870 TCCACCGTTTTTTTATGGAATCAAAGTTTGTCTCTTAAATTA-GACAAACATGAATACTCACACT
66 TCCACC-ATTTTTGATGGAATCAAAGTTTGTCTCTTAAA-TAGGACAAACATGAATACTCATACT
*
40934 AATC-CCTATTC-TTTC-AGGATTAGGCACCAT
129 AATCTCC-ATTCTTTTCGA-GATTAGGTACCAT
** * ** * * ** *
40964 AA-ACATAGTCTTCTAATTAGGATCCATGATATTGGTGCTTTGGTTTCATAAGAAAGGC-TTT-T
1 AACACATTCTCTT-TCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCT
* * * * ** * * *
41026 TACCAACCAATTTTTG-T-AAAGTCTAAGTTCGTGC-CGCAAAT-GAGCCAAACATGGATTCT-A
65 TTCC-ACC-ATTTTTGATGGAA-TCAAAGTTTGT-CTCTTAAATAG-GACAAACATGAATACTCA
* ** * *
41086 GTAATTGTCTTCATTCATTTT--ATGATTAGGGT-CTAT
125 -TACTAATCTCCATTC-TTTTCGA-GATTA-GGTACCAT
* * * * * ** * * *
41122 AAACACATTCTC-CTCATTATGATTA-ATGATATTTATGTTTTTCTTTTGCATGAAAATCTTTTC
1 -AACACATTCTCTTTCATTAGGA-AACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTC
* * * ** ** * * * * * *
41185 TTTGCTCTATTTTTCTTAAAATCAAAGTTTATTTCTTAAATAAGA-AAAGCATCAATTCTCGTAC
64 TTTCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAA-CATGAATACTCATAC
* * * * * * *
41249 CAGTCTCCATTTTTTTCAAGATTGGGAACCAAA
128 TAATCTCCATTCTTTTCGAGATTAGGTACC-AT
* * * * * * * * *
41282 AACACATTCCCTTT-ATTAGGATACATGACATTAATGCTTTGGTATCACAATAAATGCTTTTCTT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
** * * * * *
41346 TCCACCATTTTTCTTAGAATCAAAGTTTATATCTTAAAT-GCGACAAACATGAATACTAATTCTA
66 TCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAG-GACAAACATGAATACTCATACTA
* ***
41410 ATACTAATCCACGTTCCTTTTAG-GATTACCCACCAT
130 AT-C---TCCA--TT-CTTTTCGAGATTAGGTACCAT
* * ** * *
41446 AAACACATTCTC--T-A-T----AA-ATGATGTTGATGATTCTCTTTTACG--TGAAAATCTTTT
1 -AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTT-TAGTTT-CGCAAGAAAAGCTTTT
* * ** * ** * *
41500 CTTTACC-CTATTTTCTTA-AAAATTAAAGTTCATCTCTTAAATAGGACAACCATCG-ATTCTCA
63 CTTT-CCACCATTTT-TGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACAT-GAATACTCA
* * * * * *
41562 TTAC-AGTCTCCATTATTTTC-AGGATTGGGAACTAAA
125 -TACTAATCTCCATTCTTTTCGA-GATTAGGTAC-CAT
* * * * * * *
41598 AACACATTC-CCTTCATTAGGATACATGACATGGATGCTTTGGTGTCG-TAGAAAAAGCTTTTCT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAG-AAAAGCTTTTCT
* * ** * * *
41661 TTCCATCGTTTTTGATAAAATCAAATTTTGTCTCTTAAATATGACAAACATGAATAGC-CATTCT
65 TTCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATA-CTCATACT
* *
41725 AATCCCCATTC-TTTC-AGGATTAGGCACCAT
129 AATCTCCATTCTTTTCGA-GATTAGGTACCAT
* ** * * * * * * * **
41755 AA-AAATAGTTTTCTCATAACGATACACGATATTGATG-TTTTGATTTCACAAGAAGGGC-TTTC
1 AACACATTCTCTT-TCATTAGGAAACATGATATTGATGCTTTAG-TTTCGCAAGAAAAGCTTTTC
* ** * * * *
41817 TTCCCACCAATTTTTGCA---AAGTCTTA-TTTCGTGC-CTCAAAT-GAGACAAAAATGGATTCT
64 TTTCCACC-ATTTTTG-ATGGAA-TCAAAGTTT-GT-CTCTTAAATAG-GACAAACATGAATACT
* * * * * * * *
41876 -AGTAATGATCTTCATT-TATTTTGTGATTAAGCACTAT
123 CA-TACTAATCTCCATTCT-TTTCGAGATTAGGTACCAT
* * * * ** * * * *
41913 AAACACATTATC-CTCATTAGGATAA-ATGAGATTGATGATTTTCTCTT-GGATGAAAATCCTTT
1 -AACACATTCTCTTTCATTAGGA-AACATGATATTGATGCTTTAGT-TTCGCAAGAAAAGCTTTT
* * * *** * ** ** * * *
41975 -TTTCACCCCATGTTCTT-A--AAATTAAAGTCCATCCCACAAATAAAATAAGCATCG-ATTCTC
63 CTTTC-CACCAT-TT-TTGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACAT-GAATACTC
* * * * *
42035 GTAAC-AATCTCCATT-TTCTTCAATATTAGGAACCAAA
124 AT-ACTAATCTCCATTCTT-TTCGAGATTAGGTACC-AT
* * * * * * *
42072 AACACATTC-CTTTCTTTAGGATACATAACATTGATGCTTTACTGTCGCAAGAAAAGCTTTTATT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
* *
42136 TCCACCATTTTTTATGGAATCAAAGTTTGTCTCTTAAATTA-GACAAACATGAATACTCACACTA
66 TCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAA-TAGGACAAACATGAATACTCATACTA
*
42200 ATC-CCTATTC-TTTC-AGGATTAGGCACCAT
130 ATCTCC-ATTCTTTTCGA-GATTAGGTACCAT
** * ** * * ** *
42229 AA-ACATAGTCTTCTAATTAGGATCCATGATATTGGTGCTTTGGTTTCATAAGAAAGGC-TTT-T
1 AACACATTCTCTT-TCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCT
* * * * ** * * *
42291 TACCAACCAATTTTTG-T-AAAGTCTAAGTTCGTGC-CGCAAAT-GAGCCAAACATGGATTCT-A
65 TTCC-ACC-ATTTTTGATGGAA-TCAAAGTTTGT-CTCTTAAATAG-GACAAACATGAATACTCA
* ** * *
42351 TTAATTGTCTTCATTCATTTT--ATGATTAGGGT-CTAT
125 -TACTAATCTCCATTC-TTTTCGA-GATTA-GGTACCAT
* * * * * ** * * *
42387 AAACACATTCTC-CTCATTATGATTA-ATGATATTTATGTTTTTCTTTTGCATGAAAATCTTTTC
1 -AACACATTCTCTTTCATTAGGA-AACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTC
* * * ** ** * * * * * *
42450 TTTGCTCTATTTTTCTTAAAATCAAAGTTTATTTCTTAAATAAGA-AAAGCATCAATTCTCGTAC
64 TTTCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAA-CATGAATACTCATAC
* * * * * *
42514 CAGTCTCCATT-TTTTCAAGATTGGGAACCGAA
128 TAATCTCCATTCTTTTCGAGATTAGGTACC-AT
* * * * * * * * * *
42546 AACACATTCCCTTT-GTTAGGATACATGACATTAATGCTTTGGTGTCACAATAAATGCTTTTCTT
1 AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
** * * *
42610 TCCACCATTTTTCTTAGAATCAAAGTTTATATCTTAAAT-GCGACAAACATGAATACTAATTCTA
66 TCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAG-GACAAACATGAATAC----TC--
* * *
42674 ATACTAATCCCCATTCTTTTC-AGGATTACGCACCAT
