genome.fa.s992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold992
Parameters: 2 7 7 80 10 50 1000
Length:  92738

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6460--6525	35	1.9	35	87	3	98	30	25	12	31	1.92
13938--13963	13	2.0	13	100	0	52	30	15	15	38	1.88
16339--16385	21	2.3	21	82	10	62	44	4	19	31	1.70
18586--18616	15	2.1	15	93	0	53	12	22	16	48	1.80
20420--20464	21	2.1	21	84	8	56	22	20	4	53	1.63
22554--22579	13	2.0	13	100	0	52	30	15	15	38	1.88
25622--25659	20	1.9	20	88	0	58	39	18	10	31	1.85
25724--25767	20	2.2	20	80	4	54	47	15	11	25	1.79
28592--29127	80	6.8	79	72	12	339	28	23	10	36	1.89
28604--29119	160	3.3	157	78	8	492	29	22	11	37	1.89
29684--29714	11	2.8	11	95	0	53	67	0	0	32	0.91
29674--29715	3	15.0	3	80	14	54	66	0	0	33	0.92
29663--29715	14	4.0	14	76	14	58	71	0	0	28	0.86
29937--30073	14	10.1	14	69	14	56	24	19	9	46	1.79
29953--30041	29	3.3	27	72	23	80	26	20	7	44	1.78
29941--30048	52	2.1	52	91	0	171	25	20	9	45	1.80
30444--30522	33	2.4	32	81	10	88	48	12	18	20	1.81
32193--32225	14	2.3	15	90	10	52	78	0	9	12	0.95
34886--34969	24	3.4	24	66	30	68	27	19	9	44	1.81
34890--35015	51	2.5	51	100	0	252	27	19	10	42	1.84
37856--37928	38	1.9	38	94	0	128	30	27	19	23	1.98
39073--39313	114	2.1	114	92	1	403	31	17	12	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40330--40494	90	1.8	89	83	6	217	26	28	16	28	1.97
41312--41469	44	3.6	44	82	5	196	21	24	14	39	1.91
41581--42073	85	5.8	85	80	1	456	18	28	17	36	1.93
41663--42073	127	3.2	128	74	5	357	18	27	17	36	1.93
41679--42073	42	9.3	42	71	7	217	18	28	17	36	1.93
42090--42241	43	3.6	43	84	1	198	15	25	20	39	1.91
42090--42259	43	4.0	42	82	2	196	13	25	21	40	1.90
42097--42257	85	1.9	85	85	0	223	13	25	21	39	1.90
42793--42847	11	4.7	11	78	12	65	78	1	3	16	0.98
43810--43850	22	2.0	20	90	9	64	58	17	19	4	1.56
45504--45548	22	2.0	22	100	0	90	53	0	13	33	1.40
46777--46962	80	2.3	79	89	2	291	36	10	24	29	1.88
47689--47791	19	5.7	19	85	14	146	33	11	18	36	1.87
47748--47772	13	1.9	13	100	0	50	36	16	16	32	1.90
47690--47796	32	3.1	32	89	9	142	33	11	18	36	1.87
47867--47995	52	2.5	52	98	0	249	35	17	17	28	1.93
54868--54907	11	3.5	11	93	3	62	90	7	0	2	0.55
54868--54907	12	3.3	12	89	6	55	90	7	0	2	0.55
56024--56061	16	2.3	17	86	4	51	44	23	5	26	1.74
56198--56871	33	20.9	33	74	15	366	19	32	13	34	1.91
56289--56340	27	1.9	27	92	0	86	23	34	15	26	1.94
56228--56461	121	1.9	121	92	1	389	21	32	15	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56351--56873	34	16.0	34	76	12	366	18	32	13	34	1.90
56262--56496	60	3.9	61	73	12	171	20	31	15	31	1.94
56198--56826	98	6.6	97	80	10	550	20	32	14	33	1.92
56868--57029	33	4.9	34	83	9	194	29	32	17	20	1.96
56876--57029	65	2.4	65	86	5	204	30	31	18	19	1.96
57034--57782	49	15.8	49	81	10	862	25	25	17	31	1.97
57031--57782	92	8.0	92	90	5	1139	25	25	17	31	1.97
57551--57846	150	2.0	141	81	5	340	25	24	16	33	1.96
57692--57845	55	2.9	54	83	2	195	24	23	15	36	1.94
57795--57921	67	1.9	68	85	1	175	23	25	11	39	1.89
59099--59151	19	2.7	20	91	2	90	32	11	16	39	1.85
59227--59407	52	3.5	52	98	0	344	37	18	16	28	1.92
65797--65849	20	2.6	21	79	8	65	26	13	18	41	1.87
65797--65855	20	3.0	19	80	7	64	23	11	22	42	1.86
68379--68416	13	2.9	13	96	0	67	31	15	18	34	1.92
68405--68481	20	3.6	20	69	19	57	45	15	11	27	1.81
74573--74631	20	3.0	19	82	7	64	25	13	20	40	1.89
75167--75536	44	8.7	44	75	10	171	41	13	25	19	1.88
75410--75565	45	3.5	45	77	9	140	41	13	23	21	1.88
75569--76099	62	8.6	62	85	0	616	31	20	24	23	1.98
75544--76101	123	4.5	124	83	2	620	31	20	23	24	1.98
75544--76099	185	3.0	184	81	4	650	31	20	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79350--79425	35	2.2	35	95	0	134	18	14	31	35	1.91
82411--82661	80	3.2	79	80	5	292	35	12	23	27	1.92
82419--82641	77	2.8	78	81	4	270	35	14	24	26	1.93
86090--86119	10	2.9	10	95	5	51	20	0	10	70	1.16

Tables:   1

The End!