Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold997
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27379
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Found at i:1246 original size:1 final size:1
Alignment explanation
Indices: 1240--1314 Score: 141
Period size: 1 Copynumber: 75.0 Consensus size: 1
1230 AAAGAAACGG
1240 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1305 AAGAAAAAAA
1 AAAAAAAAAA
1315 TATGTTTTAA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.99, C:0.00, G:0.01, T:0.00
Consensus pattern (1 bp):
A
Found at i:4812 original size:20 final size:20
Alignment explanation
Indices: 4787--4951 Score: 159
Period size: 20 Copynumber: 7.7 Consensus size: 20
4777 TTTTAACTAG
4787 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
* * *
4807 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
4827 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
4847 ATGTATCGATACATCTGGGTAAAAAAATAGA
1 ATGTATCGATACAT-T--G------AA-A-A
*
4878 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
4898 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
4918 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
4938 CTGTATCGATACAT
1 ATGTATCGATACAT
4952 CTGGGTAAAA
Statistics
Matches: 119, Mismatches: 15, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
20 95 0.80
21 1 0.01
22 2 0.02
23 1 0.01
28 1 0.01
29 2 0.02
30 2 0.02
31 15 0.13
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:4832 original size:40 final size:40
Alignment explanation
Indices: 4787--4951 Score: 195
Period size: 40 Copynumber: 3.9 Consensus size: 40
4777 TTTTAACTAG
4787 ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
* *
4827 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACA--T---T-----CATA-C
*
4878 ATGTATCGATACATTGAAGAATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
*
4918 ATGTATCGATACATTGAAAACTGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACAT
4952 CTGGGTAAAA
Statistics
Matches: 107, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
40 65 0.61
41 3 0.03
42 1 0.01
45 1 0.01
46 1 0.01
49 1 0.01
50 3 0.03
51 32 0.30
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (40 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
Found at i:4882 original size:91 final size:91
Alignment explanation
Indices: 4787--4962 Score: 334
Period size: 91 Copynumber: 1.9 Consensus size: 91
4777 TTTTAACTAG
4787 ATGTATCGATACATTGAAAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTA
1 ATGTATCGATACATTGAAAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTA
4852 TCGATACATCTGGGTAAAAAAATAGA
66 TCGATACATCTGGGTAAAAAAATAGA
* *
4878 ATGTATCGATACATTGAAGAATGTATCGATACATTCATACATGTATCGATACATTGAAAACTGTA
1 ATGTATCGATACATTGAAAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTA
4943 TCGATACATCTGGGTAAAAA
66 TCGATACATCTGGGTAAAAA
4963 TGTGACTTTT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 83 1.00
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTA
TCGATACATCTGGGTAAAAAAATAGA
Found at i:5712 original size:48 final size:48
Alignment explanation
Indices: 5650--5861 Score: 272
Period size: 48 Copynumber: 4.5 Consensus size: 48
5640 AGAAGAGTGC
** * * *
5650 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
5698 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* *
5746 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA--TAAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* * * *
5792 CAATGTGCTGATTCAAGGCTAGCGACATTGAGCTAA--TAAAGGT-GC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* *
5837 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
5862 TATCGGACTT
Statistics
Matches: 152, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
45 23 0.15
46 50 0.33
48 79 0.52
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
Found at i:5772 original size:25 final size:24
Alignment explanation
Indices: 5744--5818 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 24
5734 GGGAAAAGTG
5744 GACAATGTGCTGATTCAAGGCCAGC
1 GACAATGTGCTGATTCAAGG-CAGC
* * * * *
5769 GACATTGAGCT-AATAAAGG-TG-
1 GACAATGTGCTGATTCAAGGCAGC
5790 GACAATGTGCTGATTCAAGGCTAGC
1 GACAATGTGCTGATTCAAGGC-AGC
5815 GACA
1 GACA
5819 TTGAGCTAAT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 9 0.25
22 7 0.19
24 7 0.19
25 13 0.36
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (24 bp):
GACAATGTGCTGATTCAAGGCAGC
Found at i:5787 original size:24 final size:23
Alignment explanation
Indices: 5760--5833 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 23
5750 GTGCTGATTC
5760 AAGGCCAGCGACATTGAGCTAATA
1 AAGG-CAGCGACATTGAGCTAATA
* * * * *
5784 AAGG-TG-GACAATGTGCTGATTC
1 AAGGCAGCGACATTGAGCT-AATA
5806 AAGGCTAGCGACATTGAGCTAATA
1 AAGGC-AGCGACATTGAGCTAATA
5830 AAGG
1 AAGG
5834 TGCCAATATG
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 9 0.25
22 7 0.19
24 11 0.31
25 9 0.25
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.20
Consensus pattern (23 bp):
AAGGCAGCGACATTGAGCTAATA
Found at i:5793 original size:21 final size:22
Alignment explanation
Indices: 5767--5836 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
5757 TTCAAGGCCA
5767 GCGACATTGAGCTAATAAAGGT
1 GCGACATTGAGCTAATAAAGGT
* * * *
5789 G-GACAATGTGCTGATTCAAGGCT
1 GCGACATTGAGCT-AATAAAGG-T
5812 AGCGACATTGAGCTAATAAAGGT
1 -GCGACATTGAGCTAATAAAGGT
5835 GC
1 GC
5837 CAATATGCTG
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 9 0.25
22 9 0.25
23 2 0.06
24 7 0.19
25 9 0.25
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.23
Consensus pattern (22 bp):
GCGACATTGAGCTAATAAAGGT
Found at i:5822 original size:94 final size:92
Alignment explanation
Indices: 5640--5866 Score: 267
Period size: 94 Copynumber: 2.4 Consensus size: 92
5630 CTTAAAGGTG
* * ** * *
5640 AGAAGAGTGCCAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGACAATGTG
1 AGAAAAGTGACAATGTGCTGATTCAAGGCCAGCGACATCGAGCTAA-GGAAAAGTGGACAATGTG
5705 CTGATTCAAGGCCAGCGACATTGAGCTA
65 CTGATTCAAGGCCAGCGACATTGAGCTA
* * *
5733 AGGGAAAAGTGGACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-TAAAGGTGGACAATG
1 A--GAAAAGT-GACAATGTGCTGATTCAAGGCCAGCGACATCGAGCTAAGGAAAAGTGGACAATG
*
5797 TGCTGATTCAAGGCTAGCGACATTGAGCTA
63 TGCTGATTCAAGGCCAGCGACATTGAGCTA
* * * * * *
5827 ATAAAGGTGCCAATATGCTGATTCAATGCCAGCGATATCG
1 AGAAAAGTGACAATGTGCTGATTCAAGGCCAGCGACATCG
5867 GACTTTAAGA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
91 27 0.24
92 5 0.04
93 1 0.01
94 42 0.37
95 6 0.05
96 33 0.29
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (92 bp):
AGAAAAGTGACAATGTGCTGATTCAAGGCCAGCGACATCGAGCTAAGGAAAAGTGGACAATGTGC
TGATTCAAGGCCAGCGACATTGAGCTA
Found at i:6061 original size:56 final size:56
Alignment explanation
Indices: 5975--13041 Score: 6461
Period size: 56 Copynumber: 124.8 Consensus size: 56
5965 CATCGACTTG
* * * * *
5975 TGTGGGCTTTGAAAGGGGATGCCACTGACTTGTGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTT-AAA-AGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * *
6033 TGTAGGCTTTAAAAGGGTGCCACTGACTTATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
6089 TGTGTAAGCTTTGAAATGGTATGCCATTAACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTG--GGCTTT-AAAAGG-ATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
6149 TGTGGGCTTTGAAAGGATGCCGA-TGACTTGTGGGCTTTAAAAGAATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCC-ACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * ** *
6205 TATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
6261 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* ** *
6318 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAAGCTTTGAAAATG-TGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTG-AAAGGATGCCACTGACT