124 ATACTAATCTCCATTCTTTTCGA-GATTAGGTACCAT
** * * * * * *
42710 AA-ACATAGTCTTCTCCTAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT-T
1 AACACATTCTCTT-TCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCT
42773 TTCCCACCAATTTTTG
65 TT-CCACC-ATTTTTG
42789 TGAAGTCTAA
Statistics
Matches: 2313, Mismatches: 685, Indels: 500
0.66 0.20 0.14
Matches are distributed among these distances:
150 5 0.00
151 17 0.01
152 2 0.00
153 5 0.00
154 1 0.00
156 37 0.02
157 280 0.12
158 815 0.35
159 923 0.40
160 93 0.04
161 12 0.01
162 3 0.00
163 13 0.01
164 20 0.01
165 77 0.03
166 10 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (159 bp):
AACACATTCTCTTTCATTAGGAAACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTCTT
TCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCATACTAA
TCTCCATTCTTTTCGAGATTAGGTACCAT
Found at i:39660 original size:476 final size:475
Alignment explanation
Indices: 37196--41411 Score: 4568
Period size: 476 Copynumber: 8.9 Consensus size: 475
37186 AACCAAAAAC
* * * * * * * * * *
37196 ACATTC-C-TTTCTTTAGGATACATAACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTCCTCCC
1 ACATTCTCTTTTCATTAGGAAACATGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTT-TTCCC
* * * * *
37259 ACCAATTTTGGTAAAG--T-ATTTCATTCCCCAAATGAGACAAACAAGGATTCTAGTAATGATCT
65 ACCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
** * *
37321 TCTTTC-TGTTTATGATTAGGTGCTATAGACACATTGTCCTCATTAGGATAAATGATATTGATGA
130 TCTTTCAT-TTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* *
37385 TTTTCGTTTGCATAGAAATCTTTTCTTCT-CCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAA
194 TTTTCTTTTGCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAA
* * * * * * * *
37449 ATAACAGAAGCTTCAATTCTTGTAACTGTCTCCATTCTTTTCAAGATTAGGAGCCAAAAACACTT
258 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACAT
* * * * * **
37514 TCCCTTCATTAGGATACATGACATTGATGCTTTGTTATTGCAAGAAAAGCTTTTCTTTCCATCGC
323 TCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * * * *
37579 TTTTGAT-AAAGTCAAAGTTTGTGTCTTAAATAAGACAAACAAGAATACTTATACTAAACCCCAT
388 TTTTGATGGAA-TCAAAGTTTGTCTCTTAAAT-AGACAAACATGAATACTCATACTAATCCCCAT
*
37643 TCTTATTAG-GATTCA-GCACCATAA
451 TCTTATTCGAGATT-AGGCACCATAA
** * * *
37667 ACATAGTCTTCTCATTA-GAATACACGATATTGGTGCTTTGGTTTCACAAAAAAGGCTTTTTACC
1 ACATTCTCTTTTCATTAGGAA-ACATGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTT-CC
* * *
37731 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCGCAAATGAGCCAAACATGGATTCTAGTAATTG-T
64 CACCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAA-TGAT
* * * * * * * *
37795 CTTCATTCATTTTGTGATTAGGCGCTATAAACACGTTCTCCTTATTATGATAAATGACATTAATG
128 CTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * *
37860 TTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATTTCTTAA
193 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAA
* * * * * * * * * *
37925 TTATGAAAAGCATCGATTCTCGTACCAATCTCTATTTTTTTCAAGATTGGGAACCAAAAAAATAT
258 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACAT
*
37990 T-TCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCC-CCA
323 TCT-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * ** * *
38053 TTTTTGATAGAA-C-CA--TTGCCTCTTAAATAGGACAAATGTGAATAGTCATACTAATCCCTAT
387 TTTTTGATGGAATCAAAGTTTGTCTCTTAAATA-GACAAACATGAATACTCATACTAATCCCCAT
* *
38114 T-TTATTCGGGATTAGGCACCATTA
451 TCTTATTCGAGATTAGGCACCATAA
* * * * * * * *
38138 AC-TTAGTATTCTGATAAGG-ATCAATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
1 ACATT-CTCTTTTCATTAGGAAAC-ATGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTT-TTC
* *
38201 CCACCAATTTTTGTAAGGTCTAAGTTCGTGCCTCAAA-GAAGACAAACATGGATTCTAGTAAATG
63 CCACCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATG-AGACAAACATGGATTCTAGT-AATG
* *
38265 ATCTTTTTTCATTTTACGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
126 ATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * *
38330 TGATTTTCTTTTGCATGAAAATATTTTCTTTG-CCTATTTTCCTTAAAATCAAAGTTCATCCCTT
191 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTT
* ** * *
38394 AAATAAGACAAGCATCGATTCTCGTTATGGTCTCCATTATTTT-AAGGATT-GAGAACCTAAAAC
256 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA-GATTAG-GAACCAAAAAC
* * *
38457 ACATTCTCTTCATTATGATACATGACATTGGTGCTTTGGTGTAGCAAGAAAAGCTTTTCTTTCC-
319 ACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* *
38521 CTCATTTTTGATAGAATC--A--TTGTCTCTTAAATAGGA-AAAGCATGAATAGTCATACTAATC
384 C-CATTTTTGATGGAATCAAAGTTTGTCTCTTAAATA-GACAAA-CATGAATACTCATACTAATC
* *
38581 CCTATT-TTATTC-AGGATTAGGCACCATTA
446 CCCATTCTTATTCGA-GATTAGGCACCATAA
** * * * * * *
38610 ACATAGTATTTTGATAAGGATAA-ATGATATTGATGCTTTGGCTTCAGAAGAAAGGCTTTTTTCC
1 ACATTCTCTTTTCATTAGGA-AACATGATATTGGTGCTTTGGTTTCACAAGAAAGGC-TTTTTCC
* *
38674 CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAAC------T-T-G-GATGATC
64 CACCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * * ** * *
38730 TTCTTTCATTTTGTAACTAGAAACTATAAACACATTCTCCTCACTAGGGTAAATGATATTGATGA
