genome.fa.s998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold998
Parameters: 2 7 7 80 10 50 1000
Length:  30126

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9203--9238	2	18.0	2	100	0	72	50	0	0	50	1.00
13338--13377	19	2.1	19	100	0	80	27	25	5	42	1.75
17240--17279	2	20.0	2	89	0	62	45	0	5	50	1.23
21185--21220	16	2.1	18	90	10	58	30	5	0	63	1.17
21162--21208	24	1.9	23	83	12	58	27	0	2	70	0.99
21561--21612	18	2.8	19	83	11	56	55	5	0	38	1.24
24935--25063	52	2.5	52	94	0	222	30	15	17	36	1.91
24935--25081	52	2.8	51	89	4	206	31	14	18	35	1.91
25072--25096	13	1.9	13	100	0	50	36	8	16	40	1.77
25140--25201	18	3.7	18	77	22	80	35	16	12	35	1.87
25158--25214	13	3.9	13	76	24	60	33	15	14	36	1.88
25138--25245	32	3.4	31	89	5	153	36	13	14	35	1.86
25052--25367	151	2.1	152	98	0	607	34	12	15	37	1.84
25223--25247	13	1.9	13	100	0	50	36	8	16	40	1.77
25310--25399	13	5.9	13	71	28	63	33	16	13	36	1.88
25289--25419	32	4.0	33	95	1	221	35	16	11	35	1.85
25355--25420	20	3.7	20	71	26	74	36	18	10	34	1.85
25289--25419	65	2.0	65	92	2	219	35	16	11	35	1.85
26261--26411	52	2.9	55	86	8	215	33	18	25	21	1.96
26365--27230	43	19.0	44	70	17	406	31	17	25	25	1.97
26253--26743	49	10.2	49	78	10	498	31	17	25	24	1.97
26319--26688	92	4.0	91	85	4	463	30	17	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26813--27231	92	4.5	92	91	2	651	30	18	25	25	1.98
27237--27390	32	4.8	32	87	4	222	20	18	31	29	1.96
27397--27626	33	6.9	34	76	15	214	33	11	33	21	1.89
27464--27557	28	3.1	28	73	16	98	32	12	32	21	1.91
27492--27626	34	3.9	35	81	6	152	36	10	31	21	1.87
27402--27592	97	2.0	95	86	4	267	32	12	34	21	1.90
27492--27628	67	2.0	68	88	4	206	37	10	31	21	1.87
27397--27653	132	2.0	130	82	7	315	33	11	32	21	1.90

Tables:   1

The End!