* * * * *
6374 TATGGGCTTTGAAAA-TATGCCACTGACTTCTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * *
6431 TGTGAGCTTTGAAAGGATGCCACTAACTTATGGGCTTTCAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
6487 TATGGGCATTGAAAAGG-TGCCACTAACTTGTGGCCTTTTAAAAGATGCCACTAACT
1 TGTGGGC-TTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * ** *
6543 TGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTTTGAAAGGGTGTTACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
6599 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
6655 TGTGGGTTTTGAAAA-GTTACCA-TTACTTGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* ** * * *
6711 TGTGGTCTTTCGAAGAGATGTCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
6768 TGTAGG-TTTTAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * *
6823 T-TTGGCTTTTTGAAGAGATGCCA-TAGACTTATGGGCTTTGAAAGGATGCCACTCACT
1 TGTGGGC-TTTAAAAG-GATGCCACTA-ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
6880 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGCG-TGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* * * *
6936 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGAGCTTTAAAAGGATGCCACTAACC
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * * *
6992 TGTGGTCTTTTGAAGCGATGCCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTGAAT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * * *
7050 TGTGGGTTTTGAAAA-GATGTCACTAACTTGTGGGCTTTGAAAGGGTGCCATTCATT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
7106 TATGGGCTTTGAAAA-GATGCCACTAACTTATGGGTTTTTG-AAGAAATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGG-CTTTGAAAG-GATGCCACTGACT
* * * * *
7163 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGCGCTTTGTAATGATACCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
7219 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
7275 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
7331 TATGGGCTTTGATAA-GATGCCACTAACTTGTGGGTTTTGAAAGGATACCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * ** ** * *
7387 TATGGTCTTTTGAAGAGATGCCACTAACTTGTGTTCTTTTG-AAGAGATGCCACTAACC
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * * *
7445 TGTGGGTTTTCAAAGGATGCCACTAACGTGTGGGCTTTAAAAGGGTGCCACTGACC
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
7501 TGTGGGCTTTAATAGGGTGCCACTGACTTGTGGGTTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * ** * * *
7557 TATGTGCTTTTGAAGAGATGCCACTGACTTGTAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
7614 TGTAGGCTTTGAAAGGGTGCCACTAACTTGT-GGTTTTCGAAAAGATGTCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* * * ** *
7670 TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGTCTTCAAAAAGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
7726 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTCATA-GAGTGCTACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * *
7782 TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
7838 TGTGGGCTTTAAAAGGATGCCACTTACTTGTGGGCTTTCAAAGGGTGCCACTTACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7894 TGTGGGCTTTGAAAA-GAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
7950 TGTGGGATTTAAAAGGGTACCACTAACTTGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* ** * * * * *
8006 TGTGAGCTTTTGAAGAGATGCAACTGACTTGTAGGCTTTGAAAGGATGCTACTAACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
8063 TGTAGGCTTTGAAAATG-TGTCACTGACCTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
8119 TGTGGGCTTTTGAATA-GATGCCACTGACTTGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * ** *
8176 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTAAAAAGG-TACCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTGACT
* * * * *
8232 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *** * * *
8288 TGTAGGCTTTGAAAGGGTATTACTAACTTATGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
8344 TGTGGGCTTTGAAAGGATGCCACTGACTTATGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
8399 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTTGAACA-GATGCCACTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGC-TTTGAA-AGGATGCCACTGACT
* * * *
8457 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
8512 TGTGGGCTTTAAAAAGG-TGCCATTGACTTGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* * *** * *
8569 TGTGGGCTTTGAAAGGGTATTACTAACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
8625 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
8681 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAAATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
8738 TGTGGTCTTTTGAAAA-GATGCCACTAACTTGTAGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTT-AAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * * *
8796 TGTGGGTTTTGAAAA-GATGTCACTAACTTGTGGGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
8852 TATGGGCTTTGAAAA-GATACGACTGACTTGTGGGCTTTTGAAAAGATGCTACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTGACT
** * * * *
8909 TGTTTGTTTTGAAAA-GATGCCACTAACCTGTGGGCTTTGAAAGGATACCACTCACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
8965 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
9021 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
9077 TGTGGGCTTTGATAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * ** * ** *
9133 CAG-GGTCTTTTGAAGAGATGCCACTGACTTGTGTTCTTTTGAATA-GATGCCACTAACT
1 -TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGC-TTTGAA-AGGATGCCACTGACT
* * * * * * *
9191 TGTGTGATTTGAAAA-GATGCCACTAACTTGTGCGCCTTAAAAGGGTGCCGCTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
9247 TGTGGGCTTTGAAATGATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
** * *
9304 TGTGGGCTTTTGAAGAGATGCCACTTACTTGTGGGCTTTGAAAGGATGCCCCTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * ** * * *
9361 TGTAGGCTTTGAAAGGGTGCCACTTACTTGTGGTATTCGAAAAGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
9417 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
9473 TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
9529 TATGGGCTTTGAAAGGATGCCACTTACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
9585 TTTGGGCTTGGAAAA-GAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTT-TAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
9641 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* ** * *
9697 TGTGAGCTTTTGAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
9754 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTT-AAA-------A--G-GATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTG
9818 ACT
54 ACT
* * * *
9821 TGTGGGCTTTGAAAA-GATGTCACTGACTTGTGGGCTTTGAAAGGATGCCTCTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
9877 TGTAGGCTTT-AAAGGGTGCCACTGACTTGTAGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * * *
9932 TGTGGGTTTTTGAAGAGATGCCATTGACTTGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
9989 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTAAAAAGG-TAG-CACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGAT-GCCACTGACT
* * * *
10045 TGTGGGCTTTGAAAGGATGCCACTGAA-TTGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACT-AACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *** * *
10101 TGTAGGCTTTGAAAGGGTATTACTAACTTGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
10157 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
10212 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTTGAACA-GATGCCACTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGC-TTTGAA-AGGATGCCACTGACT
* * * *
10270 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTTG-AAGGGTGTCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
