genome.fa.s999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold999
Parameters: 2 7 7 80 10 50 1000
Length:  51679

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15170--15194	13	1.9	13	100	0	50	32	16	16	36	1.90
15182--15231	20	2.4	21	86	3	66	38	14	18	30	1.89
15268--15319	20	2.7	20	93	3	88	40	19	11	28	1.86
21245--21270	8	3.2	8	100	0	52	15	0	23	61	1.33
21475--21536	13	4.8	13	93	0	106	32	16	17	33	1.92
21475--21536	26	2.4	26	100	0	124	32	16	17	33	1.92
23991--24015	13	1.9	13	100	0	50	32	16	16	36	1.90
24003--24055	20	2.6	21	82	8	65	37	15	16	30	1.90
24089--24140	20	2.7	20	93	3	88	40	19	11	28	1.86
35899--35932	14	2.4	14	95	0	59	23	0	2	73	0.97
37005--37051	21	2.2	21	84	3	58	74	4	0	21	0.99
37301--37367	29	2.2	32	84	7	86	47	0	1	50	1.10
38712--38758	15	3.1	15	82	14	60	57	0	0	42	0.98
38712--38752	16	2.6	16	82	17	59	53	0	0	46	1.00
44230--44321	17	5.4	18	73	19	81	56	0	0	43	0.99
44226--44321	33	2.9	33	80	14	108	55	0	0	44	0.99
44215--44341	59	2.2	58	83	13	156	56	0	0	43	0.99
44277--44354	25	2.8	25	81	13	75	57	0	0	42	0.98
44423--44460	15	2.7	14	88	8	51	52	0	2	44	1.14
47802--48287	152	3.2	151	86	4	665	35	22	18	22	1.95
50943--50978	18	1.9	19	88	5	56	52	2	5	38	1.39
50943--50979	19	1.9	19	88	0	56	54	2	5	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50813--51179	166	2.2	166	80	5	431	55	6	8	29	1.55
51059--51090	16	1.9	17	93	6	57	71	6	3	18	1.20

Tables:   1

The End!