129 TTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * * *
38795 TTTTCTTTTGCATGGAAATATTTGT-TTTTCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAA
194 TTTTCTTTTGCATGGAAATCTTT-TCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAA
* * * * ** * *
38859 ATAGGA-AA--AGCG----T--TAACAGTCTCCATTTTTTTCAGGATTAGGTGCCTAAAACATAT
258 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACAT
* ** * * *
38915 TCTCTTCATTA-GATACATGACATTGAAGCTTCAGTGTCGCAAGAAAAGCTTTTCATTCCCCCGT
323 TCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * ** *
38979 TTTTGATAGAATC--A--TTGCCTCTTAAATAGGACAAATGTGAATAGTCATACTAATCCCCATT
388 TTTTGATGGAATCAAAGTTTGTCTCTTAAATA-GACAAACATGAATACTCATACTAATCCCCATT
* *
39040 -TTATTCGGGATTAGGCACCATTA
452 CTTATTCGAGATTAGGCACCATAA
* * * * * *
39063 AC-TTACTATTCTT-ATAAGGATAA-TTGATATTGATGCTTTGGTTACGCAAGAAAGGCTTTCTT
1 ACATT-CTCTT-TTCATTAGGA-AACATGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTT-TT
* * * * * * *
39125 CCCACCAATTTCTGCAAAGTCTAAGTTCATGT-CTCGAATAAGACAAACACGGTTTCTAGTAATG
62 CCCACCAATTTTTGTAAAGTCTAAGTTCGT-TCCTCAAATGAGACAAACATGGATTCTAGTAATG
* ** * * * *
39189 ATCTTCTTTGATTTTACAATTGGGTACTATAAACACATTCTCCTTATTAGGATAATTGATATTGA
126 ATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * *
39254 TAATTTTCCTTTGCAAT-GAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCA
191 TGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCT
* * * * * * * ** *
39318 TAAATAAGATAAGCATTGATTCTTGTAACAGTCTCCATTATTTTTAGGATTGGGTGCCTAAAACA
255 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACA
* * * * *
39383 CATTCCCTTCATTAGGATACTTGACAATGACGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCAC
320 CATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * ** * *
39448 CATTTTTGATGGAATCAAAGCTTGCCTCTTAAATAGGGGAAACATGAATAGTCATACTAAACCCC
385 CATTTTTGATGGAATCAAAGTTTGTCTCTTAAATA-GACAAACATGAATACTCATACTAATCCCC
**
39513 ATTCTT-TTCGAGATTAGGTGCCATAA
449 ATTCTTATTCGAGATTAGGCACCATAA
* * * * *
39539 ACATTCTCTTTTCATTAGGAAACATAATATCGGTGCTTTAGTTTCCCAAGAAAGGCATTTTTCTC
1 ACATTCTCTTTTCATTAGGAAACATGATATTGGTGCTTTGGTTTCACAAGAAAGGC-TTTTTCCC
* * * *
39604 ACCAATTTTTG-AGAAGTCTAAGTTTGTTCCTCAAATGAGATAAACATGGATTCTAGTAGTGTTC
65 ACCAATTTTTGTA-AAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * *
39668 TTCTTTAATTTTAGGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
129 TTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * *
39733 TTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCTTTAGAATCAAAGTTTATCTCTGAAA
194 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA
* * *
39798 TAAGACAAACATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATT
259 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATT
* * *
39863 CTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTT
324 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* *
39928 TTTTATGGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACACTAATCCCCATTC
389 TTTGATGGAATCAAAGTTTGTCTCTTAAA-TAGACAAACATGAATACTCATACTAATCCCCATTC
**
39993 TT-TTCGAGATTAGGTGCCATAA
453 TTATTCGAGATTAGGCACCATAA
* * * * *
40015 ACATTCTCTTTTCATTAGGAAACATAATATCGGTGCTTTAGTTTCCCAAGAAAGGCATTTTTCTC
1 ACATTCTCTTTTCATTAGGAAACATGATATTGGTGCTTTGGTTTCACAAGAAAGGC-TTTTTCCC
* * * *
40080 ACCAATTTTTG-AGAAGTCTAAGTTTGTTCCTCAAATGAGATAAACATGGATTCTAGTAGTGTTC
65 ACCAATTTTTGTA-AAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * *
40144 TTCTTTAATTTTAGGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
129 TTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * *
40209 TTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCTTTAGAATCAAAGTTTATCTCTGAAA
194 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA
* * * *
40274 TAAGACAAACATCAATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATT
259 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATT
* * *
40339 CTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTATTTCCACCATT
324 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* * *
40404 TTTTATGGAATCAAAGTTTGTCTCTTAAATTAGACAAATATGAATACTCACACTAATCCCCATTC
389 TTTGATGGAATCAAAGTTTGTCTCTTAAA-TAGACAAACATGAATACTCATACTAATCCCCATTC
**
40469 TT-TTCGAGATTAGGTGCCATAA
453 TTATTCGAGATTAGGCACCATAA
* * * * *
40491 ACATTCTCTTTTCATTAGGAAACATAATATCGGTGCTTTAGTTTCCCAAGAAAGGCATTTTTCTC
1 ACATTCTCTTTTCATTAGGAAACATGATATTGGTGCTTTGGTTTCACAAGAAAGGC-TTTTTCCC
* * * *
40556 ACCAATTTTTG-AGAAGTCTAAGTTTGTTCCTCAAATGAGATAAACATGGATTCTAGTAGTGTTC
65 ACCAATTTTTGTA-AAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * *
40620 TTCTTTAATTTTAGGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
129 TTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * * *
40685 TTTTCTTTTGCGTGGAAATCTTTTCTTTTCCCTATTTTCTTTAGAATCAAAGTTTATCTCTGAAA
194 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA
* * *
40750 TAAGACAAACATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATT
259 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATT
* * *