10325 TGTGGGCTTTAAAAAGG-TGCCATTAACTTGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* * *** * * *
10382 TGTGGGCTTTGAAAGGGTATTACTAACTTATGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
10438 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
10494 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAAATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
10551 TATGGTCTTTTGAAAA-GATGCCACTAACTTGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTT-AAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * * *
10609 TGTAGGTTTTGAAAA-GATGTCACTAACTTGTGGGTTTTGAAAGGGTGCCACT--TT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
10663 TATGGGCTTTGAAAA-GATACGACTGACTTGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
** * * * *
10720 TGTTTGTTTTGAAAA-GATGCCACTAACCTGTGGGCTTTGAAAGGATACCACTCACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
10776 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTT-AAATGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GGATGCCACTGACT
* *
10832 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
10888 TGTGGGCTTTGATAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * ** *
10944 TAG-GGTCTTTTGAAGAGATGCCACTGACTTGTGTTCTTTTGAATA-GATGCCACTAACT
1 T-GTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGC-TTTGAA-AGGATGCCACTGACT
* * * * * * *
11002 TGTGTGATTTGAAAA-GATGCCACTAACTTGTGCGCCTTAAAAGGGTGCCGCTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
11058 TGTGGGCTTTGAAATGATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
** * *
11115 TGTGGGCTTTTGAAGAGATGCCACTTACTTGTGGGCTTTGAAAGGATGCCCCTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * ** * * *
11172 TGTAGGCTTTGAAAGGGTGCCACTAACTTGTGGTATTCGAAAAGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
11228 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
11284 TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
11340 TATGGGCTTTGAAAA-GATGCCACTTACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
11396 TTTGGGCTTGGAAAA-GAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTT-TAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
11452 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* * ** * *
11508 TTTGAGCTTTTGAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
11565 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTT-AAA-------A--G-GATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTG
11629 ACT
54 ACT
* * * *
11632 TGTGGGCTTTGAAAA-GATGTCACTGACTTGTGGGCTTTGAAAGGATGCCTCTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
11688 TGTAGGCTTT-AAAGGGTGCCACTAACTTGTAGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * * *
11743 TGTGGGTTTTTGAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
11800 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
11856 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGTG-TACCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
11912 TGTGGGCTTTGGAAAA--ATGCTACTAACTTGTGAGCTTTTG-AAGATATGCCACTGACT
1 TGTGGGCTTT--AAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
11969 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTGA
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAA----G-----G--ATGCCACTGA
12034 CT
55 CT
** * * * *
12036 TCCGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACT
1 TGTGGGCTTTAAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
12092 TGTGGGCTTTGAAAGGATGCCTCTAACTTGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
12147 TGTGGGCTTTGAAAA-GATGCCATTGACTTGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGG-CTTTGAAAG-GATGCCACTGACT
*
12204 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * *
12260 TGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCATTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
12315 TGTGGGCTTTAAAAAGG-TACCAGTGACTTGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* ** *
12371 TGTGAGCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
12428 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTT-AAA-------A--G-GATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTG
12492 ACT
54 ACT
* * ** *
12495 TGTGGGCTTTGAAAA-GATGTCACTGACTTGTGGGCTTTGAAAGGACACCACTGATT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
12551 TGTGGCCTTTAAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
12607 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTTTCAAAGGGTGCGACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
12663 TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
12719 TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * **
12775 TGTGGGTTTTGAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGATGCCACCAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
12831 TGTGGGCTTTGAAAGGGTGCCACT-ACTTTTGGTCTTTGAAAAGG-TGTCC-CTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTG-AAAGGATG-CCACTGACT
* ** * * * * * *
12886 TGTGGGCTTTCAAAGGATGCCTTTGACTTGTGGTCTTTAAAAAGGGCTGCCACGGAGT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTT-GAAA-GGATGCCACTGACT
* * * ** * * * * *
12944 TGTGGTCTTTATAAGGTTGCCACGGAGTTGTGGAC-TTAAAAGGTTGCCA-TGGAGT
1 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACT-GACT
* * * * * *
12999 TATGGACTTAAAAAGGAATGCCACTAAATCGTGGACTTTGAAA
1 TGTGGGCTTTAAAAGG-ATGCCACTAACTTGTGGGCTTTGAAA
13042 AGGTTACACT
Statistics
Matches: 5846, Mismatches: 919, Indels: 489
0.81 0.13 0.07
Matches are distributed among these distances:
54 42 0.01
55 516 0.09
56 3362 0.58
57 1307 0.22
58 346 0.06
59 19 0.00
60 39 0.01
61 1 0.00
65 3 0.00
66 8 0.00
67 203 0.03
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (56 bp):
TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:6221 original size:84 final size:84
Alignment explanation
Indices: 5975--12906 Score: 7052
Period size: 84 Copynumber: 81.6 Consensus size: 84
5965 CATCGACTTG
* * * * * *
5975 TGTGGGCTTTGAAAGGGGATGCCACTGACTTGTGGGCTTTGAAGGGGTACCACTGACTTGTAGGC
1 TGTGGGCTTTGAAA--GGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
6040 TTTAAAAGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * * * * *
6061 TATGGGCTTTGGAAGGGTGCCATTGATTTGTGTAAGCTTTGAAATGGTATGCCATTAACTTGTGG
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTG--GGCTTTGAAA-GG-ATGCCACTAACTTGTGG
* *
6126 GCTTTGAAAGGGTGCCACTAACT
62 GCTTTGAAAGGATGCCACTGACT
* * * *
6149 TGTGGGCTTTGAAAGGATGCCGA-TGACTTGTGGGCTTTAAAAGAATGCCACTAACTTATGGGCT
1 TGTGGGCTTTGAAAGGATGCC-ACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
*
6213 TTGAAAGGGTGCCACTGACT
65 TTGAAAGGATGCCACTGACT
** * *
6233 TGTGGGCTTTGAAAATATGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-T
6298 TTG-AAGAGATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
** * * *
6318 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAAGCTTTGAAAATG-TGCCACTGACTTATGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCT
**
6382 TTGAAAATATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * *
6402 TCTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGCTTTGAAAGGATGCCACTAACTTATGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
6466 TTTCAAAGGATGCCACTAACT
64 TTTGAAAGGATGCCACTGACT
* * * * *
6487 TATGGGCATTGAAAAGG-TGCCACTAACTTGTGGCCTTTTAAAAGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* * *
6551 TTAAAAGGATACCACTAACT
65 TTGAAAGGATGCCACTGACT
* ** *
6571 TGTGGGCTTTGAAAGGGTGTTACTAACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
6636 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * * * *
6655 TGTGGGTTTTGAAAAGTTACCA-TTACTTGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGGCT
*
6719 TTCG-AAGAGATGTCACTGACT
65 TT-GAAAG-GATGCCACTGACT