40815 CTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTATTTCCACCGTT
324 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-AT
* * *
40879 TTTTTATGGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACACTAATCCCTATT
388 TTTTGATGGAATCAAAGTTTGTCTCTTAAA-TAGACAAACATGAATACTCATACTAATCCCCATT
40944 C-T-TTC-AGGATTAGGCACCATAA
452 CTTATTCGA-GATTAGGCACCATAA
** * * ** * *
40966 ACATAGTCTTCTAATTAGGATCCATGATATTGGTGCTTTGGTTTCATAAGAAAGGCTTTTTACCA
1 ACATTCTCTTTTCATTAGGAAACATGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTT-CCC
* * *
41031 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCGCAAATGAGCCAAACATGGATTCTAGTAATTG-TC
65 ACCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAA-TGATC
* ** * * * *
41095 TTCATTCATTTTATGATTAGGGTCTATAAACACATTCTCCTCATTATGATTAATGATATTTATGT
129 TTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * *
41160 TTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTTATTTCTTAAA
194 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAA
* * * * *
41225 TAAGAAAAGCATCAATTCTCGTACCAGTCTCCATTTTTTTCAAGATTGGGAACCAAAAACACATT
259 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATT
* * * * * * *
41290 CCCTTTATTAGGATACATGACATTAATGCTTTGGTATCACAATAAATGCTTTTCTTTCCACCATT
324 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
** * * * * * *
41355 TTTCTTAGAATCAAAGTTTATATCTTAAATGCGACAAACATGAATACTAATTCTAAT
389 TTTGATGGAATCAAAGTTTGTCTCTTAAAT-AGACAAACATGAATACTCATACTAAT
41412 ACTAATCCAC
Statistics
Matches: 3294, Mismatches: 365, Indels: 168
0.86 0.10 0.04
Matches are distributed among these distances:
452 4 0.00
453 205 0.06
454 48 0.01
455 2 0.00
456 1 0.00
459 1 0.00
460 4 0.00
461 2 0.00
462 209 0.06
463 43 0.01
464 1 0.00
465 3 0.00
466 1 0.00
469 1 0.00
470 14 0.00
471 337 0.10
472 317 0.10
473 60 0.02
474 10 0.00
475 406 0.12
476 1613 0.49
477 12 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
ACATTCTCTTTTCATTAGGAAACATGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTCCCA
CCAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
CTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATA
AGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCT
CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATGGAATCAAAGTTTGTCTCTTAAATAGACAAACATGAATACTCATACTAATCCCCATTCTTA
TTCGAGATTAGGCACCATAA
Found at i:40955 original size:317 final size:317
Alignment explanation
Indices: 39676--41009 Score: 997
Period size: 317 Copynumber: 4.2 Consensus size: 317
39666 TCTTCTTTAA
* * *
39676 TTTT-AGGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTT
1 TTTTCAGGATTAGGCACCATAAACACATTCTCCTCAATAGGATAAATGATATTGATG-CTTTCGT
* *
39740 TTGCATGGAAATCTTTTCTTTTCCCTATTTTCTTTAGAATCAAAGTTTATCTCTGAAATAAGACA
65 TTGCGTGGAAAGCTTTT-TTTTCCCTATTTT-TTTAGAATCAAAGTTTATCTCTGAAATAAGACA
39805 AACATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATTCTCTTTA
128 AACATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATTCTCTTTA
39870 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCG-TTTTTTAT
193 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTTAT
*
39934 GGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACACTAATC-CCCATTC
258 GGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACACTAATCTCCTATTC
** * * * * *
39993 TTTTC-GAGATTAGGTGCCAT-AA-ACATTCTCTTTTCATTAGGA-AACATAATATCGGTGCTTT
1 TTTTCAG-GATTAGGCACCATAAACACATTCTC--CTCAATAGGATAA-ATGATATTGATGCTTT
* * *** * * * * * * * *
40054 AGTTTCCCAAGAAAGGCATTTTTCTCACC-AATTTTTGAGAAGTCTAAGTTTGT-TCCTCAAATG
62 CGTTTGCGTGGAAA-GCTTTTTTTTC-CCTATTTTTTTAGAA-TCAAAGTTTATCT-CTGAAATA
* * * * * * * * ** * *
40117 AGATAAACATGGATTCTAGTAG-TGTTCTTCTTTAATTTT-AGGATTAGGCACTATAAACACATT
123 AGACAAACATCGATTCTCGTAGCAG-TCTCCATT-CTTTTCAAGATTAGAAACCAAAAACACATT
* * * * * * ** * * * * * * *
40180 CTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTC-CC-TA
186 CTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGT-
* * * * * * ** *
40243 TTTTCTT-TAGAATCAAAGTTTATCTCTGAAATAAGACAAACATCAATTCTCGTAGC-AGTCTCC
250 TTTT-TTATGGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACA-CTAATCTCC
40306 -ATTC
313 TATTC
* ** * * * * * * * *
40310 TTTTCAAGATTAGAAACCAAAAACACATTCTCTTTATTAGGATACATGACATTGATGCTTTGGTG
1 TTTTCAGGATTAGGCACCATAAACACATTCTCCTCAATAGGATAAATGATATTGATGCTTTCGTT
* * * * * * *
40375 T-CGTAAGAAAAGCTTTTATTTCCACCATTTTTTATGGAATCAAAGTTTGTCTCTTAAATTAGAC
66 TGCGT--GGAAAGCTTTTTTTTCC-CTATTTTTT-TAGAATCAAAGTTTATCTCTGAAATAAGAC
* * ** * * * *** *
40439 AAATAT-GAATACTCACA-CTAATCCCCATTCTTTTCGAGATTAGGTGCC-ATAA-ACATTCTCT
127 AAACATCG-ATTCTCGTAGC-AGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATTCTC-
* * * * * * * * * * **
40500 TTTCATTAGGAAACATAATATCGGTGCTTTAGTTTCCCAAGAAAGGC-ATT-TTTCTCACCAATT
189 TTT-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTC-CACCGTTT
* * * * * * * * * ** *
40563 TTTGA--GAAGTCTAAGTTTGT-TCCTCAAATGAGATAAACATGGATTCT-AGTAGTGTTCTTCT
252 TTTTATGGAA-TCAAAGTTTGTCT-CTTAAATTAGACAAACATGAATACTCA-CACTAATCTCCT
*
40624 -TTAA
314 ATT-C
* * *
40628 TTTT-AGGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTT
1 TTTTCAGGATTAGGCACCATAAACACATTCTCCTCAATAGGATAAATGATATTGATG-CTTTCGT
*
40692 TTGCGTGGAAATCTTTTCTTTTCCCTATTTTCTTTAGAATCAAAGTTTATCTCTGAAATAAGACA
65 TTGCGTGGAAAGCTTTT-TTTTCCCTATTTT-TTTAGAATCAAAGTTTATCTCTGAAATAAGACA
40757 AACATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATTCTCTTTA
128 AACATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATTCTCTTTA
40822 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTATTTCCACCGTTTTTTTAT
193 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTTAT
40886 GGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACACTAATC-CCTATTC
258 GGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACACTAATCTCCTATTC
* * * ** * *
40945 -TTTCAGGATTAGGCACCATAAACATAGTCTTCT-AATTAGGATCCATGATATTGGTGCTTTGGT
1 TTTTCAGGATTAGGCACCATAAACACATTCTCCTCAA-TAGGATAAATGATATTGATGCTTTCGT
41008 TT
65 TT
41010 CATAAGAAAG
Statistics
Matches: 752, Mismatches: 207, Indels: 117
0.70 0.19 0.11
Matches are distributed among these distances:
316 46 0.06
317 484 0.64
318 194 0.26
319 28 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (317 bp):
TTTTCAGGATTAGGCACCATAAACACATTCTCCTCAATAGGATAAATGATATTGATGCTTTCGTT
TGCGTGGAAAGCTTTTTTTTCCCTATTTTTTTAGAATCAAAGTTTATCTCTGAAATAAGACAAAC
ATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATTCTCTTTATTA
GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTTTATGGA
ATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCACACTAATCTCCTATTC
Found at i:42405 original size:474 final size:474
Alignment explanation
Indices: 41459--44105 Score: 2729
Period size: 474 Copynumber: 5.6 Consensus size: 474
41449 CACATTCTCT
* * * * *
41459 ATAAATGATGTTGATGATTCTCTTTTACGTGAAAATCTTTTCTTTACCCTATTTT-CTTAAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT-AAAAT
* * * * * * *
41523 TAAAGTTCATCTCTTAAATAGGACAACCATCGATTCTCATTACAGTCTCCATTATTTTCAGGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATT
* * * * **
41588 GGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTC-GTAGAAAA
130 AGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAG-AAA
* * * *
41652 AGCTTTTCTTTCCATCGTTTTTGATAAAATCAAATTTTGTCTCTTAAATATGACAAACATGAATA
194 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-GACAAACATGAATA
* * * *
41717 GC-CATTCTAATCCCCATTC-TTTCAGGATTAGGCACCATAAAAATAGTTTTCTCATAACGATAC
258 -CTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * * * * *
41780 ACGATATTGATGTTTTGATTTCACAAGAAGGGCTTTCTTCCCACCAATTTTTGCAAAGTCTTATT
322 ATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGT
* *
41845 TCGTGCCTCAAATGAGACAAAAATGGATTCTAGTAATGATCTTCATTT-ATTTTGTGATTAAGCA
386 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC-TTTCATTTTGTGATTAGGCA
* *
41909 CTATAAACACATTATCCTCATTAGG
450 CTATAAACACATTCTCCTCAATAGG
* * * ** * *
41934 ATAAATGAGATTGATGATTTTCTCTTGGATGAAAATCCTTTT-TTCACCCCATGTT-CTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGAAAAT-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** * * * *
41997 TAAAGTCCATCCCACAAATAAAATAAGCATCGATTCTCGTAACAATCTCCATT-TTCTTCAATAT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATT-TTCAAGAT
* * ** *
42061 TAGGAACCAAAAACACATTCCTTTCTTTAGGATACATAACATTGATGCTTTACTGTCGCAAGAAA
129 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA
* * *
42126 AGCTTTTATTTCCACCATTTTTTATGGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATA
194 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAGACAAACATGAATA
* * * * *
42191 CTCACACTAATCCCTATTC-TTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGATCCA
258 CTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * *
42255 TGATATTGGTGCTTTGGTTTCATAAGAAAGGCTTTTTACCAACCAATTTTTGTAAAGTCTAAGTT
323 TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTT
* * * * * **
42320 CGTGCCGCAAATGAGCCAAACATGGATTCTATTAATTG-TCTTCATTCATTTTATGATTAGGGTC
387 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAA-TGATCTTCTTTCATTTTGTGATTAGGCAC
* *
42384 TATAAACACATTCTCCTCATTATG
451 TATAAACACATTCTCCTCAATAGG
* * * * *
42408 ATTAATGATATTTATGTTTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTTCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* ** * * * *
42473 AAAGTTTATTTCTTAAATAAGAAAAGCATCAATTCTCGTACCAGTCTCCATT-TTTTCAAGATTG
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTA
* * * * *
42537 GGAACCGAAAACACATTCCCTTT-GTTAGGATACATGACATTAATGCTTTGGTGTCACAATAAAT
131 GGAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAA
** * * *
42601 GCTTTTCTTTCCACCATTTTTCTTAGAATCAAAGTTTATATCTTAAATGCGACAAACATGAATAC
195 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AGACAAACATGAATAC
* *
42666 TAATTCTAATACTAATCCCCATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCCTAAGG
259 ----TC--ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
*
42731 ATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCCACCAATTTTTGTGAAGTC
318 ATACATGATATTGATGCTTTGGTTTCACAAGAAAGGC--TTTTTCCCACCAATTTTTGTAAAGTC