* * * *
6740 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-TTTTAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
6804 TGAAAAGATGCCATTGACT
66 TGAAAGGATGCCACTGACT
* * * *
6823 T-TTGGCTTTTTG-AAGAGATGCCA-TAGACTTATGGGCTTTGAAAGGATGCCACTCACTTATGG
1 TGTGGGC--TTTGAAAG-GATGCCACTA-ACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGG
*
6885 GCTTTGAAAGGATGCCACTAACT
62 GCTTTGAAAGGATGCCACTGACT
* * *
6908 TGTGGGCTTTGAAAGCG-TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGAGCT
1 TGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* * *
6972 TTAAAAGGATGCCACTAACC
65 TTGAAAGGATGCCACTGACT
* * *
6992 TGTGGTCTTTTG-AAGCGATGCCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTGAA-TTGTG
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACT-AACTTGTG
* * * *
7054 GGTTTTGAAAAGATGTCACTAACT
61 GGCTTTGAAAGGATGCCACTGACT
* * * * * * * *
7078 TGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTTTGAAAAGATGCCACTAACTTATGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGG-CT
*
7143 TTG-AAGAAATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
* * * * * * *
7163 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGCGCTTTGTAATGATACCACTAACTTGTGAGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
7228 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
*
7247 TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
7312 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * * *
7331 TATGGGCTTTGATAA-GATGCCACTAACTTGTGGGTTTTGAAAGGATACCACTGACTTATGGTCT
1 TGTGGGCTTTGA-AAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-
*
7395 TTTG-AAGAGATGCCACTAACT
64 TTTGAAAG-GATGCCACTGACT
** * * * *
7416 TGTGTTCTTTTG-AAGAGATGCCACTAACCTGTGGGTTTTCAAAGGATGCCACTAACGTGTGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * *
7480 TTTAAAAGGGTGCCACTGACC
64 TTTGAAAGGATGCCACTGACT
* * * * * *
7501 TGTGGGCTTT-AATAGGGTGCCACTGACTTGTGGGTTTTGAAAAGATGCCACTAACTTATGTGCT
1 TGTGGGCTTTGAA-AGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-
7565 TTTG-AAGAGATGCCACTGACT
64 TTTGAAAG-GATGCCACTGACT
* * * *
7586 TGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTTGAAAGGGTGCCACTAACTTGT-GGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
7650 TCGAAAAGATGTCATTGACT
66 T-GAAAGGATGCCACTGACT
* * ** * *
7670 TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGTCTTCAAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
7735 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * * * *
7754 TGTGGGCTTTCATA-GAGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGTT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
*
7818 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * *
7838 TGTGGGCTTTAAAAGGATGCCACTTACTTGTGGGCTTTCAAAGGGTGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * * *
7903 TGAAAAGAAGCCATTAACT
66 TGAAAGGATGCCACTGACT
* * * *
7922 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGATTTAAAAGGGTACCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
7987 TGGAAA-AATGCCACTAACT
66 T-GAAAGGATGCCACTGACT
* * * * * *
8006 TGTGAGCTTTTG-AAGAGATGCAACTGACTTGTAGGCTTTGAAAGGATGCTACTAACTTGTAGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * *
8070 TTTGAAAATG-TGTCACTGACC
64 TTTG-AAAGGATGCCACTGACT
* *
8091 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTTGAATA-GATGCCACTGACTTGTGAGC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAA-AGGATGCCACTAACTTGTGGGC
8155 TTTGAAAGGATGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* ** * *
8176 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTAAAAAGG-TACCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTAACTTGTGGGCT
8240 TTGAAAGGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * *** *
8260 TGTGGGCTTTAAAAGGATACCACTAACTTGTAGGCTTTGAAAGGGTATTACTAACTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
8325 TAAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * * *
8344 TGTGGGCTTTGAAAGGATGCCACTGACTTATGGGTTTTGAAAAGTTGCCA-TTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
8408 TTAAAGAGATGCCACTAACT
66 TGAAAG-GATGCCACTGACT
* * *
8428 TGTGGTCTTTTGAACA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGC
1 TGTGGGC-TTTGAA-AGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
8492 TTT-AAAGGGTGTCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * * * *
8512 TGTGGGCTTTAAAAAGG-TGCCATTGACTTGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGC
1 TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGGC
* *** *
8576 TTTGAAAGGGTATTACTAACT
64 TTTGAAAGGATGCCACTGACT
* * *
8597 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
8662 TGAAAAGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * *
8681 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAAATGCCACTGACTTGTGGTC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC
* *
8745 TTTTGAAAAGATGCCACTAACT
64 -TTTGAAAGGATGCCACTGACT
* * * * * *
8767 TGTAGTCTTTTG-AAGAGATGCCACTAACTTGTGGGTTTTGAAAAGATGTCACTAACTTGTGGGT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * *
8831 TTTGAAAGGGTGCCACTCATT
64 TTTGAAAGGATGCCACTGACT
* * * * * * * * ** *
8852 TATGGGCTTTGAAAAGATACGACTGACTTGTGGGCTTTTGAAAAGATGCTACTGACTTGTTTGTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTAACTTGTGGGCT
* * *
8917 TTGAAAAGATGCCACTAACC
65 TTGAAAGGATGCCACTGACT
* * * *
8937 TGTGGGCTTTGAAAGGATACCACTCACTTGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
9002 TAAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* *
9021 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
9086 TGATAA-GATGCCACTAACT
66 TGA-AAGGATGCCACTGACT
* * * * **
9105 TGTGGGCTTTGAAAGGATGCCACTGACTCAG-GGTCTTTTG-AAGAGATGCCACTGACTTGTGTT
1 TGTGGGCTTTGAAAGGATGCCACTAACT-TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
*
9168 CTTTTGAATA-GATGCCACTAACT
63 C-TTTGAA-AGGATGCCACTGACT
* * * * * * * * *
9191 TGTGTGATTTGAAAAGATGCCACTAACTTGTGCGCCTTAAAAGGGTGCCGCTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
9256 TGAAATGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * *
9275 TGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCACTTACTTGTGG
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGG
*
9338 GCTTTGAAAGGATGCCCCTGACT
62 GCTTTGAAAGGATGCCACTGACT
* * * ** * *
9361 TGTAGGCTTTGAAAGGGTGCCACTTACTTGTGGTATTCGAAAAGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
9426 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * *
9445 TGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
*
9509 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * *
9529 TATGGGCTTTGAAAGGATGCCACTTACTTGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * * * *
9594 GGAAAAGAAGCCATTAACT
66 TGAAAGGATGCCACTGACT
* * * * *
9613 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCATTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
9678 TGGAAA-AATGCCACTAACT
66 T-GAAAGGATGCCACTGACT
* * * *
9697 TGTGAGCTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
*
9761 TTTGAAAGGGTGCTACTGACATGCCACTAACT
64 TTTGAAA----G-----G--ATGCCACTGACT
* * * *
9793 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* *
9857 TTGAAAGGATGCCTCTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * * * *
9877 TGTAGGCTTT-AAAGGGTGCCACTGACTTGTAGGCTTTGAAAAGATGCCATTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGG-CT
*
9941 TTG-AAGAGATGCCATTGACT
65 TTGAAAG-GATGCCACTGACT
* * *
9961 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
10026 TAAAAAGG-TAG-CACTGACT
66 T-GAAAGGAT-GCCACTGACT
* * *
10045 TGTGGGCTTTGAAAGGATGCCACTGAA-TTGTGGGCTTTAAAAGGATACCACTAACTTGTAGGCT
1 TGTGGGCTTTGAAAGGATGCCACT-AACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* *** *
10109 TTGAAAGGGTATTACTAACT