* * * * *
42796 TAAGTTCGTGACTCAAATGAGACAAACATTGATTCTAGAAATGATTTTCTTTCATTTTGTAATTA
381 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTA
** * * *
42861 GAAACCATAAACACATTCTCGTCACTAGG
446 GGCACTATAAACACATTCTCCTCAATAGG
* *
42890 ----A-CA-A---ATGATTTTCTTTTGCATGAAAATATTTGT-TTTGCCCTATTTTCCTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT-TCTTTGCCCTATTTTCCTTAAAAT
* * * *
42945 CAAAGTTCATCCCTGAAATAGGACAAG---CG----T--TAATAGTCTCCATTATTTTCAGGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATT
** * * * *
43001 AGGTGCCTAAAACATATTTCC-TTCATTA-GATACATGACATTGAAGCTTCGGTGTCACAAGAAA
130 AGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA
* * * * **
43064 AGCTTTTCATTCCCCCGTTTTTGATAGAATC--A--TTGCCTCTTAAATAGGACAAATGTGAATA
194 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-GACAAACATGAATA
* * * * * * * *
43125 GTCATAATAATCCCCATT-TTATTCGGGATTAGGCACCATTAACTTAGTTTTCTGATAAGGATAA
258 CTCATACTAATCCCCATTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
** * *
43189 ATGATATTGATGCTTTGGTTTTGCAAGAAAGCCTTTCTTCCCACCAATTTCTGTAAAGTCTAAGT
322 ATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * * *
43254 TCGTGCCTC-AATAAGACAAACATAGTTTCCAGTAATGATCTTCTTTCATTTTGTAATTGGGCAC
386 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCAC
*
43318 TATAAACACATTCTCCTTAATAGG
451 TATAAACACATTCTCCTCAATAGG
* * * *
43342 ATAAATGATATTGATAATTTTCCTTTGCAATG-AAATATTTTCTTTGCCCTTTTTTCCTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGC-ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
43406 CAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTATTTTTAGGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATT
* ** ** * * * * *
43471 GGGTGCTTAAGACACATTCCTTTCTTTA-GACACATGATAATGATGCTTTGGTGTCACAAGAAAA
130 AGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAA
* * * * * * *
43535 GCTTTTCTTTCCACCATTTTTGATGGAATCAGAGCTTGCCTCGTAAATAGAGGAAACATGAATAG
195 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGA-CAAACATGAATAC
* * * ** ** * * * *
43600 TCATGCTAATCCCCATGCTTTTCAGAATTAGGTGCCATAAACATTCTCTTTTCATTAGGAAACAC
259 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAT
* * * * *
43665 AATATTGGTGCTTTAGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTATAAGTTT
324 GATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * *
43730 GT-TCTCCAAATGAGATAAACATGGATTCTAGTAAT-ATTCTTCTTTAATTTTATGATTAGGCAC
388 GTGCCT-CAAATGAGACAAACATGGATTCTAGTAATGA-TCTTCTTTCATTTTGTGATTAGGCAC
** *
43793 TATAAACATGTTCTCCCCAATAGG
451 TATAAACACATTCTCCTCAATAGG
* * * *
43817 ATAAATGATATTGATCATTTTCTTTTGCATGGAAATCTTTTATTTTCCCTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
43882 AAAGTTTATCTCTGAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTA
66 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTA
* * **
43947 CGAACCAAAAACACATTCTCTTT-ATTAGGATACGTGA-ATTGATGCTTTGGTGTTGCAAGAAAA
131 GGAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAA
*
44010 GCTTTTCTTTCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATAC
195 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAGACAAACATGAATAC
* *** *
44075 TCACACTAATCCATTTTCTTTTCAAGATTAG
259 TCATACTAATCCCCATTCTTTTCAGGATTAG
44106 TCGGGAACTT
Statistics
Matches: 1791, Mismatches: 317, Indels: 128
0.80 0.14 0.06
Matches are distributed among these distances:
452 69 0.04
453 36 0.02
454 79 0.04
456 3 0.00
457 1 0.00
458 1 0.00
460 23 0.01
461 66 0.04
462 4 0.00
464 72 0.04
465 26 0.01
466 3 0.00
468 1 0.00
469 4 0.00
470 99 0.06
472 1 0.00
473 83 0.05
474 614 0.34
475 397 0.22
476 21 0.01
477 1 0.00
478 3 0.00
480 14 0.01
481 72 0.04
482 93 0.05
483 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (474 bp):
ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTA
GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAG
CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGACAAACATGAATACTC
ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGA
TATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCAATAGG
Found at i:45789 original size:102 final size:104
Alignment explanation
Indices: 45676--45866 Score: 296
Period size: 104 Copynumber: 1.9 Consensus size: 104
45666 CGGCCCGGGG
* *
45676 GCGCCCTTCCCGCCCCC-GTGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGCCGGGGCGCACAACACGCGGAGCGCCGGTGCGC
45739 GCCTCGCCCACCCTCGGGTGCGGGCCAGGAGCACGGTGC
66 GCCTCGCCCACCCTCGGGTGCGGGCCAGGAGCACGGTGC
* * * *
45778 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCAACTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGCCGGGGCGCACAACACGCGGAGCGCCGGTGCGC
* *
45843 GCCTCGCCCGCCCTCTGGTGCGGG
66 GCCTCGCCCACCCTCGGGTGCGGG
45867 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 17 0.22
103 4 0.05
104 58 0.73
ACGTcount: A:0.05, C:0.42, G:0.42, T:0.10
Consensus pattern (104 bp):
GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGCCGGGGCGCACAACACGCGGAGCGCCGGTGCGC
GCCTCGCCCACCCTCGGGTGCGGGCCAGGAGCACGGTGC
Found at i:45853 original size:63 final size:63