65 TTGAAAGGATGCCACTGACT
* * *
10129 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
10194 TGAAAAGTTGCCA-TTACT
66 TGAAAGGATGCCACTGACT
* * *
10212 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTTGAACA-GATGCCACTGACTTGTGGG
1 TGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGGC-TTTGAA-AGGATGCCACTAACTTGTGGG
*
10276 CTTTGAAAGGATGCCACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * * * * *
10298 TGTAGGCTTTG-AAGGGTGTCACTGACTTGTGGGCTTTAAAAAGG-TGCCATTAACTTGTGGGTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGCT
* *
10361 TTTAAAGAGATGCCATTGACT
65 TTGAAAG-GATGCCACTGACT
* *** * *
10382 TGTGGGCTTTGAAAGGGTATTACTAACTTATGGGTTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
10447 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * *
10466 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-T
* *
10531 TTG-AAGAAATGCCACTAACT
65 TTGAAAG-GATGCCACTGACT
* * * * *
10551 TATGGTCTTTTGAAAAGATGCCACTAACTTGTGGTCTTTTG-AAGAGATGCCACTAACTTGTAGG
1 TGTGGGC-TTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
* * * *
10615 TTTTGAAAAGATGTCACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * * * * * *
10637 TGTGGGTTTTGAAAGGGTGCCACT--TTTATGGGCTTTGAAAAGATACGACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-T
10700 TTG-AAGAGATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
** * * * * * * *
10720 TGTTTGTTTTGAAAAGATGCCACTAACCTGTGGGCTTTGAAAGGATACCACTCACTTGTGAGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
10785 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
*
10804 TGTGGGCTTT-AAATGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTGAAA-GGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
*
10868 TTGAAAGGGTGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
10888 TGTGGGCTTTGATAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTAG-GGTC
1 TGTGGGCTTTGA-AAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTT-GTGGGC
10951 TTTTG-AAGAGATGCCACTGACT
64 -TTTGAAAG-GATGCCACTGACT
** * * * *
10973 TGTGTTCTTTTGAATA-GATGCCACTAACTTGTGTGATTTGAAAAGATGCCACTAACTTGTGCGC
1 TGTGGGC-TTTGAA-AGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * * *
11037 CTTAAAAGGGTGCCGCTGACT
64 TTTGAAAGGATGCCACTGACT
* * * *
11058 TGTGGGCTTTGAAATGATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC
*
11122 TTTTG-AAGAGATGCCACTTACT
64 -TTTGAAAG-GATGCCACTGACT
* * * * **
11144 TGTGGGCTTTGAAAGGATGCCCCTGACTTGTAGGCTTTGAAAGGGTGCCACTAACTTGTGGTATT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
11209 CGAAAAGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* *
11228 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCT
*
11292 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
11312 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAAGATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
11377 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
11396 TTTGGGCTTGGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * * *
11461 TAAAAGGGTACCATTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
11480 TGTGGGCTTTGGAAA-AATGCCACTAACTTTTGAGCTTTTG-AAGAGATGCCATTGACTTGTGGG
1 TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
11543 CTTTGAAAGGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
*
11565 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTA
* *
11629 ACTTGTGGGCTTTGAAAAGATGTCACTGACT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
11660 TGTGGGCTTTGAAAGGATGCCTCTAACTTGTAGGCTTT-AAAGGGTGCCACTAACTTGTAGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
11724 TGAAAAGATGCCATTGACT
66 TGAAAGGATGCCACTGACT
* * *
11743 TGTGGGTTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
1 TGTGGG-CTTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
*
11807 TTTGAAAGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * *
11828 TGTGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
11893 TAAAAGTG-TACCATTGACT
66 TGAAAG-GATGCCACTGACT
* * * * *
11912 TGTGGGCTTTGGAAA-AATGCTACTAACTTGTGAGCTTTTG-AAGATATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
11975 CTTTGAAAGGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
* ** *
11997 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTGACTTCCGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTA
* *
12061 ACTTGTGGGCTTTGAAAAGATGTCACTGACT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
12092 TGTGGGCTTTGAAAGGATGCCTCTAACTTGTAGGCTTT-AAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
12156 TGAAAAGATGCCATTGACT
66 TGAAAGGATGCCACTGACT
* * *
12175 TGTGGGTTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
1 TGTGGG-CTTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
12239 TTTGAAA-GAGTGCCACTGACT
64 TTTGAAAGGA-TGCCACTGACT
*
12260 TGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCATTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* * *
12324 TAAAAAGG-TACCAGTGACT
66 T-GAAAGGATGCCACTGACT
* * *
12343 TGTGGGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
12406 CTTTGAAAGGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
*
12428 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTA
* *
12492 ACTTGTGGGCTTTGAAAAGATGTCACTGACT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
** * * * * *
12523 TGTGGGCTTTGAAAGGACACCACTGATTTGTGGCCTTTAAAAGGGTGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
12588 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
12607 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTTTCAAAGGGTGCGACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
12672 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* *
12691 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
12756 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * *
12775 TGTGGGTTTTGAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGATGCCACCAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
12840 TGAAAGGGTGCCACT-ACT
66 TGAAAGGATGCCACTGACT
* * * *
12858 TTTGGTCTTTGAAAAGG-TGTCC-CTGACTTGTGGGCTTTCAAAGGATGCC
1 TGTGGGCTTTG-AAAGGATG-CCACTAACTTGTGGGCTTTGAAAGGATGCC
12907 TTTGACTTGT
Statistics
Matches: 5777, Mismatches: 829, Indels: 483
0.81 0.12 0.07
Matches are distributed among these distances:
82 25 0.00
83 449 0.08
84 2951 0.51
85 1469 0.25
86 470 0.08
87 49 0.01
88 59 0.01
89 1 0.00
91 4 0.00
94 7 0.00
95 218 0.04
96 75 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (84 bp):
TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
TGAAAGGATGCCACTGACT
Found at i:9780 original size:28 final size:28
Alignment explanation
Indices: 5975--9769 Score: 3878
Period size: 28 Copynumber: 134.6 Consensus size: 28
5965 CATCGACTTG
*
5975 TGTGGGCTTTGAAAGGGGATGCCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTAACT
* * * *
6005 TGTGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
6033 TGTAGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
6061 TATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
6089 TGTGTAAGCTTTGAAATGGTATGCCATTAACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTAACT
*
6121 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
6149 TGTGGGCTTTGAAAGGATGCCGA-TGACT
1 TGTGGGCTTTGAAAGGATGCC-ACTAACT
* *
6177 TGTGGGCTTTAAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
6205 TATGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
**
6233 TGTGGGCTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
6261 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
6289 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
6318 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
** * *
6346 TGTAAGCTTTGAAAATG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTAACT
* ** *
6374 TATGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
6402 TCTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
*
6431 TGTGAGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
6459 TATGGGCTTTCAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
6487 TATGGGCATTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTAACT
* * *
6515 TGTGGCCTTTTAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
6543 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* **
6571 TGTGGGCTTTGAAAGGGTGTTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
6599 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
6627 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
6655 TGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
6682 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTAACT
* * *
6711 TGTGGTCTTTCG-AAGAGATGTCACTGACT
1 TGTGGGCTTT-GAAAG-GATGCCACTAACT
6740 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
6768 TGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
6795 TGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
6823 T-TTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGC--TTTGAAAG-GATGCCACTA-ACT
* *
6852 TATGGGCTTTGAAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
6880 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
6908 TGTGGGCTTTGAAAGCG-TGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTAACT
*
6936 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
6964 TGTGAGCTTTAAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
6992 TGTGGTCTTTTG-AAGCGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
*
7021 TGTGGTCTTTTG-AAGAGATGCCACTGAA-T
1 TGTGGGC-TTTGAAAG-GATGCCACT-AACT
* * *
7050 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
7078 TGTGGGCTTTGAAAGGGTGCCATTCATT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
7106 TATGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
7134 TATGGGTTTTTG-AAGAAATGCCACTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTAACT
*
7163 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
7191 TGTGCGCTTTGTAATGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
7219 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
7247 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
7275 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
7303 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
7331 TATGGGCTTTGATAA-GATGCCACTAACT
1 TGTGGGCTTTGA-AAGGATGCCACTAACT
* * *
7359 TGTGGGTTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
7387 TATGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
** *
7416 TGTGTTCTTTTG-AAGAGATGCCACTAACC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
* * *
7445 TGTGGGTTTTCAAAGGATGCCACTAACG
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
7473 TGTGGGCTTTAAAAGGGTGCCACTGACC
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
7501 TGTGGGCTTT-AATAGGGTGCCACTGACT
1 TGTGGGCTTTGAA-AGGATGCCACTAACT
* *
7529 TGTGGGTTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
7557 TATGTGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
*
7586 TGTAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
7614 TGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
7642 TGT-GGTTTTCGAAAAGATGTCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTAACT
*
7670 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* ** * *
7698 TGTGGTCTTCAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
7726 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
7754 TGTGGGCTTTCATA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACT
* *
7782 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
7810 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
7838 TGTGGGCTTTAAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
7866 TGTGGGCTTTCAAAGGGTGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
7894 TGTGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
7922 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
7950 TGTGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
7978 TGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTAACT
* * *
8006 TGTGAGCTTTTG-AAGAGATGCAACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
* *
8035 TGTAGGCTTTGAAAGGATGCTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
8063 TGTAGGCTTTGAAAATG-TGTCACTGACC
1 TGTGGGCTTTG-AAAGGATGCCACTAACT
8091 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
8119 TGTGGGCTTTTGAATA-GATGCCACTGACT
1 TGTGGGC-TTTGAA-AGGATGCCACTAACT
* *
8148 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
8176 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* ** * *
8204 TATGGGCATTAAAAAGG-TACCACTGACT
1 TGTGGGC-TTTGAAAGGATGCCACTAACT
*
8232 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
8260 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * ***
8288 TGTAGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
8316 TATGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
8344 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
8372 TATGGGTTTTGAAAAGTTGCCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
8399 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTAACT
* *
8428 TGTGGTCTTTTGAACA-GATGCCACTGACT
1 TGTGGGC-TTTGAA-AGGATGCCACTAACT
8457 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
8485 TGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
8512 TGTGGGCTTTAAAAAGG-TGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTAACT
* * * *
8540 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTAACT
* ***
8569 TGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
8597 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
8625 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
8653 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
8681 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
8709 TGTGGTCTTTTG-AAGAAATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
* *
8738 TGTGGTCTTTTGAAAAGATGCCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTAACT
* *
8767 TGTAGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
* * *
8796 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
8824 TGTGGGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
8852 TATGGGCTTTGAAAAGATACGACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
8880 TGTGGGCTTTTGAAAAGATGCTACTGACT
1 TGTGGGC-TTTGAAAGGATGCCACTAACT
** * * *
8909 TGTTTGTTTTGAAAAGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
8937 TGTGGGCTTTGAAAGGATACCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
8965 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
8993 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
9021 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
9049 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
9077 TGTGGGCTTTGATAA-GATGCCACTAACT
1 TGTGGGCTTTGA-AAGGATGCCACTAACT
*
9105 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
9133 CAG-GGTCTTTTG-AAGAGATGCCACTGACT
1 -TGTGGGC-TTTGAAAG-GATGCCACTAACT
**
9162 TGTGTTCTTTTGAATA-GATGCCACTAACT
1 TGTGGGC-TTTGAA-AGGATGCCACTAACT
* * *
9191 TGTGTGATTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
9219 TGTGCGCCTTAAAAGGGTGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
9247 TGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
9275 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
*
9304 TGTGGGCTTTTG-AAGAGATGCCACTTACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
* *
9333 TGTGGGCTTTGAAAGGATGCCCCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
9361 TGTAGGCTTTGAAAGGGTGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
** * *
9389 TGTGGTATTCGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
9417 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
9445 TGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACT
* *
9473 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
9501 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
9529 TATGGGCTTTGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
9557 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
9585 TTTGGGCTTGGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
9613 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
9641 TGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
9669 TGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTAACT
* * *
9697 TGTGAGCTTTTG-AAGAGATGCCATTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTAACT
*
9726 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
9754 TGTGGGCTTTGAAAGG
1 TGTGGGCTTTGAAAGG
9770 GTGCTACTGA
Statistics
Matches: 3158, Mismatches: 509, Indels: 198
0.82 0.13 0.05
Matches are distributed among these distances:
27 129 0.04
28 2367 0.75
29 601 0.19
30 44 0.01
31 4 0.00
32 13 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTAACT
Found at i:9796 original size:39 final size:39
Alignment explanation
Indices: 9742--9819 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
9732 CTTTGAAAGG
* * *
9742 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
9781 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
9820 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:9822 original size:28 final size:29
Alignment explanation
Indices: 9781--12923 Score: 2584
Period size: 28 Copynumber: 110.8 Consensus size: 29
9771 TGCTACTGAC
*
9781 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
9810 -TGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
9837 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
9865 ATGCCTCTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
9892 GTGCCACTGACTTGTAGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
9920 ATGCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
* *
9949 ATGCCATTGACTTGTGAGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
9977 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10005 ATGCCACTAACTTATGGGCTTT-AAAAAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10033 GTAG-CACTGACTTGTGGGCTTTGAAAG-G
1 AT-GCCACTGACTTGTGGGCTTTGAAAGAG
* *
10061 ATGCCACTGAATTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
10089 ATACCACTAACTTGTAGGCTTTGAAAGGG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10118 TAT--TACTAACTTGTGGGCTTTAAAAG-G
1 -ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10145 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10173 ATGCCACTGACTTGTGGGTTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10201 TTGCCA-TTACTTGTGGGCTTTTAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10229 ATGCCACTAACTTGTGGTCTTTTG-AACAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
10258 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10286 ATGCCACTAACTTGTAGGCTTTG-AAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10313 GTGTCACTGACTTGTGGGCTTT-AAAAAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * * *
10341 GTGCCATTAACTTGTGGGTTTTTAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10370 ATGCCATTGACTTGTGGGCTTTGAAAGGG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
10399 TAT--TACTAACTTATGGGTTTTGAAAG-G
1 -ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10426 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10454 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10482 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
10510 ATGCCACTAACCTGTGGTCTTTTG-AAGAA
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
* * *
10539 ATGCCACTAACTTATGGTCTTTTGAAA-AG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
* *
10568 ATGCCACTAACTTGTGGTCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
* * *
10597 ATGCCACTAACTTGTAGGTTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10625 ATGTCACTAACTTGTGGGTTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10653 GTGCCACT--TTTATGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10679 ATACGACTGACTTGTGGGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
** *
10708 ATGCCACTGACTTGTTTGTTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10736 ATGCCACTAACCTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
10764 ATACCACTCACTTGTGAGTTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10792 ATGCCACTAACTTGTGGGCTTT-AAATG-G
1 ATGCCACTGACTTGTGGGCTTTGAAA-GAG
10820 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10848 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10876 GTGCCACTGACTTGTGGGCTTTGATA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
10904 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10932 ATGCCACTGACTTAG-GGTCTTTTG-AAGAG
1 ATGCCACTGACTT-GTGGGC-TTTGAAAGAG
** *
10961 ATGCCACTGACTTGTGTTCTTTTG-AATAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
* * *
10990 ATGCCACTAACTTGTGTGATTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
11018 ATGCCACTAACTTGTGCGCCTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11046 GTGCCGCTGACTTGTGGGCTTTGAAA-TG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11074 ATGCCACTGACTTGTAGGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
11103 ATGCCACTGACTTGTGGGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
*
11132 ATGCCACTTACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
11160 ATGCCCCTGACTTGTAGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * ** *
11188 GTGCCACTAACTTGTGGTATTCGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11216 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11244 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11273 -TGCTACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
11300 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
11328 ATGCCACTAACTTATGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11356 ATGCCACTTACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11384 GTGCCACTGACTTTTGGGCTTGGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11412 AAGCCATTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
11440 ATGCCACTAACTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11468 GTACCATTGACTTGTGGGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* * *
11496 ATGCCACTAACTTTTGAGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
*
11525 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
11553 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *** *** **
11581 GTGCTACTGACATG-CCACTAACTTGTGGGCT
1 ATGCCACTGACTTGTGGGCT---TTGAAAGAG
* ** * ** ** *
11612 TTGAAAGAGTGCCAC-TGACTTGTGGGCTTTGAAAAG
1 ATG--CCACTG--ACTTG---TG-GGCTTTGAAAGAG
*
11648 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11676 ATGCCTCTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11703 GTGCCACTAACTTGTAGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
11731 ATGCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
*
11760 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11788 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11816 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11844 AAGCCATTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11872 ATGCCACTAACTTGTGGGCTTTAAAAGTG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
11901 -TACCATTGACTTGTGGGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* * * *
11928 ATGCTACTAACTTGTGAGCTTTTG-AAGAT