Alignment explanation
Indices: 45772--45968 Score: 188
Period size: 63 Copynumber: 3.1 Consensus size: 63
45762 GCCAGGAGCA
45772 CGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCAACTCGCGGGGCGC
1 CGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCAACTCGCGGGGCGC
* * * * * * ** * *
45835 CGGTGCGCG-CCTCGCCCGCCCTCT--GGTGCGGGGCGGCCGCGGC-ACGGACCCGGGCGGGGAG
1 CGGTGCGCGCCCT-TCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCAACTC--GCGGGGCG
45896 C
63 C
* * * *
45897 ACGGGGCGCGCCCTTCCCGCCCCCTGGGGT-GGGGGCGGTCGGGGCGCACACCTCGCGGGGCAC
1 -CGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCAACTCGCGGGGCGC
45960 CGGGTGCGC
1 C-GGTGCGC
45969 ACCGTTGTCG
Statistics
Matches: 100, Mismatches: 25, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
60 4 0.04
61 16 0.16
62 12 0.12
63 48 0.48
64 15 0.15
65 5 0.05
ACGTcount: A:0.05, C:0.40, G:0.46, T:0.10
Consensus pattern (63 bp):
CGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCAACTCGCGGGGCGC
Found at i:46108 original size:64 final size:64
Alignment explanation
Indices: 46029--46150 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
46019 GTTTGGTTGG
*
46029 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
46093 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
46151 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:46607 original size:99 final size:101
Alignment explanation
Indices: 46489--46672 Score: 286
Period size: 102 Copynumber: 1.8 Consensus size: 101
46479 GGCCAGGTGC
* *
46489 ACGGTGCGCGCCCTGCCCGCCCCCT-GGT-GTGGGG-CGGTCGGGGCGCACACCATGCGGAGCAC
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGTCGGGGGGCCGGGCGGGGCGCACACCATGCGGAGCA-
46551 CGGTGCGCGCCTCGCCCACCTCGCTGCGGGCGGGAGA
65 CGGTGCGCGCCTCGCCCACCTCGCTGCGGGCGGGAGA
*
46588 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGGCCGGGCGGGGCGCACGCCATGCGGAGC
1 ACGGTGCGCGCCC-TGCCCGCCCCCT-GGGTCGGGGGGCCGGGCGGGGCGCACACCATGCGGAGC
46652 ACGGTGCGCGCCTCGCCCACC
64 ACGGTGCGCGCCTCGCCCACC
46673 CTGGGGGGTG
Statistics
Matches: 77, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
99 23 0.30
100 1 0.01
101 3 0.04
102 25 0.32
103 25 0.32
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (101 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGTCGGGGGGCCGGGCGGGGCGCACACCATGCGGAGCAC
GGTGCGCGCCTCGCCCACCTCGCTGCGGGCGGGAGA
Found at i:46784 original size:62 final size:59
Alignment explanation
Indices: 46583--46786 Score: 155
Period size: 64 Copynumber: 3.2 Consensus size: 59
46573 GCTGCGGGCG
* * * * * *
46583 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGGCCGGGCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TTCCGCCCCCTGGGGT--GGGGG-CGGCCGCGGCGCAC-CCGTGA
46647 GGAGCACGGTGCGCG-CC-T-CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCG-G
1 GGAGCACGGTGCGCGCCCTTCCG-CC-CCCT--GGGGTG-GGGGCGGCCGCGG--CGCACCCGTG
46708 CCA
59 --A
* *
46711 GGAGCACGGTGCGCGCCCTTCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGG
1 GGAGCACGGTGCGCGCCCTTCCGCCCCCTGGGGTGGGGGCGGCCGCGGCGCAC-CCGTGA
46771 GGAGCACCGGGTGCGC
1 GGAGCA-C-GGTGCGC
46787 ACAGTTGCCG
Statistics
Matches: 116, Mismatches: 8, Indels: 34
0.73 0.05 0.22
Matches are distributed among these distances:
60 13 0.11
61 6 0.05
62 33 0.28
63 14 0.12
64 39 0.34
65 6 0.05
66 3 0.03
67 2 0.02
ACGTcount: A:0.09, C:0.38, G:0.45, T:0.08
Consensus pattern (59 bp):
GGAGCACGGTGCGCGCCCTTCCGCCCCCTGGGGTGGGGGCGGCCGCGGCGCACCCGTGA
Found at i:46801 original size:818 final size:816
Alignment explanation
Indices: 45012--46923 Score: 2271
Period size: 818 Copynumber: 2.3 Consensus size: 816
45002 GCGCGCGCAA
* * * * *** * *
45012 CGCCCGCCCTCGGGTGC-GGACGGCCGCGGCACCCGCCAAAGCCACGAGCATGGTGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGGCGGCCGCGGCACGCACCCGGGCCAGGAGCACGGTGCGCGCCCTT
* * * * ** * *
45076 CCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCAATGGGTGCTCACCCTTGC
66 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TG-GGGGCACCGGGTGCGCACCGTTGC
* * *
45140 CGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGAT
129 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT
* * *
45205 GCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGAGGGGGGAGGGACGGATGC
194 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGC
*
45270 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTC
259 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTC
*
45335 GTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAT
324 CTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAA-
* *
45400 GGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCAACCCACT
378 ---GGAGGCGTGT--G-GA-GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCAACCCACT
* * * **
45465 GCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCCTATAGAGCTTAAGATGGATTTCTTTGTTG
436 G-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCCTATAGAGCTTAAGAGGGATTTCTATGCCG
* ** * *
45530 TCACCAGTGGAGGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCG
500 TCACCAGCGGACAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCA
* * *
45595 AGACCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGTGCGCGGGTGCCGAGGCT
565 AGACCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGTGCGCGGGGGCCGAGGCA
* * *
45660 CGCACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCG
630 CACACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCG
* * * *
45725 GAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGGCCAGGAGCACGGTGCGCGCCCTTCCCG
695 GAGCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCCAGGAGAACGGTGCGCGCCCATCCCG
* * *
45790 CCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCAACTCGCGGGGCGCCGGTGCGCGCCT
760 CCCCCTGGGGTGGGGGGCGGGCGGGGCGCCCAACTCGCGGAGCGACGGTGCGCGCCT
* * * ** *
45847 CGCCCGCCCTCTGGTGCGGGGCGGCCGCGGCACGGACCCGGGCGGGGAGCACGGGGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGGCGGCCGCGGCACGCACCCGGGCCAGGAGCACGGTGCGCGCCCTT
*
45912 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGGTGCGCACCGTTGT
66 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCT-G-GGGGCACCGGGTGCGCACCGTTGC
* * *
45977 CGGGGTACCCAACCGACCAACGCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGGGAGGGACG
129 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTT-G--GAGAGGGGAGGGACG
* *
46042 GATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAGAGAGGGGGGAGGGCCG
191 GATGCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTT-G-GAGGGGGGAGGGACG
* * *
46106 GATGGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCG
254 GATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCG
*
46170 CGGTCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCGGCG-A-GTGGC
319 CGGTCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGAGGC
* * * *
46231 G-GT-G-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAG
384 GTGTGGAGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-ACCCACTGCCCCCCCCTAG
*
46292 GTTGCTCAAGTATCACA-CCCCCTATAGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGA
448 GTTGCTCAAGTATCACACCCCCCTATAGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA
* * * * *
46354 CAG-GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGT-GGCGCAAGCCCGCACC
511 CAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACC-CACC
* * *
46417 ACCTCGGGCAGCCGGCGCGCGCCTCGCCCACCCTC-GG-GCGCGGGCGGCCGAGGCACACCCCCG
574 ACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGTGCGCGGG-GGCCGAGGCACACACCCG
* *
46480 GCCAGGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGCGGTCGGGGCGCACACCATGC
638 G-C-----C-CGG-GCGCGCCCTGCCCGCCCCCGTGGTG-GGGGCGGCCGGGGCGCACACCACGC
*
46544 GGAGCACCGGTGCGCGCCTCGCCCA-CCTC-GCTGCGGG-CGGGAGAACGGTGCGCGCCCATCCC
694 GGAGCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCCAGGAGAACGGTGCGCGCCCATCCC
*
46606 GCCCCCTGGGGTCGGGGGGCCGGGCGGGGCGCACGCCA-T-GCGGAGC-ACGGTGCGCGCCT
759 GCCCCCTGGGGT-GGGGGG-CGGGCGGGGCGC-C-CAACTCGCGGAGCGACGGTGCGCGCCT
*
46665 CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCC-GGCCAGGAGCACGGTGCGCGCCC
1 CGCCCACCCT--CGGGTGCGGGGCGGCCGCGGCACGCACCCGGGCCAGGAGCACGGTGCGCGCCC
* *
46729 TT-CCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGGGGAGCACCGGGTGCGCACAGTT
64 TTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TGGGG-GCACCGGGTGCGCACCGTT
* * * *
46793 GCCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGG
127 GCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGG
* ** * * *
46858 ATGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACG
192 AT-GCC-GGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACG
46922 GA
254 GA
46924 CGGCCTATGT
Statistics
Matches: 938, Mismatches: 104, Indels: 89
0.83 0.09 0.08
Matches are distributed among these distances:
811 10 0.01
812 63 0.07
813 71 0.08
814 28 0.03
815 51 0.05
816 22 0.02
817 70 0.07
818 138 0.15
819 52 0.06
820 92 0.10
821 4 0.00
822 4 0.00
827 1 0.00
828 16 0.02
829 23 0.02
835 16 0.02
836 45 0.05
837 87 0.09
838 1 0.00
839 2 0.00
840 122 0.13
841 20 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (816 bp):
CGCCCACCCTCGGGTGCGGGGCGGCCGCGGCACGCACCCGGGCCAGGAGCACGGTGCGCGCCCTT
CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTGGGGGCACCGGGTGCGCACCGTTGCCG
GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGC
CGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGCTT
GGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCT
CGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGAGGCGTGTGGA
GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCAACCCACTGCCCCCCCCTAGGTTGCTCA
AGTATCACACCCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGACAGTGACCAC
GTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCACCACCTCGGGCACC
CGGCGCGCGCCACGCCCACCCTCGGGTGCGCGGGGGCCGAGGCACACACCCGGCCCGGGCGCGCC
CTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGC
CCACCCTCGGCTGCGGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTGGGGGGCGGG
CGGGGCGCCCAACTCGCGGAGCGACGGTGCGCGCCT
Done.