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
11957 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
11985 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * * * ***
12013 GTGCTACTGACATGCCACT-GACTTCCGGGCTTTGA-
1 ATGCCACTGACTTG----TGGGCTT---TG-AAAGAG
* * ** ** *
12048 AAG--AGTGCCAC-TGACTTGTGGGCTTTGAAAAG
1 ATGCCACTG--ACTTG---TG-GGCTTTGAAAGAG
*
12080 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12108 ATGCCTCTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12135 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12163 ATGCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
*
12192 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12220 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12249 -TGCCACTGACTTGTGGGCTTTG-AA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12275 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12303 ATGCCATTAACTTGTGGGCTTT-AAAAAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12331 GTACCAGTGACTTGTGGGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* *
12359 ATGCCACTAACTTGTGAGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
12388 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12416 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *** *** **
12444 GTGCTACTGACATG-CCACTAACTTGTGGGCT
1 ATGCCACTGACTTGTGGGCT---TTGAAAGAG
* ** * ** ** *
12475 TTGAAAGAGTGCCAC-TGACTTGTGGGCTTTGAAAAG
1 ATG--CCACTG--ACTTG---TG-GGCTTTGAAAGAG
*
12511 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
** * * *
12539 ACACCACTGATTTGTGGCCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12567 GTGCCACTAACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12595 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12623 ATGCCACTAACTTGTGAGCTTTCAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12651 GTGCGACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12679 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12707 ATGCCACTAACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
12735 ATGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12763 ATGCCACTGACTTGTGGGTTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
12791 ATGCCACTGATTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
**
12819 ATGCCACCAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
12847 GTGCCACT-ACTTTTGGTCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
12874 GTGTCC-CTGACTTGTGGGCTTTCAAAG-G
1 ATG-CCACTGACTTGTGGGCTTTGAAAGAG
** *
12902 ATGCCTTTGACTTGTGGTCTTT
1 ATGCCACTGACTTGTGGGCTTT
12924 AAAAAGGGCT
Statistics
Matches: 2549, Mismatches: 409, Indels: 313
0.78 0.13 0.10
Matches are distributed among these distances:
26 25 0.01
27 184 0.07
28 1807 0.71
29 439 0.17
30 26 0.01
31 9 0.00
32 9 0.00
33 16 0.01
34 16 0.01
35 10 0.00
36 8 0.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (29 bp):
ATGCCACTGACTTGTGGGCTTTGAAAGAG
Found at i:9846 original size:67 final size:67
Alignment explanation
Indices: 9714--9847 Score: 200
Period size: 67 Copynumber: 2.0 Consensus size: 67
9704 TTTTGAAGAG
* * * *
9714 ATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTG
1 ATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTG
9779 AC
66 AC
9781 ATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATG-TCAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGATGCT-AC
9844 TGAC
64 TGAC
9848 TTGTGGGCTT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
66 3 0.05
67 58 0.95
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (67 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTG
AC
Found at i:11607 original size:39 final size:39
Alignment explanation
Indices: 11553--11630 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
11543 CTTTGAAAGG
* * *
11553 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
11592 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
11631 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:12043 original size:39 final size:39
Alignment explanation
Indices: 11985--12062 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
11975 CTTTGAAAGG
** * *
11985 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTGACTTCCGGGCTTTGAAAGAGTGCCACTGAC
12024 ATGCCACTGACTTCCGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTGACTTCCGGGCTTTGAAAGAGTGCCACTGAC
12063 TTGTGGGCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
ATGCCACTGACTTCCGGGCTTTGAAAGAGTGCCACTGAC
Found at i:12470 original size:39 final size:39
Alignment explanation
Indices: 12416--12493 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
12406 CTTTGAAAGG
* * *
12416 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
12455 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
12494 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:12972 original size:28 final size:28
Alignment explanation
Indices: 12550--13014 Score: 140
Period size: 28 Copynumber: 16.6 Consensus size: 28
12540 CACCACTGAT
* * ** *
12550 TTGTGGCCTTTAAAAGGGTGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
12578 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * ** *
12606 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
12634 TTGTGAG-CTTTCAAAGGGTGCGACTGAC
1 TTGTG-GTCTTTAAAAGGTTGCCACGGAG
* * * *
12662 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * ** *
12690 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
12718 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
12746 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
12774 TTGTGGGT-TTTGAAAGGATGCCACTGAT
1 TTGT-GGTCTTTAAAAGGTTGCCACGGAG
* * * ** *
12802 TTGTGGGCTTTGAAAGGATGCCACCAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
12830 TTGTGGGCTTTGAAAGGGTGCCAC-TAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
12857 TTTTGGTCTTTGAAAAGG-TGTCC-CTGAC
1 TTGTGGTCTTT-AAAAGGTTG-CCACGGAG
* * * *** *
12885 TTGTGGGCTTTCAAAGGATGCCTTTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
*
12913 TTGTGGTCTTTAAAAAGGGCTGCCACGGAG
1 TTGTGGTCTTT-AAAA-GGTTGCCACGGAG
*
12943 TTGTGGTCTTTATAAGGTTGCCACGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* *
12971 TTGTGGAC-TTAAAAGGTTGCCATGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
12998 TTATGGACTTAAAAAGG
1 TTGTGGTCTTTAAAAGG
13015 AATGCCACTA
Statistics
Matches: 372, Mismatches: 47, Indels: 36
0.82 0.10 0.08
Matches are distributed among these distances:
27 57 0.15
28 277 0.74
29 19 0.05
30 19 0.05
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
TTGTGGTCTTTAAAAGGTTGCCACGGAG
Found at i:12997 original size:27 final size:27
Alignment explanation
Indices: 12933--13011 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
12923 TAAAAAGGGC
* *
12933 TGCCACGGAGTTGTGGTCTTTATAAGGT
1 TGCCACGGAGTTGTGGAC-TTAAAAGGT
12961 TGCCACGGAGTTGTGGACTTAAAAGGT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
* *
12988 TGCCATGGAGTTATGGACTTAAAA
1 TGCCACGGAGTTGTGGACTTAAAA
13012 AGGAATGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 30 0.64
28 17 0.36
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.30
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGT
Found at i:25457 original size:21 final size:22
Alignment explanation
Indices: 25401--25459 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
25391 TAACCTTTTG
* *
25401 ATAAAAAT-AATAATGTTATCA
1 ATAAATATCAATAATTTTATCA
* *
25422 ATTAATTATCTATAATTTTATCA
1 A-TAAATATCAATAATTTTATCA
25445 A-AAATATCAATAATT
1 ATAAATATCAATAATT
25460 CGTACAACAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 13 0.43
22 5 0.17
23 12 0.40
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.41
Consensus pattern (22 bp):
ATAAATATCAATAATTTTATCA
Done.